BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1415
(622 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 117/325 (36%), Positives = 173/325 (53%), Gaps = 58/325 (17%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQK-VKTRVLR 357
KLG++ + + Y + N L+V +I+ +L D G+SDPYVKV LLPDK+K +T+V R
Sbjct: 4 KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDM-GGTSDPYVKVFLLPDKKKKFETKVHR 62
Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDI 417
KT NP++NE+ FT P+
Sbjct: 63 KTLNPVFNEQ--FTFKVPYS---------------------------------------- 80
Query: 418 VGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPR 477
E G TL V+ FDR+S+ DI+GE + + + +GH RD+Q
Sbjct: 81 -----------ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD-FGHVTEEWRDLQSA 128
Query: 478 NLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVA 537
+ + + G+I SL + P A + T+V+L+A+NL KMDV GL+DPYVK++L+ G+R+
Sbjct: 129 E-KEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLK 187
Query: 538 KKKTHVKKRTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSS 597
KKKT +KK TLNP YNESF FEVP ++ KN+ IG++ +G + S+
Sbjct: 188 KKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN-ST 246
Query: 598 GTALTHWTDVCNSPRRQIAEWLTYR 622
G L HW+D+ +PRR IA+W T +
Sbjct: 247 GAELRHWSDMLANPRRPIAQWHTLQ 271
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 542
S+ G++ SL + N+ + +++A LP +D+ G +DPYVKV+LL ++ K +T
Sbjct: 2 SEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETK 59
Query: 543 VKKRTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSS-GTAL 601
V ++TLNPV+NE F F+VP R +K+++IG + + G
Sbjct: 60 VHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVT 119
Query: 602 THWTDVCNSPRRQ 614
W D+ ++ + +
Sbjct: 120 EEWRDLQSAEKEE 132
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 91/133 (68%), Gaps = 1/133 (0%)
Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
RGE+L+SLC+Q N T+VVLKAR+LPK DV+GL+DPYVKV L + +R++KKKTHVKK
Sbjct: 16 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKK 75
Query: 546 RTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHWT 605
T N V+NE FVF++P R ++NEVIGRL LG + G+ HW
Sbjct: 76 CTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGA-TAEGSGGGHWK 134
Query: 606 DVCNSPRRQIAEW 618
++C+ PRRQIA+W
Sbjct: 135 EICDFPRRQIAKW 147
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 5/101 (4%)
Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV---KTRVLR 357
G++ + YQ N L V V+K R L D SG SDPYVKV+L K+++ KT V +
Sbjct: 17 GELLVSLCYQSTTNTLTVVVLKARHLPKSDV-SGLSDPYVKVNLYHAKKRISKKKTHVKK 75
Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDI 398
T N ++NE F F I L+ ++ F+V +R SR+++
Sbjct: 76 CTPNAVFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEV 115
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 107/335 (31%), Positives = 156/335 (46%), Gaps = 74/335 (22%)
Query: 294 GNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD-KQKVK 352
G A G+I F ++Y + LVV +++ DL KD+ +G SDPYVK++LLPD K+K +
Sbjct: 1 GEAGAPCGRISFALRYLYGSDQLVVRILQALDLPAKDS-NGFSDPYVKIYLLPDRKKKFQ 59
Query: 353 TRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRY 412
T+V RKT NPI+NE F F+ + +L LHF V+ F DR+
Sbjct: 60 TKVHRKTLNPIFNETFQFS-VPLAELAQRKLHFSVYDF-------------------DRF 99
Query: 413 SRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDI---------VGEVFYSLQSFET 463
SR D++G+V + L DR DI +GE+ +SL T
Sbjct: 100 SRHDLIGQVVLD--------NLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLPT 151
Query: 464 YGHSLSFCRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADP 523
G LL++ A+N LKA MD+TG +DP
Sbjct: 152 AG------------------------LLTVTIIKASN------LKA-----MDLTGFSDP 176
Query: 524 YVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKN 583
YVK L+ +G+R+ K+KT +KK TLNP YNE+ VF+V + N
Sbjct: 177 YVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHN 236
Query: 584 EVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEW 618
EVIG +G + + HW ++ +PR+ + W
Sbjct: 237 EVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHW 271
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 154/328 (46%), Gaps = 74/328 (22%)
Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD-KQKVKTRVLRKT 359
G+I F ++Y + LVV +++ DL KD+ +G SDPYVK++LLPD K+K +T+V RKT
Sbjct: 7 GRISFALRYLYGSDQLVVRILQALDLPAKDS-NGFSDPYVKIYLLPDRKKKFQTKVHRKT 65
Query: 360 RNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVG 419
NPI+NE F F+ + +L LHF V+ F DR+SR D++G
Sbjct: 66 LNPIFNETFQFS-VPLAELAQRKLHFSVYDF-------------------DRFSRHDLIG 105
Query: 420 EVFYSLQSFETYGSTLHFVVFSFDRYSRDDI---------VGEVFYSLQSFETYGHSLSF 470
+V + L DR DI +GE+ +SL T G
Sbjct: 106 QVVLD--------NLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLPTAG----- 152
Query: 471 CRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLL 530
LL++ A+N LKA MD+TG +DPYVK L+
Sbjct: 153 -------------------LLTVTIIKASN------LKA-----MDLTGFSDPYVKASLI 182
Query: 531 YKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLD 590
+G+R+ K+KT +KK TLNP YNE+ VF+V + NEVIG
Sbjct: 183 SEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCR 242
Query: 591 LGGDKSSGTALTHWTDVCNSPRRQIAEW 618
+G + + HW ++ +PR+ + W
Sbjct: 243 VGPEAADPHGREHWAEMLANPRKPVEHW 270
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 294 GNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKT 353
G+ + LG++ F + Y +L VT+IK +L D +G SDPYVK L+ + +++K
Sbjct: 132 GSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDL-TGFSDPYVKASLISEGRRLKK 190
Query: 354 R---VLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDI 398
R + + T NP YNE F + P ++ L V +D +++
Sbjct: 191 RKTSIKKNTLNPTYNEALVFD-VAPESVENVGLSIAVVDYDCIGHNEV 237
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 118 bits (296), Expect = 8e-27, Method: Composition-based stats.
Identities = 60/133 (45%), Positives = 87/133 (65%), Gaps = 1/133 (0%)
Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
RGE+LLSLC+ P+AN + ++KARNL MD+ G +DPYVKV+L+YK +RV KKKT KK
Sbjct: 2 RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKK 61
Query: 546 RTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHWT 605
R LNP++NESF F++P ++++N+VIG++ L KS + HW
Sbjct: 62 RNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSW-KSGPGEVKHWK 120
Query: 606 DVCNSPRRQIAEW 618
D+ PR+ +A+W
Sbjct: 121 DMIARPRQPVAQW 133
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 24/130 (18%)
Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLL-PDKQKVKTRVLRKT 359
G++ + Y N ++V +IK R+L D G+SDPYVKV L+ DK+ K + + K
Sbjct: 3 GELLLSLCYNPSANSIIVNIIKARNLKAMDI-GGTSDPYVKVWLMYKDKRVEKKKTVTKK 61
Query: 360 RN--PIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDI 417
RN PI+NE F F I +L+ +T+ ++ D+ D+ SR+D+
Sbjct: 62 RNLNPIFNESFAFD-IPTEKLRETTI--IITVMDK-----------------DKLSRNDV 101
Query: 418 VGEVFYSLQS 427
+G+++ S +S
Sbjct: 102 IGKIYLSWKS 111
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 90/136 (66%), Gaps = 1/136 (0%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
G+I SL + P A + T+V+L+A+NL KMDV GL+DPYVK++L+ G+R+ KKKT +KK
Sbjct: 5 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 64
Query: 547 TLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHWTD 606
TLNP YNESF FEVP ++ KN+ IG++ +G + S+G L HW+D
Sbjct: 65 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN-STGAELRHWSD 123
Query: 607 VCNSPRRQIAEWLTYR 622
+ +PRR IA+W T +
Sbjct: 124 MLANPRRPIAQWHTLQ 139
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 24/132 (18%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRK 358
KLG I F ++Y L V +++ ++L D G SDPYVK+HL+ + +++K +
Sbjct: 3 KLGDICFSLRYVPTAGKLTVVILEAKNLKKMDV-GGLSDPYVKIHLMQNGKRLKKKKTTI 61
Query: 359 TR---NPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRD 415
+ NP YNE F+F F++ + + T V +D+ ++
Sbjct: 62 KKNTLNPYYNESFSFE----------------VPFEQIQKVQVVVT----VLDYDKIGKN 101
Query: 416 DIVGEVFYSLQS 427
D +G+VF S
Sbjct: 102 DAIGKVFVGYNS 113
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 90/136 (66%), Gaps = 1/136 (0%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
G+I SL + P A + T+V+L+A+NL KMDV GL+DPYVK++L+ G+R+ KKKT +KK
Sbjct: 4 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 63
Query: 547 TLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHWTD 606
TLNP YNESF FEVP ++ KN+ IG++ +G + S+G L HW+D
Sbjct: 64 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN-STGAELRHWSD 122
Query: 607 VCNSPRRQIAEWLTYR 622
+ +PRR IA+W T +
Sbjct: 123 MLANPRRPIAQWHTLQ 138
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 24/132 (18%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRK 358
KLG I F ++Y L V +++ ++L D G SDPYVK+HL+ + +++K +
Sbjct: 2 KLGDICFSLRYVPTAGKLTVVILEAKNLKKMDV-GGLSDPYVKIHLMQNGKRLKKKKTTI 60
Query: 359 TR---NPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRD 415
+ NP YNE F+F F++ + + T V +D+ ++
Sbjct: 61 KKNTLNPYYNESFSFE----------------VPFEQIQKVQVVVT----VLDYDKIGKN 100
Query: 416 DIVGEVFYSLQS 427
D +G+VF S
Sbjct: 101 DAIGKVFVGYNS 112
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 90/136 (66%), Gaps = 1/136 (0%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
G+I SL + P A + T+V+L+A+NL KMDV GL+DPYVK++L+ G+R+ KKKT +KK
Sbjct: 12 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 71
Query: 547 TLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHWTD 606
TLNP YNESF FEVP ++ KN+ IG++ +G + S+G L HW+D
Sbjct: 72 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN-STGAELRHWSD 130
Query: 607 VCNSPRRQIAEWLTYR 622
+ +PRR IA+W T +
Sbjct: 131 MLANPRRPIAQWHTLQ 146
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 24/132 (18%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRK 358
KLG I F ++Y L V +++ ++L D G SDPYVK+HL+ + +++K +
Sbjct: 10 KLGDICFSLRYVPTAGKLTVVILEAKNLKKMDV-GGLSDPYVKIHLMQNGKRLKKKKTTI 68
Query: 359 TR---NPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRD 415
+ NP YNE F+F F++ + + T V +D+ ++
Sbjct: 69 KKNTLNPYYNESFSFE----------------VPFEQIQKVQVVVT----VLDYDKIGKN 108
Query: 416 DIVGEVFYSLQS 427
D +G+VF S
Sbjct: 109 DAIGKVFVGYNS 120
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 96.3 bits (238), Expect = 5e-20, Method: Composition-based stats.
Identities = 47/97 (48%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 303 IFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRN 361
+FF ++Y + VV + + R L D S +SDPY+K+ +LP+K+ KVKTRVLRKT +
Sbjct: 11 LFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLD 70
Query: 362 PIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDI 398
P ++E FTF GI Q++ LHF + SFDR+SRDDI
Sbjct: 71 PAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDI 107
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 489 ILLSLCWQPAANRFTIVVLKARNLPKMDVTGL-ADPYVKVYLLYKGQRVAKKKTHVKKRT 547
+ SL + F + + +AR LP MD + +DPY+K+ +L ++ K KT V ++T
Sbjct: 11 LFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTIL--PEKKHKVKTRVLRKT 68
Query: 548 LNPVYNESFVFE-VPAXXXXXXXXXXXXXXXXRVTKNEVIGRL 589
L+P ++E+F F +P R +++++IG +
Sbjct: 69 LDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEV 111
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 87.0 bits (214), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/101 (46%), Positives = 68/101 (67%), Gaps = 3/101 (2%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQK-VKTRVLR 357
KLG++ + + Y + N L+V +I+ +L D G+SDPYVKV LLPDK+K +T+V R
Sbjct: 19 KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDM-GGTSDPYVKVFLLPDKKKKFETKVHR 77
Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDI 398
KT NP++NE+FTF + +L G TL V+ FDR+S+ DI
Sbjct: 78 KTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDI 117
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
G++ SL + N+ + +++A LP +D+ G +DPYVKV+LL ++ K +T V ++
Sbjct: 21 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKVHRK 78
Query: 547 TLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSS-GTALTHWT 605
TLNPV+NE F F+VP R +K+++IG + + G W
Sbjct: 79 TLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWR 138
Query: 606 DV 607
D+
Sbjct: 139 DL 140
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 86.7 bits (213), Expect = 4e-17, Method: Composition-based stats.
Identities = 47/101 (46%), Positives = 68/101 (67%), Gaps = 3/101 (2%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQK-VKTRVLR 357
KLG++ + + Y + N L+V +I+ +L D G+SDPYVKV LLPDK+K +T+V R
Sbjct: 2 KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDM-GGTSDPYVKVFLLPDKKKKFETKVHR 60
Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDI 398
KT NP++NE+FTF + +L G TL V+ FDR+S+ DI
Sbjct: 61 KTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDI 100
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
G++ SL + N+ + +++A LP +D+ G +DPYVKV+LL ++ K +T V ++
Sbjct: 4 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKVHRK 61
Query: 547 TLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSS-GTALTHWT 605
TLNPV+NE F F+VP R +K+++IG + + G W
Sbjct: 62 TLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWR 121
Query: 606 DV 607
D+
Sbjct: 122 DL 123
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 85.5 bits (210), Expect = 9e-17, Method: Composition-based stats.
Identities = 46/100 (46%), Positives = 67/100 (67%), Gaps = 3/100 (3%)
Query: 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQK-VKTRVLRK 358
LG++ + + Y + N L+V +I+ +L D G+SDPYVKV LLPDK+K +T+V RK
Sbjct: 28 LGKLQYSLDYDFQNNQLLVGIIQAAELPALDM-GGTSDPYVKVFLLPDKKKKFETKVHRK 86
Query: 359 TRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDI 398
T NP++NE+FTF + +L G TL V+ FDR+S+ DI
Sbjct: 87 TLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDI 125
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
G++ SL + N+ + +++A LP +D+ G +DPYVKV+LL ++ K +T V ++
Sbjct: 29 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKVHRK 86
Query: 547 TLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSS-GTALTHWT 605
TLNPV+NE F F+VP R +K+++IG + + G W
Sbjct: 87 TLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWR 146
Query: 606 DV 607
D+
Sbjct: 147 DL 148
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 68/101 (67%), Gaps = 3/101 (2%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQK-VKTRVLR 357
KLG++ + + Y + N L+V +I+ +L D G+SDPYVKV LLPDK+K +T+V R
Sbjct: 19 KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDM-GGTSDPYVKVFLLPDKKKKFETKVHR 77
Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDI 398
KT NP++NE+FTF + +L G TL V+ FDR+S+ DI
Sbjct: 78 KTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDI 117
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
G++ SL + N+ + +++A LP +D+ G +DPYVKV+LL ++ K +T V ++
Sbjct: 21 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKVHRK 78
Query: 547 TLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRL 589
TLNPV+NE F F+VP R +K+++IG
Sbjct: 79 TLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEF 121
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 66/99 (66%), Gaps = 2/99 (2%)
Query: 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRK 358
LG+I F + Y +E+ L V ++K ++L KD SG+SDP+VK++LLPDK+ K++T+V RK
Sbjct: 12 LGRIQFSVGYNFQESTLTVKIMKAQELPAKDF-SGTSDPFVKIYLLPDKKHKLETKVKRK 70
Query: 359 TRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD 397
NP +NE F F G ++ L+ V +DR+SR+D
Sbjct: 71 NLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRND 109
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
G I S+ + + T+ ++KA+ LP D +G +DP+VK+YLL + K +T VK++
Sbjct: 13 GRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLL--PDKKHKLETKVKRK 70
Query: 547 TLNPVYNESFVFE-VPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTAL-THW 604
LNP +NE+F+FE P R ++N+ IG + + +K T + T W
Sbjct: 71 NLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFW 130
Query: 605 TDV 607
D+
Sbjct: 131 KDL 133
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 5/113 (4%)
Query: 293 DGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD---KQ 349
D + LG + F + Y + + L T+I+ + L D+ +G +DPYVK+HLLP
Sbjct: 6 DSDEATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDS-NGLADPYVKLHLLPGASKSN 64
Query: 350 KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGST 401
K++T+ LR TRNP++NE + GIT ++ TL V D++ ++ IG T
Sbjct: 65 KLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGET 117
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
G + SL + + +++A+ L MD GLADPYVK++LL + K +T +
Sbjct: 14 GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN 73
Query: 547 TLNPVYNESFVF 558
T NPV+NE+ +
Sbjct: 74 TRNPVWNETLQY 85
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 5/113 (4%)
Query: 293 DGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD---KQ 349
D + LG + F + Y + + L T+I+ + L D+ +G +DPYVK+HLLP
Sbjct: 8 DSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDS-NGLADPYVKLHLLPGASKSN 66
Query: 350 KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGST 401
K++T+ LR TRNP++NE + GIT ++ TL V D++ ++ IG T
Sbjct: 67 KLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGET 119
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
G + SL + + +++A+ L MD GLADPYVK++LL + K +T +
Sbjct: 16 GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN 75
Query: 547 TLNPVYNESFVF 558
T NPV+NE+ +
Sbjct: 76 TRNPVWNETLQY 87
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 72.0 bits (175), Expect = 9e-13, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
RG+IL+SL + + +++ +L MD G +DP+VK++L + AK KT +KK
Sbjct: 1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK 60
Query: 546 RTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHWT 605
+TLNP +NE F +++ N+ IG L G + G L HW
Sbjct: 61 KTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL-GISAKGERLKHWY 119
Query: 606 DVCNSPRRQIAEW 618
+ + ++I W
Sbjct: 120 ECLKNKDKKIERW 132
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD---KQKVKTRVLR 357
G+I + Y ++ L+V +I+C L D +G SDP+VK+ L PD K K KT++ +
Sbjct: 2 GKILVSLMYSTQQGGLIVGIIRCVHLAAMDA-NGYSDPFVKLWLKPDMGKKAKHKTQIKK 60
Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFD-RYSRDDIG 399
KT NP +NEEF F I L +L V+ +D S D IG
Sbjct: 61 KTLNPEFNEEF-FYDIKHSDLAKKSLDISVWDYDIGKSNDYIG 102
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 72.0 bits (175), Expect = 9e-13, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
RG+IL+SL + + +++ +L MD G +DP+VK++L + AK KT +KK
Sbjct: 23 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK 82
Query: 546 RTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHWT 605
+TLNP +NE F +++ N+ IG L G + G L HW
Sbjct: 83 KTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL-GISAKGERLKHWY 141
Query: 606 DVCNSPRRQIAEW 618
+ + ++I W
Sbjct: 142 ECLKNKDKKIERW 154
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 7/121 (5%)
Query: 283 ALVNKETVDCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKV 342
AL +E V+ G+ E + G+I + Y ++ L+V +I+C L D +G SDP+VK+
Sbjct: 7 ALYEEEQVERIGDIEER-GKILVSLMYSTQQGGLIVGIIRCVHLAAMDA-NGYSDPFVKL 64
Query: 343 HLLPD---KQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFD-RYSRDDI 398
L PD K K KT++ +KT NP +NEEF F I L +L V+ +D S D I
Sbjct: 65 WLKPDMGKKAKHKTQIKKKTLNPEFNEEF-FYDIKHSDLAKKSLDISVWDYDIGKSNDYI 123
Query: 399 G 399
G
Sbjct: 124 G 124
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
RG+IL+SL + + +++ +L D G +DP+VK++L + AK KT +KK
Sbjct: 23 RGKILVSLXYSTQQGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKK 82
Query: 546 RTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHWT 605
+TLNP +NE F +++ N+ IG L G + G L HW
Sbjct: 83 KTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL-GISAKGERLKHWY 141
Query: 606 DVCNSPRRQIAEW 618
+ + ++I W
Sbjct: 142 ECLKNKDKKIERW 154
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 7/121 (5%)
Query: 283 ALVNKETVDCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKV 342
AL +E V+ G+ E + G+I + Y ++ L+V +I+C L D +G SDP+VK+
Sbjct: 7 ALYEEEQVERIGDIEER-GKILVSLXYSTQQGGLIVGIIRCVHLAAXDA-NGYSDPFVKL 64
Query: 343 HLLPD---KQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFD-RYSRDDI 398
L PD K K KT++ +KT NP +NEEF F I L +L V+ +D S D I
Sbjct: 65 WLKPDXGKKAKHKTQIKKKTLNPEFNEEF-FYDIKHSDLAKKSLDISVWDYDIGKSNDYI 123
Query: 399 G 399
G
Sbjct: 124 G 124
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 8/111 (7%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD---KQKVKTRV 355
K G+I+ K + +++ L VTV ++L D P+G SDPYVK+ L+PD + K KT+
Sbjct: 5 KRGRIYLKAEVADEK--LHVTVRDAKNLIPXD-PNGLSDPYVKLKLIPDPKNESKQKTKT 61
Query: 356 LRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVV 406
+R T NP +NE FTF + P K L ++ +DR +R+D +L F V
Sbjct: 62 IRSTLNPQWNESFTFK-LKPSD-KDRRLSVEIWDWDRTTRNDFXGSLSFGV 110
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 3/127 (2%)
Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 542
++ RG I L + A + + V A+NL D GL+DPYVK+ L+ + +K+KT
Sbjct: 3 TEKRGRIYLKA--EVADEKLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTK 60
Query: 543 VKKRTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALT 602
+ TLNP +NESF F++ R T+N+ G L G + +
Sbjct: 61 TIRSTLNPQWNESFTFKL-KPSDKDRRLSVEIWDWDRTTRNDFXGSLSFGVSELXKXPAS 119
Query: 603 HWTDVCN 609
W + N
Sbjct: 120 GWYKLLN 126
>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
pdb|3FDW|B Chain B, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
Length = 148
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLR 357
G+I F +KY+++ LVV V +C L D S+PYVK +LLPDK K KT + R
Sbjct: 10 GRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR 69
Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRD 396
T NP+Y+E + I L TL F V+ R+ R+
Sbjct: 70 DTVNPLYDETLRYE-IPESLLAQRTLQFSVWHHGRFGRN 107
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMD-VTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
G I SL ++ + V + L D ++PYVK YLL R K+KT +K+
Sbjct: 10 GRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR 69
Query: 546 RTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGD 594
T+NP+Y+E+ +E+P R +N +G ++ D
Sbjct: 70 DTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMD 118
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 8/111 (7%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD---KQKVKTRV 355
K G+I+ K + +++ L VTV ++L D P+G SDPYVK+ L+PD + K KT+
Sbjct: 3 KRGRIYLKAEVTDEK--LHVTVRDAKNLIPMD-PNGLSDPYVKLKLIPDPKNESKQKTKT 59
Query: 356 LRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVV 406
+R T NP +NE FTF + P K L ++ +DR +R+D +L F V
Sbjct: 60 IRSTLNPQWNESFTFK-LKPSD-KDRRLSVEIWDWDRTTRNDFMGSLSFGV 108
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 3/127 (2%)
Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 542
++ RG I L + + + V A+NL MD GL+DPYVK+ L+ + +K+KT
Sbjct: 1 TEKRGRIYLKA--EVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTK 58
Query: 543 VKKRTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALT 602
+ TLNP +NESF F++ R T+N+ +G L G + +
Sbjct: 59 TIRSTLNPQWNESFTFKL-KPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPAS 117
Query: 603 HWTDVCN 609
W + N
Sbjct: 118 GWYKLLN 124
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 481 IKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKK 540
+ ++ RG + L + P A+ + V +ARNL MD GL+DPYVK+ L+ + + K+K
Sbjct: 2 MHTERRGRLQLEI-RAPTADEIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQK 60
Query: 541 THVKKRTLNPVYNESFVFEV 560
T K TLNPV+NE+FVF +
Sbjct: 61 TRTVKATLNPVWNETFVFNL 80
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 6/92 (6%)
Query: 318 VTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGIT 374
VTV + R+L D P+G SDPYVK+ L+PD + K KTR ++ T NP++NE F F +
Sbjct: 24 VTVGEARNLIPMD-PNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFN-LK 81
Query: 375 PHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVV 406
P ++ L V+ +DR SR+D + F V
Sbjct: 82 PGDVE-RRLSVEVWDWDRTSRNDFMGAMSFGV 112
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 8/111 (7%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD---KQKVKTRV 355
K G+I+ K + +++ L VTV ++L D P+G SDPYVK+ L+PD + K KT+
Sbjct: 4 KRGRIYLKAEVTDEK--LHVTVRDAKNLIPMD-PNGLSDPYVKLKLIPDPKNESKQKTKT 60
Query: 356 LRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVV 406
+R T NP +NE FTF + P K L ++ +DR +R+D +L F V
Sbjct: 61 IRSTLNPQWNESFTFK-LKPSD-KDRRLSVEIWDWDRTTRNDFMGSLSFGV 109
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 3/127 (2%)
Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 542
++ RG I L + + + V A+NL MD GL+DPYVK+ L+ + +K+KT
Sbjct: 2 TEKRGRIYLKA--EVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTK 59
Query: 543 VKKRTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALT 602
+ TLNP +NESF F++ R T+N+ +G L G + +
Sbjct: 60 TIRSTLNPQWNESFTFKLKP-SDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPAS 118
Query: 603 HWTDVCN 609
W + N
Sbjct: 119 GWYKLLN 125
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
G+I L++ N+ +VV RNL G +DPYV++YLL +R ++KTHV K+
Sbjct: 11 GQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKK 69
Query: 547 TLNPVYNESFVFEV 560
TLNPV+++SF F V
Sbjct: 70 TLNPVFDQSFDFSV 83
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 9/82 (10%)
Query: 300 LGQIFFKIKYQEKENVLVVTVIKCRDL--FIKDTPSGSSDPYVKVHLLPDKQKV---KTR 354
LGQI I++ + N L+V V CR+L F +D SDPYV+++LLPDK++ KT
Sbjct: 10 LGQIQLTIRHSSQRNKLIVVVHACRNLIAFSED----GSDPYVRMYLLPDKRRSGRRKTH 65
Query: 355 VLRKTRNPIYNEEFTFTGITPH 376
V +KT NP++++ F F+ P
Sbjct: 66 VSKKTLNPVFDQSFDFSVSLPE 87
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 8/104 (7%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGS------SDPYVKVHLLPDKQKVK 352
+LG + F +Y N L V VI+ RDL + GS S+PYVK+ LLPD++ K
Sbjct: 11 QLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSK 70
Query: 353 -TRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSR 395
T V RKT+ P++ E +TF I + + TL V FD++SR
Sbjct: 71 QTGVKRKTQKPVFEERYTFE-IPFLEAQRRTLLLTVVDFDKFSR 113
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 11/113 (9%)
Query: 500 NRFTIVVLKARNLP--------KMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPV 551
N T+ V++AR+LP + D+ ++PYVK+ LL + K+T VK++T PV
Sbjct: 26 NHLTVRVIEARDLPPPISHDGSRQDMAH-SNPYVKICLLPDQKN--SKQTGVKRKTQKPV 82
Query: 552 YNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHW 604
+ E + FE+P + +++ VIG++ + + HW
Sbjct: 83 FEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHW 135
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 15/109 (13%)
Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV--------- 351
G+I +I Y L++ +++ R+L +D +G SDP+VKV+LLP + +V
Sbjct: 7 GEIQLQINYDLGN--LIIHILQARNLVPRDN-NGYSDPFVKVYLLPGRGQVMVVQNASAE 63
Query: 352 ---KTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD 397
+T+ ++K+ NP +N+ + I+ QL TL V+ +DR+S +D
Sbjct: 64 YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSND 112
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 11/82 (13%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLY-KGQRVA-------- 537
GEI L + + I +L+ARNL D G +DP+VKVYLL +GQ +
Sbjct: 7 GEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 538 KKKTHVKKRTLNPVYNESFVFE 559
K++T +++LNP +N++ +++
Sbjct: 65 KRRTKYVQKSLNPEWNQTVIYK 86
>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
pdb|2B3R|B Chain B, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
Length = 134
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 306 KIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV---KTRVLRKTRNP 362
K+ + L + V+ +DL +D +PYVK +LLPD K KT++ RKTRNP
Sbjct: 12 KLSVSYRNGTLFIMVMHIKDLVTED--GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNP 69
Query: 363 IYNEEFTFTGITPHQLKGSTLHFVVFS 389
+NE ++G + L+ L V S
Sbjct: 70 TFNEMLVYSGYSKETLRQRELQLSVLS 96
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 485 GRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVK 544
G G + LS+ ++ I+V+ ++L D +PYVK YLL + +K+KT +
Sbjct: 7 GSGAVKLSVSYRNGT--LFIMVMHIKDLVTEDGAD-PNPYVKTYLLPDTHKTSKRKTKIS 63
Query: 545 KRTLNPVYNESFVF 558
++T NP +NE V+
Sbjct: 64 RKTRNPTFNEMLVY 77
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 16/131 (12%)
Query: 292 CDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD---K 348
C + + G+I+ I+ VL+V V ++L D P+G SDPYVK+ L+PD +
Sbjct: 152 CGTDHTERRGRIY--IQAHIDREVLIVVVRDAKNLVPMD-PNGLSDPYVKLKLIPDPKSE 208
Query: 349 QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGST----LHFVVFSFDRYSRDDIGSTLHF 404
K KT+ ++ + NP +NE F F QLK S L ++ +D SR+D +L F
Sbjct: 209 SKQKTKTIKSSLNPEWNETFRF------QLKESDKDRRLSVEIWDWDLTSRNDFMGSLSF 262
Query: 405 VVFSFDRYSRD 415
+ + D
Sbjct: 263 GISELQKAGVD 273
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 504 IVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAX 563
+VV A+NL MD GL+DPYVK+ L+ + +K+KT K +LNP +NE+F F++
Sbjct: 176 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKES 235
Query: 564 XXXXXXXXXXXXXXXRVTKNEVIGRLDLGGDKSSGTALTHW 604
++N+ +G L G + + W
Sbjct: 236 DKDRRLSVEIWDWDL-TSRNDFMGSLSFGISELQKAGVDGW 275
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD---KQKVKTRVLR 357
G+I+ I+ VL+V V ++L D P+G SDPYVK+ L+PD + K KT+ ++
Sbjct: 20 GRIY--IQAHIDREVLIVVVRDAKNLVPMD-PNGLSDPYVKLKLIPDPKSESKQKTKTIK 76
Query: 358 KTRNPIYNEEFTFTGITPHQLKGST----LHFVVFSFDRYSRDDIGSTLHFVVFSFDRYS 413
+ NP +NE F F QLK S L ++ +D SR+D +L F + +
Sbjct: 77 CSLNPEWNETFRF------QLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG 130
Query: 414 RD 415
D
Sbjct: 131 VD 132
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 504 IVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 560
+VV A+NL MD GL+DPYVK+ L+ + +K+KT K +LNP +NE+F F++
Sbjct: 35 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 91
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 12/111 (10%)
Query: 294 GNAEGKLGQIFFKIKYQEKEN-VLVVTVIKCRDLFIKDTPSGSSDPYVKVHL-LPDKQK- 350
G A G LG+ + + E E+ +L V V+ DL KD G+SDPYVK+ L + D+ +
Sbjct: 1 GMATG-LGEPVYGLSEDEGESRILRVKVVSGIDLAKKDI-FGASDPYVKLSLYVADENRE 58
Query: 351 ---VKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDI 398
V+T+ ++KT NP +NEEF F + P + L F VF +R +RDD
Sbjct: 59 LALVQTKTIKKTLNPKWNEEFYFR-VNPSNHR---LLFEVFDENRLTRDDF 105
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 483 SQGRGEILLSLCWQPAANRFTIV-VLKARNLPKMDVTGLADPYVKV--YLLYKGQRVAKK 539
+ G GE + L +R V V+ +L K D+ G +DPYVK+ Y+ + + +A
Sbjct: 3 ATGLGEPVYGLSEDEGESRILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALV 62
Query: 540 KTHVKKRTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEVIGRLDL 591
+T K+TLNP +NE F F V R+T+++ +G++D+
Sbjct: 63 QTKTIKKTLNPKWNEEFYFRV---NPSNHRLLFEVFDENRLTRDDFLGQVDV 111
>pdb|2Q3X|A Chain A, The Rim1alpha C2b Domain
pdb|2Q3X|B Chain B, The Rim1alpha C2b Domain
Length = 171
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 500 NRFTIVVLKARNLP-KMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVF 558
+ + V++AR+L K PYVKVYLL G +AKKKT + ++TL+P+Y +S VF
Sbjct: 30 GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF 89
Query: 559 E 559
+
Sbjct: 90 D 90
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 305 FKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRVLRKTRN 361
+I ++K+ L V VI+ R L K + PYVKV+LL + K KTR+ RKT +
Sbjct: 21 IQIGXEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLD 80
Query: 362 PIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD 397
P+Y + F +G L +V+ Y R D
Sbjct: 81 PLYQQSLVFD----ESPQGKVLQVIVWG--DYGRXD 110
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
Query: 302 QIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ----KVKTRVLR 357
++F ++ +E ++ V VI L KD G+SDPYV+V L V+T+ ++
Sbjct: 8 EVFGLLEDEENSRIVRVRVIAGIGLAKKDI-LGASDPYVRVTLYDPMNGVLTSVQTKTIK 66
Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDI 398
K+ NP +NEE F + P Q + L F VF +R +RDD
Sbjct: 67 KSLNPKWNEEILFR-VHPQQHR---LLFEVFDENRLTRDDF 103
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 506 VLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKK-KTHVKKRTLNPVYNESFVFEVPAXX 564
V+ L K D+ G +DPYV+V L V +T K++LNP +NE +F V
Sbjct: 26 VIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRV---H 82
Query: 565 XXXXXXXXXXXXXXRVTKNEVIGRLDL 591
R+T+++ +G++D+
Sbjct: 83 PQQHRLLFEVFDENRLTRDDFLGQVDV 109
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD---KQKVKTRVLR 357
GQ+ K+ + + + L+VT++ +DL ++ +PYVK++ LPD K K +T+ ++
Sbjct: 5 GQLSIKLWFDKVGHQLIVTILGAKDLPSRED-GRPRNPYVKIYFLPDRSDKNKRRTKTVK 63
Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD 397
KT P +N+ F ++ + + + L ++ R ++
Sbjct: 64 KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEE 103
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 41/72 (56%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
G++ + L + ++ + +L A++LP + +PYVK+Y L K++T K+
Sbjct: 5 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 64
Query: 547 TLNPVYNESFVF 558
TL P +N++F++
Sbjct: 65 TLEPKWNQTFIY 76
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 40/71 (56%)
Query: 488 EILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRT 547
++ + L + ++ + +L A++LP + +PYVK+Y L K++T K+T
Sbjct: 9 QLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKT 68
Query: 548 LNPVYNESFVF 558
L P +N++F++
Sbjct: 69 LEPKWNQTFIY 79
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 302 QIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD---KQKVKTRVLRK 358
Q+ K+ + + + L+VT++ +DL ++ +PYVK++ LPD K K +T+ ++K
Sbjct: 9 QLSIKLWFDKVGHQLIVTILGAKDLPSRED-GRPRNPYVKIYFLPDRSDKNKRRTKTVKK 67
Query: 359 TRNPIYNEEFTFTGITPHQLKGSTLHFVVFS 389
T P +N+ F ++ + + + L ++
Sbjct: 68 TLEPKWNQTFIYSPVHRREFRERMLEITLWD 98
>pdb|3FBK|A Chain A, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
pdb|3FBK|B Chain B, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
Length = 153
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV---KTRVLR 357
GQ+ I Q++ VL++ +I+ + L K G+ DPYVK+ L+P+ ++ KT+ +
Sbjct: 16 GQLRLSIDAQDR--VLLLHIIEGKGLISKQ--PGTCDPYVKISLIPEDSRLRHQKTQTVP 71
Query: 358 KTRNPIYNEEFTF 370
R+P ++E F F
Sbjct: 72 DCRDPAFHEHFFF 84
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 482 KSQGRGEILLSLCWQPAANRFTIV-VLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKK 540
K QG G++ LS+ A +R ++ +++ + L G DPYVK+ L+ + R+ +K
Sbjct: 11 KVQGAGQLRLSI---DAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQK 66
Query: 541 THVKKRTLNPVYNESFVFEV 560
T +P ++E F F V
Sbjct: 67 TQTVPDCRDPAFHEHFFFPV 86
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 309 YQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ----KVKTRVLRKTRNPIY 364
+ + V+ V VI L KD G+SDPYV+V L V+T+ ++K+ NP +
Sbjct: 3 HNDDTRVVRVKVIAGIGLAKKDI-LGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKW 61
Query: 365 NEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDI 398
NEE F + P + + + F VF +R +RDD
Sbjct: 62 NEEILFR-VLPQRHR---ILFEVFDENRLTRDDF 91
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 504 IVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKK-KTHVKKRTLNPVYNESFVFEVPA 562
+ V+ L K D+ G +DPYV+V L + +T K++LNP +NE +F V
Sbjct: 12 VKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV-- 69
Query: 563 XXXXXXXXXXXXXXXXRVTKNEVIGRLDL 591
R+T+++ +G++D+
Sbjct: 70 -LPQRHRILFEVFDENRLTRDDFLGQVDV 97
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE 559
+ +I V+ A+ L D TG +DPYV V + G+ KK+T LNPV+ E+F FE
Sbjct: 18 KISITVVCAQGLQAKDKTGSSDPYVTVQV---GK--TKKRTKTIYGNLNPVWEENFHFE 71
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTF 370
+ +TV+ + L KD +GSSDPYV V + K K +T+ + NP++ E F F
Sbjct: 19 ISITVVCAQGLQAKD-KTGSSDPYVTVQV--GKTKKRTKTIYGNLNPVWEENFHF 70
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 498 AANRFTIVVLKARNLPKM---DVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNE 554
++++FT+VVL+A + K D+ DPYV++++ ++K+T +NPV+NE
Sbjct: 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPD--SRKRTRHFNNDINPVWNE 58
Query: 555 SFVF 558
+F F
Sbjct: 59 TFEF 62
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 8/50 (16%)
Query: 330 DTPSGSSDPYVKVHL--LPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQ 377
DTP DPYV++ + PD +K +TR NP++NE F F + P+Q
Sbjct: 25 DTP----DPYVELFISTTPDSRK-RTRHFNNDINPVWNETFEFI-LDPNQ 68
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 499 ANRFTIVVLKARNLPKM---DVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNES 555
+++FT+VVL+A + K D+ DPYV++++ ++K+T +NPV+NE+
Sbjct: 17 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPD--SRKRTRHFNNDINPVWNET 74
Query: 556 FVF 558
F F
Sbjct: 75 FEF 77
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
Query: 302 QIFFKIKYQEKENVLVVTVIKC-RDLF--IKDTPSGSSDPYVKVHL--LPDKQKVKTRVL 356
I + +Y K V+V+ K + F + DTP DPYV++ + PD +K +TR
Sbjct: 9 HIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTP----DPYVELFISTTPDSRK-RTRHF 63
Query: 357 RKTRNPIYNEEFTFTGITPHQ 377
NP++NE F F + P+Q
Sbjct: 64 NNDINPVWNETFEFI-LDPNQ 83
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 499 ANRFTIVVLKARNLPKM---DVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNES 555
+++FT+VVL+A + K D+ DPYV++++ ++K+T +NPV+NE+
Sbjct: 17 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPD--SRKRTRHFNNDINPVWNET 74
Query: 556 FVF 558
F F
Sbjct: 75 FEF 77
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
Query: 302 QIFFKIKYQEKENVLVVTVIKC-RDLF--IKDTPSGSSDPYVKVHL--LPDKQKVKTRVL 356
I + +Y K V+V+ K + F + DTP DPYV++ + PD +K +TR
Sbjct: 9 HIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTP----DPYVELFISTTPDSRK-RTRHF 63
Query: 357 RKTRNPIYNEEFTFTGITPHQ 377
NP++NE F F + P+Q
Sbjct: 64 NNDINPVWNETFEFI-LDPNQ 83
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTF 370
+L V V+K DL D SG SDP+ + L D+ ++T + K NP +N+ FTF
Sbjct: 14 ILQVKVLKAADLLAADF-SGKSDPFCLLELGNDR--LQTHTVYKNLNPEWNKVFTF 66
Score = 33.5 bits (75), Expect = 0.32, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 504 IVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 560
+ VLKA +L D +G +DP+ LL G + +TH + LNP +N+ F F +
Sbjct: 17 VKVLKAADLLAADFSGKSDPFC---LLELGND--RLQTHTVYKNLNPEWNKVFTFPI 68
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESF 556
+ + VL A+NL K D L DP+ K+ + GQ T K TL+P +N+ +
Sbjct: 6 KIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQ---CHSTDTVKNTLDPKWNQHY 58
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESF 556
+ + VL A+NL K D L DP+ KV + GQ T K TL+P +N+ +
Sbjct: 4 KLRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQ---CHSTDTVKNTLDPKWNQHY 56
>pdb|2D3E|A Chain A, Crystal Structure Of The C-Terminal Fragment Of Rabbit
Skeletal Alpha-Tropomyosin
pdb|2D3E|B Chain B, Crystal Structure Of The C-Terminal Fragment Of Rabbit
Skeletal Alpha-Tropomyosin
pdb|2D3E|C Chain C, Crystal Structure Of The C-Terminal Fragment Of Rabbit
Skeletal Alpha-Tropomyosin
pdb|2D3E|D Chain D, Crystal Structure Of The C-Terminal Fragment Of Rabbit
Skeletal Alpha-Tropomyosin
Length = 134
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 92 NQRVEEYKRQIKQLAVKLKXXXXXXXXXXKTVKKLQKEVDRLE 134
+Q+ ++Y+ +IK L+ KLK ++V KL+K +D LE
Sbjct: 65 SQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLE 107
>pdb|2EFR|A Chain A, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 1.8 Angstroms Resolution
pdb|2EFR|B Chain B, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 1.8 Angstroms Resolution
pdb|2EFR|C Chain C, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 1.8 Angstroms Resolution
pdb|2EFR|D Chain D, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 1.8 Angstroms Resolution
pdb|2EFS|A Chain A, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 2.0 Angstroms Resolution
pdb|2EFS|B Chain B, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 2.0 Angstroms Resolution
pdb|2EFS|C Chain C, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 2.0 Angstroms Resolution
pdb|2EFS|D Chain D, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 2.0 Angstroms Resolution
Length = 155
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 92 NQRVEEYKRQIKQLAVKLKXXXXXXXXXXKTVKKLQKEVDRLE 134
+Q+ ++Y+ +IK L+ KLK ++V KL+K +D LE
Sbjct: 69 SQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLE 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,164,550
Number of Sequences: 62578
Number of extensions: 552359
Number of successful extensions: 1427
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1205
Number of HSP's gapped (non-prelim): 139
length of query: 622
length of database: 14,973,337
effective HSP length: 105
effective length of query: 517
effective length of database: 8,402,647
effective search space: 4344168499
effective search space used: 4344168499
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)