Query psy1415
Match_columns 622
No_of_seqs 482 out of 2449
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 20:45:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1415.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1415hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1028|consensus 100.0 5.3E-41 1.1E-45 359.9 28.2 269 297-622 150-419 (421)
2 KOG1028|consensus 100.0 1.7E-33 3.7E-38 302.0 19.6 250 129-427 141-393 (421)
3 COG5038 Ca2+-dependent lipid-b 100.0 2E-26 4.4E-31 258.5 30.3 382 190-612 457-1146(1227)
4 cd08692 C2B_Tac2-N C2 domain s 100.0 7.4E-28 1.6E-32 216.5 15.0 133 488-621 2-135 (135)
5 cd08407 C2B_Synaptotagmin-13 C 100.0 4.3E-28 9.4E-33 221.2 13.3 136 486-622 1-138 (138)
6 cd08406 C2B_Synaptotagmin-12 C 100.0 7.8E-28 1.7E-32 219.6 14.1 136 486-622 1-136 (136)
7 cd08408 C2B_Synaptotagmin-14_1 99.9 7.5E-26 1.6E-30 207.4 14.5 135 487-621 2-137 (138)
8 cd08410 C2B_Synaptotagmin-17 C 99.9 2E-25 4.2E-30 204.4 13.9 135 487-621 1-135 (135)
9 cd08409 C2B_Synaptotagmin-15 C 99.9 3.1E-25 6.7E-30 203.4 15.2 135 486-621 1-136 (137)
10 cd08402 C2B_Synaptotagmin-1 C2 99.9 3.5E-25 7.6E-30 203.1 14.4 135 486-621 1-135 (136)
11 cd08404 C2B_Synaptotagmin-4 C2 99.9 6.1E-25 1.3E-29 201.5 14.5 135 486-621 1-135 (136)
12 cd08405 C2B_Synaptotagmin-7 C2 99.9 7.9E-25 1.7E-29 200.8 13.3 136 486-622 1-136 (136)
13 cd08403 C2B_Synaptotagmin-3-5- 99.9 1.5E-24 3.2E-29 198.5 14.0 134 487-621 1-134 (134)
14 cd08384 C2B_Rabphilin_Doc2 C2 99.9 2.3E-24 5E-29 196.9 13.0 133 488-621 1-133 (133)
15 cd00276 C2B_Synaptotagmin C2 d 99.9 2.7E-23 5.8E-28 190.0 15.1 134 487-621 1-134 (134)
16 cd08677 C2A_Synaptotagmin-13 C 99.9 2.5E-23 5.5E-28 182.8 11.9 117 487-607 1-118 (118)
17 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.9 1.9E-22 4.1E-27 190.0 13.8 137 486-622 1-162 (162)
18 KOG1013|consensus 99.9 8.4E-24 1.8E-28 209.2 4.4 274 297-621 76-353 (362)
19 cd08393 C2A_SLP-1_2 C2 domain 99.9 9.5E-22 2.1E-26 177.5 11.2 122 486-607 1-124 (125)
20 cd08680 C2_Kibra C2 domain fou 99.9 1.1E-21 2.4E-26 176.1 11.4 120 488-607 2-124 (124)
21 cd08392 C2A_SLP-3 C2 domain fi 99.9 1.9E-21 4.1E-26 175.9 11.7 122 486-607 1-127 (128)
22 cd08381 C2B_PI3K_class_II C2 d 99.9 3.1E-21 6.7E-26 173.3 11.4 118 487-607 2-121 (122)
23 cd08677 C2A_Synaptotagmin-13 C 99.9 8.4E-21 1.8E-25 166.8 13.4 105 301-429 1-107 (118)
24 cd04029 C2A_SLP-4_5 C2 domain 99.8 6E-21 1.3E-25 172.2 11.8 122 486-607 1-124 (125)
25 KOG2059|consensus 99.8 5.9E-21 1.3E-25 204.5 12.8 233 169-429 3-240 (800)
26 cd04028 C2B_RIM1alpha C2 domai 99.8 1.4E-20 3.1E-25 173.0 13.0 123 483-610 14-139 (146)
27 cd08393 C2A_SLP-1_2 C2 domain 99.8 6.7E-20 1.4E-24 165.5 14.2 111 300-431 1-115 (125)
28 cd08392 C2A_SLP-3 C2 domain fi 99.8 7.2E-20 1.6E-24 165.6 14.4 122 300-442 1-127 (128)
29 cd04029 C2A_SLP-4_5 C2 domain 99.8 1.2E-19 2.7E-24 163.6 15.4 110 301-430 2-114 (125)
30 KOG1003|consensus 99.8 2E-22 4.3E-27 185.3 -2.9 97 41-138 79-182 (205)
31 cd08387 C2A_Synaptotagmin-8 C2 99.8 3.7E-20 8E-25 167.0 11.4 121 486-608 2-123 (124)
32 cd08385 C2A_Synaptotagmin-1-5- 99.8 5E-20 1.1E-24 166.1 11.7 121 486-608 2-123 (124)
33 cd08521 C2A_SLP C2 domain firs 99.8 5.4E-20 1.2E-24 165.5 11.4 121 487-607 1-123 (123)
34 cd04031 C2A_RIM1alpha C2 domai 99.8 4.7E-20 1E-24 166.4 10.9 122 486-607 2-124 (125)
35 cd04030 C2C_KIAA1228 C2 domain 99.8 7.8E-20 1.7E-24 165.5 12.0 123 485-607 1-126 (127)
36 cd08388 C2A_Synaptotagmin-4-11 99.8 5.7E-19 1.2E-23 160.0 17.0 112 300-431 2-115 (128)
37 cd08680 C2_Kibra C2 domain fou 99.8 1.5E-19 3.2E-24 162.3 12.8 107 302-429 2-112 (124)
38 cd08381 C2B_PI3K_class_II C2 d 99.8 3.2E-19 7E-24 160.2 14.4 106 301-429 2-110 (122)
39 KOG2059|consensus 99.8 5.9E-20 1.3E-24 196.9 11.1 236 314-614 5-258 (800)
40 cd08389 C2A_Synaptotagmin-14_1 99.8 4.1E-19 8.9E-24 160.0 14.6 109 300-429 2-111 (124)
41 cd08388 C2A_Synaptotagmin-4-11 99.8 2.9E-19 6.3E-24 161.9 13.6 110 485-596 1-112 (128)
42 cd08685 C2_RGS-like C2 domain 99.8 1.8E-19 4E-24 161.0 10.5 117 487-607 1-119 (119)
43 cd08385 C2A_Synaptotagmin-1-5- 99.8 1.4E-18 3E-23 156.7 15.1 110 299-429 1-111 (124)
44 cd08387 C2A_Synaptotagmin-8 C2 99.8 1.3E-18 2.9E-23 156.8 15.0 109 300-429 2-111 (124)
45 cd08407 C2B_Synaptotagmin-13 C 99.8 7.3E-19 1.6E-23 160.5 13.1 107 300-427 1-112 (138)
46 cd08406 C2B_Synaptotagmin-12 C 99.8 6.8E-19 1.5E-23 160.7 12.9 107 300-427 1-110 (136)
47 cd08389 C2A_Synaptotagmin-14_1 99.8 4.8E-19 1E-23 159.6 10.8 120 486-608 2-123 (124)
48 KOG0696|consensus 99.8 1E-19 2.2E-24 185.2 6.3 176 435-613 111-292 (683)
49 cd08386 C2A_Synaptotagmin-7 C2 99.8 8.7E-19 1.9E-23 158.2 11.2 121 486-608 2-124 (125)
50 cd04028 C2B_RIM1alpha C2 domai 99.8 5.8E-18 1.3E-22 155.7 16.3 109 297-429 14-125 (146)
51 cd04030 C2C_KIAA1228 C2 domain 99.8 6.4E-18 1.4E-22 152.9 15.3 109 300-429 2-115 (127)
52 KOG1013|consensus 99.8 4.8E-19 1E-23 175.6 8.0 253 129-425 67-326 (362)
53 cd04031 C2A_RIM1alpha C2 domai 99.8 6E-18 1.3E-22 152.7 14.6 109 300-428 2-113 (125)
54 cd08386 C2A_Synaptotagmin-7 C2 99.8 7.1E-18 1.5E-22 152.2 15.0 110 300-429 2-112 (125)
55 cd08390 C2A_Synaptotagmin-15-1 99.8 2.4E-18 5.1E-23 154.9 11.6 120 487-608 1-122 (123)
56 cd08521 C2A_SLP C2 domain firs 99.8 1.3E-17 2.8E-22 150.0 14.6 109 301-429 1-112 (123)
57 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.8 9.6E-18 2.1E-22 158.0 14.2 113 300-432 1-128 (162)
58 cd08692 C2B_Tac2-N C2 domain s 99.7 1.9E-17 4.2E-22 149.1 14.3 106 301-428 1-110 (135)
59 cd08402 C2B_Synaptotagmin-1 C2 99.7 1.9E-17 4.1E-22 151.8 14.5 108 300-428 1-111 (136)
60 cd08408 C2B_Synaptotagmin-14_1 99.7 1.2E-17 2.6E-22 153.1 13.0 108 300-428 1-112 (138)
61 cd08390 C2A_Synaptotagmin-15-1 99.7 3.3E-17 7.2E-22 147.4 15.0 110 301-430 1-111 (123)
62 cd08395 C2C_Munc13 C2 domain t 99.7 2.1E-17 4.5E-22 147.2 13.0 109 501-610 1-113 (120)
63 cd08404 C2B_Synaptotagmin-4 C2 99.7 2.4E-17 5.2E-22 151.1 13.2 107 300-427 1-110 (136)
64 cd04009 C2B_Munc13-like C2 dom 99.7 2.5E-17 5.3E-22 150.4 12.1 112 486-597 2-117 (133)
65 cd08410 C2B_Synaptotagmin-17 C 99.7 3.3E-17 7.1E-22 150.0 12.9 107 301-428 1-110 (135)
66 cd04026 C2_PKC_alpha_gamma C2 99.7 2.1E-17 4.6E-22 150.5 11.3 127 486-615 1-127 (131)
67 cd08405 C2B_Synaptotagmin-7 C2 99.7 3.8E-17 8.3E-22 149.8 13.0 108 300-428 1-111 (136)
68 cd08384 C2B_Rabphilin_Doc2 C2 99.7 5E-17 1.1E-21 148.4 13.3 105 302-427 1-108 (133)
69 cd08685 C2_RGS-like C2 domain 99.7 7.2E-17 1.6E-21 144.2 13.2 104 301-429 1-108 (119)
70 cd08409 C2B_Synaptotagmin-15 C 99.7 4E-17 8.6E-22 149.7 11.7 107 300-428 1-110 (137)
71 cd08682 C2_Rab11-FIP_classI C2 99.7 4.3E-17 9.4E-22 147.4 11.7 106 502-612 1-112 (126)
72 cd04016 C2_Tollip C2 domain pr 99.7 5.5E-17 1.2E-21 144.8 12.0 105 500-613 2-109 (121)
73 cd08403 C2B_Synaptotagmin-3-5- 99.7 8.8E-17 1.9E-21 147.0 12.9 106 301-427 1-109 (134)
74 cd04009 C2B_Munc13-like C2 dom 99.7 1.5E-16 3.3E-21 145.2 13.5 110 299-429 1-117 (133)
75 cd08682 C2_Rab11-FIP_classI C2 99.7 1.6E-16 3.5E-21 143.7 13.2 91 316-429 1-94 (126)
76 cd04035 C2A_Rabphilin_Doc2 C2 99.7 3.5E-16 7.6E-21 140.8 15.2 110 300-430 1-113 (123)
77 cd04035 C2A_Rabphilin_Doc2 C2 99.7 1.2E-16 2.5E-21 144.0 11.6 111 486-597 1-112 (123)
78 cd04010 C2B_RasA3 C2 domain se 99.7 8.5E-17 1.8E-21 148.8 10.4 109 501-611 1-124 (148)
79 cd08395 C2C_Munc13 C2 domain t 99.7 3.1E-16 6.8E-21 139.6 13.1 96 315-431 1-101 (120)
80 cd08688 C2_KIAA0528-like C2 do 99.7 8.4E-17 1.8E-21 141.9 9.3 103 502-609 1-109 (110)
81 cd04022 C2A_MCTP_PRT_plant C2 99.7 3E-16 6.5E-21 142.1 13.0 93 315-429 1-94 (127)
82 cd08379 C2D_MCTP_PRT_plant C2 99.7 1.1E-16 2.4E-21 143.8 9.6 101 501-609 1-111 (126)
83 KOG0696|consensus 99.7 2.7E-17 5.9E-22 167.6 6.3 116 290-429 158-276 (683)
84 KOG1030|consensus 99.7 1.7E-16 3.6E-21 144.9 10.3 98 499-605 5-102 (168)
85 cd04018 C2C_Ferlin C2 domain t 99.7 9.8E-17 2.1E-21 148.7 8.8 108 501-614 1-130 (151)
86 cd04041 C2A_fungal C2 domain f 99.7 1.4E-16 3E-21 140.8 9.1 105 500-608 1-107 (111)
87 cd08375 C2_Intersectin C2 doma 99.7 5.5E-16 1.2E-20 141.8 12.4 96 495-597 10-105 (136)
88 cd04016 C2_Tollip C2 domain pr 99.7 1.3E-15 2.9E-20 135.9 14.3 89 314-429 2-92 (121)
89 COG5038 Ca2+-dependent lipid-b 99.7 5.1E-15 1.1E-19 167.6 22.2 253 312-598 434-802 (1227)
90 cd00276 C2B_Synaptotagmin C2 d 99.7 1.4E-15 3.1E-20 138.7 14.6 106 301-427 1-109 (134)
91 cd04022 C2A_MCTP_PRT_plant C2 99.7 3E-16 6.4E-21 142.1 9.1 105 501-610 1-109 (127)
92 cd04042 C2A_MCTP_PRT C2 domain 99.6 8.3E-16 1.8E-20 138.0 11.2 105 501-612 1-106 (121)
93 cd08676 C2A_Munc13-like C2 dom 99.6 5E-16 1.1E-20 144.2 9.5 107 495-607 23-153 (153)
94 KOG1030|consensus 99.6 8.9E-16 1.9E-20 140.2 10.9 91 313-429 5-95 (168)
95 cd04036 C2_cPLA2 C2 domain pre 99.6 6.8E-16 1.5E-20 138.1 9.6 109 502-615 2-111 (119)
96 cd04045 C2C_Tricalbin-like C2 99.6 1.6E-15 3.5E-20 135.8 11.8 115 500-621 1-115 (120)
97 cd08376 C2B_MCTP_PRT C2 domain 99.6 9.5E-16 2.1E-20 136.4 10.1 106 501-613 1-107 (116)
98 cd08681 C2_fungal_Inn1p-like C 99.6 1.1E-15 2.3E-20 136.6 9.8 104 500-611 1-106 (118)
99 cd04050 C2B_Synaptotagmin-like 99.6 2.3E-15 5E-20 131.5 11.6 99 502-610 2-103 (105)
100 cd08401 C2A_RasA2_RasA3 C2 dom 99.6 5.4E-15 1.2E-19 132.6 14.0 89 316-429 2-91 (121)
101 cd04041 C2A_fungal C2 domain f 99.6 1.9E-15 4.2E-20 133.4 10.8 95 314-429 1-98 (111)
102 cd08379 C2D_MCTP_PRT_plant C2 99.6 5.6E-15 1.2E-19 132.8 13.8 89 315-429 1-98 (126)
103 cd04019 C2C_MCTP_PRT_plant C2 99.6 1.5E-15 3.2E-20 141.3 10.4 105 501-612 1-111 (150)
104 cd04025 C2B_RasA1_RasA4 C2 dom 99.6 1.5E-15 3.3E-20 136.6 10.0 104 501-611 1-105 (123)
105 KOG1327|consensus 99.6 2.4E-15 5.3E-20 160.5 13.0 184 212-429 44-235 (529)
106 cd04019 C2C_MCTP_PRT_plant C2 99.6 7.6E-15 1.6E-19 136.5 14.8 89 316-429 2-91 (150)
107 cd04039 C2_PSD C2 domain prese 99.6 2.6E-15 5.7E-20 131.7 11.0 91 500-596 1-95 (108)
108 cd04010 C2B_RasA3 C2 domain se 99.6 5.1E-15 1.1E-19 137.0 12.8 105 315-429 1-108 (148)
109 cd08391 C2A_C2C_Synaptotagmin_ 99.6 3E-15 6.4E-20 134.1 10.9 108 500-615 1-115 (121)
110 cd04038 C2_ArfGAP C2 domain pr 99.6 3.5E-15 7.7E-20 137.6 11.4 112 500-621 2-113 (145)
111 cd04042 C2A_MCTP_PRT C2 domain 99.6 1.2E-14 2.5E-19 130.5 14.2 89 315-429 1-90 (121)
112 cd08688 C2_KIAA0528-like C2 do 99.6 3.9E-15 8.4E-20 131.3 10.6 93 316-430 1-94 (110)
113 cd04024 C2A_Synaptotagmin-like 99.6 2.8E-15 6.1E-20 135.7 9.6 104 500-610 1-110 (128)
114 cd04026 C2_PKC_alpha_gamma C2 99.6 1.3E-14 2.8E-19 132.1 13.7 106 300-429 1-109 (131)
115 cd04025 C2B_RasA1_RasA4 C2 dom 99.6 1.2E-14 2.6E-19 130.8 13.1 90 315-429 1-90 (123)
116 cd08681 C2_fungal_Inn1p-like C 99.6 7.3E-15 1.6E-19 131.2 11.5 90 314-429 1-91 (118)
117 cd04015 C2_plant_PLD C2 domain 99.6 6.4E-15 1.4E-19 138.3 11.5 108 500-615 7-145 (158)
118 cd08376 C2B_MCTP_PRT C2 domain 99.6 2.1E-14 4.5E-19 127.8 14.1 100 316-442 2-101 (116)
119 cd08401 C2A_RasA2_RasA3 C2 dom 99.6 4.5E-15 9.8E-20 133.1 9.7 101 502-609 2-104 (121)
120 cd04054 C2A_Rasal1_RasA4 C2 do 99.6 1.5E-14 3.3E-19 129.7 13.0 102 502-610 2-105 (121)
121 cd08375 C2_Intersectin C2 doma 99.6 1.8E-14 3.8E-19 131.9 13.6 94 311-429 12-105 (136)
122 cd04037 C2E_Ferlin C2 domain f 99.6 1.3E-14 2.9E-19 130.7 12.1 106 501-613 1-106 (124)
123 cd04033 C2_NEDD4_NEDD4L C2 dom 99.6 1.1E-14 2.4E-19 132.8 11.8 107 501-610 1-116 (133)
124 cd08378 C2B_MCTP_PRT_plant C2 99.6 5.8E-15 1.2E-19 132.4 9.6 100 501-612 1-106 (121)
125 cd04039 C2_PSD C2 domain prese 99.6 1.2E-14 2.6E-19 127.6 11.1 93 314-429 1-96 (108)
126 cd04011 C2B_Ferlin C2 domain s 99.6 1.2E-14 2.7E-19 128.3 11.1 90 498-596 2-93 (111)
127 cd08678 C2_C21orf25-like C2 do 99.6 2.9E-14 6.4E-19 128.9 13.5 88 316-429 1-88 (126)
128 cd08377 C2C_MCTP_PRT C2 domain 99.6 9E-15 2E-19 130.7 9.8 103 500-611 1-103 (119)
129 cd04027 C2B_Munc13 C2 domain s 99.6 1.2E-14 2.7E-19 131.5 10.8 112 501-621 2-125 (127)
130 cd04033 C2_NEDD4_NEDD4L C2 dom 99.6 2.9E-14 6.2E-19 130.1 13.1 90 316-429 2-96 (133)
131 cd04036 C2_cPLA2 C2 domain pre 99.6 3.5E-14 7.5E-19 127.0 12.9 90 316-429 2-92 (119)
132 cd04054 C2A_Rasal1_RasA4 C2 do 99.6 4.7E-14 1E-18 126.6 13.4 88 316-429 2-90 (121)
133 cd04017 C2D_Ferlin C2 domain f 99.6 2.8E-14 6.2E-19 130.5 12.2 103 501-608 2-116 (135)
134 cd08678 C2_C21orf25-like C2 do 99.6 1.2E-14 2.5E-19 131.5 9.2 102 502-611 1-103 (126)
135 cd08690 C2_Freud-1 C2 domain f 99.6 2.1E-14 4.5E-19 133.2 11.0 107 503-609 5-121 (155)
136 cd04043 C2_Munc13_fungal C2 do 99.6 6.7E-14 1.4E-18 126.4 14.1 105 501-609 2-110 (126)
137 cd08675 C2B_RasGAP C2 domain s 99.6 1.5E-14 3.3E-19 132.5 9.9 108 502-611 1-122 (137)
138 cd04024 C2A_Synaptotagmin-like 99.5 6.5E-14 1.4E-18 126.8 13.5 91 314-429 1-93 (128)
139 cd08378 C2B_MCTP_PRT_plant C2 99.5 4.8E-14 1E-18 126.4 12.3 84 316-429 2-85 (121)
140 cd04050 C2B_Synaptotagmin-like 99.5 4.4E-14 9.4E-19 123.5 11.6 87 316-430 2-88 (105)
141 cd04014 C2_PKC_epsilon C2 doma 99.5 4.9E-14 1.1E-18 128.5 12.3 107 499-615 3-122 (132)
142 cd08400 C2_Ras_p21A1 C2 domain 99.5 1.2E-13 2.5E-18 124.9 14.3 87 314-429 4-91 (126)
143 cd08382 C2_Smurf-like C2 domai 99.5 2.7E-14 5.9E-19 128.5 10.1 101 502-610 2-106 (123)
144 cd04032 C2_Perforin C2 domain 99.5 4E-14 8.6E-19 127.4 11.1 91 497-594 25-115 (127)
145 cd04048 C2A_Copine C2 domain f 99.5 2.5E-14 5.5E-19 128.1 9.8 102 505-608 5-113 (120)
146 cd08377 C2C_MCTP_PRT C2 domain 99.5 9.8E-14 2.1E-18 124.0 13.2 90 314-429 1-90 (119)
147 cd04044 C2A_Tricalbin-like C2 99.5 6.9E-14 1.5E-18 125.8 12.3 93 314-429 2-94 (124)
148 cd08400 C2_Ras_p21A1 C2 domain 99.5 5E-14 1.1E-18 127.3 11.2 101 500-610 4-105 (126)
149 cd04011 C2B_Ferlin C2 domain s 99.5 7.5E-14 1.6E-18 123.3 12.1 91 313-429 3-94 (111)
150 cd04049 C2_putative_Elicitor-r 99.5 3.8E-14 8.3E-19 127.7 10.4 108 500-612 1-111 (124)
151 cd04032 C2_Perforin C2 domain 99.5 5.7E-14 1.2E-18 126.4 11.1 93 312-429 26-118 (127)
152 cd08391 C2A_C2C_Synaptotagmin_ 99.5 1.4E-13 3.1E-18 123.2 12.9 91 314-429 1-96 (121)
153 cd04018 C2C_Ferlin C2 domain t 99.5 8.4E-14 1.8E-18 129.1 11.4 93 315-431 1-107 (151)
154 cd04043 C2_Munc13_fungal C2 do 99.5 3.2E-13 7E-18 121.9 15.0 106 315-443 2-109 (126)
155 cd08382 C2_Smurf-like C2 domai 99.5 2E-13 4.4E-18 122.8 13.6 88 316-429 2-91 (123)
156 cd08394 C2A_Munc13 C2 domain f 99.5 1.3E-13 2.8E-18 122.6 11.5 88 314-432 2-89 (127)
157 cd08394 C2A_Munc13 C2 domain f 99.5 9.2E-14 2E-18 123.6 10.3 96 500-608 2-100 (127)
158 cd04046 C2_Calpain C2 domain p 99.5 9E-14 1.9E-18 125.7 10.4 100 499-608 2-101 (126)
159 cd04047 C2B_Copine C2 domain s 99.5 8.7E-14 1.9E-18 122.6 9.8 92 503-597 3-99 (110)
160 cd04017 C2D_Ferlin C2 domain f 99.5 2.8E-13 6.1E-18 124.0 13.4 90 315-424 2-95 (135)
161 cd08373 C2A_Ferlin C2 domain f 99.5 2.9E-13 6.3E-18 122.5 13.2 85 320-429 2-86 (127)
162 cd04038 C2_ArfGAP C2 domain pr 99.5 1.9E-13 4.1E-18 126.1 11.6 89 314-429 2-90 (145)
163 cd04051 C2_SRC2_like C2 domain 99.5 5.5E-14 1.2E-18 126.8 7.8 108 501-612 1-117 (125)
164 cd04027 C2B_Munc13 C2 domain s 99.5 3.5E-13 7.7E-18 122.0 12.9 89 315-429 2-101 (127)
165 cd08686 C2_ABR C2 domain in th 99.5 1.7E-13 3.8E-18 120.2 9.9 84 502-594 1-91 (118)
166 cd08373 C2A_Ferlin C2 domain f 99.5 1.4E-13 3.1E-18 124.6 9.7 102 506-614 2-104 (127)
167 cd04046 C2_Calpain C2 domain p 99.5 8.1E-13 1.7E-17 119.4 14.6 90 313-429 2-91 (126)
168 cd04014 C2_PKC_epsilon C2 doma 99.5 7.4E-13 1.6E-17 120.7 13.9 91 313-430 3-104 (132)
169 cd04040 C2D_Tricalbin-like C2 99.5 2E-13 4.3E-18 121.2 9.7 105 502-612 1-106 (115)
170 cd04047 C2B_Copine C2 domain s 99.5 3.4E-13 7.3E-18 118.8 10.8 94 316-429 2-99 (110)
171 cd08691 C2_NEDL1-like C2 domai 99.5 6.8E-13 1.5E-17 121.1 13.1 105 501-610 2-122 (137)
172 cd04044 C2A_Tricalbin-like C2 99.5 3.6E-13 7.7E-18 121.1 10.9 93 500-598 2-95 (124)
173 KOG1326|consensus 99.5 1.7E-13 3.7E-18 152.5 10.1 384 173-594 208-702 (1105)
174 cd08383 C2A_RasGAP C2 domain ( 99.5 5.1E-13 1.1E-17 118.9 11.4 102 502-612 2-103 (117)
175 cd04015 C2_plant_PLD C2 domain 99.4 1.6E-12 3.6E-17 122.0 14.7 91 313-429 6-126 (158)
176 cd04037 C2E_Ferlin C2 domain f 99.4 6.6E-13 1.4E-17 119.7 11.2 89 316-429 2-92 (124)
177 cd04049 C2_putative_Elicitor-r 99.4 1.1E-12 2.3E-17 118.3 12.3 95 314-430 1-96 (124)
178 cd04051 C2_SRC2_like C2 domain 99.4 1E-12 2.2E-17 118.5 11.4 94 316-430 2-97 (125)
179 cd08691 C2_NEDL1-like C2 domai 99.4 3.9E-12 8.6E-17 116.1 14.7 88 316-429 3-105 (137)
180 cd08675 C2B_RasGAP C2 domain s 99.4 1.2E-12 2.5E-17 120.0 11.3 105 316-429 1-107 (137)
181 cd08676 C2A_Munc13-like C2 dom 99.4 8.2E-13 1.8E-17 122.7 10.3 94 309-429 23-143 (153)
182 PF00261 Tropomyosin: Tropomyo 99.4 3.8E-15 8.3E-20 149.1 -5.8 95 42-137 112-213 (237)
183 cd04045 C2C_Tricalbin-like C2 99.4 1.7E-12 3.6E-17 116.3 11.8 90 314-429 1-91 (120)
184 cd00275 C2_PLC_like C2 domain 99.4 8.7E-13 1.9E-17 119.3 9.7 108 501-613 3-114 (128)
185 cd04048 C2A_Copine C2 domain f 99.4 1.7E-12 3.6E-17 116.3 11.2 90 318-430 4-102 (120)
186 cd08690 C2_Freud-1 C2 domain f 99.4 4.4E-12 9.6E-17 117.7 14.2 101 316-431 4-110 (155)
187 cd04040 C2D_Tricalbin-like C2 99.4 3.2E-12 6.9E-17 113.4 12.6 90 316-429 1-90 (115)
188 PF00168 C2: C2 domain; Inter 99.4 4.1E-12 8.9E-17 105.5 9.8 85 502-590 1-85 (85)
189 cd08383 C2A_RasGAP C2 domain ( 99.4 1.2E-11 2.7E-16 110.0 13.4 82 316-424 2-84 (117)
190 cd04052 C2B_Tricalbin-like C2 99.4 2.6E-12 5.7E-17 113.4 8.9 97 517-620 9-110 (111)
191 cd08686 C2_ABR C2 domain in th 99.4 4.9E-12 1.1E-16 111.1 10.4 82 316-427 1-92 (118)
192 cd08374 C2F_Ferlin C2 domain s 99.3 4E-12 8.7E-17 114.7 9.9 93 502-596 2-121 (133)
193 cd04013 C2_SynGAP_like C2 doma 99.3 3.3E-12 7.1E-17 117.3 9.1 103 500-614 11-118 (146)
194 cd04052 C2B_Tricalbin-like C2 99.3 5.9E-12 1.3E-16 111.1 10.3 80 325-429 2-82 (111)
195 cd04021 C2_E3_ubiquitin_ligase 99.3 1.1E-11 2.4E-16 111.8 11.9 99 501-608 3-107 (125)
196 cd04021 C2_E3_ubiquitin_ligase 99.3 2.2E-11 4.7E-16 109.9 13.3 88 314-429 2-90 (125)
197 cd04013 C2_SynGAP_like C2 doma 99.3 2.8E-11 6E-16 111.2 13.4 85 314-429 11-100 (146)
198 PLN03200 cellulose synthase-in 99.3 8.5E-12 1.8E-16 152.2 8.6 113 499-619 1979-2100(2102)
199 cd00275 C2_PLC_like C2 domain 99.3 9.7E-11 2.1E-15 105.8 13.4 92 315-429 3-100 (128)
200 PLN03008 Phospholipase D delta 99.2 1.3E-11 2.7E-16 138.6 8.5 108 500-615 14-164 (868)
201 PLN03008 Phospholipase D delta 99.2 7.3E-11 1.6E-15 132.6 14.4 82 334-443 75-157 (868)
202 PF00168 C2: C2 domain; Inter 99.2 8.6E-11 1.9E-15 97.5 10.1 84 316-422 1-85 (85)
203 KOG1326|consensus 99.2 2.7E-11 5.9E-16 135.3 6.3 256 314-596 613-967 (1105)
204 cd08374 C2F_Ferlin C2 domain s 99.1 2.9E-10 6.2E-15 102.7 9.9 113 316-429 2-122 (133)
205 KOG1327|consensus 99.1 8E-10 1.7E-14 118.6 14.9 188 350-596 42-234 (529)
206 smart00239 C2 Protein kinase C 99.1 6.6E-10 1.4E-14 94.6 10.6 93 502-598 2-94 (101)
207 PLN03200 cellulose synthase-in 99.1 4.3E-10 9.3E-15 137.6 10.9 90 313-429 1979-2069(2102)
208 KOG1011|consensus 99.1 1.5E-10 3.3E-15 123.3 5.8 106 499-613 294-410 (1283)
209 cd00030 C2 C2 domain. The C2 d 99.0 1.6E-09 3.5E-14 91.7 9.9 90 502-597 1-90 (102)
210 KOG1328|consensus 99.0 2E-10 4.4E-15 124.0 3.6 114 485-598 932-1049(1103)
211 KOG1328|consensus 99.0 3.6E-10 7.7E-15 122.2 4.3 111 298-429 931-1048(1103)
212 PLN02223 phosphoinositide phos 99.0 2.8E-09 6E-14 115.6 11.0 112 500-615 409-525 (537)
213 PLN02952 phosphoinositide phos 98.9 4.6E-09 1E-13 116.2 11.2 113 499-615 469-587 (599)
214 smart00239 C2 Protein kinase C 98.9 1.3E-08 2.7E-13 86.6 11.2 91 316-429 2-93 (101)
215 KOG0905|consensus 98.9 1.2E-09 2.5E-14 123.6 5.3 127 482-610 1508-1636(1639)
216 KOG0905|consensus 98.8 6.9E-09 1.5E-13 117.5 8.4 109 299-429 1511-1622(1639)
217 cd00030 C2 C2 domain. The C2 d 98.8 2.9E-08 6.2E-13 84.0 10.3 89 316-429 1-90 (102)
218 KOG1011|consensus 98.8 4.7E-09 1E-13 112.2 6.5 103 312-429 293-395 (1283)
219 PLN02230 phosphoinositide phos 98.8 3E-08 6.5E-13 109.7 10.3 113 499-615 468-586 (598)
220 PLN02222 phosphoinositide phos 98.7 4.5E-08 9.7E-13 108.2 10.8 113 499-615 451-569 (581)
221 KOG1031|consensus 98.7 2.6E-08 5.6E-13 105.4 7.9 109 499-612 2-123 (1169)
222 PLN02223 phosphoinositide phos 98.7 2.1E-07 4.5E-12 101.2 12.9 94 313-429 408-509 (537)
223 PLN02228 Phosphoinositide phos 98.7 1.1E-07 2.4E-12 104.8 10.9 113 499-615 430-549 (567)
224 KOG0169|consensus 98.6 5.4E-08 1.2E-12 107.7 7.8 109 501-613 617-730 (746)
225 PLN02952 phosphoinositide phos 98.6 3.4E-07 7.4E-12 101.6 12.6 94 313-429 469-571 (599)
226 PLN02270 phospholipase D alpha 98.5 1.8E-07 3.9E-12 105.7 8.9 110 500-617 8-137 (808)
227 KOG1264|consensus 98.5 3.2E-07 6.9E-12 100.9 9.1 92 500-594 1065-1158(1267)
228 PLN02230 phosphoinositide phos 98.5 9.7E-07 2.1E-11 97.9 12.0 94 313-429 468-570 (598)
229 cd08684 C2A_Tac2-N C2 domain f 98.5 1.8E-07 3.9E-12 76.1 4.3 100 504-607 3-103 (103)
230 PLN02222 phosphoinositide phos 98.5 1.7E-06 3.7E-11 95.8 13.4 95 313-429 451-553 (581)
231 KOG1031|consensus 98.4 3.8E-07 8.2E-12 96.8 6.5 94 314-429 3-97 (1169)
232 PLN02228 Phosphoinositide phos 98.4 3E-06 6.4E-11 93.7 13.7 95 313-429 430-533 (567)
233 KOG2060|consensus 98.4 3.3E-07 7.2E-12 93.6 5.4 122 484-610 255-380 (405)
234 PLN02270 phospholipase D alpha 98.4 4.3E-06 9.3E-11 94.8 14.5 91 313-429 7-116 (808)
235 KOG0169|consensus 98.4 2E-06 4.3E-11 95.6 10.9 94 314-429 616-716 (746)
236 cd08689 C2_fungal_Pkc1p C2 dom 98.3 2.6E-06 5.7E-11 72.6 7.6 83 502-596 1-86 (109)
237 cd08684 C2A_Tac2-N C2 domain f 98.3 1.4E-06 3E-11 71.1 5.6 91 317-429 2-93 (103)
238 cd08689 C2_fungal_Pkc1p C2 dom 98.3 2.8E-06 6.1E-11 72.5 7.1 84 316-429 1-87 (109)
239 KOG1264|consensus 98.1 9.6E-06 2.1E-10 89.6 9.6 92 314-429 1065-1161(1267)
240 cd08683 C2_C2cd3 C2 domain fou 97.8 1.1E-05 2.5E-10 70.8 3.0 105 502-607 1-143 (143)
241 KOG2060|consensus 97.8 3.8E-05 8.2E-10 78.8 5.7 96 312-429 267-365 (405)
242 PF12416 DUF3668: Cep120 prote 97.7 0.0027 5.8E-08 66.5 18.5 251 316-597 2-294 (340)
243 PLN02352 phospholipase D epsil 97.6 0.00014 3E-09 82.7 7.3 104 500-617 10-120 (758)
244 PLN02964 phosphatidylserine de 97.3 0.00038 8.2E-09 78.5 6.4 98 496-606 50-147 (644)
245 PLN02352 phospholipase D epsil 97.3 0.0023 4.9E-08 73.0 12.4 85 313-429 9-98 (758)
246 PLN02964 phosphatidylserine de 97.0 0.00093 2E-08 75.4 5.8 88 310-429 50-138 (644)
247 cd08398 C2_PI3K_class_I_alpha 96.9 0.0069 1.5E-07 56.7 10.1 94 500-597 8-107 (158)
248 KOG1003|consensus 96.9 0.00015 3.3E-09 67.9 -1.0 84 49-133 10-121 (205)
249 cd08693 C2_PI3K_class_I_beta_d 96.7 0.0082 1.8E-07 57.1 9.3 96 500-597 8-121 (173)
250 cd08380 C2_PI3K_like C2 domain 96.7 0.0094 2E-07 55.8 9.4 97 501-598 9-109 (156)
251 cd08683 C2_C2cd3 C2 domain fou 96.4 0.0023 5E-08 56.6 2.7 104 316-429 1-131 (143)
252 cd08397 C2_PI3K_class_III C2 d 96.4 0.015 3.1E-07 54.6 8.2 79 519-597 28-108 (159)
253 cd04012 C2A_PI3K_class_II C2 d 96.4 0.014 2.9E-07 55.6 8.0 98 500-597 8-120 (171)
254 cd08399 C2_PI3K_class_I_gamma 96.3 0.028 6E-07 53.6 9.6 96 501-597 11-123 (178)
255 PF00792 PI3K_C2: Phosphoinosi 95.4 0.062 1.3E-06 49.4 7.7 77 522-598 3-87 (142)
256 KOG1265|consensus 94.8 0.039 8.5E-07 62.7 5.2 85 500-594 703-792 (1189)
257 cd08693 C2_PI3K_class_I_beta_d 94.6 0.21 4.5E-06 47.6 9.2 108 314-428 8-120 (173)
258 cd08380 C2_PI3K_like C2 domain 94.6 0.2 4.3E-06 46.8 8.9 93 314-428 8-107 (156)
259 PF12416 DUF3668: Cep120 prote 94.5 0.1 2.3E-06 54.7 7.5 101 502-610 2-114 (340)
260 PF00261 Tropomyosin: Tropomyo 94.5 0.0046 9.9E-08 62.1 -2.6 88 47-135 40-155 (237)
261 cd08398 C2_PI3K_class_I_alpha 94.4 0.3 6.6E-06 45.7 9.5 90 314-428 8-106 (158)
262 KOG3837|consensus 94.2 0.058 1.3E-06 56.5 4.8 101 169-272 365-476 (523)
263 smart00142 PI3K_C2 Phosphoinos 94.1 0.36 7.7E-06 41.5 8.8 78 502-579 13-92 (100)
264 cd08397 C2_PI3K_class_III C2 d 94.1 0.18 3.8E-06 47.3 7.3 75 334-428 28-107 (159)
265 KOG3837|consensus 92.9 0.027 5.8E-07 58.9 -0.3 111 500-610 367-488 (523)
266 PF15627 CEP76-C2: CEP76 C2 do 92.4 1.4 3.1E-05 40.9 10.4 110 311-429 6-116 (156)
267 KOG1265|consensus 92.2 0.45 9.7E-06 54.5 7.9 86 314-429 703-795 (1189)
268 PF15627 CEP76-C2: CEP76 C2 do 91.4 1.8 4E-05 40.2 9.9 104 496-613 5-121 (156)
269 cd04012 C2A_PI3K_class_II C2 d 91.4 0.92 2E-05 43.1 8.2 104 313-428 7-119 (171)
270 cd08399 C2_PI3K_class_I_gamma 90.9 3 6.5E-05 39.8 11.1 73 314-389 10-86 (178)
271 PF00792 PI3K_C2: Phosphoinosi 90.1 3.2 6.9E-05 38.0 10.4 73 337-429 3-86 (142)
272 cd08694 C2_Dock-A C2 domains f 89.0 14 0.0003 35.7 14.0 61 350-426 54-114 (196)
273 PF10358 NT-C2: N-terminal C2 87.9 6.7 0.00015 35.6 10.9 90 500-595 7-103 (143)
274 cd08695 C2_Dock-B C2 domains f 87.7 1.3 2.9E-05 42.5 6.2 58 537-594 53-112 (189)
275 PF11471 Sugarporin_N: Maltopo 87.2 1.1 2.4E-05 34.6 4.3 31 97-127 29-59 (60)
276 cd08694 C2_Dock-A C2 domains f 86.9 3.9 8.3E-05 39.5 8.8 59 536-594 52-114 (196)
277 cd08695 C2_Dock-B C2 domains f 86.2 8.5 0.00019 37.0 10.7 39 350-389 54-92 (189)
278 PF14429 DOCK-C2: C2 domain in 86.0 2.5 5.4E-05 40.6 7.2 58 538-595 60-120 (184)
279 PF14991 MLANA: Protein melan- 85.1 0.26 5.7E-06 42.4 -0.1 25 20-44 27-51 (118)
280 KOG1452|consensus 85.0 2.3 4.9E-05 43.4 6.4 78 307-391 44-123 (442)
281 PF15625 CC2D2AN-C2: CC2D2A N- 84.4 6.6 0.00014 37.1 9.1 69 522-596 38-106 (168)
282 PF12718 Tropomyosin_1: Tropom 82.2 0.25 5.3E-06 45.5 -1.5 89 48-137 40-131 (143)
283 KOG1452|consensus 81.1 2.6 5.7E-05 43.0 5.1 110 496-615 47-160 (442)
284 smart00142 PI3K_C2 Phosphoinos 80.8 9.8 0.00021 32.5 8.0 71 316-388 13-88 (100)
285 PTZ00382 Variant-specific surf 80.6 0.87 1.9E-05 38.8 1.4 31 14-44 63-95 (96)
286 PF10358 NT-C2: N-terminal C2 79.0 49 0.0011 29.8 12.9 95 315-430 8-106 (143)
287 PF05454 DAG1: Dystroglycan (D 75.5 0.9 2E-05 46.6 0.0 25 19-45 150-174 (290)
288 PF14429 DOCK-C2: C2 domain in 74.8 8.8 0.00019 36.8 6.7 61 350-427 60-120 (184)
289 PF04478 Mid2: Mid2 like cell 73.0 2.6 5.6E-05 38.7 2.3 19 27-45 61-79 (154)
290 cd08679 C2_DOCK180_related C2 71.6 12 0.00027 35.6 6.8 57 538-595 54-115 (178)
291 PF10779 XhlA: Haemolysin XhlA 69.7 9 0.0002 30.6 4.5 57 93-149 6-62 (71)
292 cd08696 C2_Dock-C C2 domains f 68.3 17 0.00037 34.7 6.8 58 537-594 54-117 (179)
293 cd08697 C2_Dock-D C2 domains f 64.8 33 0.00071 33.0 8.0 58 537-594 56-122 (185)
294 PF12329 TMF_DNA_bd: TATA elem 60.5 19 0.00042 29.0 4.8 48 89-136 22-69 (74)
295 KOG0906|consensus 58.1 27 0.00059 39.5 6.8 92 519-610 45-144 (843)
296 PF08826 DMPK_coil: DMPK coile 56.6 42 0.0009 26.0 5.8 35 99-133 24-58 (61)
297 PF12718 Tropomyosin_1: Tropom 56.0 13 0.00028 34.2 3.5 41 96-136 52-95 (143)
298 cd08696 C2_Dock-C C2 domains f 55.3 50 0.0011 31.6 7.5 41 350-391 55-95 (179)
299 PF07162 B9-C2: Ciliary basal 54.8 1E+02 0.0022 29.0 9.6 86 503-594 5-102 (168)
300 PF12777 MT: Microtubule-bindi 53.7 0.13 2.8E-06 54.7 -11.6 111 35-152 199-322 (344)
301 cd08679 C2_DOCK180_related C2 52.5 38 0.00081 32.2 6.3 62 350-427 54-115 (178)
302 PRK11637 AmiB activator; Provi 51.0 4.1 8.9E-05 44.7 -0.7 46 92-137 74-119 (428)
303 KOG4403|consensus 50.5 9 0.00019 40.8 1.7 47 101-147 310-387 (575)
304 PF06365 CD34_antigen: CD34/Po 49.2 7.2 0.00016 37.8 0.7 29 16-45 99-130 (202)
305 KOG0904|consensus 45.2 89 0.0019 36.8 8.5 95 500-595 343-455 (1076)
306 cd08697 C2_Dock-D C2 domains f 44.7 81 0.0018 30.3 7.1 40 350-390 57-96 (185)
307 PF15625 CC2D2AN-C2: CC2D2A N- 43.8 1.2E+02 0.0026 28.6 8.1 68 336-429 37-107 (168)
308 cd08687 C2_PKN-like C2 domain 43.0 1.1E+02 0.0024 25.8 6.6 50 521-579 9-58 (98)
309 PF10409 PTEN_C2: C2 domain of 42.5 2.2E+02 0.0049 25.2 9.5 89 500-593 4-94 (134)
310 PF11618 DUF3250: Protein of u 41.7 47 0.001 28.9 4.6 54 539-594 13-71 (107)
311 PF01102 Glycophorin_A: Glycop 40.2 4.2 9.1E-05 36.2 -2.2 38 9-46 56-95 (122)
312 PF10873 DUF2668: Protein of u 37.9 10 0.00022 34.4 -0.2 28 14-41 58-86 (155)
313 PRK04778 septation ring format 35.8 17 0.00037 41.4 1.2 26 20-45 3-28 (569)
314 PRK00846 hypothetical protein; 35.2 1.2E+02 0.0025 24.8 5.5 47 91-137 4-50 (77)
315 PF04156 IncA: IncA protein; 35.2 4.1 8.9E-05 39.2 -3.4 9 18-26 39-47 (191)
316 cd08687 C2_PKN-like C2 domain 34.5 95 0.0021 26.3 5.0 45 336-388 9-54 (98)
317 PF04102 SlyX: SlyX; InterPro 34.1 1.2E+02 0.0027 23.9 5.5 39 98-136 2-40 (69)
318 KOG4027|consensus 33.3 3.4E+02 0.0074 25.3 8.7 75 520-594 25-109 (187)
319 PF11618 DUF3250: Protein of u 33.0 2.1E+02 0.0046 24.8 7.3 59 349-429 11-74 (107)
320 PF13908 Shisa: Wnt and FGF in 30.6 39 0.00083 32.2 2.5 27 18-44 80-107 (179)
321 PF03285 Paralemmin: Paralemmi 30.3 57 0.0012 33.4 3.7 34 107-140 3-36 (278)
322 PF12273 RCR: Chitin synthesis 30.0 11 0.00025 33.8 -1.2 11 35-45 18-28 (130)
323 KOG2189|consensus 29.6 64 0.0014 37.4 4.3 79 43-136 56-135 (829)
324 PF12999 PRKCSH-like: Glucosid 28.8 1.2E+02 0.0027 28.8 5.5 46 90-135 129-174 (176)
325 TIGR03867 MprA_tail MprA prote 28.5 19 0.00041 22.9 -0.0 21 21-44 7-27 (27)
326 PHA02954 EEV membrane glycopro 28.4 46 0.001 34.9 2.8 52 112-163 253-305 (317)
327 PF12877 DUF3827: Domain of un 28.1 23 0.00049 40.1 0.5 42 4-45 247-299 (684)
328 PF08826 DMPK_coil: DMPK coile 28.0 1.8E+02 0.0039 22.6 5.2 41 96-136 14-54 (61)
329 PF05083 LST1: LST-1 protein; 27.7 7.7 0.00017 30.5 -2.2 17 26-42 3-19 (74)
330 PTZ00459 mucin-associated surf 27.7 19 0.00042 37.2 -0.1 19 25-43 7-25 (291)
331 PF02346 Vac_Fusion: Chordopox 27.5 2.1E+02 0.0045 21.9 5.4 39 95-133 3-41 (57)
332 COG5510 Predicted small secret 26.9 20 0.00044 25.5 -0.1 17 23-39 7-23 (44)
333 KOG2397|consensus 26.6 1.1E+02 0.0023 33.6 5.2 62 108-181 338-399 (480)
334 COG2959 HemX Uncharacterized e 26.4 32 0.0007 36.3 1.2 93 19-134 32-124 (391)
335 PF05624 LSR: Lipolysis stimul 25.7 23 0.00049 25.5 -0.0 22 18-39 4-25 (49)
336 PF01034 Syndecan: Syndecan do 25.4 24 0.00052 27.5 0.1 18 33-50 26-44 (64)
337 PF14575 EphA2_TM: Ephrin type 25.3 13 0.00028 30.1 -1.5 25 20-44 3-27 (75)
338 PF14186 Aida_C2: Cytoskeletal 25.0 2.2E+02 0.0048 26.3 6.2 96 496-594 9-110 (147)
339 PF02038 ATP1G1_PLM_MAT8: ATP1 24.8 22 0.00047 26.3 -0.2 20 19-38 16-35 (50)
340 KOG1962|consensus 24.6 87 0.0019 30.8 3.7 45 92-136 157-201 (216)
341 KOG1962|consensus 24.0 1.2E+02 0.0025 29.9 4.4 47 91-137 149-195 (216)
342 PF15290 Syntaphilin: Golgi-lo 23.8 1.4E+02 0.0031 30.3 5.1 35 99-133 67-101 (305)
343 PRK04406 hypothetical protein; 23.5 1.7E+02 0.0038 23.6 4.7 39 98-136 9-47 (75)
344 PRK04406 hypothetical protein; 23.4 2.4E+02 0.0052 22.8 5.5 35 100-134 4-38 (75)
345 PRK04325 hypothetical protein; 23.4 2.3E+02 0.005 22.8 5.4 39 98-136 7-45 (74)
346 PRK00736 hypothetical protein; 23.0 2E+02 0.0043 22.8 4.8 38 99-136 4-41 (68)
347 PF06428 Sec2p: GDP/GTP exchan 22.7 2.1E+02 0.0045 24.6 5.3 48 89-136 11-59 (100)
348 PRK00295 hypothetical protein; 22.4 2.1E+02 0.0045 22.6 4.9 38 99-136 4-41 (68)
349 PF02994 Transposase_22: L1 tr 22.2 1.7E+02 0.0036 31.5 5.7 45 93-137 144-188 (370)
350 KOG2419|consensus 21.3 37 0.0008 38.3 0.5 54 198-257 308-361 (975)
351 PF05529 Bap31: B-cell recepto 21.2 1.7E+02 0.0037 28.1 5.1 38 93-130 154-191 (192)
352 PRK02119 hypothetical protein; 20.3 3E+02 0.0066 22.1 5.5 37 99-135 8-44 (73)
No 1
>KOG1028|consensus
Probab=100.00 E-value=5.3e-41 Score=359.89 Aligned_cols=269 Identities=49% Similarity=0.825 Sum_probs=239.3
Q ss_pred CCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCc
Q psy1415 297 EGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITP 375 (622)
Q Consensus 297 ~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~ 375 (622)
....|+|.+++.|......|.|+|++|++|+.+| ..|.+||||+++++|+.+ +.+|++.++++||+|||+|.|. +..
T Consensus 150 ~~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d-~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~-v~~ 227 (421)
T KOG1028|consen 150 VKAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKD-RGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFE-VPY 227 (421)
T ss_pred ceeeeeEEEEEEecccCCEEEEEEEEecCCCccc-CCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEee-cCH
Confidence 4567999999999999999999999999999999 788999999999999885 9999999999999999999998 888
Q ss_pred ccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccCCceeeEEEEeeccCCCCccceeEE
Q psy1415 376 HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVF 455 (622)
Q Consensus 376 ~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~l~~~~~~~~~g~~~ 455 (622)
+++....|.+.|| |+|++++|++||++.++|..+..... ...|
T Consensus 228 ~~l~~~~L~l~V~-------------------~~drfsr~~~iGev~~~l~~~~~~~~------------------~~~w 270 (421)
T KOG1028|consen 228 EELSNRVLHLSVY-------------------DFDRFSRHDFIGEVILPLGEVDLLST------------------TLFW 270 (421)
T ss_pred HHhccCEEEEEEE-------------------ecCCcccccEEEEEEecCcccccccc------------------ceee
Confidence 8898888888888 99999999999999999888861111 2233
Q ss_pred EeeecccccCcccccccccCccccccccCCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeE
Q psy1415 456 YSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQR 535 (622)
Q Consensus 456 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~ 535 (622)
..+..... . .....|+|.++++|.|..|.|+|.|++|++|..++..+.+||||++.+..++++
T Consensus 271 ~~l~~~~~----------------~-~~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~ 333 (421)
T KOG1028|consen 271 KDLQPSST----------------D-SEELAGELLLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKR 333 (421)
T ss_pred eccccccC----------------C-cccccceEEEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCce
Confidence 33332111 1 112228999999999999999999999999999999999999999999988888
Q ss_pred eeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCce
Q psy1415 536 VAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQI 615 (622)
Q Consensus 536 ~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i 615 (622)
..+++|.+.++++||+|||+|.|.|+...+++.+|.|+|||++.++++++||++.++.. ..+.+..||.+++++|++++
T Consensus 334 ~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~-~~~~~~~hW~~m~~~p~~pv 412 (421)
T KOG1028|consen 334 LSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSD-STGEEVRHWQEMLNSPRKPV 412 (421)
T ss_pred eeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCC-CCchHHHHHHHHHhCccCce
Confidence 88999999999999999999999999988999899999999999999999999999974 46788999999999999999
Q ss_pred eeEEecC
Q psy1415 616 AEWLTYR 622 (622)
Q Consensus 616 ~~w~~l~ 622 (622)
++||.||
T Consensus 413 ~~wh~l~ 419 (421)
T KOG1028|consen 413 AQWHSLR 419 (421)
T ss_pred eeeEecc
Confidence 9999997
No 2
>KOG1028|consensus
Probab=100.00 E-value=1.7e-33 Score=301.97 Aligned_cols=250 Identities=23% Similarity=0.274 Sum_probs=211.8
Q ss_pred hhhhhcccccceeehhhhhhheeeeeeEEEEEeecCCCccccccccceeccccCCcccCCCCCCCCCccceeeecCCCCC
Q psy1415 129 EVDRLEVSGHTVLGLGLAGLVFAATVCLATCYCRRRTSPLEAKKLALSQMTLKRPTAVRSPAAAGPNSHYLKKSPSPTYA 208 (622)
Q Consensus 129 ~~~~le~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~dp~~~~vk~~~~p~~~ 208 (622)
.++.-+.++-..+|.+-+++.|+. +...|.++|+.+.++++.+..+.+|| |||+.++|+++
T Consensus 141 ~~~~~~~~~~~~~G~l~fsl~Yd~----------------~~~~L~V~V~qa~~Lp~~d~~g~sdp---yVK~~llPdk~ 201 (421)
T KOG1028|consen 141 SLDSNELENVKAVGNLQFSLQYDF----------------ELNLLTVRVIQAHDLPAKDRGGTSDP---YVKVYLLPDKK 201 (421)
T ss_pred ccccCCCccceeeeeEEEEEEecc----------------cCCEEEEEEEEecCCCcccCCCCCCC---eeEEEEcCCCC
Confidence 333344445678999999999988 66667777777777777776677899 99999999999
Q ss_pred CCccccccCCCCCCCCCCCCCCCCCCCCCcccCCCeEEEEeccccCCCcceeeeccCCCCCCCCCCCCCCCccccccccc
Q psy1415 209 TPVASLVNSPTGSTNSNNGAGSNSHSPIQPCVALPGTVVITENEKAAPLVLGVAGPTTAGNGPAANGTDSDDSCALVNKE 288 (622)
Q Consensus 209 ~~~kT~v~~~t~nP~~~E~~~f~~~~~~~~~~~~L~~~V~d~d~~~~dd~lG~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 288 (622)
++.||+|.++|+||.|||+|.|. +.+.++..+.|.|.|||+|+++++++||++.++|..+..... ...|....
T Consensus 202 ~k~kT~v~r~tlnP~fnEtf~f~-v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~------~~~w~~l~ 274 (421)
T KOG1028|consen 202 GKFKTRVHRKTLNPVFNETFRFE-VPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLST------TLFWKDLQ 274 (421)
T ss_pred CcceeeeeecCcCCccccceEee-cCHHHhccCEEEEEEEecCCcccccEEEEEEecCcccccccc------ceeeeccc
Confidence 99999999999999999999999 888889999999999999999999999999999888765542 23465544
Q ss_pred cccCCCCCCCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeee
Q psy1415 289 TVDCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYN 365 (622)
Q Consensus 289 ~~~~~~~~~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~ 365 (622)
......... .|+|.+++.|.|..++|.|.|++|+||..++ .++.+||||+++++.+++ ++||.+.++++||+||
T Consensus 275 ~~~~~~~~~--~gel~~sL~Y~p~~g~ltv~v~kar~L~~~~-~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~n 351 (421)
T KOG1028|consen 275 PSSTDSEEL--AGELLLSLCYLPTAGRLTVVVIKARNLKSMD-VGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFN 351 (421)
T ss_pred cccCCcccc--cceEEEEEEeecCCCeEEEEEEEecCCCccc-CCCCCCccEEEEEecCCceeeeeeeecccCCCCCccc
Confidence 332222222 2899999999999999999999999999999 799999999999987765 8999999999999999
Q ss_pred ceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCc
Q psy1415 366 EEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS 427 (622)
Q Consensus 366 e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~ 427 (622)
|+|.|. ++++++++..+.|.|| |++.++++++||.+.+....
T Consensus 352 esf~F~-vp~~~l~~~~l~l~V~-------------------d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 352 ETFVFD-VPPEQLAEVSLELTVW-------------------DHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred ccEEEe-CCHHHhheeEEEEEEE-------------------EcccccccceeeEEEecCCC
Confidence 999996 9999998877777777 99999999999998887765
No 3
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.95 E-value=2e-26 Score=258.52 Aligned_cols=382 Identities=21% Similarity=0.266 Sum_probs=250.0
Q ss_pred CCCCCCccceeeecCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCcccCCCeEEEEeccccCCCcceeeeccCCCCC
Q psy1415 190 AAAGPNSHYLKKSPSPTYATPVASLVNSPTGSTNSNNGAGSNSHSPIQPCVALPGTVVITENEKAAPLVLGVAGPTTAGN 269 (622)
Q Consensus 190 ~~~dp~~~~vk~~~~p~~~~~~kT~v~~~t~nP~~~E~~~f~~~~~~~~~~~~L~~~V~d~d~~~~dd~lG~~~~~l~~l 269 (622)
++.|| ||.+... +.-..||++.+++.||+|||+|+....+.. ++|.++|||+|+...|+.+|.+.+.|..+
T Consensus 457 ~~vDp---yit~~~~--~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~----d~L~LslyD~n~~~sd~vvG~~~l~L~~L 527 (1227)
T COG5038 457 GTVDP---YITVTFS--DRVIGKTRVKKNTLNPVWNETFYILLNSFT----DPLNLSLYDFNSFKSDKVVGSTQLDLALL 527 (1227)
T ss_pred CCCCc---eEEEEec--cccCCccceeeccCCccccceEEEEecccC----CceeEEEEeccccCCcceeeeEEechHHh
Confidence 56788 9999963 555559999999999999999999877766 89999999999999999999999877766
Q ss_pred CCCCCCCCCCccc--------------cccccccccCC---CC---CCCcceEEEEEEE---------------------
Q psy1415 270 GPAANGTDSDDSC--------------ALVNKETVDCD---GN---AEGKLGQIFFKIK--------------------- 308 (622)
Q Consensus 270 ~~~~~~~~~~~~~--------------~~~~~~~~~~~---~~---~~~~~G~i~~~l~--------------------- 308 (622)
...+....+.... .|+..-..... .. .....|-+.+.+.
T Consensus 528 ~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~~e~k~~~~~s~e~~ed~n~GI~k~tl~~~~~l~~~~~~~~~~~a~l~~ 607 (1227)
T COG5038 528 HQNPVKKNELYEFLRNTKNVGRLTYDLRFFPVIEDKKELKGSVEPLEDSNTGILKVTLREVKALDELSSKKDNKSAELYT 607 (1227)
T ss_pred hhccccccceeeeeccCccceEEEEeeeeecccCCccccccccCCcccCCcceeEEEeeccccccCccccccceeEEEEe
Confidence 5443221110000 00000000000 00 0111122322222
Q ss_pred --------------------------------------------------------------------------------
Q psy1415 309 -------------------------------------------------------------------------------- 308 (622)
Q Consensus 309 -------------------------------------------------------------------------------- 308 (622)
T Consensus 608 ~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~~g~~i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~ 687 (1227)
T COG5038 608 NAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQSGKVIATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFI 687 (1227)
T ss_pred cceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccccCceeccccccchHhhhccccceEEEEcCCCcceEEE
Confidence
Q ss_pred ---EEC---------------CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeE
Q psy1415 309 ---YQE---------------KENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFT 369 (622)
Q Consensus 309 ---~~~---------------~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~ 369 (622)
|.| ..|.+++.|..|.+|.... .++++|||+++.+ ++. ++||-....++||.|++...
T Consensus 688 t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i-~g~~~dPya~v~~--n~~~k~rti~~~~~~npiw~~i~Y 764 (1227)
T COG5038 688 TNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEI-PGGKSDPYATVLV--NNLVKYRTIYGSSTLNPIWNEILY 764 (1227)
T ss_pred EeccceeeccccccceeeecCccceEEEEeehhhcccccc-cCcccccceEEEe--cceeEEEEecccCccccceeeeEE
Confidence 111 1377899999999999777 7899999999999 554 89999999999999999876
Q ss_pred EcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccCCceeeEEEEee-----c-
Q psy1415 370 FTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSF-----D- 443 (622)
Q Consensus 370 f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~l-----~- 443 (622)
..+..+.+ .+.+.+ .|++..+.|..+|++.++++++...+.........- .
T Consensus 765 v~v~sk~~----r~~l~~-------------------~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~ 821 (1227)
T COG5038 765 VPVTSKNQ----RLTLEC-------------------MDYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGK 821 (1227)
T ss_pred EEecCCcc----EEeeee-------------------ecchhccccceeceeeeeeeeeeecCCCcceEEeecCcccccc
Confidence 65444332 344444 488889999999999999998876322111100000 0
Q ss_pred -cCCCCccceeEEEeeecccc----------------------------cCc----------------------------
Q psy1415 444 -RYSRDDIVGEVFYSLQSFET----------------------------YGH---------------------------- 466 (622)
Q Consensus 444 -~~~~~~~~g~~~~~l~~~~~----------------------------~~~---------------------------- 466 (622)
..+...+.|.+-|....+.. .++
T Consensus 822 l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k 901 (1227)
T COG5038 822 LSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLK 901 (1227)
T ss_pred cccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceeeccccchhhcc
Confidence 00001111111111100000 000
Q ss_pred -------cc-----------------------ccc-cc--------------------------------------cCc-
Q psy1415 467 -------SL-----------------------SFC-RD--------------------------------------IQP- 476 (622)
Q Consensus 467 -------~~-----------------------~~~-~~--------------------------------------~~~- 476 (622)
.+ ..- .+ ...
T Consensus 902 ~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a 981 (1227)
T COG5038 902 PKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNA 981 (1227)
T ss_pred hhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccceEEEEeccCC
Confidence 00 000 00 000
Q ss_pred --cc---------------------cccccCCCCceeeeccccCC------------ccEEEEEEEeecCCCCCCCCCCC
Q psy1415 477 --RN---------------------LRIKSQGRGEILLSLCWQPA------------ANRFTIVVLKARNLPKMDVTGLA 521 (622)
Q Consensus 477 --~~---------------------~~~~~~~~G~l~i~l~~~~~------------~g~L~V~I~~A~~L~~~d~~g~s 521 (622)
.+ ....-.+...+.+++.|.|. .|.|.|.+..|.||+..|.+|.+
T Consensus 982 ~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~d~ng~s 1061 (1227)
T COG5038 982 KKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSDENGYS 1061 (1227)
T ss_pred cccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCCCcccccCCCC
Confidence 00 00000111345555666654 48999999999999999999999
Q ss_pred CcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCCCccc
Q psy1415 522 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTAL 601 (622)
Q Consensus 522 DPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~ 601 (622)
||||++.+ ++.. .++|.++++|+||.|||.|..+|.+...+ .++|.|+|||...+++.||.+.|+|..+.....
T Consensus 1062 Dpfv~~~l--n~k~--vyktkv~KktlNPvwNEe~~i~v~~r~~D--~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~ 1135 (1227)
T COG5038 1062 DPFVKLFL--NEKS--VYKTKVVKKTLNPVWNEEFTIEVLNRVKD--VLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGT 1135 (1227)
T ss_pred CceEEEEe--ccee--cccccchhccCCCCccccceEeeeccccc--eEEEEEeecccCCCccccccccccHhhcCcCCc
Confidence 99999999 5543 78999999999999999999999876544 499999999999999999999999987766666
Q ss_pred chhhhhhcCCC
Q psy1415 602 THWTDVCNSPR 612 (622)
Q Consensus 602 ~~W~~L~~~p~ 612 (622)
..|.=.+..+.
T Consensus 1136 ~n~~i~ldgk~ 1146 (1227)
T COG5038 1136 TNSNIPLDGKT 1146 (1227)
T ss_pred cceeeeccCcc
Confidence 66666655544
No 4
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.95 E-value=7.4e-28 Score=216.49 Aligned_cols=133 Identities=25% Similarity=0.481 Sum_probs=123.0
Q ss_pred ceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCC-CCeeecEEEEEecCCCCC
Q psy1415 488 EILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTL-NPVYNESFVFEVPADNLD 566 (622)
Q Consensus 488 ~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tl-nP~wne~f~f~v~~~~l~ 566 (622)
+|+++++|+|..++|+|.|++|+||++++..+.+||||++++.+.++...++||+++++|+ ||.|||.|.|+|+.+. .
T Consensus 2 el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~-~ 80 (135)
T cd08692 2 ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQE-H 80 (135)
T ss_pred eEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchh-h
Confidence 7899999999999999999999999998777888999999999888888899999999995 6999999999999764 4
Q ss_pred ccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEec
Q psy1415 567 SVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTY 621 (622)
Q Consensus 567 ~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l 621 (622)
+.+|.|+|||++..+++++||++.++.+...+.+..||.+++.+|+++|++||.|
T Consensus 81 ~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~~pr~~ia~WH~L 135 (135)
T cd08692 81 GIQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIANPEKVVTKWHSL 135 (135)
T ss_pred eeEEEEEEEeCCCCcCCceEEEEEECCccCCchhhhhHHHHHhCCCCeeeEeecC
Confidence 6889999999999999999999999987666778999999999999999999987
No 5
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.95 E-value=4.3e-28 Score=221.15 Aligned_cols=136 Identities=40% Similarity=0.627 Sum_probs=126.4
Q ss_pred CCceeeeccccCCccEEEEEEEeecCCCCCCC--CCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCC
Q psy1415 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDV--TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD 563 (622)
Q Consensus 486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~--~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~ 563 (622)
.|+|+++++|.|..+.|.|.|++|+||++++. .+.+||||++++.+++++..++||+++++++||+|||.|.|.|+..
T Consensus 1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~ 80 (138)
T cd08407 1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSE 80 (138)
T ss_pred CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHH
Confidence 38999999999999999999999999999983 3558999999999877777789999999999999999999999988
Q ss_pred CCCccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEecC
Q psy1415 564 NLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTYR 622 (622)
Q Consensus 564 ~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l~ 622 (622)
++.+.+|.|+|||++.++++++||++.|++. ..+.+..||.+++.+|++.|++||.|.
T Consensus 81 ~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~-~~g~~~~hW~~ml~~p~~~va~WH~L~ 138 (138)
T cd08407 81 LLAASSVELEVLNQDSPGQSLPLGRCSLGLH-TSGTERQHWEEMLDNPRRQIAMWHQLH 138 (138)
T ss_pred HhCccEEEEEEEeCCCCcCcceeceEEecCc-CCCcHHHHHHHHHhCCCCchhEEEECC
Confidence 8888899999999999999999999999985 578899999999999999999999984
No 6
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.95 E-value=7.8e-28 Score=219.57 Aligned_cols=136 Identities=43% Similarity=0.701 Sum_probs=127.7
Q ss_pred CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC
Q psy1415 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 565 (622)
Q Consensus 486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l 565 (622)
.|+|.++++|.|..+.|.|.|++|+||+.++..|.+||||++++.+++....++||+++++++||+|||.|.|.|+..++
T Consensus 1 ~G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l 80 (136)
T cd08406 1 VGEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVL 80 (136)
T ss_pred CcEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHh
Confidence 38999999999999999999999999999999999999999999887776668899999999999999999999988788
Q ss_pred CccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEecC
Q psy1415 566 DSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTYR 622 (622)
Q Consensus 566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l~ 622 (622)
.+.+|.|+|||++.++++++||++.|+.. ..+.+..||++++.+|++.+++||.||
T Consensus 81 ~~~~l~~~V~~~d~~~~~~~iG~v~lg~~-~~g~~~~hW~~ml~~~~~~v~~WH~l~ 136 (136)
T cd08406 81 QDLSLRVTVAESTEDGKTPNVGHVIIGPA-ASGMGLSHWNQMLASLRKPVAMWHPLR 136 (136)
T ss_pred CCcEEEEEEEeCCCCCCCCeeEEEEECCC-CCChhHHHHHHHHHCCCCeeeEeeecC
Confidence 88899999999999999999999999974 678999999999999999999999997
No 7
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.93 E-value=7.5e-26 Score=207.41 Aligned_cols=135 Identities=30% Similarity=0.562 Sum_probs=124.2
Q ss_pred CceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeC-CeEeeEeeeeeccCCCCCeeecEEEEEecCCCC
Q psy1415 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYK-GQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 565 (622)
Q Consensus 487 G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~-~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l 565 (622)
|+|.+++.|.+..+.|.|.|++|+||++++..|.+||||++++.+. +....++||++++++.||+|||.|.|+++..++
T Consensus 2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l 81 (138)
T cd08408 2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL 81 (138)
T ss_pred CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh
Confidence 6899999999999999999999999999999999999999999864 444567899999999999999999999998788
Q ss_pred CccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEec
Q psy1415 566 DSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTY 621 (622)
Q Consensus 566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l 621 (622)
.+.+|.|+|||++.++++++||++.|++......+..||++++.+|+++|++||+|
T Consensus 82 ~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~~~~~v~~WH~l 137 (138)
T cd08408 82 SEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKESKGQQVCRWHTL 137 (138)
T ss_pred CccEEEEEEEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHhCCCCEEeEeeec
Confidence 88899999999999999999999999986555567899999999999999999998
No 8
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.93 E-value=2e-25 Score=204.37 Aligned_cols=135 Identities=34% Similarity=0.637 Sum_probs=123.3
Q ss_pred CceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCC
Q psy1415 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD 566 (622)
Q Consensus 487 G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~ 566 (622)
|+|.+++.|.|..+.|+|.|++|++|+.++..|.+||||++++.++.....+++|+++++++||.|||.|.|.++..+++
T Consensus 1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~ 80 (135)
T cd08410 1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELE 80 (135)
T ss_pred CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhC
Confidence 78999999999999999999999999999999999999999986655555578999999999999999999999877777
Q ss_pred ccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEec
Q psy1415 567 SVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTY 621 (622)
Q Consensus 567 ~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l 621 (622)
+..|.|+|||++..+++++||++.|+.....+....||+.|+..|+++|++||.|
T Consensus 81 ~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~~~~~~wh~l 135 (135)
T cd08410 81 NVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQRTAVEQWHSL 135 (135)
T ss_pred CCEEEEEEEeCCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCCCEeeEeecC
Confidence 7779999999999999999999999976566667899999999999999999987
No 9
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.93 E-value=3.1e-25 Score=203.44 Aligned_cols=135 Identities=38% Similarity=0.650 Sum_probs=124.6
Q ss_pred CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC
Q psy1415 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 565 (622)
Q Consensus 486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l 565 (622)
.|+|.+++.|.+..+.|+|.|++|+||++++ .+.+||||++.+.+++....+++|++++++.||.|||.|.|.|+..++
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l 79 (137)
T cd08409 1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQL 79 (137)
T ss_pred CcEEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHh
Confidence 4899999999999999999999999999999 888999999999887666667899999999999999999999987778
Q ss_pred CccEEEEEEEEcCCCCCCceeEEEEECCC-CCCCcccchhhhhhcCCCCceeeEEec
Q psy1415 566 DSVSLELLLLDWDRVTKNEVIGRLDLGGD-KSSGTALTHWTDVCNSPRRQIAEWLTY 621 (622)
Q Consensus 566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~-~~~~~~~~~W~~L~~~p~~~i~~w~~l 621 (622)
.+..|.|+|||++.++++++||++.|+.. ...+.+..||++++.+|++.|++||+|
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i~~WH~l 136 (137)
T cd08409 80 DTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELIKRWHAL 136 (137)
T ss_pred CccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCceeEEEeC
Confidence 87889999999999999999999999974 355788999999999999999999997
No 10
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.93 E-value=3.5e-25 Score=203.13 Aligned_cols=135 Identities=53% Similarity=0.922 Sum_probs=124.1
Q ss_pred CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC
Q psy1415 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 565 (622)
Q Consensus 486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l 565 (622)
.|+|.+++.|.+..+.|+|.|++|++|+.++..|.+||||++++.+++....+++|+++++++||.|||.|.|.++..++
T Consensus 1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l 80 (136)
T cd08402 1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQI 80 (136)
T ss_pred CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHh
Confidence 48999999999999999999999999999999999999999999776655567889999999999999999999986666
Q ss_pred CccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEec
Q psy1415 566 DSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTY 621 (622)
Q Consensus 566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l 621 (622)
+...|.|+|||++.++++++||++.|++. ..+.+..||++|+..|++.|++||+|
T Consensus 81 ~~~~l~~~v~d~~~~~~~~~iG~~~i~~~-~~~~~~~~W~~~~~~~~~~~~~wh~~ 135 (136)
T cd08402 81 QKVHLIVTVLDYDRIGKNDPIGKVVLGCN-ATGAELRHWSDMLASPRRPIAQWHTL 135 (136)
T ss_pred CCCEEEEEEEeCCCCCCCceeEEEEECCc-cCChHHHHHHHHHhCCCCeeeEEEEc
Confidence 66679999999999999999999999995 56888999999999999999999997
No 11
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.92 E-value=6.1e-25 Score=201.54 Aligned_cols=135 Identities=68% Similarity=1.136 Sum_probs=124.9
Q ss_pred CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC
Q psy1415 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 565 (622)
Q Consensus 486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l 565 (622)
+|+|.++++|.+..+.|.|.|++|+||+.++..|.+||||++++.+++....+++|+++++++||.|||.|.|.++...+
T Consensus 1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~ 80 (136)
T cd08404 1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEEL 80 (136)
T ss_pred CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHh
Confidence 58999999999999999999999999999999999999999999776666668899999999999999999999986666
Q ss_pred CccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEec
Q psy1415 566 DSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTY 621 (622)
Q Consensus 566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l 621 (622)
.+..|.|+|||++.++++++||++.|++.. .+.+..+|+.|...|+++|++||.|
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~-~~~~~~~w~~l~~~~~~~i~~Wh~l 135 (136)
T cd08404 81 EDISVEFLVLDSDRVTKNEVIGRLVLGPKA-SGSGGHHWKEVCNPPRRQIAEWHML 135 (136)
T ss_pred CCCEEEEEEEECCCCCCCccEEEEEECCcC-CCchHHHHHHHHhCCCCeeeEEEec
Confidence 666799999999999999999999999977 7889999999999999999999997
No 12
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.92 E-value=7.9e-25 Score=200.79 Aligned_cols=136 Identities=51% Similarity=0.970 Sum_probs=123.5
Q ss_pred CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC
Q psy1415 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 565 (622)
Q Consensus 486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l 565 (622)
+|+|.++++|.+..+.|.|.|++|+||++++..|.+||||++.+.+++....+++|++++++.||.|||.|.|.++...+
T Consensus 1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~ 80 (136)
T cd08405 1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERL 80 (136)
T ss_pred CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHh
Confidence 58999999999999999999999999999999999999999999765444457799999999999999999999876666
Q ss_pred CccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEecC
Q psy1415 566 DSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTYR 622 (622)
Q Consensus 566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l~ 622 (622)
.+..|.|+|||++.++++++||++.|++... +...++|++|+..|++.|++||.|+
T Consensus 81 ~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~-~~~~~~w~~~~~~~~~~~~~wh~l~ 136 (136)
T cd08405 81 RETTLIITVMDKDRLSRNDLIGKIYLGWKSG-GLELKHWKDMLSKPRQPVAQWHRLK 136 (136)
T ss_pred CCCEEEEEEEECCCCCCCcEeEEEEECCccC-CchHHHHHHHHhCCCCchhEEEecC
Confidence 6667999999999999999999999999654 8889999999999999999999985
No 13
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.92 E-value=1.5e-24 Score=198.45 Aligned_cols=134 Identities=50% Similarity=0.941 Sum_probs=122.9
Q ss_pred CceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCC
Q psy1415 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD 566 (622)
Q Consensus 487 G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~ 566 (622)
|+|.+++.|.+..+.|+|.|++|++|++++..|.+||||++++.+.+....+++|.++++++||.|||.|.|.++...+.
T Consensus 1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~ 80 (134)
T cd08403 1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVD 80 (134)
T ss_pred CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhC
Confidence 78999999999999999999999999999999999999999997766555678999999999999999999998766666
Q ss_pred ccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEec
Q psy1415 567 SVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTY 621 (622)
Q Consensus 567 ~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l 621 (622)
+..|.|+|||++.++++++||++.|++. ..+.+..+|++++..|++.+++||.|
T Consensus 81 ~~~l~~~v~d~~~~~~~~~IG~~~l~~~-~~~~~~~~w~~~~~~~~~~~~~wh~~ 134 (134)
T cd08403 81 NVSLIIAVVDYDRVGHNELIGVCRVGPN-ADGQGREHWNEMLANPRKPIAQWHQL 134 (134)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEECCC-CCCchHHHHHHHHHCCCCeeeEeecC
Confidence 6679999999999999999999999985 66788999999999999999999987
No 14
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.91 E-value=2.3e-24 Score=196.94 Aligned_cols=133 Identities=36% Similarity=0.667 Sum_probs=121.0
Q ss_pred ceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCc
Q psy1415 488 EILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDS 567 (622)
Q Consensus 488 ~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~ 567 (622)
.|++++.|.+..+.|.|.|++|++|++++..|.+||||++++.+++....+++|+++++++||.|||.|.|.+...++..
T Consensus 1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~ 80 (133)
T cd08384 1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK 80 (133)
T ss_pred CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence 37889999999999999999999999999999999999999987655555789999999999999999999998766666
Q ss_pred cEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEec
Q psy1415 568 VSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTY 621 (622)
Q Consensus 568 ~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l 621 (622)
..|.|+|||++..+++++||++.|++. ..+....+||+++..|++++++||.|
T Consensus 81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~-~~~~~~~~W~~~l~~~~~~~~~wh~l 133 (133)
T cd08384 81 KTLEITVWDKDIGKSNDYIGGLQLGIN-AKGERLRHWLDCLKNPDKKIEAWHTL 133 (133)
T ss_pred CEEEEEEEeCCCCCCccEEEEEEEecC-CCCchHHHHHHHHhCCCCChheeecC
Confidence 779999999999999999999999996 46778899999999999999999986
No 15
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.90 E-value=2.7e-23 Score=189.96 Aligned_cols=134 Identities=56% Similarity=0.923 Sum_probs=123.7
Q ss_pred CceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCC
Q psy1415 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD 566 (622)
Q Consensus 487 G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~ 566 (622)
|+|.++++|.+..+.|.|.|++|+||+..+..+.+||||++++.+.+....+++|+++.++.||.|||.|.|.+....+.
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~ 80 (134)
T cd00276 1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLE 80 (134)
T ss_pred CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhC
Confidence 78999999999999999999999999999989999999999998766666678999999999999999999998876555
Q ss_pred ccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEec
Q psy1415 567 SVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTY 621 (622)
Q Consensus 567 ~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l 621 (622)
...|.|+|||++..+++++||.+.++++. .+.+..+|++|+..|++.|++||+|
T Consensus 81 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~-~~~~~~~W~~l~~~~~~~~~~wh~~ 134 (134)
T cd00276 81 EVSLVITVVDKDSVGRNEVIGQVVLGPDS-GGEELEHWNEMLASPRKPIARWHKL 134 (134)
T ss_pred CcEEEEEEEecCCCCCCceeEEEEECCCC-CCcHHHHHHHHHhCCCCceEEeeeC
Confidence 56799999999998899999999999987 8899999999999999999999987
No 16
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.90 E-value=2.5e-23 Score=182.76 Aligned_cols=117 Identities=21% Similarity=0.338 Sum_probs=105.2
Q ss_pred CceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCC
Q psy1415 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD 566 (622)
Q Consensus 487 G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~ 566 (622)
|+|.++++|.|..+.|+|.|++|++|+ . .|.+||||++++.+..+ ..+++|+++++|+||+|||.|.|.|+.+++.
T Consensus 1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k-~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~ 76 (118)
T cd08677 1 PKLHYSLSYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEG-QKEAQTALKKLALHTQWEEELVFPLPEEESL 76 (118)
T ss_pred CeEEEEEEEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcC-ccEEEcceecCCCCCccccEEEEeCCHHHhC
Confidence 578999999999999999999999998 3 46699999999976444 3477999999999999999999999998999
Q ss_pred ccEEEEEEEEcCCCCCCceeEEEEECCCCC-CCcccchhhhh
Q psy1415 567 SVSLELLLLDWDRVTKNEVIGRLDLGGDKS-SGTALTHWTDV 607 (622)
Q Consensus 567 ~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~-~~~~~~~W~~L 607 (622)
+.+|.|+|||+|+++++++||++.+++.+. .+.+..||.+|
T Consensus 77 ~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 77 DGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 999999999999999999999999999764 57788899875
No 17
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.88 E-value=1.9e-22 Score=189.97 Aligned_cols=137 Identities=31% Similarity=0.612 Sum_probs=121.7
Q ss_pred CCceeeeccccC------------CccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeee
Q psy1415 486 RGEILLSLCWQP------------AANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYN 553 (622)
Q Consensus 486 ~G~l~i~l~~~~------------~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wn 553 (622)
+|+|.++++|.| ..|.|+|.|++|+||+..+..|.+||||++++.+++....++||++++++.||.||
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn 80 (162)
T cd04020 1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN 80 (162)
T ss_pred CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence 589999999988 55899999999999999999999999999999765544557899999999999999
Q ss_pred cEEEEEec-CCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCC------------CCcccchhhhhhcCCCCceeeEEe
Q psy1415 554 ESFVFEVP-ADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKS------------SGTALTHWTDVCNSPRRQIAEWLT 620 (622)
Q Consensus 554 e~f~f~v~-~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~------------~~~~~~~W~~L~~~p~~~i~~w~~ 620 (622)
|.|.|.+. ..++.+..|.|+|||++.++++++||++.+++... .+.+..||+.|+.+|++.|++..+
T Consensus 81 E~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~~~~~w~~~~~~p~~~~~~~~~ 160 (162)
T cd04020 81 HTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGEEILLWQKMLDNPNSWVEGTLP 160 (162)
T ss_pred CEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCChHHHHHHHHHHhCCCCeEEEEEe
Confidence 99999853 33555667999999999999999999999999853 578899999999999999999999
Q ss_pred cC
Q psy1415 621 YR 622 (622)
Q Consensus 621 l~ 622 (622)
||
T Consensus 161 ~~ 162 (162)
T cd04020 161 LR 162 (162)
T ss_pred cC
Confidence 98
No 18
>KOG1013|consensus
Probab=99.88 E-value=8.4e-24 Score=209.18 Aligned_cols=274 Identities=28% Similarity=0.441 Sum_probs=226.9
Q ss_pred CCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEccc
Q psy1415 297 EGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGI 373 (622)
Q Consensus 297 ~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~ 373 (622)
....|.+.+.+.|......+..++.+|.+|..++ .++..|||++..++++.. +.+|++..+++||.|+|+..+..+
T Consensus 76 at~lg~~~~~~~y~~~~~~~~~tl~~a~~lk~~~-~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i 154 (362)
T KOG1013|consen 76 ATTLGALEFELLYDSESRMLDTTLDRAKGLKPMD-INGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGI 154 (362)
T ss_pred hhhccchhhhhhhhhhhhhcceeechhcccchhh-hhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceeccc
Confidence 3467999999999999999999999999999999 899999999999988765 788999999999999998766545
Q ss_pred CcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccCCceeeEEEEeeccCCCCcccee
Q psy1415 374 TPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGE 453 (622)
Q Consensus 374 ~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~l~~~~~~~~~g~ 453 (622)
..+......+++.|. |.+.+...+++|+..+++..+.+..++.- .
T Consensus 155 ~~~~~~~K~~Rk~vc-------------------dn~~~~~~~sqGq~r~~lkKl~p~q~k~f----------------~ 199 (362)
T KOG1013|consen 155 TDDDTHLKVLRKVVC-------------------DNDKKTHNESQGQSRVSLKKLKPLQRKSF----------------N 199 (362)
T ss_pred ccchhhhhhhheeec-------------------cCcccccccCcccchhhhhccChhhcchh----------------h
Confidence 555555556666766 77888888999999988887762221000 0
Q ss_pred EEEeeecccccCcccccccccCc-cccccccCCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeC
Q psy1415 454 VFYSLQSFETYGHSLSFCRDIQP-RNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYK 532 (622)
Q Consensus 454 ~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~ 532 (622)
.|+ ...+.+ +.-......+|++.+++.|.....-+.|.++++.+|..+|.+|.+||||+.++.++
T Consensus 200 ~cl--------------~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pd 265 (362)
T KOG1013|consen 200 ICL--------------EKSLPSERADRDEDEERGAILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPD 265 (362)
T ss_pred hhh--------------hccCCcccccccchhhccceeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCC
Confidence 011 011111 11111236789999999999999999999999999999999999999999999876
Q ss_pred CeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCC
Q psy1415 533 GQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPR 612 (622)
Q Consensus 533 ~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~ 612 (622)
.....+++|.+.++++||.||+.|.|.+...++..+.+.|+|||++..+..+++|-+..++ ...+.-..||+..+..+.
T Consensus 266 v~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~-~rr~~v~~h~gr~~~~~~ 344 (362)
T KOG1013|consen 266 VGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGG-YRRGEVHKHWGRCLFDQD 344 (362)
T ss_pred cchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccc-cccchhhcCccccccccc
Confidence 6666789999999999999999999999999999999999999999998999999999886 466788899999999999
Q ss_pred CceeeEEec
Q psy1415 613 RQIAEWLTY 621 (622)
Q Consensus 613 ~~i~~w~~l 621 (622)
..+..||.|
T Consensus 345 a~~~~ss~l 353 (362)
T KOG1013|consen 345 ANFERSSGL 353 (362)
T ss_pred ccccccccc
Confidence 999999976
No 19
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.86 E-value=9.5e-22 Score=177.53 Aligned_cols=122 Identities=29% Similarity=0.537 Sum_probs=108.2
Q ss_pred CCceeeeccccCCccEEEEEEEeecCCCCCCCC-CCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCC
Q psy1415 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVT-GLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADN 564 (622)
Q Consensus 486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~-g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~ 564 (622)
+|+|++++.|.+..+.|+|.|++|+||++++.. |.+||||++++.+++....++||+++++++||.|||.|.|.+...+
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~ 80 (125)
T cd08393 1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREE 80 (125)
T ss_pred CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHH
Confidence 599999999999999999999999999999975 8999999999987655455789999999999999999999998767
Q ss_pred CCccEEEEEEEEcCCCCCCceeEEEEECCCCCC-Ccccchhhhh
Q psy1415 565 LDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDV 607 (622)
Q Consensus 565 l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L 607 (622)
+.+..|.|+|||++.++++++||++.|+|.+.. ......||+|
T Consensus 81 l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 81 LPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 777789999999999999999999999998543 3556778876
No 20
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.86 E-value=1.1e-21 Score=176.05 Aligned_cols=120 Identities=20% Similarity=0.303 Sum_probs=108.5
Q ss_pred ceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeE-eeEeeeeeccCCCCCeeecEEEEEecCCCCC
Q psy1415 488 EILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQR-VAKKKTHVKKRTLNPVYNESFVFEVPADNLD 566 (622)
Q Consensus 488 ~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~-~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~ 566 (622)
+|++++.|.+..+.|.|.|++|+||++++..|.+||||++++.++... ..++||+++++++||+|||.|.|+|+..++.
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 689999999999999999999999999998999999999999886643 3478999999999999999999999988889
Q ss_pred ccEEEEEEEEcCCCCCCceeEEEEECCCCC--CCcccchhhhh
Q psy1415 567 SVSLELLLLDWDRVTKNEVIGRLDLGGDKS--SGTALTHWTDV 607 (622)
Q Consensus 567 ~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~--~~~~~~~W~~L 607 (622)
+.+|.|+|||++.++++++||.+.|+|.+. .+....+||+|
T Consensus 82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 82 QKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred cCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 999999999999999999999999999854 33468889976
No 21
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.86 E-value=1.9e-21 Score=175.94 Aligned_cols=122 Identities=30% Similarity=0.397 Sum_probs=108.4
Q ss_pred CCceeeeccccCCccEEEEEEEeecCCCCCCCC-CCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCC
Q psy1415 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVT-GLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADN 564 (622)
Q Consensus 486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~-g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~ 564 (622)
.|+|++++.|.+..+.|.|.|++|+||++++.. |.+||||++++.++.....++||++++++.||+|||.|.|.++..+
T Consensus 1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~ 80 (128)
T cd08392 1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADL 80 (128)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHH
Confidence 389999999999999999999999999999875 9999999999988665556889999999999999999999998777
Q ss_pred CCccEEEEEEEEcCCCCCCceeEEEEECCCCCC----Ccccchhhhh
Q psy1415 565 LDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS----GTALTHWTDV 607 (622)
Q Consensus 565 l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~----~~~~~~W~~L 607 (622)
+.+..|.|+|||++.++++++||++.|+|.+.. +....+||+|
T Consensus 81 l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 81 LSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred hCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 777889999999999999999999999997542 3466778876
No 22
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.85 E-value=3.1e-21 Score=173.31 Aligned_cols=118 Identities=31% Similarity=0.574 Sum_probs=103.9
Q ss_pred CceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEe-cCCCC
Q psy1415 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV-PADNL 565 (622)
Q Consensus 487 G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v-~~~~l 565 (622)
|+|.+++.|. .+.|+|.|++|+||++++ .|.+||||++++.+......++||++++++.||.|||+|.|++ +..++
T Consensus 2 G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l 78 (122)
T cd08381 2 GQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDL 78 (122)
T ss_pred CeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHh
Confidence 8999999998 799999999999999999 9999999999998765555688999999999999999999997 54566
Q ss_pred CccEEEEEEEEcCCCCCCceeEEEEECCCCCCC-cccchhhhh
Q psy1415 566 DSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSG-TALTHWTDV 607 (622)
Q Consensus 566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~-~~~~~W~~L 607 (622)
.+..|.|+|||++.++++++||++.|+|.+... ....+||.|
T Consensus 79 ~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 79 QQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 677899999999999999999999999986553 446778875
No 23
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.85 E-value=8.4e-21 Score=166.83 Aligned_cols=105 Identities=16% Similarity=0.349 Sum_probs=95.5
Q ss_pred eEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc--eeEeeeecCCCCCeeeceeEEcccCcccC
Q psy1415 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ--KVKTRVLRKTRNPIYNEEFTFTGITPHQL 378 (622)
Q Consensus 301 G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~--~~kT~vi~~t~nP~W~e~f~f~~~~~~~l 378 (622)
|+|++++.|.+..+.|+|+|++|++|+ . .|.+||||+++++++.+ +++|++.++|+||+|||+|.|. ++.+++
T Consensus 1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~-~---~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~-v~~~~l 75 (118)
T cd08677 1 PKLHYSLSYDKQKAELHVNILEAENIS-V---DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFP-LPEEES 75 (118)
T ss_pred CeEEEEEEEcCcCCEEEEEEEEecCCC-C---CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEe-CCHHHh
Confidence 589999999999999999999999998 3 35599999999986443 8899999999999999999998 889999
Q ss_pred CCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 379 KGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 379 ~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
.+.+|.|+|| |+|+++++++||++.++++++.
T Consensus 76 ~~~tL~~~V~-------------------d~Drfs~~d~IG~v~l~l~~~~ 107 (118)
T cd08677 76 LDGTLTLTLR-------------------CCDRFSRHSTLGELRLKLADVS 107 (118)
T ss_pred CCcEEEEEEE-------------------eCCCCCCCceEEEEEEcccccc
Confidence 9988888888 9999999999999999999874
No 24
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.85 E-value=6e-21 Score=172.22 Aligned_cols=122 Identities=31% Similarity=0.533 Sum_probs=106.7
Q ss_pred CCceeeeccccCCccEEEEEEEeecCCCCCCC-CCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCC
Q psy1415 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDV-TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADN 564 (622)
Q Consensus 486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~-~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~ 564 (622)
.|+|++++.|.+..+.|.|.|++|+||++.+. .|.+||||++++.+++....++||+++++++||.|||.|.|.+...+
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~ 80 (125)
T cd04029 1 SGEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQ 80 (125)
T ss_pred CcEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHH
Confidence 48999999999999999999999999998875 58899999999987665555789999999999999999999998766
Q ss_pred CCccEEEEEEEEcCCCCCCceeEEEEECCCCCC-Ccccchhhhh
Q psy1415 565 LDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDV 607 (622)
Q Consensus 565 l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L 607 (622)
+.+..|.|+|||++.++++++||++.|+|.... ......||+|
T Consensus 81 l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 81 LETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred hCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 777789999999999999999999999997542 4556677765
No 25
>KOG2059|consensus
Probab=99.84 E-value=5.9e-21 Score=204.47 Aligned_cols=233 Identities=17% Similarity=0.179 Sum_probs=182.8
Q ss_pred ccccccceeccccCCcccCCCCCCCCCccceeeecCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCcccCCCeEEEE
Q psy1415 169 EAKKLALSQMTLKRPTAVRSPAAAGPNSHYLKKSPSPTYATPVASLVNSPTGSTNSNNGAGSNSHSPIQPCVALPGTVVI 248 (622)
Q Consensus 169 ~~~~l~~~~~~~~~~~a~~~~~~~dp~~~~vk~~~~p~~~~~~kT~v~~~t~nP~~~E~~~f~~~~~~~~~~~~L~~~V~ 248 (622)
..+.|.+++.+++.+|+.+..|++|| |.-+.+ +..--.+|.++.++++|.|.|.|+|..+..+ +.|.|.||
T Consensus 3 ~~~sl~vki~E~knL~~~~~~g~~D~---yC~v~l--D~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F----~~l~fYv~ 73 (800)
T KOG2059|consen 3 VEQSLKVKIGEAKNLPSYGPSGMRDC---YCTVNL--DQEEVCRTATVEKSLCPFFGEEFYFEIPRTF----RYLSFYVW 73 (800)
T ss_pred cccceeEEEeecccCCCCCCCCCcCc---ceEEee--cchhhhhhhhhhhhcCCccccceEEecCcce----eeEEEEEe
Confidence 34667889999999999999999999 999987 4455669999999999999999999988766 89999999
Q ss_pred eccccCCCcceeeeccCCCCCCCCCCCCCCCccccccccccccCCCCCCCcceEEEEEEEEEC--CCCEEEEEEEEeeCC
Q psy1415 249 TENEKAAPLVLGVAGPTTAGNGPAANGTDSDDSCALVNKETVDCDGNAEGKLGQIFFKIKYQE--KENVLVVTVIKCRDL 326 (622)
Q Consensus 249 d~d~~~~dd~lG~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~l~~~~--~~~~L~V~vi~a~~L 326 (622)
|.| +++|+.||++.+.-.+|..++ +.+. |+.++.+++. .+..|+|++.+...+ ....+...+++++++
T Consensus 74 D~d-~~~D~~IGKvai~re~l~~~~-~~d~-----W~~L~~VD~d---sEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~ 143 (800)
T KOG2059|consen 74 DRD-LKRDDIIGKVAIKREDLHMYP-GKDT-----WFSLQPVDPD---SEVQGKVHLELALTEAIQSSGLVCHVLKTRQG 143 (800)
T ss_pred ccc-cccccccceeeeeHHHHhhCC-CCcc-----ceeccccCCC---hhhceeEEEEEEeccccCCCcchhhhhhhccc
Confidence 999 999999999999999998887 4444 8888877543 445699999988866 356678888899998
Q ss_pred CCCCCCCCCCCCEEEEEEeCCCc--eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEE
Q psy1415 327 FIKDTPSGSSDPYVKVHLLPDKQ--KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHF 404 (622)
Q Consensus 327 ~~~d~~~~~sDPyv~v~l~~~~~--~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i 404 (622)
-+.+ ++.+|||+.+....+.. ..+|+++++|.||.|+|.|.|. +....-+...-.+.. ...+.-..|++
T Consensus 144 ~P~~--~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~-~~~~~~~s~ks~~~~------~~e~~~l~irv 214 (800)
T KOG2059|consen 144 LPII--NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFE-VTREESYSKKSLFMP------EEEDDMLEIRV 214 (800)
T ss_pred Ccee--CCCCCcceEEeecccchhhccccceeeeccCcchhhheeee-eccccccccchhcCc------ccCCceeeEEE
Confidence 8886 66799999999843332 6799999999999999999997 443321111111111 11122345788
Q ss_pred EEEe-ccCCCCcceeeEEEEeCCccc
Q psy1415 405 VVFS-FDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 405 ~v~d-~d~~~~d~~iG~~~i~l~~l~ 429 (622)
++|+ ++...+++|+|++.+++..+.
T Consensus 215 ~lW~~~~~~~~~~FlGevrv~v~~~~ 240 (800)
T KOG2059|consen 215 DLWNDLNLVINDVFLGEVRVPVDVLR 240 (800)
T ss_pred eeccchhhhhhhhhceeEEeehhhhh
Confidence 8899 555556999999999998775
No 26
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.84 E-value=1.4e-20 Score=172.96 Aligned_cols=123 Identities=30% Similarity=0.519 Sum_probs=107.7
Q ss_pred cCCCCceeeeccccCCccEEEEEEEeecCCCCCC-CCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEec
Q psy1415 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMD-VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP 561 (622)
Q Consensus 483 ~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d-~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~ 561 (622)
....|+|.+++.| ..+.|.|.|++|+||++++ ..|.+||||++++.+++....++||+++++++||+|||.|.|.+.
T Consensus 14 ~~~~G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~ 91 (146)
T cd04028 14 SPSMGDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS 91 (146)
T ss_pred CCCcceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc
Confidence 4568999999999 4789999999999999874 578999999999988766666889999999999999999999997
Q ss_pred CCCCCccEEEEEEE-EcCCCCCCceeEEEEECCCCCC-CcccchhhhhhcC
Q psy1415 562 ADNLDSVSLELLLL-DWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNS 610 (622)
Q Consensus 562 ~~~l~~~~L~i~V~-D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~ 610 (622)
+.+..|.|+|| |++.++++++||.+.|+|+... +.....||.|.+.
T Consensus 92 ---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 92 ---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred ---CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 45667999999 6888889999999999998763 5677889999865
No 27
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.83 E-value=6.7e-20 Score=165.47 Aligned_cols=111 Identities=40% Similarity=0.634 Sum_probs=98.9
Q ss_pred ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCC-CCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCc
Q psy1415 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPS-GSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITP 375 (622)
Q Consensus 300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~-~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~ 375 (622)
+|+|++++.|.+..+.|.|.|++|+||+.++ .. |.+||||++++.|++. ++||+++++++||+|||+|.|. ++.
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d-~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~-v~~ 78 (125)
T cd08393 1 QGSVQFALDYDPKLRELHVHVIQCQDLAAAD-PKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYK-VER 78 (125)
T ss_pred CcEEEEEEEEECCCCEEEEEEEEeCCCCCcC-CCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEE-CCH
Confidence 4999999999999999999999999999998 54 7899999999987763 6899999999999999999997 777
Q ss_pred ccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccC
Q psy1415 376 HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETY 431 (622)
Q Consensus 376 ~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~ 431 (622)
.++....|.|.|| |++.++++++||++.++|.++...
T Consensus 79 ~~l~~~~L~~~V~-------------------d~~~~~~~~~iG~~~i~L~~~~~~ 115 (125)
T cd08393 79 EELPTRVLNLSVW-------------------HRDSLGRNSFLGEVEVDLGSWDWS 115 (125)
T ss_pred HHhCCCEEEEEEE-------------------eCCCCCCCcEeEEEEEecCccccC
Confidence 7777667777777 889889999999999999999733
No 28
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.83 E-value=7.2e-20 Score=165.60 Aligned_cols=122 Identities=31% Similarity=0.551 Sum_probs=103.9
Q ss_pred ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCC-CCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCc
Q psy1415 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPS-GSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITP 375 (622)
Q Consensus 300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~-~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~ 375 (622)
.|+|.+++.|.+..+.|.|.|++|+||+.++ .. |.+||||+++++|+.. ++||++++++.||+|||+|.|. ++.
T Consensus 1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d-~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~-v~~ 78 (128)
T cd08392 1 TGEIEFALHYNFRTSCLEITIKACRNLAYGD-EKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYV-VEA 78 (128)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEecCCCCccC-CCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEE-cCH
Confidence 3899999999999999999999999999988 44 8999999999988753 7899999999999999999998 777
Q ss_pred ccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccCC-ceeeEEEEee
Q psy1415 376 HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYG-STLHFVVFSF 442 (622)
Q Consensus 376 ~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~~-~~~~~~~~~l 442 (622)
.++....|.+.|| |++.++++++||++.|+|+++...+ +.....|+.+
T Consensus 79 ~~l~~~~L~v~V~-------------------~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 79 DLLSSRQLQVSVW-------------------HSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred HHhCCcEEEEEEE-------------------eCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 7777777777777 8888889999999999999996333 3444455443
No 29
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.83 E-value=1.2e-19 Score=163.62 Aligned_cols=110 Identities=42% Similarity=0.724 Sum_probs=97.6
Q ss_pred eEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCccc
Q psy1415 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPHQ 377 (622)
Q Consensus 301 G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~~ 377 (622)
|+|++++.|.+..+.|.|.|++|+||...+...+.+||||++++.+++. ++||+++++++||+|||+|.|. ++..+
T Consensus 2 G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~-i~~~~ 80 (125)
T cd04029 2 GEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYS-ISHSQ 80 (125)
T ss_pred cEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEE-CCHHH
Confidence 8999999999999999999999999998873358899999999987653 7899999999999999999997 77777
Q ss_pred CCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcccc
Q psy1415 378 LKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET 430 (622)
Q Consensus 378 l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~ 430 (622)
+....|.|.|| |++..+++++||++.++++.+..
T Consensus 81 l~~~~L~~~V~-------------------d~~~~~~~~~lG~~~i~l~~~~~ 114 (125)
T cd04029 81 LETRTLQLSVW-------------------HYDRFGRNTFLGEVEIPLDSWNF 114 (125)
T ss_pred hCCCEEEEEEE-------------------ECCCCCCCcEEEEEEEeCCcccc
Confidence 76666777777 99998999999999999999973
No 30
>KOG1003|consensus
Probab=99.83 E-value=2e-22 Score=185.30 Aligned_cols=97 Identities=37% Similarity=0.437 Sum_probs=93.4
Q ss_pred eccCCchhccceeccccccCCccccccccccCCChh---hhh----cCCCCCccCcccchhhHHHHHHHHHHHHHHHHHH
Q psy1415 41 RRRSSPLEAKKLALSQMTLKRPTAVRSPAAAGPNSH---YLK----KSPSPTYATPVANQRVEEYKRQIKQLAVKLKEAE 113 (622)
Q Consensus 41 ~~~k~~e~~~kl~~~e~~l~r~e~~r~~~~e~~~~~---~l~----~lk~~~~~~~~~~~~e~~~~~~i~~l~~~lkeae 113 (622)
.+|||+||+|||+|+|+||||+++ |++++|+++.+ .++ ||||+++++++++|++|.|+++|+.|++||||||
T Consensus 79 adrK~eEVarkL~iiE~dLE~~ee-raE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE 157 (205)
T KOG1003|consen 79 ADRKYEEVARKLVIIEGELERAEE-RAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAE 157 (205)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Confidence 479999999999999999999999 99999999999 666 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccc
Q psy1415 114 ARAEFAEKTVKKLQKEVDRLEVSGH 138 (622)
Q Consensus 114 ~rae~ae~~~~~l~~~~~~le~~~~ 138 (622)
+|||||||+|.+||+++|+||+..+
T Consensus 158 ~rAE~aERsVakLeke~DdlE~kl~ 182 (205)
T KOG1003|consen 158 TRAEFAERRVAKLEKERDDLEEKLE 182 (205)
T ss_pred hhHHHHHHHHHHHcccHHHHHHhhH
Confidence 9999999999999999999999864
No 31
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.83 E-value=3.7e-20 Score=166.98 Aligned_cols=121 Identities=38% Similarity=0.665 Sum_probs=106.9
Q ss_pred CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC
Q psy1415 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 565 (622)
Q Consensus 486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l 565 (622)
+|+|.+++.|.+..+.|.|.|++|+||+.++..|.+||||++++.+.+. .+++|++++++.||.|||.|.|.++..++
T Consensus 2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~--~~~kT~v~~~t~~P~wne~f~f~v~~~~l 79 (124)
T cd08387 2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRS--NTKQSKIHKKTLNPEFDESFVFEVPPQEL 79 (124)
T ss_pred CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCC--CcEeCceEcCCCCCCcccEEEEeCCHHHh
Confidence 6999999999999999999999999999999999999999999965433 26789999999999999999999887666
Q ss_pred CccEEEEEEEEcCCCCCCceeEEEEECCCCCC-Ccccchhhhhh
Q psy1415 566 DSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVC 608 (622)
Q Consensus 566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~ 608 (622)
.+..|.|+|||++.++++++||++.|+|.++. +...+.||+|.
T Consensus 80 ~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 80 PKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 66779999999999999999999999998654 55667787764
No 32
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.82 E-value=5e-20 Score=166.10 Aligned_cols=121 Identities=37% Similarity=0.663 Sum_probs=107.0
Q ss_pred CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC
Q psy1415 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 565 (622)
Q Consensus 486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l 565 (622)
.|+|.+++.|.+..+.|+|.|++|+||+.++..|.+||||++++.+... .+++|++++++.||.|||.|.|.+...++
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~i~~~~l 79 (124)
T cd08385 2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFTFKVPYSEL 79 (124)
T ss_pred ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCC--CceecccCcCCCCCceeeeEEEeCCHHHh
Confidence 6899999999999999999999999999999999999999999976433 36789999999999999999999876566
Q ss_pred CccEEEEEEEEcCCCCCCceeEEEEECCCCC-CCcccchhhhhh
Q psy1415 566 DSVSLELLLLDWDRVTKNEVIGRLDLGGDKS-SGTALTHWTDVC 608 (622)
Q Consensus 566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~-~~~~~~~W~~L~ 608 (622)
.+..|.|+|||++.++++++||++.++|.++ .+....+|++|.
T Consensus 80 ~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 80 GNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 6667999999999999999999999999864 356778888763
No 33
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.82 E-value=5.4e-20 Score=165.54 Aligned_cols=121 Identities=31% Similarity=0.548 Sum_probs=106.1
Q ss_pred CceeeeccccCCccEEEEEEEeecCCCCCC-CCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC
Q psy1415 487 GEILLSLCWQPAANRFTIVVLKARNLPKMD-VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 565 (622)
Q Consensus 487 G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d-~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l 565 (622)
|+|.+++.|.+..+.|+|.|++|+||+.++ ..|.+||||++++.+++....+++|++++++.||.|||.|.|.+...++
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l 80 (123)
T cd08521 1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQL 80 (123)
T ss_pred CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHh
Confidence 789999999999999999999999999998 7889999999999765444447899999999999999999999887666
Q ss_pred CccEEEEEEEEcCCCCCCceeEEEEECCCCC-CCcccchhhhh
Q psy1415 566 DSVSLELLLLDWDRVTKNEVIGRLDLGGDKS-SGTALTHWTDV 607 (622)
Q Consensus 566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~-~~~~~~~W~~L 607 (622)
....|.|+|||++.++++++||++.++|.+. .+....+||+|
T Consensus 81 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 81 ETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 6677999999999999999999999999865 34566778865
No 34
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.82 E-value=4.7e-20 Score=166.42 Aligned_cols=122 Identities=31% Similarity=0.560 Sum_probs=106.2
Q ss_pred CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecC-CC
Q psy1415 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA-DN 564 (622)
Q Consensus 486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~-~~ 564 (622)
.|+|.+++.|.+..+.|+|.|++|++|+.++..+.+||||++++.+.+....+++|++++++.||.|||.|.|.+.. .+
T Consensus 2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~ 81 (125)
T cd04031 2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRET 81 (125)
T ss_pred cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHH
Confidence 58999999999999999999999999999999999999999999764444457799999999999999999998643 44
Q ss_pred CCccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhh
Q psy1415 565 LDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDV 607 (622)
Q Consensus 565 l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L 607 (622)
+....|.|+|||++.++++++||++.++|.+....+..+||+|
T Consensus 82 l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~L 124 (125)
T cd04031 82 LKERTLEVTVWDYDRDGENDFLGEVVIDLADALLDDEPHWYPL 124 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeeEEEEecccccccCCcceEEC
Confidence 5556799999999999999999999999987555566788876
No 35
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.82 E-value=7.8e-20 Score=165.51 Aligned_cols=123 Identities=29% Similarity=0.584 Sum_probs=107.9
Q ss_pred CCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCC
Q psy1415 485 GRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADN 564 (622)
Q Consensus 485 ~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~ 564 (622)
+.|+|.+++.|.+..+.|+|.|++|+||+.++..+.+||||++.+.+++....+++|++++++.||.|||.|.|.+...+
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 1 PLGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred CCeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 36999999999999999999999999999999999999999999977554456889999999999999999999998766
Q ss_pred CCccEEEEEEEEcCCC--CCCceeEEEEECCCCCC-Ccccchhhhh
Q psy1415 565 LDSVSLELLLLDWDRV--TKNEVIGRLDLGGDKSS-GTALTHWTDV 607 (622)
Q Consensus 565 l~~~~L~i~V~D~d~~--~~d~~LG~v~i~L~~~~-~~~~~~W~~L 607 (622)
+++..|.|.|||++.+ +++++||++.|+|.++. +....+||+|
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 6667799999999875 68999999999998653 3556778876
No 36
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.82 E-value=5.7e-19 Score=159.98 Aligned_cols=112 Identities=56% Similarity=1.000 Sum_probs=98.2
Q ss_pred ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCC-CCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCccc
Q psy1415 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPS-GSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQ 377 (622)
Q Consensus 300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~-~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~ 377 (622)
.|+|.+++.|.+..+.|.|+|++|+||+..+ .. +.+||||++++.++++ ++||+++++++||+|||+|.|..++..+
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~-~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~ 80 (128)
T cd08388 2 LGTLFFSLRYNSEKKALLVNIIECRDLPAMD-EQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQ 80 (128)
T ss_pred CeEEEEEEEEECCCCEEEEEEEEeECCCCCC-CCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHH
Confidence 6999999999999999999999999999988 44 8899999999976654 7899999999999999999995466666
Q ss_pred CCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccC
Q psy1415 378 LKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETY 431 (622)
Q Consensus 378 l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~ 431 (622)
+....|.|.|| |++.++++++||++.++|+++...
T Consensus 81 ~~~~~L~~~V~-------------------d~d~~~~d~~lG~~~i~L~~l~~~ 115 (128)
T cd08388 81 LQDLSLHFAVL-------------------SFDRYSRDDVIGEVVCPLAGADLL 115 (128)
T ss_pred hCCCEEEEEEE-------------------EcCCCCCCceeEEEEEeccccCCC
Confidence 66656666666 888889999999999999999754
No 37
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.81 E-value=1.5e-19 Score=162.30 Aligned_cols=107 Identities=29% Similarity=0.459 Sum_probs=99.5
Q ss_pred EEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC---c-eeEeeeecCCCCCeeeceeEEcccCccc
Q psy1415 302 QIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---Q-KVKTRVLRKTRNPIYNEEFTFTGITPHQ 377 (622)
Q Consensus 302 ~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~---~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~ 377 (622)
+|++++.|.+..+.|.|.|++|+||+.++ ..+.+||||+++++|++ . .+||++++++.||+|||+|.|. ++.++
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~-~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~-v~~~~ 79 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALS-IPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVP-ISSTK 79 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccc-cCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEE-CCHHH
Confidence 68999999999999999999999999988 68899999999999877 2 7999999999999999999998 88999
Q ss_pred CCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 378 LKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 378 l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
+.+..|.|.|| |++..+++++||++.++|+++.
T Consensus 80 L~~~~L~~~V~-------------------~~~~~~~~~~lG~~~i~L~~~~ 112 (124)
T cd08680 80 LYQKTLQVDVC-------------------SVGPDQQEECLGGAQISLADFE 112 (124)
T ss_pred hhcCEEEEEEE-------------------eCCCCCceeEEEEEEEEhhhcc
Confidence 98888888888 8888889999999999999996
No 38
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.81 E-value=3.2e-19 Score=160.23 Aligned_cols=106 Identities=38% Similarity=0.673 Sum_probs=94.0
Q ss_pred eEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCccc
Q psy1415 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPHQ 377 (622)
Q Consensus 301 G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~~ 377 (622)
|+|.+++.|. .+.|.|.|++|+||+.++ .+.+||||++++.++.. ++||++++++.||+|||+|.|.+++..+
T Consensus 2 G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~--~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~ 77 (122)
T cd08381 2 GQVKLSISYK--NGTLFVMVMHAKNLPLLD--GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVED 77 (122)
T ss_pred CeEEEEEEEe--CCEEEEEEEEeeCCCCCC--CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHH
Confidence 8999999998 799999999999999997 68899999999987642 7899999999999999999998446666
Q ss_pred CCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 378 LKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 378 l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
+....|.|.|| |++.++++++||++.++|.++.
T Consensus 78 l~~~~L~~~V~-------------------d~d~~~~~~~lG~~~i~l~~l~ 110 (122)
T cd08381 78 LQQRVLQVSVW-------------------SHDSLVENEFLGGVCIPLKKLD 110 (122)
T ss_pred hCCCEEEEEEE-------------------eCCCCcCCcEEEEEEEeccccc
Confidence 66666767666 8998889999999999999997
No 39
>KOG2059|consensus
Probab=99.81 E-value=5.9e-20 Score=196.90 Aligned_cols=236 Identities=29% Similarity=0.464 Sum_probs=177.2
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415 314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR 392 (622)
Q Consensus 314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~ 392 (622)
..|.|.|.+|+||+..+ ..|.+||||.|.+ +.. ++||.++.+++.|.|.|.|.|. ++.. + ..|.|-||
T Consensus 5 ~sl~vki~E~knL~~~~-~~g~~D~yC~v~l--D~E~v~RT~tv~ksL~PF~gEe~~~~-iP~~-F--~~l~fYv~---- 73 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYG-PSGMRDCYCTVNL--DQEEVCRTATVEKSLCPFFGEEFYFE-IPRT-F--RYLSFYVW---- 73 (800)
T ss_pred cceeEEEeecccCCCCC-CCCCcCcceEEee--cchhhhhhhhhhhhcCCccccceEEe-cCcc-e--eeEEEEEe----
Confidence 46889999999999998 7999999999999 766 9999999999999999999997 4432 2 23555555
Q ss_pred CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccCCceeeEEEEeeccCCCCccceeEEEeeecccccCccccccc
Q psy1415 393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCR 472 (622)
Q Consensus 393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~ 472 (622)
|.| +++|+.||.+.|.-.+|..+.+ -.-|+.++..+.
T Consensus 74 ---------------D~d-~~~D~~IGKvai~re~l~~~~~------------------~d~W~~L~~VD~--------- 110 (800)
T KOG2059|consen 74 ---------------DRD-LKRDDIIGKVAIKREDLHMYPG------------------KDTWFSLQPVDP--------- 110 (800)
T ss_pred ---------------ccc-cccccccceeeeeHHHHhhCCC------------------CccceeccccCC---------
Confidence 988 8999999999999888863332 223444433221
Q ss_pred ccCccccccccCCCCceeeeccccCCc--cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCC
Q psy1415 473 DIQPRNLRIKSQGRGEILLSLCWQPAA--NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNP 550 (622)
Q Consensus 473 ~~~~~~~~~~~~~~G~l~i~l~~~~~~--g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP 550 (622)
..+-+|++.+.+.+.+.. .-+...++.++++.+.+ +|.+|||+.+...+... ....+|.+++++.+|
T Consensus 111 ---------dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~-~~~~~T~~~kkt~~p 179 (800)
T KOG2059|consen 111 ---------DSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSK-LKEKKTKVKKKTTNP 179 (800)
T ss_pred ---------ChhhceeEEEEEEeccccCCCcchhhhhhhcccCcee-CCCCCcceEEeecccch-hhccccceeeeccCc
Confidence 234466666666554332 34667777888887766 45599999999854322 224689999999999
Q ss_pred eeecEEEEEecCC-------------CCCccEEEEEEEE-cCCCCCCceeEEEEECCCCCC-CcccchhhhhhcCCCCc
Q psy1415 551 VYNESFVFEVPAD-------------NLDSVSLELLLLD-WDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNSPRRQ 614 (622)
Q Consensus 551 ~wne~f~f~v~~~-------------~l~~~~L~i~V~D-~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p~~~ 614 (622)
.|+|.|+|.+... +.....|.+++|| ++.+..+.|+|++.+++.... ...-..||-|...|.+.
T Consensus 180 ~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~ 258 (800)
T KOG2059|consen 180 QFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGE 258 (800)
T ss_pred chhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcc
Confidence 9999999998755 1123459999998 677777999999999997544 56678899998887653
No 40
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.81 E-value=4.1e-19 Score=160.04 Aligned_cols=109 Identities=33% Similarity=0.614 Sum_probs=99.7
Q ss_pred ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccC
Q psy1415 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQL 378 (622)
Q Consensus 300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l 378 (622)
.|+|++++.|.+..+.|.|+|++|+||+..+ ..+.+||||++.++++++ ++||+++++ .||+|||+|.|..++.+++
T Consensus 2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~-~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l 79 (124)
T cd08389 2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKD-RGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEEL 79 (124)
T ss_pred CEEEEEEEEECCCCCEEEEEEEEecCCCchh-cCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHh
Confidence 6999999999999999999999999999998 788899999999887764 889999888 9999999999976788888
Q ss_pred CCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 379 KGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 379 ~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
.+..|.|.|| |++.++++++||++.++|+++.
T Consensus 80 ~~~~L~~~V~-------------------~~~~~~~~~~lG~~~i~L~~l~ 111 (124)
T cd08389 80 NNMALRFRLY-------------------GVERMRKERLIGEKVVPLSQLN 111 (124)
T ss_pred ccCEEEEEEE-------------------ECCCcccCceEEEEEEeccccC
Confidence 8878888888 8888899999999999999996
No 41
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.81 E-value=2.9e-19 Score=161.93 Aligned_cols=110 Identities=35% Similarity=0.634 Sum_probs=96.5
Q ss_pred CCCceeeeccccCCccEEEEEEEeecCCCCCCCC-CCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEE-EecC
Q psy1415 485 GRGEILLSLCWQPAANRFTIVVLKARNLPKMDVT-GLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVF-EVPA 562 (622)
Q Consensus 485 ~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~-g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f-~v~~ 562 (622)
.+|+|.+++.|.+..+.|+|.|++|+||+.++.. |.+||||++.+.+... .+.||+++++++||.|||.|.| .+..
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~--~~~kT~v~~~t~nP~wnE~F~f~~~~~ 78 (128)
T cd08388 1 KLGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKE--HKVKTRVLRKTRNPVYDETFTFYGIPY 78 (128)
T ss_pred CCeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcC--ceeeccEEcCCCCCceeeEEEEcccCH
Confidence 3699999999999999999999999999999876 8999999999975433 3678999999999999999999 4655
Q ss_pred CCCCccEEEEEEEEcCCCCCCceeEEEEECCCCC
Q psy1415 563 DNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKS 596 (622)
Q Consensus 563 ~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~ 596 (622)
.++.+..|.|+|||++.++++++||++.|+|.+.
T Consensus 79 ~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l 112 (128)
T cd08388 79 NQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGA 112 (128)
T ss_pred HHhCCCEEEEEEEEcCCCCCCceeEEEEEecccc
Confidence 5555667999999999999999999999999843
No 42
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.80 E-value=1.8e-19 Score=160.97 Aligned_cols=117 Identities=21% Similarity=0.389 Sum_probs=99.4
Q ss_pred CceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCC
Q psy1415 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD 566 (622)
Q Consensus 487 G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~ 566 (622)
|+|+++++| ..+.|.|.|++|+||++++ .|.+||||+++++++.....++||++++++.||.|||.|.|.++..++.
T Consensus 1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~ 77 (119)
T cd08685 1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQ 77 (119)
T ss_pred CEEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhC
Confidence 678888887 5789999999999999998 8899999999998866555677999999999999999999999766554
Q ss_pred ccEEEEEEEEcCCCC-CCceeEEEEECCCCCC-Ccccchhhhh
Q psy1415 567 SVSLELLLLDWDRVT-KNEVIGRLDLGGDKSS-GTALTHWTDV 607 (622)
Q Consensus 567 ~~~L~i~V~D~d~~~-~d~~LG~v~i~L~~~~-~~~~~~W~~L 607 (622)
. .|.|+|||++..+ ++++||.+.|+|.++. +.....||.|
T Consensus 78 ~-~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 78 K-RLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred C-EEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 4 5899999998875 4789999999998654 4556777754
No 43
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.79 E-value=1.4e-18 Score=156.71 Aligned_cols=110 Identities=47% Similarity=0.786 Sum_probs=97.1
Q ss_pred cceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCccc
Q psy1415 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQ 377 (622)
Q Consensus 299 ~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~ 377 (622)
+.|+|.+++.|.+..+.|.|+|++|+||+.++ ..+.+||||++++.++.. +++|++++++.||+|||+|.|. +...+
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d-~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~~ 78 (124)
T cd08385 1 KLGKLQFSLDYDFQSNQLTVGIIQAADLPAMD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFK-VPYSE 78 (124)
T ss_pred CccEEEEEEEEeCCCCEEEEEEEEeeCCCCcc-CCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEe-CCHHH
Confidence 36999999999999999999999999999998 688999999999976554 8899999999999999999997 66555
Q ss_pred CCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 378 LKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 378 l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
+....|.|.|| |++..+++++||++.++++++.
T Consensus 79 l~~~~l~~~V~-------------------d~d~~~~~~~lG~~~i~l~~~~ 111 (124)
T cd08385 79 LGNKTLVFSVY-------------------DFDRFSKHDLIGEVRVPLLTVD 111 (124)
T ss_pred hCCCEEEEEEE-------------------eCCCCCCCceeEEEEEecCccc
Confidence 65556666666 8888889999999999999986
No 44
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.79 E-value=1.3e-18 Score=156.79 Aligned_cols=109 Identities=36% Similarity=0.733 Sum_probs=97.2
Q ss_pred ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC-ceeEeeeecCCCCCeeeceeEEcccCcccC
Q psy1415 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQL 378 (622)
Q Consensus 300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~-~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l 378 (622)
.|+|++++.|.+..+.|.|.|++|++|+.++ .++.+||||++++.+++ .+++|++++++.||+|+|+|.|. +...++
T Consensus 2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d-~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~-v~~~~l 79 (124)
T cd08387 2 RGELHFSLEYDKDMGILNVKLIQARNLQPRD-FSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFE-VPPQEL 79 (124)
T ss_pred CCEEEEEEEECCCCCEEEEEEEEeeCCCCCC-CCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEe-CCHHHh
Confidence 5999999999999999999999999999998 78899999999997654 48999999999999999999997 666666
Q ss_pred CCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 379 KGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 379 ~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
....|.|.|| |++.++++++||++.++++++.
T Consensus 80 ~~~~l~i~V~-------------------d~~~~~~~~~iG~~~i~l~~~~ 111 (124)
T cd08387 80 PKRTLEVLLY-------------------DFDQFSRDECIGVVELPLAEVD 111 (124)
T ss_pred CCCEEEEEEE-------------------ECCCCCCCceeEEEEEeccccc
Confidence 5556666666 9888889999999999999997
No 45
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.79 E-value=7.3e-19 Score=160.47 Aligned_cols=107 Identities=26% Similarity=0.383 Sum_probs=96.1
Q ss_pred ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCC--CCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccC
Q psy1415 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPS--GSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGIT 374 (622)
Q Consensus 300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~--~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~ 374 (622)
.|+|.+++.|.+..++|.|.|++|+||..++ .+ +.+||||+|+++++++ ++||+++++++||+|||.|.|. ++
T Consensus 1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d-~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~-v~ 78 (138)
T cd08407 1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQ-LKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFE-LP 78 (138)
T ss_pred CCEEEEEEEEeCCCCeEEEEEEEecCCCccc-cCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEE-CC
Confidence 3899999999999999999999999999887 22 4489999999988664 7899999999999999999998 88
Q ss_pred cccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCc
Q psy1415 375 PHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS 427 (622)
Q Consensus 375 ~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~ 427 (622)
.+++....|.|.|+ |++..+++++||++.+++..
T Consensus 79 ~~~L~~~~L~~~V~-------------------d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 79 SELLAASSVELEVL-------------------NQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred HHHhCccEEEEEEE-------------------eCCCCcCcceeceEEecCcC
Confidence 88888888888887 99999999999999999865
No 46
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.79 E-value=6.8e-19 Score=160.71 Aligned_cols=107 Identities=32% Similarity=0.507 Sum_probs=97.0
Q ss_pred ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCcc
Q psy1415 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPH 376 (622)
Q Consensus 300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~ 376 (622)
.|+|.+++.|.+..+.|.|.|++|+||+..+ ..+.+||||++++.+++. +.||+++++++||+|||+|.|. ++..
T Consensus 1 ~G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~-~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~-v~~~ 78 (136)
T cd08406 1 VGEILLSLSYLPTAERLTVVVVKARNLVWDN-GKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFS-VPAI 78 (136)
T ss_pred CcEEEEEEEEcCCCCEEEEEEEEeeCCCCcc-CCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEE-CCHH
Confidence 4999999999999999999999999999998 789999999999987654 6789999999999999999998 8878
Q ss_pred cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCc
Q psy1415 377 QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS 427 (622)
Q Consensus 377 ~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~ 427 (622)
++.+..|.|.|| |++..+++++||++.++...
T Consensus 79 ~l~~~~l~~~V~-------------------~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 79 VLQDLSLRVTVA-------------------ESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred HhCCcEEEEEEE-------------------eCCCCCCCCeeEEEEECCCC
Confidence 888888888888 88888999999999997654
No 47
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.79 E-value=4.8e-19 Score=159.62 Aligned_cols=120 Identities=27% Similarity=0.488 Sum_probs=105.4
Q ss_pred CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEE-ecCCC
Q psy1415 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VPADN 564 (622)
Q Consensus 486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~-v~~~~ 564 (622)
.|+|.+++.|.+..+.|+|+|++|+||++.+..|.+||||++.+.+... .++||+++++ .||+|||.|.|+ +...+
T Consensus 2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~--~~~kTkv~~~-~nP~fnE~F~f~~i~~~~ 78 (124)
T cd08389 2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKK--QRAKTKVQRG-PNPVFNETFTFSRVEPEE 78 (124)
T ss_pred CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCc--ceeecccccC-CCCcccCEEEECCCCHHH
Confidence 5899999999999999999999999999999999999999998876543 3678999888 999999999998 77667
Q ss_pred CCccEEEEEEEEcCCCCCCceeEEEEECCCCCC-Ccccchhhhhh
Q psy1415 565 LDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVC 608 (622)
Q Consensus 565 l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~ 608 (622)
+.+..|.|+|||++.++++++||++.|+|.+.. +.....||+|.
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 79 LNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred hccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 778889999999999999999999999998653 45667788764
No 48
>KOG0696|consensus
Probab=99.78 E-value=1e-19 Score=185.17 Aligned_cols=176 Identities=27% Similarity=0.469 Sum_probs=139.3
Q ss_pred eeEEEEeeccCCCCccceeEEEeeecccccCcccc-----cccccCcccc-ccccCCCCceeeeccccCCccEEEEEEEe
Q psy1415 435 LHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLS-----FCRDIQPRNL-RIKSQGRGEILLSLCWQPAANRFTIVVLK 508 (622)
Q Consensus 435 ~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~G~l~i~l~~~~~~g~L~V~I~~ 508 (622)
..|..+.+.+++..+..|.++|.+-.....-.... .|....|.-. ......+|.|.+.+.. ....|+|.|..
T Consensus 111 Hkf~~~tYssPTFCDhCGsLLyGl~HQGmKC~~C~mNVH~rCv~nVPslCG~DhtE~RGrl~l~~~~--~~~~l~v~i~e 188 (683)
T KOG0696|consen 111 HKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHHRCVENVPSLCGTDHTERRGRLYLEAHI--KRDVLTVTIKE 188 (683)
T ss_pred cceeeeecCCCchhhhHHHHHHHHHhcccccccccchHHHHHhhcCCcccCCcchhhcceEEEEEEe--cCceEEEEehh
Confidence 44556666777777778888877754332111111 2222222221 1345678998888765 56789999999
Q ss_pred ecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCCCCceeEE
Q psy1415 509 ARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGR 588 (622)
Q Consensus 509 A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~LG~ 588 (622)
|+||.+||.+|.|||||++++.++.+...+++|++++.++||+|||+|+|.+...+- +..|.|+|||||+-++++|+|+
T Consensus 189 a~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~Dk-drRlsiEvWDWDrTsRNDFMGs 267 (683)
T KOG0696|consen 189 AKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDK-DRRLSIEVWDWDRTSRNDFMGS 267 (683)
T ss_pred hccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccc-cceeEEEEecccccccccccce
Confidence 999999999999999999999988777789999999999999999999999976554 4569999999999999999999
Q ss_pred EEECCCCCCCcccchhhhhhcCCCC
Q psy1415 589 LDLGGDKSSGTALTHWTDVCNSPRR 613 (622)
Q Consensus 589 v~i~L~~~~~~~~~~W~~L~~~p~~ 613 (622)
..+++++++..+.+.||.|+..-.+
T Consensus 268 lSFgisEl~K~p~~GWyKlLsqeEG 292 (683)
T KOG0696|consen 268 LSFGISELQKAPVDGWYKLLSQEEG 292 (683)
T ss_pred ecccHHHHhhcchhhHHHHhhhhcC
Confidence 9999999999999999999987544
No 49
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.78 E-value=8.7e-19 Score=158.22 Aligned_cols=121 Identities=38% Similarity=0.652 Sum_probs=103.5
Q ss_pred CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEe-cCCC
Q psy1415 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV-PADN 564 (622)
Q Consensus 486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v-~~~~ 564 (622)
+|+|++++.|.+..+.|+|.|++|+||+.++..|.+||||++++.+.+. .+.+|++++++.||.|||.|.|.+ +...
T Consensus 2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~--~~~kT~v~~~t~~P~Wne~f~f~~~~~~~ 79 (125)
T cd08386 2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKK--HKLETKVKRKNLNPHWNETFLFEGFPYEK 79 (125)
T ss_pred ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCC--cceeeeeecCCCCCccceeEEEcccCHHH
Confidence 6999999999999999999999999999999999999999999864333 257999999999999999999984 3333
Q ss_pred CCccEEEEEEEEcCCCCCCceeEEEEECCCCCC-Ccccchhhhhh
Q psy1415 565 LDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVC 608 (622)
Q Consensus 565 l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~ 608 (622)
+.+..|.|+|||++.++++++||++.|++.++. +.....|+.|.
T Consensus 80 l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 80 LQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred hCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 445679999999999999999999999998643 45667788764
No 50
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.78 E-value=5.8e-18 Score=155.71 Aligned_cols=109 Identities=31% Similarity=0.526 Sum_probs=91.0
Q ss_pred CCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEccc
Q psy1415 297 EGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGI 373 (622)
Q Consensus 297 ~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~ 373 (622)
....|+|.+++.| ..+.|.|.|++|+||..++...+.+||||+++++++++ ++||+++++++||+|||+|.|. +
T Consensus 14 ~~~~G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~-v 90 (146)
T cd04028 14 SPSMGDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFD-V 90 (146)
T ss_pred CCCcceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEE-E
Confidence 3457999999999 47899999999999988642568899999999998764 8899999999999999999997 4
Q ss_pred CcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 374 TPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 374 ~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
. +.+..|.|.||+ |++..+++++||++.++|+.+.
T Consensus 91 ~---l~~~~L~v~V~~------------------d~~~~~~~~~iG~~~i~L~~l~ 125 (146)
T cd04028 91 S---PTGKTLQVIVWG------------------DYGRMDKKVFMGVAQILLDDLD 125 (146)
T ss_pred c---CCCCEEEEEEEe------------------CCCCCCCCceEEEEEEEccccc
Confidence 3 344455555551 4677788999999999999986
No 51
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.77 E-value=6.4e-18 Score=152.94 Aligned_cols=109 Identities=37% Similarity=0.659 Sum_probs=96.9
Q ss_pred ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC---ceeEeeeecCCCCCeeeceeEEcccCcc
Q psy1415 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRVLRKTRNPIYNEEFTFTGITPH 376 (622)
Q Consensus 300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~---~~~kT~vi~~t~nP~W~e~f~f~~~~~~ 376 (622)
.|+|.+++.|.+..+.|.|.|++|+||+..+ .++.+||||++++.+++ .++||++++++.||+|||+|.|. +...
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~-i~~~ 79 (127)
T cd04030 2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCD-SSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFP-VSLE 79 (127)
T ss_pred CeEEEEEEEEeCCCCEEEEEEEEEECCCCcc-CCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEe-cCHH
Confidence 5999999999999999999999999999998 68899999999997654 38999999999999999999997 7777
Q ss_pred cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCC--CCcceeeEEEEeCCccc
Q psy1415 377 QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRY--SRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 377 ~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~--~~d~~iG~~~i~l~~l~ 429 (622)
+++...|.+.|| |.+.. +++++||++.+++.++.
T Consensus 80 ~l~~~~l~i~v~-------------------~~~~~~~~~~~~iG~~~i~l~~l~ 115 (127)
T cd04030 80 ELKRRTLDVAVK-------------------NSKSFLSREKKLLGQVLIDLSDLD 115 (127)
T ss_pred HhcCCEEEEEEE-------------------ECCcccCCCCceEEEEEEeccccc
Confidence 776667777777 77764 68999999999999986
No 52
>KOG1013|consensus
Probab=99.77 E-value=4.8e-19 Score=175.64 Aligned_cols=253 Identities=23% Similarity=0.295 Sum_probs=200.2
Q ss_pred hhhhhcccccceeehhhhhhheeeeeeEEEEEeecCCCccccccccceeccccCCcccCCCCCCCCCccceeeecCCCCC
Q psy1415 129 EVDRLEVSGHTVLGLGLAGLVFAATVCLATCYCRRRTSPLEAKKLALSQMTLKRPTAVRSPAAAGPNSHYLKKSPSPTYA 208 (622)
Q Consensus 129 ~~~~le~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~dp~~~~vk~~~~p~~~ 208 (622)
+++..+-.+++-+|.+.+.+.|+. +..-+-.+...+.++-....++..|| ||++.++|.-.
T Consensus 67 ~~~~~d~~~at~lg~~~~~~~y~~----------------~~~~~~~tl~~a~~lk~~~~~~~~d~---~~~~~llpga~ 127 (362)
T KOG1013|consen 67 EVASYDSDPATTLGALEFELLYDS----------------ESRMLDTTLDRAKGLKPMDINGLADP---YVKLHLLPGAG 127 (362)
T ss_pred cccccccchhhhccchhhhhhhhh----------------hhhhcceeechhcccchhhhhhhcch---HHhhhcccchh
Confidence 344444445777999999999998 55566666667777777778888999 99999988655
Q ss_pred --CCccccccCCCCCCCCCCCCCCCCCCCCCcccCCCeEEEEeccccCCCcceeeeccCCCCCCCCCCCCCCCccccccc
Q psy1415 209 --TPVASLVNSPTGSTNSNNGAGSNSHSPIQPCVALPGTVVITENEKAAPLVLGVAGPTTAGNGPAANGTDSDDSCALVN 286 (622)
Q Consensus 209 --~~~kT~v~~~t~nP~~~E~~~f~~~~~~~~~~~~L~~~V~d~d~~~~dd~lG~~~~~l~~l~~~~~~~~~~~~~~~~~ 286 (622)
...+|++..|++||.|+|+-....+.......-.+++.|.|.+.+...+++|+..+.+.-+.+...... . .|+.
T Consensus 128 kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f--~--~cl~ 203 (362)
T KOG1013|consen 128 KLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSF--N--ICLE 203 (362)
T ss_pred hhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchh--h--hhhh
Confidence 356899999999999999977766666666667899999999999999999998887777766553111 1 2222
Q ss_pred ccccc--CCCCCCCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCC
Q psy1415 287 KETVD--CDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRN 361 (622)
Q Consensus 287 ~~~~~--~~~~~~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~n 361 (622)
..... .....-+.+|+|.+++.|......+.|.+++|.+|..+| .++-+||||+.++.++.. ++||.+.++++|
T Consensus 204 ~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssD-sng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~ 282 (362)
T KOG1013|consen 204 KSLPSERADRDEDEERGAILISLAYSSTTPGLIVTIIRCSHLASSD-SNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLN 282 (362)
T ss_pred ccCCcccccccchhhccceeeeeccCcCCCceEEEEEEeeeeeccc-cCCCCCccceeecCCCcchhhcccCcchhccCC
Confidence 22221 112223678999999999999999999999999999999 899999999999987665 889999999999
Q ss_pred CeeeceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeC
Q psy1415 362 PIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSL 425 (622)
Q Consensus 362 P~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l 425 (622)
|.|++.|.|. +.+.+|.+.++.+.|+ |++..+..+++|-....+
T Consensus 283 p~fd~~~~~~-i~pgdLa~~kv~lsvg-------------------d~~~G~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 283 PEFDEEFFYD-IGPGDLAYKKVALSVG-------------------DYDIGKSNDSIGGSMLGG 326 (362)
T ss_pred cccccccccc-CCccchhcceEEEeec-------------------ccCCCcCccCCCcccccc
Confidence 9999999887 8888998888888887 888777888888765543
No 53
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.77 E-value=6e-18 Score=152.65 Aligned_cols=109 Identities=37% Similarity=0.641 Sum_probs=94.7
Q ss_pred ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC---ceeEeeeecCCCCCeeeceeEEcccCcc
Q psy1415 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRVLRKTRNPIYNEEFTFTGITPH 376 (622)
Q Consensus 300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~---~~~kT~vi~~t~nP~W~e~f~f~~~~~~ 376 (622)
.|+|.+++.|.+..+.|.|+|++|++|...+ .++.+||||++++.+++ .+++|++++++.||+|||+|.|.++...
T Consensus 2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 80 (125)
T cd04031 2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRD-DGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRE 80 (125)
T ss_pred cEEEEEEEEEeCCCCEEEEEEEEecCCCCcC-CCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHH
Confidence 5999999999999999999999999999998 68899999999997543 3889999999999999999999755555
Q ss_pred cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcc
Q psy1415 377 QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF 428 (622)
Q Consensus 377 ~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l 428 (622)
++....|.|.|| |++..+++++||++.++|++.
T Consensus 81 ~l~~~~l~~~V~-------------------d~~~~~~~~~iG~~~i~l~~~ 113 (125)
T cd04031 81 TLKERTLEVTVW-------------------DYDRDGENDFLGEVVIDLADA 113 (125)
T ss_pred HhCCCEEEEEEE-------------------eCCCCCCCcEeeEEEEecccc
Confidence 555556666666 888888999999999999984
No 54
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.77 E-value=7.1e-18 Score=152.24 Aligned_cols=110 Identities=43% Similarity=0.728 Sum_probs=95.5
Q ss_pred ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC-ceeEeeeecCCCCCeeeceeEEcccCcccC
Q psy1415 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQL 378 (622)
Q Consensus 300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~-~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l 378 (622)
.|+|++++.|.+..+.|.|.|++|+||+..+ .++.+||||++++.+++ ..++|++++++.||+|||+|.|..++.+.+
T Consensus 2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d-~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l 80 (125)
T cd08386 2 LGRIQFSVSYDFQESTLTLKILKAVELPAKD-FSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKL 80 (125)
T ss_pred ccEEEEEEEECCCCCEEEEEEEEecCCCCcc-CCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHh
Confidence 5999999999999999999999999999998 68899999999997654 489999999999999999999964444445
Q ss_pred CCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 379 KGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 379 ~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
....|.|.|| |++..+++++||++.++++++.
T Consensus 81 ~~~~l~~~v~-------------------d~d~~~~~~~iG~~~i~l~~l~ 112 (125)
T cd08386 81 QQRVLYLQVL-------------------DYDRFSRNDPIGEVSLPLNKVD 112 (125)
T ss_pred CCCEEEEEEE-------------------eCCCCcCCcEeeEEEEeccccc
Confidence 4445555555 9988889999999999999997
No 55
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.77 E-value=2.4e-18 Score=154.88 Aligned_cols=120 Identities=31% Similarity=0.516 Sum_probs=103.5
Q ss_pred CceeeeccccCCccEEEEEEEeecCCCCCC-CCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC
Q psy1415 487 GEILLSLCWQPAANRFTIVVLKARNLPKMD-VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 565 (622)
Q Consensus 487 G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d-~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l 565 (622)
|+|.+++.|.+..+.|+|.|++|+||+.++ ..|.+||||++++.+.+.. ..+|+++++++||.|||.|.|.+....+
T Consensus 1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~--~~~T~v~~~~~~P~wne~f~f~i~~~~l 78 (123)
T cd08390 1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERR--SLQSKVKRKTQNPNFDETFVFQVSFKEL 78 (123)
T ss_pred CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCC--ceEeeeEcCCCCCccceEEEEEcCHHHh
Confidence 789999999999999999999999999998 6889999999999765432 5689999999999999999999876666
Q ss_pred CccEEEEEEEEcCCCCCCceeEEEEECCCCCCC-cccchhhhhh
Q psy1415 566 DSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSG-TALTHWTDVC 608 (622)
Q Consensus 566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~-~~~~~W~~L~ 608 (622)
....|.|.|||++..+++++||++.++|.++.. .....|++|.
T Consensus 79 ~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 79 QRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred cccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 556799999999998899999999999986543 4445777763
No 56
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.76 E-value=1.3e-17 Score=150.03 Aligned_cols=109 Identities=41% Similarity=0.700 Sum_probs=94.4
Q ss_pred eEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCccc
Q psy1415 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPHQ 377 (622)
Q Consensus 301 G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~~ 377 (622)
|+|++++.|.+..+.|.|.|++|+||+..+...+.+||||++++.+++. +++|++++++.||+|||+|.|. +...+
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~-i~~~~ 79 (123)
T cd08521 1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYH-ISKSQ 79 (123)
T ss_pred CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEe-CCHHH
Confidence 8999999999999999999999999998862367899999999976543 7899999999999999999997 66666
Q ss_pred CCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 378 LKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 378 l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
+....|.|.|| |++..+++++||++.++|+++.
T Consensus 80 l~~~~l~i~v~-------------------d~~~~~~~~~iG~~~i~l~~l~ 112 (123)
T cd08521 80 LETRTLQLSVW-------------------HHDRFGRNTFLGEVEIPLDSWD 112 (123)
T ss_pred hCCCEEEEEEE-------------------eCCCCcCCceeeEEEEeccccc
Confidence 65555666655 8888889999999999999996
No 57
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.76 E-value=9.6e-18 Score=158.00 Aligned_cols=113 Identities=35% Similarity=0.602 Sum_probs=96.6
Q ss_pred ceEEEEEEEEEC------------CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC---ceeEeeeecCCCCCee
Q psy1415 300 LGQIFFKIKYQE------------KENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRVLRKTRNPIY 364 (622)
Q Consensus 300 ~G~i~~~l~~~~------------~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~---~~~kT~vi~~t~nP~W 364 (622)
+|+|.+++.|.+ ..+.|.|+|++|+||+..+ .++.+||||++++.+++ .++||++++++.||+|
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d-~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~W 79 (162)
T cd04020 1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALK-SGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVW 79 (162)
T ss_pred CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCC-CCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCC
Confidence 489999999999 5589999999999999998 68999999999987654 2899999999999999
Q ss_pred eceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccCC
Q psy1415 365 NEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYG 432 (622)
Q Consensus 365 ~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~~ 432 (622)
||+|.|..+...++.+..|.|.|| |++.++++++||++.++++++...+
T Consensus 80 nE~f~f~~~~~~~l~~~~L~i~V~-------------------d~d~~~~d~~lG~v~i~l~~~~~~~ 128 (162)
T cd04020 80 NHTFVYDGVSPEDLSQACLELTVW-------------------DHDKLSSNDFLGGVRLGLGTGKSYG 128 (162)
T ss_pred CCEEEEecCCHHHhCCCEEEEEEE-------------------eCCCCCCCceEEEEEEeCCccccCC
Confidence 999999755566665555666665 9998889999999999999987333
No 58
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.75 E-value=1.9e-17 Score=149.14 Aligned_cols=106 Identities=18% Similarity=0.324 Sum_probs=88.9
Q ss_pred eEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCC-CCeeeceeEEcccCcc
Q psy1415 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTR-NPIYNEEFTFTGITPH 376 (622)
Q Consensus 301 G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~-nP~W~e~f~f~~~~~~ 376 (622)
.+|.+++.|+|..++|+|.|++|+||++++ ..+.+||||||++.++++ ++||+++++|+ ||+|||+|.|. ++.+
T Consensus 1 ~el~~sL~Y~p~~~rLtV~VikarnL~~~~-~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fd-v~~~ 78 (135)
T cd08692 1 AELQLGTCFQAVNSRIQLQILEAQNLPSSS-TPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFP-VTQQ 78 (135)
T ss_pred CeEEEEeeecCcCCeEEEEEEEccCCCccc-CCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEe-CCch
Confidence 378999999999999999999999999885 466789999999887665 89999999995 69999999998 6554
Q ss_pred cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcc
Q psy1415 377 QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF 428 (622)
Q Consensus 377 ~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l 428 (622)
+ .+..|.+.|| |+++.+++++||++.++.+..
T Consensus 79 ~-~~v~l~v~v~-------------------d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 79 E-HGIQFLIKLY-------------------SRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred h-heeEEEEEEE-------------------eCCCCcCCceEEEEEECCccC
Confidence 3 2444444444 999999999999999998764
No 59
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.75 E-value=1.9e-17 Score=151.84 Aligned_cols=108 Identities=34% Similarity=0.635 Sum_probs=94.0
Q ss_pred ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCcc
Q psy1415 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPH 376 (622)
Q Consensus 300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~ 376 (622)
.|+|.+++.|.+..+.|.|.|++|++|+.++ .++.+||||+|++.++++ .++|+++++++||.|||+|.|. +...
T Consensus 1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d-~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~ 78 (136)
T cd08402 1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMD-VGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE-VPFE 78 (136)
T ss_pred CcEEEEEeEEcCCCCeEEEEEEEeeCCCccc-CCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEE-CCHH
Confidence 4899999999999999999999999999998 789999999999965443 6789999999999999999997 6666
Q ss_pred cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcc
Q psy1415 377 QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF 428 (622)
Q Consensus 377 ~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l 428 (622)
+++...|.|.|| |++.++++++||++.+++...
T Consensus 79 ~l~~~~l~~~v~-------------------d~~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 79 QIQKVHLIVTVL-------------------DYDRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred HhCCCEEEEEEE-------------------eCCCCCCCceeEEEEECCccC
Confidence 665555666665 999999999999999999764
No 60
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.75 E-value=1.2e-17 Score=153.10 Aligned_cols=108 Identities=28% Similarity=0.429 Sum_probs=97.0
Q ss_pred ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc----eeEeeeecCCCCCeeeceeEEcccCc
Q psy1415 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ----KVKTRVLRKTRNPIYNEEFTFTGITP 375 (622)
Q Consensus 300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~----~~kT~vi~~t~nP~W~e~f~f~~~~~ 375 (622)
.|+|.+++.|.+..++|.|.|++|+||..++ .++.+||||+++++++.+ ++||++++++.||+|||+|.|. ++.
T Consensus 1 ~~ei~~sL~Y~~~~~~L~V~VikarnL~~~~-~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~-i~~ 78 (138)
T cd08408 1 VPELLLGLEYNALTGRLSVEVIKGSNFKNLA-MNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQ-VAL 78 (138)
T ss_pred CCeEEEEeEEcCCCCeEEEEEEEecCCCccc-cCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEE-CCH
Confidence 3789999999999999999999999999998 688999999999987542 6799999999999999999998 888
Q ss_pred ccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcc
Q psy1415 376 HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF 428 (622)
Q Consensus 376 ~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l 428 (622)
+++....|.|.|| |++.++++++||++.+++...
T Consensus 79 ~~l~~~~L~~~V~-------------------~~~~~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 79 FQLSEVTLMFSVY-------------------NKRKMKRKEMIGWFSLGLNSS 112 (138)
T ss_pred HHhCccEEEEEEE-------------------ECCCCCCCcEEEEEEECCcCC
Confidence 8888878888888 888889999999999988754
No 61
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.74 E-value=3.3e-17 Score=147.39 Aligned_cols=110 Identities=36% Similarity=0.732 Sum_probs=94.4
Q ss_pred eEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCC
Q psy1415 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLK 379 (622)
Q Consensus 301 G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~ 379 (622)
|+|.+++.|.+..+.|.|.|++|+||+.++..++.+||||++++.+++. .++|+++++++||+|||.|.|. ++..++.
T Consensus 1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~-i~~~~l~ 79 (123)
T cd08390 1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQ-VSFKELQ 79 (123)
T ss_pred CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEE-cCHHHhc
Confidence 8999999999999999999999999998862267899999999876544 7899999999999999999997 6665554
Q ss_pred CcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcccc
Q psy1415 380 GSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET 430 (622)
Q Consensus 380 ~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~ 430 (622)
...|.|.|| |++..+++++||++.++|+++..
T Consensus 80 ~~~l~i~v~-------------------d~~~~~~~~~iG~~~i~L~~l~~ 111 (123)
T cd08390 80 RRTLRLSVY-------------------DVDRFSRHCIIGHVLFPLKDLDL 111 (123)
T ss_pred ccEEEEEEE-------------------ECCcCCCCcEEEEEEEeccceec
Confidence 445555555 88888889999999999999973
No 62
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.74 E-value=2.1e-17 Score=147.21 Aligned_cols=109 Identities=23% Similarity=0.357 Sum_probs=88.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEEe--CCeEeeEeeeeeccCCCCCeeecEEEEEecCC-CCCccEEEEEEEEc
Q psy1415 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLY--KGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD-NLDSVSLELLLLDW 577 (622)
Q Consensus 501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~--~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~-~l~~~~L~i~V~D~ 577 (622)
.|+|.|++|++|+..+ .|.+||||++++.+ .+....+++|+++.+++||+|||.|.|.+..+ .+....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 4899999999999888 59999999999853 22333467899999999999999999999865 35566799999999
Q ss_pred CCCCCCceeEEEEECCCCCC-CcccchhhhhhcC
Q psy1415 578 DRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNS 610 (622)
Q Consensus 578 d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~ 610 (622)
+..+++++||++.++|.+.. +.....|++|...
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 98889999999999998544 3445668777443
No 63
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.74 E-value=2.4e-17 Score=151.11 Aligned_cols=107 Identities=36% Similarity=0.627 Sum_probs=94.4
Q ss_pred ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCcc
Q psy1415 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPH 376 (622)
Q Consensus 300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~ 376 (622)
+|+|.++++|.+..+.|.|.|++|+||+..+ .++.+||||++++.+++. .+||++++++.||.|+|+|.|. +...
T Consensus 1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d-~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~-v~~~ 78 (136)
T cd08404 1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMD-VSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFD-IPSE 78 (136)
T ss_pred CCeEEEEEEEeCCCCeEEEEEEEeeCCCccc-cCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEE-CCHH
Confidence 4999999999999999999999999999998 789999999999976554 6799999999999999999997 6666
Q ss_pred cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCc
Q psy1415 377 QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS 427 (622)
Q Consensus 377 ~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~ 427 (622)
++....|.|.|| |++..+++++||++.+++..
T Consensus 79 ~~~~~~l~~~v~-------------------d~d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 79 ELEDISVEFLVL-------------------DSDRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred HhCCCEEEEEEE-------------------ECCCCCCCccEEEEEECCcC
Confidence 655556666666 99988999999999999987
No 64
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.73 E-value=2.5e-17 Score=150.44 Aligned_cols=112 Identities=32% Similarity=0.518 Sum_probs=97.7
Q ss_pred CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCe--EeeEeeeeeccCCCCCeeecEEEEEecCC
Q psy1415 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQ--RVAKKKTHVKKRTLNPVYNESFVFEVPAD 563 (622)
Q Consensus 486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~--~~~~~kT~~~~~tlnP~wne~f~f~v~~~ 563 (622)
.|+|.++++|.+..+.|+|.|++|++|+.++..|.+||||++++.+... ...+++|+++++++||.|||.|.|.+...
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 81 (133)
T cd04009 2 YGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPE 81 (133)
T ss_pred ceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechh
Confidence 6899999999999999999999999999999999999999999965432 23478999999999999999999998753
Q ss_pred C--CCccEEEEEEEEcCCCCCCceeEEEEECCCCCC
Q psy1415 564 N--LDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS 597 (622)
Q Consensus 564 ~--l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~ 597 (622)
+ ..+..|.|+|||++.++++++||++.++|.++.
T Consensus 82 ~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 82 QCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIP 117 (133)
T ss_pred hcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCC
Confidence 2 345679999999999999999999999997443
No 65
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.73 E-value=3.3e-17 Score=149.97 Aligned_cols=107 Identities=30% Similarity=0.571 Sum_probs=93.2
Q ss_pred eEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCccc
Q psy1415 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPHQ 377 (622)
Q Consensus 301 G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~~ 377 (622)
|+|.+++.|.+..+.|.|.|++|++|+..| .++.+||||++++.++.. +++|++++++.||+|||+|.|. +...+
T Consensus 1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d-~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~-i~~~~ 78 (135)
T cd08410 1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTD-MSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFK-VPQEE 78 (135)
T ss_pred CcEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEe-CCHHH
Confidence 789999999999999999999999999998 688999999999866543 6899999999999999999998 77777
Q ss_pred CCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcc
Q psy1415 378 LKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF 428 (622)
Q Consensus 378 l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l 428 (622)
++...|.|.|| |++..+++++||++.++....
T Consensus 79 l~~~~l~~~V~-------------------d~d~~~~~~~iG~~~l~~~~~ 110 (135)
T cd08410 79 LENVSLVFTVY-------------------GHNVKSSNDFIGRIVIGQYSS 110 (135)
T ss_pred hCCCEEEEEEE-------------------eCCCCCCCcEEEEEEEcCccC
Confidence 76666777777 888889999999988765433
No 66
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.73 E-value=2.1e-17 Score=150.48 Aligned_cols=127 Identities=35% Similarity=0.624 Sum_probs=109.1
Q ss_pred CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC
Q psy1415 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 565 (622)
Q Consensus 486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l 565 (622)
+|+|.+++.|.+ +.|+|.|++|++|+..+..+.+||||++.+.+.+....+++|+++.++.||.||+.|.|.+...+.
T Consensus 1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~ 78 (131)
T cd04026 1 RGRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADK 78 (131)
T ss_pred CcEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhc
Confidence 589999999976 899999999999999998899999999999754444457899999999999999999999875443
Q ss_pred CccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCce
Q psy1415 566 DSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQI 615 (622)
Q Consensus 566 ~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i 615 (622)
...|.|+|||++..+++++||++.++|.+........||+|.+.-.+..
T Consensus 79 -~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~w~~L~~~~~~~~ 127 (131)
T cd04026 79 -DRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKMPVDGWYKLLNQEEGEY 127 (131)
T ss_pred -CCEEEEEEEECCCCCCcceeEEEEEeHHHhCcCccCceEECcCcccccc
Confidence 3469999999999889999999999998777667888999988766543
No 67
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.73 E-value=3.8e-17 Score=149.77 Aligned_cols=108 Identities=37% Similarity=0.647 Sum_probs=94.1
Q ss_pred ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCcc
Q psy1415 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPH 376 (622)
Q Consensus 300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~ 376 (622)
+|+|.+++.|.+..+.|.|+|++|+||+..+ .++.+||||++++.+++. .++|++++++.||+|||+|.|. +..+
T Consensus 1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~-~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~-i~~~ 78 (136)
T cd08405 1 RGELLLSLCYNPTANRITVNIIKARNLKAMD-INGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN-IPLE 78 (136)
T ss_pred CcEEEEEEEEcCCCCeEEEEEEEeeCCCccc-cCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEe-CCHH
Confidence 4999999999999999999999999999988 688999999999876543 6899999999999999999997 6656
Q ss_pred cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcc
Q psy1415 377 QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF 428 (622)
Q Consensus 377 ~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l 428 (622)
+++...|.|.|| |++..+++++||++.+++.+.
T Consensus 79 ~~~~~~l~~~v~-------------------d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 79 RLRETTLIITVM-------------------DKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred HhCCCEEEEEEE-------------------ECCCCCCCcEeEEEEECCccC
Confidence 555555666666 888888999999999999875
No 68
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.72 E-value=5e-17 Score=148.38 Aligned_cols=105 Identities=35% Similarity=0.580 Sum_probs=91.9
Q ss_pred EEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCcccC
Q psy1415 302 QIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPHQL 378 (622)
Q Consensus 302 ~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~~l 378 (622)
+|++++.|.+..+.|.|+|++|++|+..+ .++.+||||++++.+++. +++|+++++++||+|||+|.|. +...++
T Consensus 1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d-~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-~~~~~l 78 (133)
T cd08384 1 KILVSLMYNTQRRGLIVGIIRCVNLAAMD-ANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD-IKHSDL 78 (133)
T ss_pred CEEEEEEEcCCCCEEEEEEEEEcCCCCcC-CCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEE-CCHHHh
Confidence 47899999999999999999999999998 688999999999976542 7899999999999999999997 666666
Q ss_pred CCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCc
Q psy1415 379 KGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS 427 (622)
Q Consensus 379 ~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~ 427 (622)
....|.|.|| |++..+++++||++.++++.
T Consensus 79 ~~~~l~~~V~-------------------d~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 79 AKKTLEITVW-------------------DKDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred CCCEEEEEEE-------------------eCCCCCCccEEEEEEEecCC
Confidence 5556666666 88888899999999999975
No 69
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.72 E-value=7.2e-17 Score=144.22 Aligned_cols=104 Identities=26% Similarity=0.492 Sum_probs=87.4
Q ss_pred eEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCccc
Q psy1415 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPHQ 377 (622)
Q Consensus 301 G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~~ 377 (622)
|+|.+++.| ..+.|.|.|++|+||+.++ .+.+||||+++++|+.. ++||++++++.||+|||+|.|. +..++
T Consensus 1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~--~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~-v~~~~ 75 (119)
T cd08685 1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN--SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFD-VNERD 75 (119)
T ss_pred CEEEEEEEE--cCCEEEEEEEEEECCCCCC--CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEE-cChHH
Confidence 788888888 6789999999999999987 67899999999987653 7799999999999999999997 55555
Q ss_pred CCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCC-CcceeeEEEEeCCccc
Q psy1415 378 LKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYS-RDDIVGEVFYSLQSFE 429 (622)
Q Consensus 378 l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~-~d~~iG~~~i~l~~l~ 429 (622)
+.. .|.|.|| |++... ++++||++.+++.++.
T Consensus 76 ~~~-~l~v~V~-------------------~~~~~~~~~~~lG~~~i~l~~~~ 108 (119)
T cd08685 76 YQK-RLLVTVW-------------------NKLSKSRDSGLLGCMSFGVKSIV 108 (119)
T ss_pred hCC-EEEEEEE-------------------CCCCCcCCCEEEEEEEecHHHhc
Confidence 433 4555555 888765 4789999999999997
No 70
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.72 E-value=4e-17 Score=149.72 Aligned_cols=107 Identities=29% Similarity=0.479 Sum_probs=94.6
Q ss_pred ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCcc
Q psy1415 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPH 376 (622)
Q Consensus 300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~ 376 (622)
.|+|++++.|.+..+.|.|.|++|+||+..+ .+.+||||++++.++++ ++||++++++.||+|||+|.|. ++.+
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~--~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~-i~~~ 77 (137)
T cd08409 1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLD--HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFK-VTSR 77 (137)
T ss_pred CcEEEEEEEECCCCCeEEEEEEEecCCCccc--CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEE-CCHH
Confidence 4999999999999999999999999999887 56799999999987654 6799999999999999999997 7878
Q ss_pred cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcc
Q psy1415 377 QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF 428 (622)
Q Consensus 377 ~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l 428 (622)
++....|.|.|+ |.+..+++++||++.++....
T Consensus 78 ~l~~~~L~~~V~-------------------~~~~~~~~~~lG~v~ig~~~~ 110 (137)
T cd08409 78 QLDTASLSLSVM-------------------QSGGVRKSKLLGRVVLGPFMY 110 (137)
T ss_pred HhCccEEEEEEE-------------------eCCCCCCcceEEEEEECCccc
Confidence 887777777777 888888999999999986543
No 71
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.72 E-value=4.3e-17 Score=147.39 Aligned_cols=106 Identities=27% Similarity=0.442 Sum_probs=90.1
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCC---CCCccEEEEEEEEcC
Q psy1415 502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD---NLDSVSLELLLLDWD 578 (622)
Q Consensus 502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~---~l~~~~L~i~V~D~d 578 (622)
++|+|++|+||+.++..|.+||||++.+. + .+++|+++++++||.|||.|.|.++.. +.....|.|.|||++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~--~---~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~ 75 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG--K---EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRN 75 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEEC--C---eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcc
Confidence 57999999999999999999999999983 2 266899999999999999999999752 234556999999999
Q ss_pred CCCCCceeEEEEECCCCCC---CcccchhhhhhcCCC
Q psy1415 579 RVTKNEVIGRLDLGGDKSS---GTALTHWTDVCNSPR 612 (622)
Q Consensus 579 ~~~~d~~LG~v~i~L~~~~---~~~~~~W~~L~~~p~ 612 (622)
.+++|++||++.|+|.+.. +....+||+|.+.++
T Consensus 76 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~ 112 (126)
T cd08682 76 LLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPG 112 (126)
T ss_pred ccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCC
Confidence 9999999999999998644 456688999987554
No 72
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.71 E-value=5.5e-17 Score=144.83 Aligned_cols=105 Identities=19% Similarity=0.308 Sum_probs=88.6
Q ss_pred cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccC-CCCCeeecEEEEEecCCCCCccEEEEEEEEcC
Q psy1415 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR-TLNPVYNESFVFEVPADNLDSVSLELLLLDWD 578 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~-tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d 578 (622)
|.|+|+|++|++++..+ .|.+||||++.+ ++. +.+|+++.+ +.||.|||.|.|.+.... ..|.|+|||+|
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~l--g~~---~~kT~v~~~~~~nP~WNe~F~f~v~~~~---~~l~~~V~d~d 72 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRV--GHA---VYETPTAYNGAKNPRWNKTIQCTLPEGV---DSIYIEIFDER 72 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEE--CCE---EEEeEEccCCCCCCccCeEEEEEecCCC---cEEEEEEEeCC
Confidence 78999999999998877 799999999999 332 558999876 799999999999997432 35999999999
Q ss_pred CCCCCceeEEEEECCCC-C-CCcccchhhhhhcCCCC
Q psy1415 579 RVTKNEVIGRLDLGGDK-S-SGTALTHWTDVCNSPRR 613 (622)
Q Consensus 579 ~~~~d~~LG~v~i~L~~-~-~~~~~~~W~~L~~~p~~ 613 (622)
.+++|++||++.|++.. . .+...+.||+|.+..++
T Consensus 73 ~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~ 109 (121)
T cd04016 73 AFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGE 109 (121)
T ss_pred CCcCCceEEEEEEECchhccCCCCccccEeCcCccCC
Confidence 99999999999999963 3 45678999999885544
No 73
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.71 E-value=8.8e-17 Score=147.00 Aligned_cols=106 Identities=34% Similarity=0.596 Sum_probs=92.2
Q ss_pred eEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCccc
Q psy1415 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPHQ 377 (622)
Q Consensus 301 G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~~ 377 (622)
|+|.+++.|.+..+.|.|.|++|++|+.++ .++.+||||++++.+++. .++|++++++.||.|+|+|.|. +..+.
T Consensus 1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d-~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~~ 78 (134)
T cd08403 1 GELMFSLCYLPTAGRLTLTIIKARNLKAMD-ITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD-VPPEN 78 (134)
T ss_pred CeEEEEEEEcCCCCEEEEEEEEeeCCCccc-cCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEE-CCHHH
Confidence 789999999999999999999999999998 789999999999875443 7899999999999999999997 66665
Q ss_pred CCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCc
Q psy1415 378 LKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS 427 (622)
Q Consensus 378 l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~ 427 (622)
+....|.|.|| |++..+++++||++.+++..
T Consensus 79 ~~~~~l~~~v~-------------------d~~~~~~~~~IG~~~l~~~~ 109 (134)
T cd08403 79 VDNVSLIIAVV-------------------DYDRVGHNELIGVCRVGPNA 109 (134)
T ss_pred hCCCEEEEEEE-------------------ECCCCCCCceeEEEEECCCC
Confidence 55545666666 99999999999999998763
No 74
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.70 E-value=1.5e-16 Score=145.18 Aligned_cols=110 Identities=36% Similarity=0.645 Sum_probs=92.7
Q ss_pred cceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC-----ceeEeeeecCCCCCeeeceeEEccc
Q psy1415 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-----QKVKTRVLRKTRNPIYNEEFTFTGI 373 (622)
Q Consensus 299 ~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~-----~~~kT~vi~~t~nP~W~e~f~f~~~ 373 (622)
+.|+|.++++|.+..+.|.|.|++|++|+..+ .++.+||||+|++.+.. ..+||+++++++||+|||+|.|. +
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~-~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~-i 78 (133)
T cd04009 1 PYGVLTVKAYYRASEQSLRVEILNARNLLPLD-SNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFN-V 78 (133)
T ss_pred CceEEEEEEEEcCCCCEEEEEEEEeeCCCCcC-CCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEE-e
Confidence 36999999999999999999999999999988 68899999999996543 38999999999999999999997 4
Q ss_pred Ccc--cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 374 TPH--QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 374 ~~~--~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
... ++.... |.++|||++.++++++||++.++|+++.
T Consensus 79 ~~~~~~~~~~~-------------------l~~~V~d~d~~~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 79 PPEQCSVEGAL-------------------LLFTVKDYDLLGSNDFEGEAFLPLNDIP 117 (133)
T ss_pred chhhcccCCCE-------------------EEEEEEecCCCCCCcEeEEEEEeHHHCC
Confidence 332 122334 4455559999989999999999999987
No 75
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.70 E-value=1.6e-16 Score=143.66 Aligned_cols=91 Identities=32% Similarity=0.519 Sum_probs=76.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCc---ccCCCcEEEEEEEeecc
Q psy1415 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITP---HQLKGSTLHFVVFSFDR 392 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~---~~l~~~~L~~~V~d~d~ 392 (622)
++|+|++|+||+.++ .+|.+||||+|++ ++.++||+++++++||+|||+|.|. +.. ++.....|.|.||
T Consensus 1 ~~V~V~~A~~L~~~d-~~g~~dpYv~v~l--~~~~~kT~v~~~t~nP~Wne~f~F~-v~~~~~~~~~~~~l~~~v~---- 72 (126)
T cd08682 1 VQVTVLQARGLLCKG-KSGTNDAYVIIQL--GKEKYSTSVKEKTTSPVWKEECSFE-LPGLLSGNGNRATLQLTVM---- 72 (126)
T ss_pred CEEEEEECcCCcCCC-CCcCCCceEEEEE--CCeeeeeeeecCCCCCEeCceEEEE-ecCcccCCCcCCEEEEEEE----
Confidence 478999999999998 7889999999999 6778999999999999999999997 432 1233344555555
Q ss_pred CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|++.++++++||++.++++++.
T Consensus 73 ---------------d~~~~~~d~~iG~~~i~l~~l~ 94 (126)
T cd08682 73 ---------------HRNLLGLDKFLGQVSIPLNDLD 94 (126)
T ss_pred ---------------EccccCCCceeEEEEEEHHHhh
Confidence 9988889999999999999986
No 76
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.70 E-value=3.5e-16 Score=140.81 Aligned_cols=110 Identities=37% Similarity=0.680 Sum_probs=94.2
Q ss_pred ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCcc
Q psy1415 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPH 376 (622)
Q Consensus 300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~ 376 (622)
.|+|.+++.|.+..+.|.|.|++|++|+..+ ..+.+||||++++.++.. +++|++++++.||+|||+|.|......
T Consensus 1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~-~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~ 79 (123)
T cd04035 1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMD-ANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEE 79 (123)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCC-CCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHH
Confidence 4899999999999999999999999999988 678999999999876542 899999999999999999999535545
Q ss_pred cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcccc
Q psy1415 377 QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET 430 (622)
Q Consensus 377 ~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~ 430 (622)
++.+..+.|.|| |++.. ++++||++.++++++..
T Consensus 80 ~~~~~~l~~~v~-------------------d~~~~-~~~~iG~~~i~l~~l~~ 113 (123)
T cd04035 80 DIQRKTLRLLVL-------------------DEDRF-GNDFLGETRIPLKKLKP 113 (123)
T ss_pred HhCCCEEEEEEE-------------------EcCCc-CCeeEEEEEEEcccCCC
Confidence 555555666666 88887 88999999999999973
No 77
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.70 E-value=1.2e-16 Score=143.96 Aligned_cols=111 Identities=31% Similarity=0.564 Sum_probs=96.2
Q ss_pred CCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEE-ecCCC
Q psy1415 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VPADN 564 (622)
Q Consensus 486 ~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~-v~~~~ 564 (622)
.|+|.+++.|.+..+.|+|.|++|++|++.+..+.+||||++.+.++.....+.+|++++++.||.||+.|.|. +...+
T Consensus 1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~ 80 (123)
T cd04035 1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEED 80 (123)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHH
Confidence 48999999999999999999999999999998899999999999765444457899999999999999999996 43334
Q ss_pred CCccEEEEEEEEcCCCCCCceeEEEEECCCCCC
Q psy1415 565 LDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS 597 (622)
Q Consensus 565 l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~ 597 (622)
+.+..|.|+|||++.+ .+++||.+.++|.++.
T Consensus 81 ~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~ 112 (123)
T cd04035 81 IQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLK 112 (123)
T ss_pred hCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCC
Confidence 4455799999999988 8999999999997554
No 78
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.69 E-value=8.5e-17 Score=148.80 Aligned_cols=109 Identities=23% Similarity=0.409 Sum_probs=91.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEec-------------CCCCCc
Q psy1415 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP-------------ADNLDS 567 (622)
Q Consensus 501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~-------------~~~l~~ 567 (622)
.|+|.|++|+||+. .+|.+||||++++.++.....+++|+++++++||.|||.|.|.+. ..++..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 48999999999988 578999999999976543444779999999999999999999995 224445
Q ss_pred cEEEEEEEEcCCCCCCceeEEEEECCCCCCC--cccchhhhhhcCC
Q psy1415 568 VSLELLLLDWDRVTKNEVIGRLDLGGDKSSG--TALTHWTDVCNSP 611 (622)
Q Consensus 568 ~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~--~~~~~W~~L~~~p 611 (622)
..|.|.|||++.+++|+|||++.|+|..+.. .....||.|....
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 6799999999998899999999999986554 4678999997653
No 79
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.69 E-value=3.1e-16 Score=139.65 Aligned_cols=96 Identities=27% Similarity=0.395 Sum_probs=78.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeC----CC-ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEe
Q psy1415 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLP----DK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFS 389 (622)
Q Consensus 315 ~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~----~~-~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d 389 (622)
.|+|.|++|++|+..+ .|.+||||+|++.. .. ++++|+++.+++||+|||+|.|.+.....+....|.|.||
T Consensus 1 kL~V~Vi~A~~L~~~d--~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~- 77 (120)
T cd08395 1 KVTVKVVAANDLKWQT--TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVK- 77 (120)
T ss_pred CEEEEEEECcCCCccc--CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEE-
Confidence 4889999999999887 48999999999852 22 2679999999999999999999843333445555666666
Q ss_pred eccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccC
Q psy1415 390 FDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETY 431 (622)
Q Consensus 390 ~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~ 431 (622)
|++..+++++||++.++++++...
T Consensus 78 ------------------D~d~~~~dd~IG~~~l~l~~~~~~ 101 (120)
T cd08395 78 ------------------DYCFARDDRLVGVTVLQLRDIAQA 101 (120)
T ss_pred ------------------EecccCCCCEEEEEEEEHHHCcCC
Confidence 888878899999999999999833
No 80
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.69 E-value=8.4e-17 Score=141.90 Aligned_cols=103 Identities=31% Similarity=0.544 Sum_probs=87.9
Q ss_pred EEEEEEeecCCCCCCC-CCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCee-ecEEEEEecCCCCCccEEEEEEEEcCC
Q psy1415 502 FTIVVLKARNLPKMDV-TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVY-NESFVFEVPADNLDSVSLELLLLDWDR 579 (622)
Q Consensus 502 L~V~I~~A~~L~~~d~-~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~w-ne~f~f~v~~~~l~~~~L~i~V~D~d~ 579 (622)
|+|.|++|++|++++. .|.+||||+++++ + .++||+++++++||.| ||.|.|.++...+.+..|.|+|||++.
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~--~---~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~ 75 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG--S---TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT 75 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEEC--C---eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC
Confidence 5799999999999984 7899999999983 2 3778999999999999 999999998766655679999999999
Q ss_pred CCCCceeEEEEECCCCCCC----cccchhhhhhc
Q psy1415 580 VTKNEVIGRLDLGGDKSSG----TALTHWTDVCN 609 (622)
Q Consensus 580 ~~~d~~LG~v~i~L~~~~~----~~~~~W~~L~~ 609 (622)
++++++||++.+++..+.. .....||.|++
T Consensus 76 ~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 76 YSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 9999999999999975433 34667887765
No 81
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.69 E-value=3e-16 Score=142.10 Aligned_cols=93 Identities=38% Similarity=0.537 Sum_probs=78.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCC
Q psy1415 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYS 394 (622)
Q Consensus 315 ~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~ 394 (622)
.|.|.|++|++|...+ .++.+||||++++ +++.++|++++++.||+|||.|.|.+..+..+....|.|.||
T Consensus 1 ~L~V~vi~A~~L~~~d-~~g~~dpyv~v~~--~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~------ 71 (127)
T cd04022 1 KLVVEVVDAQDLMPKD-GQGSSSAYVELDF--DGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVY------ 71 (127)
T ss_pred CeEEEEEEeeCCCCCC-CCCCcCcEEEEEE--CCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEe------
Confidence 3789999999999998 6889999999999 667889999999999999999999744344444445666665
Q ss_pred CCCCCcceEEEEEeccCCC-CcceeeEEEEeCCccc
Q psy1415 395 RDDIGSTLHFVVFSFDRYS-RDDIVGEVFYSLQSFE 429 (622)
Q Consensus 395 ~~d~~~~l~i~v~d~d~~~-~d~~iG~~~i~l~~l~ 429 (622)
|.+.++ ++++||++.++++++.
T Consensus 72 -------------d~~~~~~~d~~lG~v~i~l~~l~ 94 (127)
T cd04022 72 -------------NDRRSGRRRSFLGRVRISGTSFV 94 (127)
T ss_pred -------------eCCCCcCCCCeeeEEEEcHHHcC
Confidence 888776 7999999999999987
No 82
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.68 E-value=1.1e-16 Score=143.81 Aligned_cols=101 Identities=18% Similarity=0.237 Sum_probs=86.7
Q ss_pred EEEEEEEeecC---CCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEc
Q psy1415 501 RFTIVVLKARN---LPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDW 577 (622)
Q Consensus 501 ~L~V~I~~A~~---L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~ 577 (622)
.|.|.|++|++ |+.+|..|.+||||.+.+ +++ +.||+++++++||.|||+|.|.+.... ..|.|+|||+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~--g~~---~~rTk~~~~~~nP~WnE~f~f~v~~~~---~~l~v~V~d~ 72 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKY--GPK---WVRTRTVEDSSNPRWNEQYTWPVYDPC---TVLTVGVFDN 72 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEE--CCE---EeEcCcccCCCCCcceeEEEEEecCCC---CEEEEEEEEC
Confidence 38999999999 888999999999999998 332 568999999999999999999997432 2599999999
Q ss_pred CCCC------CCceeEEEEECCCCCC-Ccccchhhhhhc
Q psy1415 578 DRVT------KNEVIGRLDLGGDKSS-GTALTHWTDVCN 609 (622)
Q Consensus 578 d~~~------~d~~LG~v~i~L~~~~-~~~~~~W~~L~~ 609 (622)
+.++ +|++||++.|+|.... +....+||+|..
T Consensus 73 d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~ 111 (126)
T cd08379 73 SQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLS 111 (126)
T ss_pred CCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence 8874 8999999999987654 566789999984
No 83
>KOG0696|consensus
Probab=99.68 E-value=2.7e-17 Score=167.64 Aligned_cols=116 Identities=35% Similarity=0.715 Sum_probs=103.6
Q ss_pred ccCCCCCCCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeec
Q psy1415 290 VDCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNE 366 (622)
Q Consensus 290 ~~~~~~~~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e 366 (622)
..+..+..+.+|+|.+.++. ....|.|.|.+|+||.++| .+|.|||||++.+.|+.+ ++||++++.++||+|||
T Consensus 158 slCG~DhtE~RGrl~l~~~~--~~~~l~v~i~ea~NLiPMD-pNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNE 234 (683)
T KOG0696|consen 158 SLCGTDHTERRGRLYLEAHI--KRDVLTVTIKEAKNLIPMD-PNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNE 234 (683)
T ss_pred cccCCcchhhcceEEEEEEe--cCceEEEEehhhccccccC-CCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccc
Confidence 45677888899999998887 6789999999999999999 899999999999998765 89999999999999999
Q ss_pred eeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 367 EFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 367 ~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
+|.|. ..+ .|.++.|.+||||||+.+++||+|..++.+++|.
T Consensus 235 tftf~-Lkp--------------------~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~ 276 (683)
T KOG0696|consen 235 TFTFK-LKP--------------------SDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQ 276 (683)
T ss_pred eeEEe-ccc--------------------ccccceeEEEEecccccccccccceecccHHHHh
Confidence 99996 332 4566778888889999999999999999999997
No 84
>KOG1030|consensus
Probab=99.68 E-value=1.7e-16 Score=144.94 Aligned_cols=98 Identities=28% Similarity=0.353 Sum_probs=84.1
Q ss_pred ccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcC
Q psy1415 499 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD 578 (622)
Q Consensus 499 ~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d 578 (622)
.|.|+|.|.+|.||...|..+++||||.+.+++. +.||+++++++||+|||.|+|.|..+. ..|.++|||+|
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q-----~lkT~~v~~n~NPeWNe~ltf~v~d~~---~~lkv~VyD~D 76 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQ-----KLKTRVVYKNLNPEWNEELTFTVKDPN---TPLKVTVYDKD 76 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEECCe-----eeeeeeecCCCCCcccceEEEEecCCC---ceEEEEEEeCC
Confidence 5789999999999999998899999999999433 668999999999999999999998543 34999999999
Q ss_pred CCCCCceeEEEEECCCCCCCcccchhh
Q psy1415 579 RVTKNEVIGRLDLGGDKSSGTALTHWT 605 (622)
Q Consensus 579 ~~~~d~~LG~v~i~L~~~~~~~~~~W~ 605 (622)
.+++|||||.++|+|... -.....||
T Consensus 77 ~fs~dD~mG~A~I~l~p~-~~~~~~~~ 102 (168)
T KOG1030|consen 77 TFSSDDFMGEATIPLKPL-LEAQKMDY 102 (168)
T ss_pred CCCcccccceeeeccHHH-HHHhhhhc
Confidence 999999999999999533 34444555
No 85
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=9.8e-17 Score=148.67 Aligned_cols=108 Identities=38% Similarity=0.588 Sum_probs=90.5
Q ss_pred EEEEEEEeecCCCCCCCCC--------------CCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCC
Q psy1415 501 RFTIVVLKARNLPKMDVTG--------------LADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD 566 (622)
Q Consensus 501 ~L~V~I~~A~~L~~~d~~g--------------~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~ 566 (622)
.|.|+|++|++|+.+|..+ .+||||++.+ ++. +.+|+++++++||+|||.|.|++..+...
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~--~g~---~~kT~v~~~t~nPvWNE~f~f~v~~p~~~ 75 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSF--AGQ---KVKTSVKKNSYNPEWNEQIVFPEMFPPLC 75 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEE--CCE---eeecceEcCCCCCCcceEEEEEeeCCCcC
Confidence 3789999999999998554 6899999998 443 45899999999999999999997654443
Q ss_pred ccEEEEEEEEcCCCCCCceeEEEEECCCCCCCccc--------chhhhhhcCCCCc
Q psy1415 567 SVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTAL--------THWTDVCNSPRRQ 614 (622)
Q Consensus 567 ~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~--------~~W~~L~~~p~~~ 614 (622)
..|.|+|||+|..++|++||++.|++.++...+. .+|+.|++.|++-
T Consensus 76 -~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~ 130 (151)
T cd04018 76 -ERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREY 130 (151)
T ss_pred -CEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcccc
Confidence 3599999999999999999999999976554443 5899999999864
No 86
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.67 E-value=1.4e-16 Score=140.78 Aligned_cols=105 Identities=27% Similarity=0.466 Sum_probs=87.4
Q ss_pred cEEEEEEEeecCCCCCCCC-CCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCC-CccEEEEEEEEc
Q psy1415 500 NRFTIVVLKARNLPKMDVT-GLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL-DSVSLELLLLDW 577 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~d~~-g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l-~~~~L~i~V~D~ 577 (622)
|.|+|+|++|++|+.++.. |.+||||++++...+. .+.+|+++++++||.|||.|.|.+...++ ....|.|+|||+
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~ 78 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGK--PLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDS 78 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCC--ccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeC
Confidence 6899999999999999988 9999999999855442 35799999999999999999998875543 245699999999
Q ss_pred CCCCCCceeEEEEECCCCCCCcccchhhhhh
Q psy1415 578 DRVTKNEVIGRLDLGGDKSSGTALTHWTDVC 608 (622)
Q Consensus 578 d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~ 608 (622)
+.+++|++||++.+++.++. ....|+++.
T Consensus 79 d~~~~dd~lG~~~i~l~~l~--~~~~~~~~~ 107 (111)
T cd04041 79 DRFTADDRLGRVEIDLKELI--EDRNWMGRR 107 (111)
T ss_pred CCCCCCCcceEEEEEHHHHh--cCCCCCccc
Confidence 99999999999999997554 344566553
No 87
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.67 E-value=5.5e-16 Score=141.84 Aligned_cols=96 Identities=27% Similarity=0.455 Sum_probs=83.4
Q ss_pred ccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEE
Q psy1415 495 WQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLL 574 (622)
Q Consensus 495 ~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V 574 (622)
..+..|.|+|.|++|++|++++..|.+||||++.+ +. .+++|+++++++||.||+.|.|.+.. .....|.|+|
T Consensus 10 ~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~--~~---~~~kT~vi~~t~nP~Wne~f~f~v~~--~~~~~l~i~V 82 (136)
T cd08375 10 RASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSM--GS---QEHKTKVVSDTLNPKWNSSMQFFVKD--LEQDVLCITV 82 (136)
T ss_pred CCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEE--CC---EeeeccccCCCCCCccCceEEEEecC--ccCCEEEEEE
Confidence 35567999999999999999999999999999998 22 26799999999999999999999863 3344699999
Q ss_pred EEcCCCCCCceeEEEEECCCCCC
Q psy1415 575 LDWDRVTKNEVIGRLDLGGDKSS 597 (622)
Q Consensus 575 ~D~d~~~~d~~LG~v~i~L~~~~ 597 (622)
||++.+++|++||++.++|.++.
T Consensus 83 ~D~d~~~~d~~lG~~~i~l~~l~ 105 (136)
T cd08375 83 FDRDFFSPDDFLGRTEIRVADIL 105 (136)
T ss_pred EECCCCCCCCeeEEEEEEHHHhc
Confidence 99999999999999999997543
No 88
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.66 E-value=1.3e-15 Score=135.90 Aligned_cols=89 Identities=15% Similarity=0.256 Sum_probs=73.4
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecC-CCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415 314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRK-TRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR 392 (622)
Q Consensus 314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~-t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~ 392 (622)
|.|.|+|++|++|+..+ .|++||||++.+ ++++++|+++.+ +.||+|||+|.|. +... ...|.|.||
T Consensus 2 g~L~v~v~~Ak~l~~~~--~g~sDPYv~i~l--g~~~~kT~v~~~~~~nP~WNe~F~f~-v~~~---~~~l~~~V~---- 69 (121)
T cd04016 2 GRLSITVVQAKLVKNYG--LTRMDPYCRIRV--GHAVYETPTAYNGAKNPRWNKTIQCT-LPEG---VDSIYIEIF---- 69 (121)
T ss_pred cEEEEEEEEccCCCcCC--CCCCCceEEEEE--CCEEEEeEEccCCCCCCccCeEEEEE-ecCC---CcEEEEEEE----
Confidence 68999999999987765 689999999999 778889999875 7999999999997 4322 124555555
Q ss_pred CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCc-cc
Q psy1415 393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS-FE 429 (622)
Q Consensus 393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~-l~ 429 (622)
|+|.+++|++||.+.+++.. +.
T Consensus 70 ---------------d~d~~~~dd~iG~~~i~l~~~~~ 92 (121)
T cd04016 70 ---------------DERAFTMDERIAWTHITIPESVF 92 (121)
T ss_pred ---------------eCCCCcCCceEEEEEEECchhcc
Confidence 99999999999999999964 44
No 89
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.66 E-value=5.1e-15 Score=167.60 Aligned_cols=253 Identities=25% Similarity=0.408 Sum_probs=173.3
Q ss_pred CCCEEEEEEEEeeCCCCCC-CCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEee
Q psy1415 312 KENVLVVTVIKCRDLFIKD-TPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSF 390 (622)
Q Consensus 312 ~~~~L~V~vi~a~~L~~~d-~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~ 390 (622)
+.|.+.+.|.+|++|...+ ..++..|||+.+.. .+....||++.+++.||+|||+|... +.
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~-~~r~~gkT~v~~nt~nPvwNEt~Yi~-ln---------------- 495 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTF-SDRVIGKTRVKKNTLNPVWNETFYIL-LN---------------- 495 (1227)
T ss_pred eeEEEEEEEeeccCcccccccccCCCCceEEEEe-ccccCCccceeeccCCccccceEEEE-ec----------------
Confidence 4588999999999998876 24788999999996 23337799999999999999999764 21
Q ss_pred ccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccCCceeeEEEEeeccCCCCccceeEEEee------------
Q psy1415 391 DRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSL------------ 458 (622)
Q Consensus 391 d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l------------ 458 (622)
.++.+|.++|||.+...+|+.+|.+.++|+.+..+....+.....+ ......|++.|.+
T Consensus 496 ------s~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~---~~~k~vGrL~yDl~ffp~~e~k~~~ 566 (1227)
T COG5038 496 ------SFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL---RNTKNVGRLTYDLRFFPVIEDKKEL 566 (1227)
T ss_pred ------ccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee---ccCccceEEEEeeeeecccCCcccc
Confidence 2334566666699998999999999999998875533322111111 0011112222221
Q ss_pred -------------------ecccccCcc----------c-------------ccccc----------------------c
Q psy1415 459 -------------------QSFETYGHS----------L-------------SFCRD----------------------I 474 (622)
Q Consensus 459 -------------------~~~~~~~~~----------~-------------~~~~~----------------------~ 474 (622)
......... + ..... .
T Consensus 567 ~~s~e~~ed~n~GI~k~tl~~~~~l~~~~~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~ 646 (1227)
T COG5038 567 KGSVEPLEDSNTGILKVTLREVKALDELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVT 646 (1227)
T ss_pred ccccCCcccCCcceeEEEeeccccccCccccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEe
Confidence 110000000 0 00000 0
Q ss_pred Ccc-------------------cc-----ccccCCCCceeeeccccC---------------CccEEEEEEEeecCCCCC
Q psy1415 475 QPR-------------------NL-----RIKSQGRGEILLSLCWQP---------------AANRFTIVVLKARNLPKM 515 (622)
Q Consensus 475 ~~~-------------------~~-----~~~~~~~G~l~i~l~~~~---------------~~g~L~V~I~~A~~L~~~ 515 (622)
.+. .. -....++|.|.++..|.| ..|.++|.|..|.+|...
T Consensus 647 ~d~~~g~~i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~ 726 (1227)
T COG5038 647 FDVQSGKVIATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNE 726 (1227)
T ss_pred cccccCceeccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhccccc
Confidence 000 00 001134577777765544 447899999999999988
Q ss_pred CCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCC
Q psy1415 516 DVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDK 595 (622)
Q Consensus 516 d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~ 595 (622)
...|.+|||+++.+ ++ ..++||-....++||.||+..+.++..+. ..|.+.++|++..+.|.+||.+.+++.+
T Consensus 727 i~g~~~dPya~v~~--n~--~~k~rti~~~~~~npiw~~i~Yv~v~sk~---~r~~l~~~~~~~sgddr~lg~~~i~vsn 799 (1227)
T COG5038 727 IPGGKSDPYATVLV--NN--LVKYRTIYGSSTLNPIWNEILYVPVTSKN---QRLTLECMDYEESGDDRNLGEVNINVSN 799 (1227)
T ss_pred ccCcccccceEEEe--cc--eeEEEEecccCccccceeeeEEEEecCCc---cEEeeeeecchhccccceeceeeeeeee
Confidence 88999999999988 33 35889999999999999999999998652 2388889999999999999999999886
Q ss_pred CCC
Q psy1415 596 SSG 598 (622)
Q Consensus 596 ~~~ 598 (622)
...
T Consensus 800 ~~~ 802 (1227)
T COG5038 800 VSK 802 (1227)
T ss_pred eee
Confidence 554
No 90
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.66 E-value=1.4e-15 Score=138.74 Aligned_cols=106 Identities=37% Similarity=0.608 Sum_probs=92.5
Q ss_pred eEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCccc
Q psy1415 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPHQ 377 (622)
Q Consensus 301 G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~~ 377 (622)
|+|++++.|.+..+.|.|.|++|+||+..+ ..+.+||||++++.+++. .++|++++++.||.|||+|.|. +...+
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~-i~~~~ 78 (134)
T cd00276 1 GELLLSLSYLPTAERLTVVVLKARNLPPSD-GKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD-VPAEQ 78 (134)
T ss_pred CeEEEEEEeeCCCCEEEEEEEEeeCCCCcc-CCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEE-CCHHH
Confidence 789999999999999999999999999988 688999999999976543 6799999999999999999997 66655
Q ss_pred CCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCc
Q psy1415 378 LKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS 427 (622)
Q Consensus 378 l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~ 427 (622)
+....|.|.|| |.+..+++++||++.+++++
T Consensus 79 l~~~~l~~~v~-------------------d~~~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 79 LEEVSLVITVV-------------------DKDSVGRNEVIGQVVLGPDS 109 (134)
T ss_pred hCCcEEEEEEE-------------------ecCCCCCCceeEEEEECCCC
Confidence 54555666666 88887889999999999988
No 91
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.65 E-value=3e-16 Score=142.13 Aligned_cols=105 Identities=29% Similarity=0.479 Sum_probs=89.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCC-CCCccEEEEEEEEcCC
Q psy1415 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD-NLDSVSLELLLLDWDR 579 (622)
Q Consensus 501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~-~l~~~~L~i~V~D~d~ 579 (622)
.|+|.|++|++|++.+..|.+||||++++. +. +++|+++.++.||.|||.|.|.+... .+.+..|.|+|||++.
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~--~~---~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~ 75 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD--GQ---KKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR 75 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC--CE---EecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC
Confidence 489999999999999999999999999983 32 56899999999999999999998743 2334569999999998
Q ss_pred CC-CCceeEEEEECCCCCC--CcccchhhhhhcC
Q psy1415 580 VT-KNEVIGRLDLGGDKSS--GTALTHWTDVCNS 610 (622)
Q Consensus 580 ~~-~d~~LG~v~i~L~~~~--~~~~~~W~~L~~~ 610 (622)
++ ++++||++.|++..+. +....+||+|...
T Consensus 76 ~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~ 109 (127)
T cd04022 76 SGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKR 109 (127)
T ss_pred CcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeC
Confidence 86 8999999999998654 4667889999753
No 92
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.65 E-value=8.3e-16 Score=137.97 Aligned_cols=105 Identities=23% Similarity=0.370 Sum_probs=90.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCC
Q psy1415 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV 580 (622)
Q Consensus 501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~ 580 (622)
.|+|.|++|++|+..+..|.+||||++++ ++. ..++|+++.++.||.|||.|.|.+.. .. ..|.|+|||++..
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~--~~~--~~~kT~~~~~t~nP~Wne~f~f~v~~--~~-~~l~~~v~D~d~~ 73 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKY--GGK--TVYKSKTIYKNLNPVWDEKFTLPIED--VT-QPLYIKVFDYDRG 73 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEE--CCE--EEEEeeeccCCCCCccceeEEEEecC--CC-CeEEEEEEeCCCC
Confidence 37899999999999999999999999998 332 26789999999999999999999863 23 4599999999999
Q ss_pred CCCceeEEEEECCCCCC-CcccchhhhhhcCCC
Q psy1415 581 TKNEVIGRLDLGGDKSS-GTALTHWTDVCNSPR 612 (622)
Q Consensus 581 ~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p~ 612 (622)
+++++||++.+++.++. +.....|++|.+..+
T Consensus 74 ~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~ 106 (121)
T cd04042 74 LTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNS 106 (121)
T ss_pred CCCcceEEEEEEHHHcCCCCCeEEEEECCCCCC
Confidence 99999999999997655 567788999987665
No 93
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.64 E-value=5e-16 Score=144.15 Aligned_cols=107 Identities=30% Similarity=0.513 Sum_probs=90.0
Q ss_pred ccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeE------------------------eeEeeeeeccCCCCC
Q psy1415 495 WQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQR------------------------VAKKKTHVKKRTLNP 550 (622)
Q Consensus 495 ~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~------------------------~~~~kT~~~~~tlnP 550 (622)
..|+.+.|+|.|++|++|.++|..|.+||||++.+.+.... ...++|.++.+++||
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 102 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP 102 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence 46778899999999999999999999999999998543211 124789999999999
Q ss_pred eeecEEEEEecCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhh
Q psy1415 551 VYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDV 607 (622)
Q Consensus 551 ~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L 607 (622)
.|||.|.|.+.. +.+..|.|+|||++ +++||++.++++++.+.+.++||.|
T Consensus 103 ~WnE~F~f~v~~--~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~~~d~W~~L 153 (153)
T cd08676 103 VWNETFRFEVED--VSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSCGLDSWFKL 153 (153)
T ss_pred ccccEEEEEecc--CCCCEEEEEEEecC----CCeEEEEEEEHHHhCCCCCCCeEeC
Confidence 999999999863 34456999999987 8899999999987777778888875
No 94
>KOG1030|consensus
Probab=99.64 E-value=8.9e-16 Score=140.20 Aligned_cols=91 Identities=43% Similarity=0.608 Sum_probs=80.7
Q ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415 313 ENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR 392 (622)
Q Consensus 313 ~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~ 392 (622)
.|.|.|.|++|.||..+| +.++|||||.+.+ ++++.||+++++++||+|||.|.|.+.
T Consensus 5 vGLL~v~v~~g~~L~~rD-~~~sSDPyVVl~l--g~q~lkT~~v~~n~NPeWNe~ltf~v~------------------- 62 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRD-FLGSSDPYVVLEL--GNQKLKTRVVYKNLNPEWNEELTFTVK------------------- 62 (168)
T ss_pred ceEEEEEEEeecCeeeec-cccCCCCeEEEEE--CCeeeeeeeecCCCCCcccceEEEEec-------------------
Confidence 478999999999999999 6699999999999 889999999999999999999999632
Q ss_pred CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|.+.+|++.|||+|.++.||+||.+.|+|..+.
T Consensus 63 ----d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~ 95 (168)
T KOG1030|consen 63 ----DPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLL 95 (168)
T ss_pred ----CCCceEEEEEEeCCCCCcccccceeeeccHHHH
Confidence 344556666669999999999999999999886
No 95
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.64 E-value=6.8e-16 Score=138.10 Aligned_cols=109 Identities=28% Similarity=0.429 Sum_probs=92.1
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy1415 502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 581 (622)
Q Consensus 502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~ 581 (622)
|+|.|++|++|++.+..|.+||||++++.+.+ ..+++|++++++.||.|||.|.|.+.... ...|.|+|||++.+
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~--~~~~kT~vv~~t~nP~Wne~f~f~i~~~~--~~~l~v~v~d~d~~- 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTAS--DEKKRTKTIKNSINPVWNETFEFRIQSQV--KNVLELTVMDEDYV- 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCC--CccCccceecCCCCCccceEEEEEeCccc--CCEEEEEEEECCCC-
Confidence 78999999999999988999999999985432 23679999999999999999999987542 33599999999998
Q ss_pred CCceeEEEEECCCCCC-CcccchhhhhhcCCCCce
Q psy1415 582 KNEVIGRLDLGGDKSS-GTALTHWTDVCNSPRRQI 615 (622)
Q Consensus 582 ~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p~~~i 615 (622)
++++||++.+++..+. +.....|++|...+.+.+
T Consensus 77 ~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l 111 (119)
T cd04036 77 MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQGKEEL 111 (119)
T ss_pred CCcccEEEEEEHHHCCCCCcEEEEEECCCCCCceE
Confidence 8999999999997644 567788999988766655
No 96
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.64 E-value=1.6e-15 Score=135.80 Aligned_cols=115 Identities=22% Similarity=0.382 Sum_probs=99.3
Q ss_pred cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCC
Q psy1415 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 579 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~ 579 (622)
|.|+|.|++|++|+..+..|.+||||++.+ ++. .+++|.++.++.||.|||.|.|.+... +..|.|+|||++.
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~--~~~--~~~kT~~~~~t~~P~Wne~f~~~v~~~---~~~L~v~v~d~~~ 73 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLV--NGI--VKGRTVTISNTLNPVWDEVLYVPVTSP---NQKITLEVMDYEK 73 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEE--CCE--EeeceeEECCCcCCccCceEEEEecCC---CCEEEEEEEECCC
Confidence 579999999999999999999999999998 333 367899999999999999999988643 2369999999999
Q ss_pred CCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEec
Q psy1415 580 VTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTY 621 (622)
Q Consensus 580 ~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l 621 (622)
.+++++||++.+++.++.......||.|+++-.....+...|
T Consensus 74 ~~~d~~IG~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (120)
T cd04045 74 VGKDRSLGSVEINVSDLIKKNEDGKYVEYDDEEERLKRLLSL 115 (120)
T ss_pred CCCCCeeeEEEEeHHHhhCCCCCceEEecCCCcceeeEeecc
Confidence 999999999999998887778899999999876666665554
No 97
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.64 E-value=9.5e-16 Score=136.43 Aligned_cols=106 Identities=34% Similarity=0.458 Sum_probs=90.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCC
Q psy1415 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV 580 (622)
Q Consensus 501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~ 580 (622)
.++|.|++|++|+.++..|.+||||++++ ++ .+.+|++++++.||.|||.|.|.+... .+..|.|+|||++.+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~--~~---~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~~l~v~v~d~~~~ 73 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRL--GN---EKYKSKVCSKTLNPQWLEQFDLHLFDD--QSQILEIEVWDKDTG 73 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEE--CC---EeEecccccCCCCCceeEEEEEEecCC--CCCEEEEEEEECCCC
Confidence 37899999999999999999999999998 33 257899999999999999999998744 244699999999999
Q ss_pred CCCceeEEEEECCCCCC-CcccchhhhhhcCCCC
Q psy1415 581 TKNEVIGRLDLGGDKSS-GTALTHWTDVCNSPRR 613 (622)
Q Consensus 581 ~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p~~ 613 (622)
+++++||++.++|.+.. +.....|++|.+..|+
T Consensus 74 ~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~G~ 107 (116)
T cd08376 74 KKDEFIGRCEIDLSALPREQTHSLELELEDGEGS 107 (116)
T ss_pred CCCCeEEEEEEeHHHCCCCCceEEEEEccCCCcE
Confidence 99999999999997543 4667889999876443
No 98
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.63 E-value=1.1e-15 Score=136.57 Aligned_cols=104 Identities=25% Similarity=0.403 Sum_probs=87.2
Q ss_pred cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeecc-CCCCCeeecEEEEEecCCCCCccEEEEEEEEcC
Q psy1415 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK-RTLNPVYNESFVFEVPADNLDSVSLELLLLDWD 578 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~-~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d 578 (622)
|.|+|.|++|++|++.+..|.+||||++.+.+ .+++|+++. ++.||.|||.|.|.+..+. ...|.|+|||++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~~nP~Wne~f~f~v~~~~--~~~l~i~v~d~~ 73 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG-----VTKKTKTDFRGGQHPEWDEELRFEITEDK--KPILKVAVFDDD 73 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC-----CccccccccCCCCCCccCceEEEEecCCC--CCEEEEEEEeCC
Confidence 67999999999999999999999999999833 256788775 4799999999999998542 346999999999
Q ss_pred CCCCCceeEEEEECCCCC-CCcccchhhhhhcCC
Q psy1415 579 RVTKNEVIGRLDLGGDKS-SGTALTHWTDVCNSP 611 (622)
Q Consensus 579 ~~~~d~~LG~v~i~L~~~-~~~~~~~W~~L~~~p 611 (622)
..+ +++||++.+++.++ .+....+||+|....
T Consensus 74 ~~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~ 106 (118)
T cd08681 74 KRK-PDLIGDTEVDLSPALKEGEFDDWYELTLKG 106 (118)
T ss_pred CCC-CcceEEEEEecHHHhhcCCCCCcEEeccCC
Confidence 876 99999999999864 345679999998653
No 99
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.63 E-value=2.3e-15 Score=131.55 Aligned_cols=99 Identities=29% Similarity=0.355 Sum_probs=81.6
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy1415 502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 581 (622)
Q Consensus 502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~ 581 (622)
|.|.|++|++|+..+..|.+||||++++ ++ .+++|+++.++.||.|||.|.|.+..+.. ..|.|+|||++.
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~--~~---~~~kT~v~~~t~nP~Wne~f~f~v~~~~~--~~l~v~v~d~~~-- 72 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTV--GK---TTQKSKVKERTNNPVWEEGFTFLVRNPEN--QELEIEVKDDKT-- 72 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEE--CC---EEEeCccccCCCCCcccceEEEEeCCCCC--CEEEEEEEECCC--
Confidence 7899999999999998999999999999 33 36789999999999999999999985433 359999999876
Q ss_pred CCceeEEEEECCCCCCC---cccchhhhhhcC
Q psy1415 582 KNEVIGRLDLGGDKSSG---TALTHWTDVCNS 610 (622)
Q Consensus 582 ~d~~LG~v~i~L~~~~~---~~~~~W~~L~~~ 610 (622)
+++||++.++|.++.. ...+.||+|.++
T Consensus 73 -~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 73 -GKSLGSLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred -CCccEEEEEEHHHhhccccceeeeeEecCCC
Confidence 8899999999974332 235667776543
No 100
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.63 E-value=5.4e-15 Score=132.60 Aligned_cols=89 Identities=25% Similarity=0.471 Sum_probs=73.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCC
Q psy1415 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYS 394 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~ 394 (622)
|.|.|++|+||+.++..+|.+||||++++ +++ .++|+++++|+||.|||+|.|. +... ...|.|.||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l--~~~~~~kT~v~~kt~~P~WnE~F~f~-v~~~---~~~l~~~v~------ 69 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNL--DQEEVFRTKTVEKSLCPFFGEDFYFE-IPRT---FRHLSFYIY------ 69 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEE--CCccEEEeeEEECCCCCccCCeEEEE-cCCC---CCEEEEEEE------
Confidence 67899999999987424678999999999 444 7999999999999999999997 4322 124555555
Q ss_pred CCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 395 RDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 395 ~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|++..+++++||.+.++++++.
T Consensus 70 -------------d~~~~~~~~~iG~~~i~l~~l~ 91 (121)
T cd08401 70 -------------DRDVLRRDSVIGKVAIKKEDLH 91 (121)
T ss_pred -------------ECCCCCCCceEEEEEEEHHHcc
Confidence 9999899999999999999987
No 101
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.62 E-value=1.9e-15 Score=133.44 Aligned_cols=95 Identities=35% Similarity=0.546 Sum_probs=78.1
Q ss_pred CEEEEEEEEeeCCCCCCCCC-CCCCCEEEEEEeCCC-ceeEeeeecCCCCCeeeceeEEcccCcccC-CCcEEEEEEEee
Q psy1415 314 NVLVVTVIKCRDLFIKDTPS-GSSDPYVKVHLLPDK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQL-KGSTLHFVVFSF 390 (622)
Q Consensus 314 ~~L~V~vi~a~~L~~~d~~~-~~sDPyv~v~l~~~~-~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l-~~~~L~~~V~d~ 390 (622)
|.|.|+|++|++|+..+ .. +.+||||+|++.+.+ ..++|+++++++||+|||.|.|. +...++ ....
T Consensus 1 G~L~V~v~~a~~L~~~d-~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~-------- 70 (111)
T cd04041 1 GVLVVTIHRATDLPKAD-FGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVL-VTPDEVKAGER-------- 70 (111)
T ss_pred CEEEEEEEEeeCCCccc-CCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEE-eCchhccCCCE--------
Confidence 57999999999999998 56 899999999986443 38899999999999999999996 333322 2233
Q ss_pred ccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 391 DRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 391 d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|.++|||++..+++++||++.+++.++.
T Consensus 71 -----------l~~~V~d~d~~~~dd~lG~~~i~l~~l~ 98 (111)
T cd04041 71 -----------LSCRLWDSDRFTADDRLGRVEIDLKELI 98 (111)
T ss_pred -----------EEEEEEeCCCCCCCCcceEEEEEHHHHh
Confidence 4455559999999999999999999997
No 102
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.62 E-value=5.6e-15 Score=132.79 Aligned_cols=89 Identities=29% Similarity=0.482 Sum_probs=75.0
Q ss_pred EEEEEEEEeeC---CCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeec
Q psy1415 315 VLVVTVIKCRD---LFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFD 391 (622)
Q Consensus 315 ~L~V~vi~a~~---L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d 391 (622)
.|.|.|++|++ |..+| ..|.+||||+|++ ++++.||+++++++||+|||+|.|.+.... ..|.|.||
T Consensus 1 ~L~v~v~~A~~~~~l~~~d-~~g~sDPYv~i~~--g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~----~~l~v~V~--- 70 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKD-GRGSTDAYCVAKY--GPKWVRTRTVEDSSNPRWNEQYTWPVYDPC----TVLTVGVF--- 70 (126)
T ss_pred CeEEEEEEeECCccccccc-cCCCCCeeEEEEE--CCEEeEcCcccCCCCCcceeEEEEEecCCC----CEEEEEEE---
Confidence 37899999999 88888 7899999999999 778899999999999999999999733322 24555555
Q ss_pred cCCCCCCCcceEEEEEeccCC------CCcceeeEEEEeCCccc
Q psy1415 392 RYSRDDIGSTLHFVVFSFDRY------SRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 392 ~~~~~d~~~~l~i~v~d~d~~------~~d~~iG~~~i~l~~l~ 429 (622)
|++.. .+|++||++.++++.+.
T Consensus 71 ----------------d~d~~~~~~~~~~dd~lG~~~i~l~~l~ 98 (126)
T cd08379 71 ----------------DNSQSHWKEAVQPDVLIGKVRIRLSTLE 98 (126)
T ss_pred ----------------ECCCccccccCCCCceEEEEEEEHHHcc
Confidence 77765 38999999999999987
No 103
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.62 E-value=1.5e-15 Score=141.25 Aligned_cols=105 Identities=20% Similarity=0.245 Sum_probs=88.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccC-CCCCeeecEEEEEecCCCCCccEEEEEEEEcCC
Q psy1415 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR-TLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 579 (622)
Q Consensus 501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~-tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~ 579 (622)
.|+|.|++|++|++++..|.+||||++.++ + .+.+|+++.+ ++||.|||.|.|.+..+ ....|.|.|||++.
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~--~---~~~kTk~~~~~t~nP~WNE~F~f~v~~~--~~~~l~v~V~d~~~ 73 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLG--N---QVLRTRPSQTRNGNPSWNEELMFVAAEP--FEDHLILSVEDRVG 73 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEEC--C---EEeeeEeccCCCCCCcccCcEEEEecCc--cCCeEEEEEEEecC
Confidence 389999999999999999999999999993 3 2667888876 69999999999998643 23459999999999
Q ss_pred CCCCceeEEEEECCCCCC-----CcccchhhhhhcCCC
Q psy1415 580 VTKNEVIGRLDLGGDKSS-----GTALTHWTDVCNSPR 612 (622)
Q Consensus 580 ~~~d~~LG~v~i~L~~~~-----~~~~~~W~~L~~~p~ 612 (622)
.+++++||++.|+|.++. +.....||+|.+..+
T Consensus 74 ~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~ 111 (150)
T cd04019 74 PNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGG 111 (150)
T ss_pred CCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCC
Confidence 889999999999998653 245689999997654
No 104
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.62 E-value=1.5e-15 Score=136.62 Aligned_cols=104 Identities=32% Similarity=0.570 Sum_probs=88.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCC
Q psy1415 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV 580 (622)
Q Consensus 501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~ 580 (622)
+|+|.|++|++|+.++..|.+||||++++ .+. +.+|+++++++||.|||.|.|.+.... +..|.|+|||++..
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~--~~~---~~kT~v~~~t~nP~Wne~f~f~~~~~~--~~~l~~~v~d~~~~ 73 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFY--NGQ---TLETSVVKKSCYPRWNEVFEFELMEGA--DSPLSVEVWDWDLV 73 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEE--CCE---EEeceeecCCCCCccCcEEEEEcCCCC--CCEEEEEEEECCCC
Confidence 48999999999999998899999999998 332 468999999999999999999987543 44699999999999
Q ss_pred CCCceeEEEEECCCCCC-CcccchhhhhhcCC
Q psy1415 581 TKNEVIGRLDLGGDKSS-GTALTHWTDVCNSP 611 (622)
Q Consensus 581 ~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p 611 (622)
+++++||++.++|.++. +.....||.|....
T Consensus 74 ~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~ 105 (123)
T cd04025 74 SKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDP 105 (123)
T ss_pred CCCcEeEEEEEEHHHcccCCCCCCEEECCCCC
Confidence 99999999999997553 35568899998643
No 105
>KOG1327|consensus
Probab=99.62 E-value=2.4e-15 Score=160.46 Aligned_cols=184 Identities=19% Similarity=0.179 Sum_probs=153.1
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCcccCCCeEEEEeccc----cCCCcceeeeccCCCCCCCCCCCCCCCcccccccc
Q psy1415 212 ASLVNSPTGSTNSNNGAGSNSHSPIQPCVALPGTVVITENE----KAAPLVLGVAGPTTAGNGPAANGTDSDDSCALVNK 287 (622)
Q Consensus 212 kT~v~~~t~nP~~~E~~~f~~~~~~~~~~~~L~~~V~d~d~----~~~dd~lG~~~~~l~~l~~~~~~~~~~~~~~~~~~ 287 (622)
+|+++++.+||.|-+.| .+.+.|+..|.|+|.+||.++ +..+||+|++.|.++++.+....+..
T Consensus 44 rte~i~~~~~p~f~~~~---~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~--------- 111 (529)
T KOG1327|consen 44 RTEVIRNVLNPFFTKKF---LLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGP--------- 111 (529)
T ss_pred ceeeeeccCCccceeee---chhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhh---------
Confidence 89999999999995444 567999999999999999884 46789999999999999877632111
Q ss_pred ccccCCCCCCCcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc----eeEeeeecCCCCCe
Q psy1415 288 ETVDCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ----KVKTRVLRKTRNPI 363 (622)
Q Consensus 288 ~~~~~~~~~~~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~----~~kT~vi~~t~nP~ 363 (622)
...........|.|.+.++............++|++|.++| .++++|||..++-..+.. .++|+++++++||.
T Consensus 112 --l~~~~~~~~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd-~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~ 188 (529)
T KOG1327|consen 112 --LLLKPGKNAGSGTITISAEEDESDNDVVQFSFRAKNLDPKD-FFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQ 188 (529)
T ss_pred --hhcccCccCCcccEEEEeecccccCceeeeeeeeeecCccc-ccccCCcceEEEEecCCCceeeccccceeccCCCCc
Confidence 00111245567999999999888888888889999999999 899999999999654332 89999999999999
Q ss_pred eeceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 364 YNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 364 W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|.+ |. ++...++. .+.+++++++|||++..+++++||++..++.++.
T Consensus 189 w~~---~~-i~~~~l~~---------------~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 189 WAP---FS-ISLQSLCS---------------KDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQ 235 (529)
T ss_pred ccc---cc-cchhhhcc---------------cCCCCceEEEEeccCCCCCcCceeEecccHHHhc
Confidence 999 65 66676665 6788999999999999999999999999999886
No 106
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.62 E-value=7.6e-15 Score=136.45 Aligned_cols=89 Identities=30% Similarity=0.436 Sum_probs=74.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecC-CCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCC
Q psy1415 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRK-TRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYS 394 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~-t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~ 394 (622)
|.|+|++|++|+.++ .+|.+||||++++ +++.++|+++.+ ++||+|||.|.|.+..+. ...+.|.|+
T Consensus 2 L~V~Vi~A~~L~~~d-~~g~sDPYV~v~l--~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~---~~~l~v~V~------ 69 (150)
T cd04019 2 LRVTVIEAQDLVPSD-KNRVPEVFVKAQL--GNQVLRTRPSQTRNGNPSWNEELMFVAAEPF---EDHLILSVE------ 69 (150)
T ss_pred EEEEEEEeECCCCCC-CCCCCCeEEEEEE--CCEEeeeEeccCCCCCCcccCcEEEEecCcc---CCeEEEEEE------
Confidence 789999999999999 7899999999999 678899999876 699999999999732211 234555555
Q ss_pred CCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 395 RDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 395 ~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|++..+++++||++.++|+++.
T Consensus 70 -------------d~~~~~~dd~lG~v~i~L~~l~ 91 (150)
T cd04019 70 -------------DRVGPNKDEPLGRAVIPLNDIE 91 (150)
T ss_pred -------------EecCCCCCCeEEEEEEEHHHCc
Confidence 8888888999999999999986
No 107
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.62 E-value=2.6e-15 Score=131.68 Aligned_cols=91 Identities=23% Similarity=0.354 Sum_probs=77.3
Q ss_pred cEEEEEEEeecCCCCCCCC----CCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEE
Q psy1415 500 NRFTIVVLKARNLPKMDVT----GLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLL 575 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~d~~----g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~ 575 (622)
|.|.|+|++|++|++.+.. +.+||||++++ ++. ++||+++++++||+|||.|.|.+..... ...|.|.||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~--~~~---~~kT~v~~~t~nPvWne~f~f~v~~~~~-~~~L~~~V~ 74 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISF--GRR---VFRTSWRRHTLNPVFNERLAFEVYPHEK-NFDIQFKVL 74 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEE--CCE---eEeeeeecCCCCCcccceEEEEEeCccC-CCEEEEEEE
Confidence 6899999999999987632 35899999998 322 5689999999999999999999875443 346999999
Q ss_pred EcCCCCCCceeEEEEECCCCC
Q psy1415 576 DWDRVTKNEVIGRLDLGGDKS 596 (622)
Q Consensus 576 D~d~~~~d~~LG~v~i~L~~~ 596 (622)
|++.+++|++||++.++|..+
T Consensus 75 D~d~~~~dd~IG~~~l~L~~l 95 (108)
T cd04039 75 DKDKFSFNDYVATGSLSVQEL 95 (108)
T ss_pred ECCCCCCCcceEEEEEEHHHH
Confidence 999999999999999999743
No 108
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.61 E-value=5.1e-15 Score=136.98 Aligned_cols=105 Identities=29% Similarity=0.443 Sum_probs=75.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC---ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeec
Q psy1415 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFD 391 (622)
Q Consensus 315 ~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~---~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d 391 (622)
.|.|.|++|+||.. . +|.+||||+|++.++. ..++|+++++++||+|||+|.|.+........ ....+.
T Consensus 1 kL~V~Vi~ArnL~~-~--~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~--~~~~~~--- 72 (148)
T cd04010 1 KLSVRVIECSDLAL-K--NGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEK--KQFEMP--- 72 (148)
T ss_pred CEEEEEEeCcCCCC-C--CCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEeccccccc--ccccCC---
Confidence 37899999999987 2 6889999999997643 37899999999999999999997321100000 000000
Q ss_pred cCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 392 RYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 392 ~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
..+.....|.+.|||++..+++++||++.+++..+.
T Consensus 73 --~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~ 108 (148)
T cd04010 73 --EEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLD 108 (148)
T ss_pred --cccccEEEEEEEEEcCCCCCCCceeEEEEEeccccc
Confidence 001112345666679998889999999999999987
No 109
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.61 E-value=3e-15 Score=134.14 Aligned_cols=108 Identities=28% Similarity=0.394 Sum_probs=90.6
Q ss_pred cEEEEEEEeecCCCCCCC------CCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEE
Q psy1415 500 NRFTIVVLKARNLPKMDV------TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELL 573 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~d~------~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~ 573 (622)
|.|+|.|++|++|+.++. .|.+||||++++. + ..++|++++++.||.|||.|.|.+... ....|.|+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~--~---~~~kT~~~~~t~~P~W~e~f~~~v~~~--~~~~l~i~ 73 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG--A---QTFKSKVIKENLNPKWNEVYEAVVDEV--PGQELEIE 73 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC--C---EeEEccccCCCCCCcccceEEEEeCCC--CCCEEEEE
Confidence 579999999999998875 3789999999983 3 367899999999999999999998743 33469999
Q ss_pred EEEcCCCCCCceeEEEEECCCCCCC-cccchhhhhhcCCCCce
Q psy1415 574 LLDWDRVTKNEVIGRLDLGGDKSSG-TALTHWTDVCNSPRRQI 615 (622)
Q Consensus 574 V~D~d~~~~d~~LG~v~i~L~~~~~-~~~~~W~~L~~~p~~~i 615 (622)
|||++.. ++++||.+.+++.+... .....||+|.+.+.+++
T Consensus 74 v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~ 115 (121)
T cd08391 74 LFDEDPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRL 115 (121)
T ss_pred EEecCCC-CCCcEEEEEEEHHHhcccCccceEEECcCCCCceE
Confidence 9999988 89999999999976443 44678999998777776
No 110
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.61 E-value=3.5e-15 Score=137.61 Aligned_cols=112 Identities=29% Similarity=0.406 Sum_probs=93.0
Q ss_pred cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCC
Q psy1415 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 579 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~ 579 (622)
|.|+|.|++|++|+..+. +.+||||++++ +++ +++|++++++.||.|||.|.|.+..+ ...|.|+|||++.
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~--g~~---~~kT~vvk~t~nP~WnE~f~f~i~~~---~~~l~~~V~D~d~ 72 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTL--GNQ---KVKTRVIKKNLNPVWNEELTLSVPNP---MAPLKLEVFDKDT 72 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEE--CCE---EEEeeeEcCCCCCeecccEEEEecCC---CCEEEEEEEECCC
Confidence 679999999999998887 89999999998 332 67899999999999999999999754 4469999999999
Q ss_pred CCCCceeEEEEECCCCCCCcccchhhhhhcCCCCceeeEEec
Q psy1415 580 VTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLTY 621 (622)
Q Consensus 580 ~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i~~w~~l 621 (622)
+++|++||.+.+++.........+|..-... +.+|..|.+-
T Consensus 73 ~~~dd~iG~a~i~l~~l~~~~~~~~~~~~~~-~~~~~~~~~~ 113 (145)
T cd04038 73 FSKDDSMGEAEIDLEPLVEAAKLDHLRDTPG-GTQIKKVLPS 113 (145)
T ss_pred CCCCCEEEEEEEEHHHhhhhhhhhccccCCC-CEEEEEEecC
Confidence 9999999999999987666555555444333 5678888763
No 111
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.61 E-value=1.2e-14 Score=130.51 Aligned_cols=89 Identities=34% Similarity=0.598 Sum_probs=75.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC-ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccC
Q psy1415 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRY 393 (622)
Q Consensus 315 ~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~-~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~ 393 (622)
+|+|+|++|++|+..+ .++.+||||++++ ++ ..++|++++++.||+|||.|.|. +. .. ...|.|.
T Consensus 1 ~L~v~v~~a~~L~~~d-~~g~~Dpyv~v~~--~~~~~~kT~~~~~t~nP~Wne~f~f~-v~--~~-~~~l~~~------- 66 (121)
T cd04042 1 QLDIHLKEGRNLAARD-RGGTSDPYVKFKY--GGKTVYKSKTIYKNLNPVWDEKFTLP-IE--DV-TQPLYIK------- 66 (121)
T ss_pred CeEEEEEEeeCCCCcC-CCCCCCCeEEEEE--CCEEEEEeeeccCCCCCccceeEEEE-ec--CC-CCeEEEE-------
Confidence 4789999999999998 7899999999998 55 48999999999999999999996 32 11 2344444
Q ss_pred CCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 394 SRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 394 ~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|||++..+++++||++.++++++.
T Consensus 67 ------------v~D~d~~~~~~~iG~~~~~l~~l~ 90 (121)
T cd04042 67 ------------VFDYDRGLTDDFMGSAFVDLSTLE 90 (121)
T ss_pred ------------EEeCCCCCCCcceEEEEEEHHHcC
Confidence 459999889999999999999987
No 112
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.60 E-value=3.9e-15 Score=131.28 Aligned_cols=93 Identities=32% Similarity=0.575 Sum_probs=78.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCee-eceeEEcccCcccCCCcEEEEEEEeeccCC
Q psy1415 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIY-NEEFTFTGITPHQLKGSTLHFVVFSFDRYS 394 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W-~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~ 394 (622)
|.|+|++|++|+.++..++.+||||++++ ++.++||+++++++||.| ||.|.|. +...++....|.|.||
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~--~~~~~kT~v~~~~~nP~W~ne~f~f~-i~~~~l~~~~l~i~V~------ 71 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKF--GSTTYKTDVVKKSLNPVWNSEWFRFE-VDDEELQDEPLQIRVM------ 71 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEE--CCeeEecceecCCCCCcccCcEEEEE-cChHHcCCCeEEEEEE------
Confidence 57999999999988733688999999999 568999999999999999 9999997 6555554445666665
Q ss_pred CCCCCcceEEEEEeccCCCCcceeeEEEEeCCcccc
Q psy1415 395 RDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET 430 (622)
Q Consensus 395 ~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~ 430 (622)
|++..+++++||++.+++.++..
T Consensus 72 -------------d~d~~~~~~~iG~~~~~l~~l~~ 94 (110)
T cd08688 72 -------------DHDTYSANDAIGKVYIDLNPLLL 94 (110)
T ss_pred -------------eCCCCCCCCceEEEEEeHHHhcc
Confidence 88888899999999999999973
No 113
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.60 E-value=2.8e-15 Score=135.75 Aligned_cols=104 Identities=25% Similarity=0.403 Sum_probs=89.1
Q ss_pred cEEEEEEEeecCCCCCCC--CCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEc
Q psy1415 500 NRFTIVVLKARNLPKMDV--TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDW 577 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~d~--~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~ 577 (622)
|.|+|.|++|++|+..+. .|.+||||++.+ ++. +++|+++++++||.|||.|.|.+.. ..+..|.|+|||+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~--~~~---~~kT~~~~~t~~P~Wne~f~~~~~~--~~~~~l~i~v~d~ 73 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSV--GAQ---RFKTQTIPNTLNPKWNYWCEFPIFS--AQNQLLKLILWDK 73 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEE--CCE---EEecceecCCcCCccCCcEEEEecC--CCCCEEEEEEEEC
Confidence 679999999999999998 899999999998 322 5789999999999999999999974 2345699999999
Q ss_pred CCCCCCceeEEEEECCCCCC----CcccchhhhhhcC
Q psy1415 578 DRVTKNEVIGRLDLGGDKSS----GTALTHWTDVCNS 610 (622)
Q Consensus 578 d~~~~d~~LG~v~i~L~~~~----~~~~~~W~~L~~~ 610 (622)
+..+++++||++.|++.+.. .....+||.|.+.
T Consensus 74 ~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~ 110 (128)
T cd04024 74 DRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKST 110 (128)
T ss_pred CCCCCCCcceEEEEEHHHhhcccccCccceeEEccCc
Confidence 99989999999999997654 2346789999876
No 114
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.60 E-value=1.3e-14 Score=132.08 Aligned_cols=106 Identities=39% Similarity=0.731 Sum_probs=87.9
Q ss_pred ceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC---ceeEeeeecCCCCCeeeceeEEcccCcc
Q psy1415 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRVLRKTRNPIYNEEFTFTGITPH 376 (622)
Q Consensus 300 ~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~---~~~kT~vi~~t~nP~W~e~f~f~~~~~~ 376 (622)
+|+|.++++|.+ +.|.|.|++|++|+..+ .++.+||||++++.+.+ ..++|++++++.||.|||+|.|. +...
T Consensus 1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~-~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~-~~~~ 76 (131)
T cd04026 1 RGRIYLKISVKD--NKLTVEVREAKNLIPMD-PNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFD-LKPA 76 (131)
T ss_pred CcEEEEEEEECC--CEEEEEEEEeeCCCCcC-CCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEe-CCch
Confidence 489999999976 89999999999999988 67889999999996432 38999999999999999999997 3322
Q ss_pred cCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 377 QLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 377 ~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
+ ....|.+++||++..+++++||++.+++.++.
T Consensus 77 ~--------------------~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~ 109 (131)
T cd04026 77 D--------------------KDRRLSIEVWDWDRTTRNDFMGSLSFGVSELI 109 (131)
T ss_pred h--------------------cCCEEEEEEEECCCCCCcceeEEEEEeHHHhC
Confidence 2 12234455559888889999999999999997
No 115
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.60 E-value=1.2e-14 Score=130.82 Aligned_cols=90 Identities=36% Similarity=0.626 Sum_probs=75.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCC
Q psy1415 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYS 394 (622)
Q Consensus 315 ~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~ 394 (622)
+|+|+|++|++|..++ .++.+||||++++ ++..++|++++++.||.|||+|.|. +.... ...|.|
T Consensus 1 ~L~v~vi~a~~L~~~d-~~~~~DPyv~v~~--~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~~--~~~l~~--------- 65 (123)
T cd04025 1 RLRCHVLEARDLAPKD-RNGTSDPFVRVFY--NGQTLETSVVKKSCYPRWNEVFEFE-LMEGA--DSPLSV--------- 65 (123)
T ss_pred CEEEEEEEeeCCCCCC-CCCCcCceEEEEE--CCEEEeceeecCCCCCccCcEEEEE-cCCCC--CCEEEE---------
Confidence 4899999999999998 6889999999999 6678999999999999999999996 32211 233444
Q ss_pred CCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 395 RDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 395 ~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
+|||++..+++++||++.++++++.
T Consensus 66 ----------~v~d~~~~~~~~~iG~~~~~l~~l~ 90 (123)
T cd04025 66 ----------EVWDWDLVSKNDFLGKVVFSIQTLQ 90 (123)
T ss_pred ----------EEEECCCCCCCcEeEEEEEEHHHcc
Confidence 4559998889999999999999886
No 116
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.60 E-value=7.3e-15 Score=131.16 Aligned_cols=90 Identities=29% Similarity=0.416 Sum_probs=73.6
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeec-CCCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415 314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLR-KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR 392 (622)
Q Consensus 314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~-~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~ 392 (622)
|.|.|.|++|++|+..+ ..+.+||||++++ ++.+++|+++. ++.||+|||.|.|. +.... ...|.|
T Consensus 1 g~L~V~v~~A~~L~~~~-~~~~~dpyv~v~~--~~~~~kT~~~~~~~~nP~Wne~f~f~-v~~~~--~~~l~i------- 67 (118)
T cd08681 1 GTLVVVVLKARNLPNKR-KLDKQDPYCVLRI--GGVTKKTKTDFRGGQHPEWDEELRFE-ITEDK--KPILKV------- 67 (118)
T ss_pred CEEEEEEEEccCCCCCC-cCCCCCceEEEEE--CCCccccccccCCCCCCccCceEEEE-ecCCC--CCEEEE-------
Confidence 57999999999999998 7899999999999 66788999875 57999999999997 43221 233444
Q ss_pred CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
+|||++..+ +++||++.++++++.
T Consensus 68 ------------~v~d~~~~~-~~~iG~~~~~l~~~~ 91 (118)
T cd08681 68 ------------AVFDDDKRK-PDLIGDTEVDLSPAL 91 (118)
T ss_pred ------------EEEeCCCCC-CcceEEEEEecHHHh
Confidence 455888766 899999999999986
No 117
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.59 E-value=6.4e-15 Score=138.28 Aligned_cols=108 Identities=30% Similarity=0.444 Sum_probs=89.2
Q ss_pred cEEEEEEEeecCCCCCC------------------------------CCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCC
Q psy1415 500 NRFTIVVLKARNLPKMD------------------------------VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLN 549 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~d------------------------------~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tln 549 (622)
|.|.|+|++|++|++|| ..|.+||||++.+ ++.. ..||++++++.|
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l--~~~~--~~rT~v~~~~~n 82 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDL--AGAR--VARTRVIENSEN 82 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEE--CCeE--eeEEEEeCCCCC
Confidence 78999999999999988 3567899999998 3332 468999999999
Q ss_pred CeeecEEEEEecCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCC-CcccchhhhhhcCCCCce
Q psy1415 550 PVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNSPRRQI 615 (622)
Q Consensus 550 P~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p~~~i 615 (622)
|.|||.|.|.+... . ..|.|.|||++.++ +++||++.|++.++. +...++|++|.+.+++.+
T Consensus 83 P~WnE~F~~~~~~~--~-~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~ 145 (158)
T cd04015 83 PVWNESFHIYCAHY--A-SHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPP 145 (158)
T ss_pred CccceEEEEEccCC--C-CEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCC
Confidence 99999999998643 2 35999999999885 689999999997644 566789999998766544
No 118
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.59 E-value=2.1e-14 Score=127.82 Aligned_cols=100 Identities=26% Similarity=0.427 Sum_probs=79.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCC
Q psy1415 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSR 395 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~ 395 (622)
++|.|++|++|+..+ .++.+||||++++ ++..++|+++++++||.|||.|.|.+... ....|.|.|
T Consensus 2 ~~V~v~~a~~L~~~~-~~~~~dPyv~v~~--~~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~~l~v~v-------- 67 (116)
T cd08376 2 VTIVLVEGKNLPPMD-DNGLSDPYVKFRL--GNEKYKSKVCSKTLNPQWLEQFDLHLFDD---QSQILEIEV-------- 67 (116)
T ss_pred EEEEEEEEECCCCCC-CCCCCCcEEEEEE--CCEeEecccccCCCCCceeEEEEEEecCC---CCCEEEEEE--------
Confidence 789999999999998 6889999999999 66789999999999999999999973221 123444554
Q ss_pred CCCCcceEEEEEeccCCCCcceeeEEEEeCCccccCCceeeEEEEee
Q psy1415 396 DDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSF 442 (622)
Q Consensus 396 ~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~l 442 (622)
||++..+++++||++.++++++... ..+..|+.+
T Consensus 68 -----------~d~~~~~~~~~iG~~~~~l~~l~~~--~~~~~w~~L 101 (116)
T cd08376 68 -----------WDKDTGKKDEFIGRCEIDLSALPRE--QTHSLELEL 101 (116)
T ss_pred -----------EECCCCCCCCeEEEEEEeHHHCCCC--CceEEEEEc
Confidence 4998888999999999999998732 234445444
No 119
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.59 E-value=4.5e-15 Score=133.10 Aligned_cols=101 Identities=24% Similarity=0.425 Sum_probs=85.6
Q ss_pred EEEEEEeecCCCCCC-CCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCC
Q psy1415 502 FTIVVLKARNLPKMD-VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV 580 (622)
Q Consensus 502 L~V~I~~A~~L~~~d-~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~ 580 (622)
|+|.|++|+||++++ ..|.+||||++.+ ++. .+.+|+++++++||.|||.|.|.++.. ...|.|.|||++.+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l--~~~--~~~kT~v~~kt~~P~WnE~F~f~v~~~---~~~l~~~v~d~~~~ 74 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNL--DQE--EVFRTKTVEKSLCPFFGEDFYFEIPRT---FRHLSFYIYDRDVL 74 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEE--CCc--cEEEeeEEECCCCCccCCeEEEEcCCC---CCEEEEEEEECCCC
Confidence 679999999999874 4688999999998 332 257899999999999999999999743 24699999999999
Q ss_pred CCCceeEEEEECCCCCC-Ccccchhhhhhc
Q psy1415 581 TKNEVIGRLDLGGDKSS-GTALTHWTDVCN 609 (622)
Q Consensus 581 ~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~ 609 (622)
+++++||.+.++++... +...+.||+|..
T Consensus 75 ~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~ 104 (121)
T cd08401 75 RRDSVIGKVAIKKEDLHKYYGKDTWFPLQP 104 (121)
T ss_pred CCCceEEEEEEEHHHccCCCCcEeeEEEEc
Confidence 99999999999997554 566788999975
No 120
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.59 E-value=1.5e-14 Score=129.75 Aligned_cols=102 Identities=26% Similarity=0.543 Sum_probs=86.6
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy1415 502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 581 (622)
Q Consensus 502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~ 581 (622)
|.|.|++|++|++++..|.+||||++.+ ++.. ..+|+++++++||.|||.|.|.+... ...|.|.|||++.++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~--~~~~--~~kT~v~~~t~nP~Wne~f~~~~~~~---~~~l~v~v~d~~~~~ 74 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKV--DNEV--IIRTATVWKTLNPFWGEEYTVHLPPG---FHTVSFYVLDEDTLS 74 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEE--CCEe--eeeeeeEcCCCCCcccceEEEeeCCC---CCEEEEEEEECCCCC
Confidence 7899999999999999999999999998 3332 46899999999999999999998643 235999999999999
Q ss_pred CCceeEEEEECCCCCCC--cccchhhhhhcC
Q psy1415 582 KNEVIGRLDLGGDKSSG--TALTHWTDVCNS 610 (622)
Q Consensus 582 ~d~~LG~v~i~L~~~~~--~~~~~W~~L~~~ 610 (622)
++++||++.+++..+.. ...++|+.|.+.
T Consensus 75 ~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~ 105 (121)
T cd04054 75 RDDVIGKVSLTREVISAHPRGIDGWMNLTEV 105 (121)
T ss_pred CCCEEEEEEEcHHHhccCCCCCCcEEECeee
Confidence 99999999999865443 346889999753
No 121
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.59 E-value=1.8e-14 Score=131.88 Aligned_cols=94 Identities=31% Similarity=0.486 Sum_probs=79.3
Q ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEee
Q psy1415 311 EKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSF 390 (622)
Q Consensus 311 ~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~ 390 (622)
+..|.|.|+|++|++|+..+ .++.+||||++++ ++..++|++++++.||.|||+|.|. +. ++....|.|.
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d-~~g~~DPYv~v~~--~~~~~kT~vi~~t~nP~Wne~f~f~-v~--~~~~~~l~i~---- 81 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCN-SNGKSDPYCEVSM--GSQEHKTKVVSDTLNPKWNSSMQFF-VK--DLEQDVLCIT---- 81 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCC-CCCCcCcEEEEEE--CCEeeeccccCCCCCCccCceEEEE-ec--CccCCEEEEE----
Confidence 45678999999999999998 7899999999999 6779999999999999999999996 32 2222344444
Q ss_pred ccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 391 DRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 391 d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|||++..+++++||++.+++.++.
T Consensus 82 ---------------V~D~d~~~~d~~lG~~~i~l~~l~ 105 (136)
T cd08375 82 ---------------VFDRDFFSPDDFLGRTEIRVADIL 105 (136)
T ss_pred ---------------EEECCCCCCCCeeEEEEEEHHHhc
Confidence 559998889999999999999987
No 122
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.58 E-value=1.3e-14 Score=130.71 Aligned_cols=106 Identities=25% Similarity=0.400 Sum_probs=87.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCC
Q psy1415 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV 580 (622)
Q Consensus 501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~ 580 (622)
.|+|.|++|++|++++..|.+||||++++. +.. ...+|.++++++||.|||.|.|.+..+. ...|.|+|||++.+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~--~~~-~~~kT~~v~~t~nP~Wne~f~f~~~~~~--~~~L~~~V~d~d~~ 75 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLG--KKK-INDRDNYIPNTLNPVFGKMFELEATLPG--NSILKISVMDYDLL 75 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEEC--Cee-ccceeeEEECCCCCccceEEEEEecCCC--CCEEEEEEEECCCC
Confidence 378999999999999999999999999983 322 3567888899999999999999976433 34699999999999
Q ss_pred CCCceeEEEEECCCCCCCcccchhhhhhcCCCC
Q psy1415 581 TKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRR 613 (622)
Q Consensus 581 ~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~ 613 (622)
+++++||++.++|.+..- ..||+.+.-.|..
T Consensus 76 ~~dd~iG~~~i~l~~~~~--~~~~~~~~~~~~~ 106 (124)
T cd04037 76 GSDDLIGETVIDLEDRFF--SKHRATCGLPPTY 106 (124)
T ss_pred CCCceeEEEEEeeccccc--chHHHhccCCCcc
Confidence 999999999999964432 5677777766653
No 123
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.58 E-value=1.1e-14 Score=132.80 Aligned_cols=107 Identities=26% Similarity=0.388 Sum_probs=88.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeC--CeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcC
Q psy1415 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYK--GQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD 578 (622)
Q Consensus 501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~--~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d 578 (622)
.|+|+|++|++|+.++..|.+||||++++.+. +.....++|.++.+++||.|||.|.|.+... ...|.|+|||++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~ 77 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR---EHRLLFEVFDEN 77 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC---CCEEEEEEEECC
Confidence 37899999999999999999999999999643 2233366899999999999999999998643 235999999999
Q ss_pred CCCCCceeEEEEECCCCCCCc-------ccchhhhhhcC
Q psy1415 579 RVTKNEVIGRLDLGGDKSSGT-------ALTHWTDVCNS 610 (622)
Q Consensus 579 ~~~~d~~LG~v~i~L~~~~~~-------~~~~W~~L~~~ 610 (622)
.++++++||++.+++.+.... ....||.|.+.
T Consensus 78 ~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~ 116 (133)
T cd04033 78 RLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR 116 (133)
T ss_pred CCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeec
Confidence 999999999999998754432 24589999753
No 124
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.58 E-value=5.8e-15 Score=132.41 Aligned_cols=100 Identities=28% Similarity=0.402 Sum_probs=83.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCC
Q psy1415 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV 580 (622)
Q Consensus 501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~ 580 (622)
+|+|.|++|+||+.+ .+||||++.+.+ .+.+|++++++.||.|||.|.|.+.. .....|.|+|||++..
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~-----~~~kT~v~~~t~nP~Wne~F~f~~~~--~~~~~L~~~v~d~d~~ 69 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGN-----YKGSTKAIERTSNPEWNQVFAFSKDR--LQGSTLEVSVWDKDKA 69 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECC-----ccccccccCCCCCCccceEEEEEcCC--CcCCEEEEEEEeCCCC
Confidence 489999999999887 689999999832 26799999999999999999999763 3445699999999987
Q ss_pred CCCceeEEEEECCCCCCC------cccchhhhhhcCCC
Q psy1415 581 TKNEVIGRLDLGGDKSSG------TALTHWTDVCNSPR 612 (622)
Q Consensus 581 ~~d~~LG~v~i~L~~~~~------~~~~~W~~L~~~p~ 612 (622)
++++||++.++|.+... ....+||.|....+
T Consensus 70 -~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~ 106 (121)
T cd08378 70 -KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG 106 (121)
T ss_pred -cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC
Confidence 79999999999985432 23568999998875
No 125
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.58 E-value=1.2e-14 Score=127.56 Aligned_cols=93 Identities=26% Similarity=0.411 Sum_probs=75.1
Q ss_pred CEEEEEEEEeeCCCCCCCC---CCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEee
Q psy1415 314 NVLVVTVIKCRDLFIKDTP---SGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSF 390 (622)
Q Consensus 314 ~~L~V~vi~a~~L~~~d~~---~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~ 390 (622)
|.|.|+|++|++|+..+.. .+.+||||+|++ +++++||+++++++||+|||.|.|. +...+. ...
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~--~~~~~kT~v~~~t~nPvWne~f~f~-v~~~~~-~~~-------- 68 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISF--GRRVFRTSWRRHTLNPVFNERLAFE-VYPHEK-NFD-------- 68 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEE--CCEeEeeeeecCCCCCcccceEEEE-EeCccC-CCE--------
Confidence 5799999999999987621 135899999999 6778999999999999999999996 322211 223
Q ss_pred ccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 391 DRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 391 d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|.|+|||++..++|++||++.++|+++.
T Consensus 69 -----------L~~~V~D~d~~~~dd~IG~~~l~L~~l~ 96 (108)
T cd04039 69 -----------IQFKVLDKDKFSFNDYVATGSLSVQELL 96 (108)
T ss_pred -----------EEEEEEECCCCCCCcceEEEEEEHHHHH
Confidence 4455559999999999999999999997
No 126
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.58 E-value=1.2e-14 Score=128.29 Aligned_cols=90 Identities=33% Similarity=0.427 Sum_probs=76.4
Q ss_pred CccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCC--CCCccEEEEEEE
Q psy1415 498 AANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD--NLDSVSLELLLL 575 (622)
Q Consensus 498 ~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~--~l~~~~L~i~V~ 575 (622)
....|+|.|++|++|+ .|.+||||++++. ++ +++|++++++.||.|||.|.|.+..+ ++.+..|.|+||
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~--~~---~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~ 72 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVG--GQ---KKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVY 72 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEEC--CE---eeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEE
Confidence 3457999999999998 5889999999994 32 56899999999999999999997543 233557999999
Q ss_pred EcCCCCCCceeEEEEECCCCC
Q psy1415 576 DWDRVTKNEVIGRLDLGGDKS 596 (622)
Q Consensus 576 D~d~~~~d~~LG~v~i~L~~~ 596 (622)
|++.++++++||++.++|..+
T Consensus 73 d~~~~~~~~~iG~~~i~l~~v 93 (111)
T cd04011 73 DSRSLRSDTLIGSFKLDVGTV 93 (111)
T ss_pred cCcccccCCccEEEEECCccc
Confidence 999998999999999999744
No 127
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.57 E-value=2.9e-14 Score=128.86 Aligned_cols=88 Identities=27% Similarity=0.495 Sum_probs=72.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCC
Q psy1415 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSR 395 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~ 395 (622)
|.|+|++|+||+. . .+.+||||++++....+.++|+++++++||+|||.|.|. +... ...|.|.||
T Consensus 1 l~v~v~~A~~L~~-~--~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~~~v~------- 66 (126)
T cd08678 1 LLVKNIKANGLSE-A--AGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFE-LSPN---SKELLFEVY------- 66 (126)
T ss_pred CEEEEEEecCCCC-C--CCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEE-eCCC---CCEEEEEEE-------
Confidence 5789999999987 3 689999999999322347999999999999999999997 4322 234555555
Q ss_pred CCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 396 DDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 396 ~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|++..+++++||++.++++++.
T Consensus 67 ------------d~~~~~~~~~lG~~~i~l~~l~ 88 (126)
T cd08678 67 ------------DNGKKSDSKFLGLAIVPFDELR 88 (126)
T ss_pred ------------ECCCCCCCceEEEEEEeHHHhc
Confidence 9988889999999999999987
No 128
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.57 E-value=9e-15 Score=130.67 Aligned_cols=103 Identities=24% Similarity=0.429 Sum_probs=87.5
Q ss_pred cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCC
Q psy1415 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 579 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~ 579 (622)
|.|+|.|++|++|+.++..+.+||||++++. +. +.+|++++++.||.|||+|.|.+.. . ...|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~--~~---~~~T~~~~~t~nP~W~e~f~~~~~~--~-~~~l~~~v~d~~~ 72 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV--NA---RLQTHTIYKTLNPEWNKIFTFPIKD--I-HDVLEVTVYDEDK 72 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC--CE---eeecceecCCcCCccCcEEEEEecC--c-CCEEEEEEEECCC
Confidence 6799999999999999999999999999983 22 4689999999999999999999863 2 2459999999999
Q ss_pred CCCCceeEEEEECCCCCCCcccchhhhhhcCC
Q psy1415 580 VTKNEVIGRLDLGGDKSSGTALTHWTDVCNSP 611 (622)
Q Consensus 580 ~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p 611 (622)
.+++++||++.+++.+.. .+..+||.|....
T Consensus 73 ~~~~~~iG~~~~~l~~~~-~~~~~~~~l~~~~ 103 (119)
T cd08377 73 DKKPEFLGKVAIPLLSIK-NGERKWYALKDKK 103 (119)
T ss_pred CCCCceeeEEEEEHHHCC-CCCceEEECcccC
Confidence 889999999999996553 4457899997653
No 129
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.57 E-value=1.2e-14 Score=131.48 Aligned_cols=112 Identities=26% Similarity=0.411 Sum_probs=90.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCC
Q psy1415 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV 580 (622)
Q Consensus 501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~ 580 (622)
.|+|.|++|++|+..|..|.+||||++++. + .+++|+++.+++||.|||.|.|.+... ...|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~v~~t~~P~Wne~f~f~~~~~---~~~l~i~v~d~d~~ 73 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG--K---TKKRTKTIPQNLNPVWNEKFHFECHNS---SDRIKVRVWDEDDD 73 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEEC--C---EeeecceecCCCCCccceEEEEEecCC---CCEEEEEEEECCCC
Confidence 589999999999999999999999999982 2 256899999999999999999988633 23599999999853
Q ss_pred -----------CCCceeEEEEECCCCCCCcccchhhhhhcCCCC-ceeeEEec
Q psy1415 581 -----------TKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRR-QIAEWLTY 621 (622)
Q Consensus 581 -----------~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~-~i~~w~~l 621 (622)
+++++||.+.+++... .....+||+|....++ .+.++..|
T Consensus 74 ~~~~~~~~~~~~~~~~iG~~~i~l~~~-~~~~~~w~~L~~~~~~~~~~G~i~~ 125 (127)
T cd04027 74 IKSRLKQKFTRESDDFLGQTIIEVRTL-SGEMDVWYNLEKRTDKSAVSGAIRL 125 (127)
T ss_pred cccccceeccccCCCcceEEEEEhHHc-cCCCCeEEECccCCCCCcEeEEEEE
Confidence 5799999999999754 4556899999976654 34555544
No 130
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.57 E-value=2.9e-14 Score=130.13 Aligned_cols=90 Identities=42% Similarity=0.655 Sum_probs=74.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC-----ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEee
Q psy1415 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-----QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSF 390 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~-----~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~ 390 (622)
|.|+|++|++|+.++ ..+.+||||++++.+.. ..++|++++++.||.|||+|.|. +... ...|.|.|
T Consensus 2 L~v~Vi~a~~L~~~d-~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~~~v--- 73 (133)
T cd04033 2 LRVKVLAGIDLAKKD-IFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR-VNPR---EHRLLFEV--- 73 (133)
T ss_pred EEEEEEEeECCCccc-CCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEE-EcCC---CCEEEEEE---
Confidence 789999999999998 68899999999986431 16799999999999999999997 4332 12344444
Q ss_pred ccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 391 DRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 391 d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
||++..+++++||++.++++++.
T Consensus 74 ----------------~d~~~~~~~~~iG~~~i~l~~l~ 96 (133)
T cd04033 74 ----------------FDENRLTRDDFLGQVEVPLNNLP 96 (133)
T ss_pred ----------------EECCCCCCCCeeEEEEEEHHHCC
Confidence 59998889999999999999987
No 131
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.56 E-value=3.5e-14 Score=127.02 Aligned_cols=90 Identities=27% Similarity=0.503 Sum_probs=73.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCC-CceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCC
Q psy1415 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD-KQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYS 394 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~-~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~ 394 (622)
|.|+|++|++|++.+ ..+.+||||++++.+. ..+++|++++++.||+|||+|.|. +.... ...|.|.||
T Consensus 2 L~V~vi~a~~L~~~~-~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~-i~~~~--~~~l~v~v~------ 71 (119)
T cd04036 2 LTVRVLRATNITKGD-LLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFR-IQSQV--KNVLELTVM------ 71 (119)
T ss_pred eEEEEEEeeCCCccC-CCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEE-eCccc--CCEEEEEEE------
Confidence 789999999999988 6889999999998533 248999999999999999999996 43221 223455555
Q ss_pred CCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 395 RDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 395 ~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|++.. ++++||++.++++++.
T Consensus 72 -------------d~d~~-~~~~iG~~~~~l~~l~ 92 (119)
T cd04036 72 -------------DEDYV-MDDHLGTVLFDVSKLK 92 (119)
T ss_pred -------------ECCCC-CCcccEEEEEEHHHCC
Confidence 88888 8999999999999886
No 132
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.56 E-value=4.7e-14 Score=126.57 Aligned_cols=88 Identities=35% Similarity=0.597 Sum_probs=73.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCC
Q psy1415 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYS 394 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~ 394 (622)
|.|.|++|++|..++ .+|.+||||++++ ++. ++||+++++++||.|||.|.|. +... ...|
T Consensus 2 l~v~vi~a~~L~~~d-~~g~~DPYv~v~~--~~~~~~kT~v~~~t~nP~Wne~f~~~-~~~~---~~~l----------- 63 (121)
T cd04054 2 LYIRIVEGKNLPAKD-ITGSSDPYCIVKV--DNEVIIRTATVWKTLNPFWGEEYTVH-LPPG---FHTV----------- 63 (121)
T ss_pred EEEEEEEeeCCcCCC-CCCCCCceEEEEE--CCEeeeeeeeEcCCCCCcccceEEEe-eCCC---CCEE-----------
Confidence 789999999999999 7889999999999 554 6899999999999999999996 3221 1234
Q ss_pred CCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 395 RDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 395 ~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
.++|||++..+++++||++.++++.+.
T Consensus 64 --------~v~v~d~~~~~~d~~iG~~~~~~~~~~ 90 (121)
T cd04054 64 --------SFYVLDEDTLSRDDVIGKVSLTREVIS 90 (121)
T ss_pred --------EEEEEECCCCCCCCEEEEEEEcHHHhc
Confidence 444559999999999999999988776
No 133
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.56 E-value=2.8e-14 Score=130.55 Aligned_cols=103 Identities=27% Similarity=0.449 Sum_probs=81.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCC-----CC--CccEEEEE
Q psy1415 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD-----NL--DSVSLELL 573 (622)
Q Consensus 501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~-----~l--~~~~L~i~ 573 (622)
.|+|.|++|++|+.+|..|.+||||++.+. +. +++|+++++++||.|||.|.|.+... ++ ....|.|+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~--~~---~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~ 76 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFL--NQ---SQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVE 76 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEEC--Ce---eeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEE
Confidence 689999999999999999999999999983 22 66899999999999999999985311 11 12359999
Q ss_pred EEEcCCCCCCceeEEEEEC-CCCC----CCcccchhhhhh
Q psy1415 574 LLDWDRVTKNEVIGRLDLG-GDKS----SGTALTHWTDVC 608 (622)
Q Consensus 574 V~D~d~~~~d~~LG~v~i~-L~~~----~~~~~~~W~~L~ 608 (622)
|||++..++|++||++.+. +... .+.....|++|.
T Consensus 77 V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~ 116 (135)
T cd04017 77 LFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY 116 (135)
T ss_pred EEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEee
Confidence 9999999999999999974 2222 224556677775
No 134
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.56 E-value=1.2e-14 Score=131.48 Aligned_cols=102 Identities=21% Similarity=0.311 Sum_probs=85.4
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy1415 502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 581 (622)
Q Consensus 502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~ 581 (622)
|.|.|++|+||+. ..|.+||||++++... ..+++|+++.+++||.|||.|.|.+... ...|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~~~ 72 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEP---PQKYQSSTQKNTSNPFWDEHFLFELSPN---SKELLFEVYDNGKKS 72 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCC---CcEEEeEEEecCCCCccCceEEEEeCCC---CCEEEEEEEECCCCC
Confidence 5799999999988 6789999999998321 2357999999999999999999998632 345999999999999
Q ss_pred CCceeEEEEECCCCCC-CcccchhhhhhcCC
Q psy1415 582 KNEVIGRLDLGGDKSS-GTALTHWTDVCNSP 611 (622)
Q Consensus 582 ~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p 611 (622)
++++||++.+++..+. .....+|++|...+
T Consensus 73 ~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 103 (126)
T cd08678 73 DSKFLGLAIVPFDELRKNPSGRQIFPLQGRP 103 (126)
T ss_pred CCceEEEEEEeHHHhccCCceeEEEEecCCC
Confidence 9999999999997644 45567899998664
No 135
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.56 E-value=2.1e-14 Score=133.19 Aligned_cols=107 Identities=19% Similarity=0.262 Sum_probs=85.7
Q ss_pred EEEEEeecC--CCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCC------CCCccEEEEEE
Q psy1415 503 TIVVLKARN--LPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD------NLDSVSLELLL 574 (622)
Q Consensus 503 ~V~I~~A~~--L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~------~l~~~~L~i~V 574 (622)
.++|..|++ |++.+..+.+||||++++...+....+.||+++++|+||+|||.|.|.|... .+....|.|+|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 445555555 7888888999999999974333344588999999999999999999999754 24466799999
Q ss_pred EEcCCC-CCCceeEEEEECCCCCC-Ccccchhhhhhc
Q psy1415 575 LDWDRV-TKNEVIGRLDLGGDKSS-GTALTHWTDVCN 609 (622)
Q Consensus 575 ~D~d~~-~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~ 609 (622)
||++.+ ++|++||++.++|.... .....+|++|+.
T Consensus 85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~ 121 (155)
T cd08690 85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD 121 (155)
T ss_pred EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh
Confidence 999886 57999999999998654 346677999984
No 136
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.55 E-value=6.7e-14 Score=126.45 Aligned_cols=105 Identities=32% Similarity=0.454 Sum_probs=87.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCC
Q psy1415 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV 580 (622)
Q Consensus 501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~ 580 (622)
.|+|.|++|++|+.++..|.+||||++.+.+.+ ....+|+++++++||.|||.|.|.+... ....|.|+|||++..
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~--~~~~kT~~~~~t~~P~Wne~f~f~i~~~--~~~~L~i~v~d~d~~ 77 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGK--RRIAKTRTIYDTLNPRWDEEFELEVPAG--EPLWISATVWDRSFV 77 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCC--eeeecccEecCCCCCcccceEEEEcCCC--CCCEEEEEEEECCCC
Confidence 589999999999999999999999999874322 2357999999999999999999998754 234699999999999
Q ss_pred CCCceeEEEEECCCCC---C-Ccccchhhhhhc
Q psy1415 581 TKNEVIGRLDLGGDKS---S-GTALTHWTDVCN 609 (622)
Q Consensus 581 ~~d~~LG~v~i~L~~~---~-~~~~~~W~~L~~ 609 (622)
+++++||++.++|... . +.....|++|..
T Consensus 78 ~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~ 110 (126)
T cd04043 78 GKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT 110 (126)
T ss_pred CCCceEEEEEEecCHHHcCCCCCCceEEEEcCC
Confidence 8999999999999742 1 345678999965
No 137
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.55 E-value=1.5e-14 Score=132.50 Aligned_cols=108 Identities=26% Similarity=0.460 Sum_probs=89.8
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCC-------------CCCcc
Q psy1415 502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD-------------NLDSV 568 (622)
Q Consensus 502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~-------------~l~~~ 568 (622)
|+|.|++|++|+.+ ..|.+||||++++... ....+++|++++++.||.|||.|.|.+... ++...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~-~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~ 78 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYS-SKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS 78 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecC-CcCCeeccceeeCCCCCCcceEEEEEcccccccccccccccccccccc
Confidence 57899999999988 7899999999999642 222367999999999999999999998754 23456
Q ss_pred EEEEEEEEcCCCCCCceeEEEEECCCCCC-CcccchhhhhhcCC
Q psy1415 569 SLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNSP 611 (622)
Q Consensus 569 ~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p 611 (622)
.|.|+|||++..+++++||++.|++.+.. ......||.|....
T Consensus 79 ~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 79 ELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 79999999999989999999999997653 34668899987763
No 138
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.55 E-value=6.5e-14 Score=126.75 Aligned_cols=91 Identities=32% Similarity=0.506 Sum_probs=76.6
Q ss_pred CEEEEEEEEeeCCCCCCCC--CCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeec
Q psy1415 314 NVLVVTVIKCRDLFIKDTP--SGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFD 391 (622)
Q Consensus 314 ~~L~V~vi~a~~L~~~d~~--~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d 391 (622)
|.|.|.|++|++|+..+ . .+.+||||++++ ++.+++|++++++.||.|||.|.|. +.. .....|.|.||
T Consensus 1 g~l~v~v~~a~~L~~~~-~~~~~~~dPyv~v~~--~~~~~kT~~~~~t~~P~Wne~f~~~-~~~--~~~~~l~i~v~--- 71 (128)
T cd04024 1 GVLRVHVVEAKDLAAKD-RSGKGKSDPYAILSV--GAQRFKTQTIPNTLNPKWNYWCEFP-IFS--AQNQLLKLILW--- 71 (128)
T ss_pred CEEEEEEEEeeCCCccc-CCCCCCcCCeEEEEE--CCEEEecceecCCcCCccCCcEEEE-ecC--CCCCEEEEEEE---
Confidence 57899999999999988 6 789999999999 6678999999999999999999996 321 22334555555
Q ss_pred cCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 392 RYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 392 ~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|++..+++++||++.+++.++.
T Consensus 72 ----------------d~~~~~~~~~lG~~~i~l~~~~ 93 (128)
T cd04024 72 ----------------DKDRFAGKDYLGEFDIALEEVF 93 (128)
T ss_pred ----------------ECCCCCCCCcceEEEEEHHHhh
Confidence 9888889999999999999986
No 139
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.55 E-value=4.8e-14 Score=126.44 Aligned_cols=84 Identities=38% Similarity=0.617 Sum_probs=70.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCC
Q psy1415 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSR 395 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~ 395 (622)
|.|.|++|+||+.+ .+||||++++ +++..||++++++.||+|||+|.|. +. .+....|.|.||
T Consensus 2 L~V~Vi~a~~L~~~-----~~Dpyv~v~l--~~~~~kT~v~~~t~nP~Wne~F~f~-~~--~~~~~~L~~~v~------- 64 (121)
T cd08378 2 LYVRVVKARGLPAN-----SNDPVVEVKL--GNYKGSTKAIERTSNPEWNQVFAFS-KD--RLQGSTLEVSVW------- 64 (121)
T ss_pred EEEEEEEecCCCcc-----cCCCEEEEEE--CCccccccccCCCCCCccceEEEEE-cC--CCcCCEEEEEEE-------
Confidence 78999999999765 6899999999 5678999999999999999999996 22 223445666666
Q ss_pred CCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 396 DDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 396 ~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|++.. ++++||++.++++++.
T Consensus 65 ------------d~d~~-~~~~lG~~~i~l~~l~ 85 (121)
T cd08378 65 ------------DKDKA-KDDFLGGVCFDLSEVP 85 (121)
T ss_pred ------------eCCCC-cCceeeeEEEEhHhCc
Confidence 88766 7899999999999987
No 140
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.55 E-value=4.4e-14 Score=123.47 Aligned_cols=87 Identities=24% Similarity=0.406 Sum_probs=73.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCC
Q psy1415 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSR 395 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~ 395 (622)
|.|+|++|++|+..+ ..+.+||||++++ +++.++|++++++.||+|||.|.|.+..+. ...|.|.|+
T Consensus 2 L~V~v~~A~~L~~~~-~~~~~dpyv~v~~--~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~~l~v~v~------- 68 (105)
T cd04050 2 LFVYLDSAKNLPLAK-STKEPSPYVELTV--GKTTQKSKVKERTNNPVWEEGFTFLVRNPE---NQELEIEVK------- 68 (105)
T ss_pred EEEEEeeecCCCCcc-cCCCCCcEEEEEE--CCEEEeCccccCCCCCcccceEEEEeCCCC---CCEEEEEEE-------
Confidence 789999999999988 6889999999999 668999999999999999999999733322 234666665
Q ss_pred CCCCcceEEEEEeccCCCCcceeeEEEEeCCcccc
Q psy1415 396 DDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET 430 (622)
Q Consensus 396 ~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~ 430 (622)
|++. +++||++.++|.++..
T Consensus 69 ------------d~~~---~~~iG~~~i~l~~l~~ 88 (105)
T cd04050 69 ------------DDKT---GKSLGSLTLPLSELLK 88 (105)
T ss_pred ------------ECCC---CCccEEEEEEHHHhhc
Confidence 7765 7899999999999873
No 141
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.54 E-value=4.9e-14 Score=128.48 Aligned_cols=107 Identities=24% Similarity=0.408 Sum_probs=88.9
Q ss_pred ccEEEEEEEeecCCCCCCCC----------CCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCcc
Q psy1415 499 ANRFTIVVLKARNLPKMDVT----------GLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSV 568 (622)
Q Consensus 499 ~g~L~V~I~~A~~L~~~d~~----------g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~ 568 (622)
.|.|+|.|++|++|...+.. |.+||||++.+ ++.. ..+|++++++.||.|||.|.|.+.. ..
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~--~~~~--~~kT~~~~~t~~P~Wne~f~~~v~~----~~ 74 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDV--DDTH--IGKTSTKPKTNSPVWNEEFTTEVHN----GR 74 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEE--CCEE--EeEEeEcCCCCCCCcceeEEEEcCC----CC
Confidence 47899999999999988863 68999999998 4433 4588889999999999999999962 34
Q ss_pred EEEEEEEEcCCCCCCceeEEEEECCCCCC---CcccchhhhhhcCCCCce
Q psy1415 569 SLELLLLDWDRVTKNEVIGRLDLGGDKSS---GTALTHWTDVCNSPRRQI 615 (622)
Q Consensus 569 ~L~i~V~D~d~~~~d~~LG~v~i~L~~~~---~~~~~~W~~L~~~p~~~i 615 (622)
.|.|.|||++.++++++||++.++|.+.. +.....|++|. |.+.+
T Consensus 75 ~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l 122 (132)
T cd04014 75 NLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKL 122 (132)
T ss_pred EEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEE
Confidence 69999999999889999999999997544 35678899997 44555
No 142
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.54 E-value=1.2e-13 Score=124.93 Aligned_cols=87 Identities=25% Similarity=0.473 Sum_probs=69.4
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415 314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR 392 (622)
Q Consensus 314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~ 392 (622)
..|.|.|++|+||+.. +.+||||+|++ ++. ..+|++ +++.||.|||+|.|. +...++ ..+.|.||
T Consensus 4 ~~L~V~Vi~A~~L~~~----~~~DPYv~v~l--~~~~~~kT~v-~~~~nP~WnE~f~f~-~~~~~~--~~l~v~v~---- 69 (126)
T cd08400 4 RSLQLNVLEAHKLPVK----HVPHPYCVISL--NEVKVARTKV-REGPNPVWSEEFVFD-DLPPDV--NSFTISLS---- 69 (126)
T ss_pred eEEEEEEEEeeCCCCC----CCCCeeEEEEE--CCEeEEEeec-CCCCCCccCCEEEEe-cCCCCc--CEEEEEEE----
Confidence 4699999999999865 35899999999 554 678987 568999999999996 332222 23555555
Q ss_pred CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|++..+++++||++.++|+.+.
T Consensus 70 ---------------d~~~~~~d~~iG~v~i~l~~l~ 91 (126)
T cd08400 70 ---------------NKAKRSKDSEIAEVTVQLSKLQ 91 (126)
T ss_pred ---------------ECCCCCCCCeEEEEEEEHhHcc
Confidence 8888889999999999999887
No 143
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.54 E-value=2.7e-14 Score=128.48 Aligned_cols=101 Identities=25% Similarity=0.377 Sum_probs=84.8
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy1415 502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 581 (622)
Q Consensus 502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~ 581 (622)
|+|.|++|++|+.++..|.+||||++++ ++. ..++|+++++++||.|||.|.|.+.. +..|.|+|||++.++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~--~~~--~~~kT~v~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~~~ 73 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITV--DGG--QTHSTDVAKKTLDPKWNEHFDLTVGP----SSIITIQVFDQKKFK 73 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEE--CCc--cceEccEEcCCCCCcccceEEEEeCC----CCEEEEEEEECCCCC
Confidence 7899999999999999999999999998 332 36789999999999999999999964 346999999999887
Q ss_pred C--CceeEEEEECCCCCCC--cccchhhhhhcC
Q psy1415 582 K--NEVIGRLDLGGDKSSG--TALTHWTDVCNS 610 (622)
Q Consensus 582 ~--d~~LG~v~i~L~~~~~--~~~~~W~~L~~~ 610 (622)
+ +++||++.+++.++.. .....|+.|...
T Consensus 74 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~ 106 (123)
T cd08382 74 KKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKL 106 (123)
T ss_pred CCCCceEeEEEEEHHHccccCCCccceeEeecC
Confidence 5 5899999999987543 335779888443
No 144
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.54 E-value=4e-14 Score=127.44 Aligned_cols=91 Identities=27% Similarity=0.349 Sum_probs=77.3
Q ss_pred CCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEE
Q psy1415 497 PAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLD 576 (622)
Q Consensus 497 ~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D 576 (622)
...+.|+|.|++|++|+ .+..|.+||||++++ ++. ++||++++++.||.|||.|.|...... ....|.|+|||
T Consensus 25 ~~~~~L~V~V~~A~~L~-~d~~g~~DPYVkV~~--~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~-~~~~L~v~V~D 97 (127)
T cd04032 25 RGLATLTVTVLRATGLW-GDYFTSTDGYVKVFF--GGQ---EKRTEVIWNNNNPRWNATFDFGSVELS-PGGKLRFEVWD 97 (127)
T ss_pred CCcEEEEEEEEECCCCC-cCcCCCCCeEEEEEE--CCc---cccCceecCCCCCcCCCEEEEecccCC-CCCEEEEEEEe
Confidence 45689999999999998 467789999999998 332 779999999999999999999743211 24469999999
Q ss_pred cCCCCCCceeEEEEECCC
Q psy1415 577 WDRVTKNEVIGRLDLGGD 594 (622)
Q Consensus 577 ~d~~~~d~~LG~v~i~L~ 594 (622)
++.+++|++||++.++|.
T Consensus 98 ~d~~s~dd~IG~~~i~l~ 115 (127)
T cd04032 98 RDNGWDDDLLGTCSVVPE 115 (127)
T ss_pred CCCCCCCCeeEEEEEEec
Confidence 999999999999999986
No 145
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.54 E-value=2.5e-14 Score=128.13 Aligned_cols=102 Identities=24% Similarity=0.339 Sum_probs=85.5
Q ss_pred EEEeecCCCCCCCCCCCCcEEEEEEEeCC--eEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCC---
Q psy1415 505 VVLKARNLPKMDVTGLADPYVKVYLLYKG--QRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR--- 579 (622)
Q Consensus 505 ~I~~A~~L~~~d~~g~sDPyV~v~l~~~~--~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~--- 579 (622)
..++|++|++.+..|.+||||++++.+.. .....++|+++++++||.|||.|.|.+..+.. ..|.|+|||++.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~--~~l~~~V~d~d~~~~ 82 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEV--QKLRFEVYDVDSKSK 82 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEee--eEEEEEEEEecCCcC
Confidence 46899999999999999999999997653 45567899999999999999999998654333 359999999997
Q ss_pred -CCCCceeEEEEECCCCCC-Ccccchhhhhh
Q psy1415 580 -VTKNEVIGRLDLGGDKSS-GTALTHWTDVC 608 (622)
Q Consensus 580 -~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~ 608 (622)
.+++++||++.+++.++. +.....|+.|.
T Consensus 83 ~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 83 DLSDHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCCCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 789999999999998654 35567788883
No 146
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.53 E-value=9.8e-14 Score=123.97 Aligned_cols=90 Identities=31% Similarity=0.512 Sum_probs=75.3
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccC
Q psy1415 314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRY 393 (622)
Q Consensus 314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~ 393 (622)
|.|.|.|++|++|+..+ .++.+||||++++ ++..++|++++++.||.|+|+|.|. +. ++
T Consensus 1 g~l~v~v~~a~~L~~~~-~~~~~dPyv~v~~--~~~~~~T~~~~~t~nP~W~e~f~~~-~~--~~--------------- 59 (119)
T cd08377 1 GFLQVKVIRASGLAAAD-IGGKSDPFCVLEL--VNARLQTHTIYKTLNPEWNKIFTFP-IK--DI--------------- 59 (119)
T ss_pred CEEEEEEEeeeCCCCCC-CCCCCCcEEEEEE--CCEeeecceecCCcCCccCcEEEEE-ec--Cc---------------
Confidence 57899999999999988 7889999999999 5667899999999999999999986 32 11
Q ss_pred CCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 394 SRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 394 ~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
...|.++|||++..+++++||++.+++.++.
T Consensus 60 -----~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~ 90 (119)
T cd08377 60 -----HDVLEVTVYDEDKDKKPEFLGKVAIPLLSIK 90 (119)
T ss_pred -----CCEEEEEEEECCCCCCCceeeEEEEEHHHCC
Confidence 1234455559888889999999999998886
No 147
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.53 E-value=6.9e-14 Score=125.82 Aligned_cols=93 Identities=28% Similarity=0.494 Sum_probs=74.8
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccC
Q psy1415 314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRY 393 (622)
Q Consensus 314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~ 393 (622)
|.|.|+|++|++|+..+...+.+||||++++.++...++|++++++.||.|||.|.|. +.. ....|.|.||
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~-v~~---~~~~l~~~v~----- 72 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYIL-VNS---LTEPLNLTVY----- 72 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEE-eCC---CCCEEEEEEE-----
Confidence 6789999999999975524567999999999321258999999999999999999986 331 1234555555
Q ss_pred CCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 394 SRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 394 ~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|++..+++++||++.+++.++.
T Consensus 73 --------------d~~~~~~d~~iG~~~~~l~~l~ 94 (124)
T cd04044 73 --------------DFNDKRKDKLIGTAEFDLSSLL 94 (124)
T ss_pred --------------ecCCCCCCceeEEEEEEHHHhc
Confidence 9888889999999999999987
No 148
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.53 E-value=5e-14 Score=127.33 Aligned_cols=101 Identities=24% Similarity=0.440 Sum_probs=82.2
Q ss_pred cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCC
Q psy1415 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 579 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~ 579 (622)
..|+|.|++|+||++. +.+||||++.+ ++.. ..+|++ +++.||.|||.|.|.+...... .+.|.|||++.
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l--~~~~--~~kT~v-~~~~nP~WnE~f~f~~~~~~~~--~l~v~v~d~~~ 73 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISL--NEVK--VARTKV-REGPNPVWSEEFVFDDLPPDVN--SFTISLSNKAK 73 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEE--CCEe--EEEeec-CCCCCCccCCEEEEecCCCCcC--EEEEEEEECCC
Confidence 4699999999999874 47899999999 3332 457776 4689999999999987644433 48899999999
Q ss_pred CCCCceeEEEEECCCCCC-CcccchhhhhhcC
Q psy1415 580 VTKNEVIGRLDLGGDKSS-GTALTHWTDVCNS 610 (622)
Q Consensus 580 ~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~ 610 (622)
.+++++||.+.|+|.... +....+||.|.+.
T Consensus 74 ~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~ 105 (126)
T cd08400 74 RSKDSEIAEVTVQLSKLQNGQETDEWYPLSSA 105 (126)
T ss_pred CCCCCeEEEEEEEHhHccCCCcccEeEEcccC
Confidence 999999999999997543 5667889999865
No 149
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.53 E-value=7.5e-14 Score=123.26 Aligned_cols=91 Identities=30% Similarity=0.431 Sum_probs=75.7
Q ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEccc-CcccCCCcEEEEEEEeec
Q psy1415 313 ENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGI-TPHQLKGSTLHFVVFSFD 391 (622)
Q Consensus 313 ~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~-~~~~l~~~~L~~~V~d~d 391 (622)
...|+|.|++|++|. ++.+||||++++ ++++++|++++++.||.|||+|.|.+. ...++.+..|.|.||
T Consensus 3 ~~~l~V~v~~a~~L~-----~~~~dpyv~v~~--~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~--- 72 (111)
T cd04011 3 DFQVRVRVIEARQLV-----GGNIDPVVKVEV--GGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVY--- 72 (111)
T ss_pred cEEEEEEEEEcccCC-----CCCCCCEEEEEE--CCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEE---
Confidence 457899999999997 357999999999 677889999999999999999999632 223444555666666
Q ss_pred cCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 392 RYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 392 ~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|++.++++++||++.++|+++.
T Consensus 73 ----------------d~~~~~~~~~iG~~~i~l~~v~ 94 (111)
T cd04011 73 ----------------DSRSLRSDTLIGSFKLDVGTVY 94 (111)
T ss_pred ----------------cCcccccCCccEEEEECCcccc
Confidence 8888888999999999999996
No 150
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.53 E-value=3.8e-14 Score=127.68 Aligned_cols=108 Identities=23% Similarity=0.357 Sum_probs=89.2
Q ss_pred cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccC-CCCCeeecEEEEEecCCCC-CccEEEEEEEEc
Q psy1415 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR-TLNPVYNESFVFEVPADNL-DSVSLELLLLDW 577 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~-tlnP~wne~f~f~v~~~~l-~~~~L~i~V~D~ 577 (622)
|.|+|.|++|++|+.++..+.+||||++++ .+. .++|++..+ +.||.||+.|.|.+..... ....|.|.|||+
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~--~~~---~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 75 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQC--RTQ---ERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDK 75 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEE--CCE---eeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEEC
Confidence 579999999999999998899999999998 322 457777774 8999999999999986532 234699999999
Q ss_pred CCCCCCceeEEEEECCCCCC-CcccchhhhhhcCCC
Q psy1415 578 DRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNSPR 612 (622)
Q Consensus 578 d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p~ 612 (622)
+.++++++||++.+++.+.. +.....|+.|....-
T Consensus 76 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~~ 111 (124)
T cd04049 76 DNFSDDDFIGEATIHLKGLFEEGVEPGTAELVPAKY 111 (124)
T ss_pred ccCCCCCeEEEEEEEhHHhhhCCCCcCceEeeccce
Confidence 99999999999999998654 456688998877643
No 151
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.53 E-value=5.7e-14 Score=126.45 Aligned_cols=93 Identities=30% Similarity=0.405 Sum_probs=76.0
Q ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeec
Q psy1415 312 KENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFD 391 (622)
Q Consensus 312 ~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d 391 (622)
..+.|.|+|++|++|+. + ..+.+||||+|++ +++++||++++++.||+|||+|.|...... ..
T Consensus 26 ~~~~L~V~V~~A~~L~~-d-~~g~~DPYVkV~~--~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~--~~----------- 88 (127)
T cd04032 26 GLATLTVTVLRATGLWG-D-YFTSTDGYVKVFF--GGQEKRTEVIWNNNNPRWNATFDFGSVELS--PG----------- 88 (127)
T ss_pred CcEEEEEEEEECCCCCc-C-cCCCCCeEEEEEE--CCccccCceecCCCCCcCCCEEEEecccCC--CC-----------
Confidence 45678899999999985 5 5788999999999 667999999999999999999998522221 12
Q ss_pred cCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 392 RYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 392 ~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
..|.|+|||++..++|++||++.++|....
T Consensus 89 --------~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 89 --------GKLRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred --------CEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 335555669999999999999999999876
No 152
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.52 E-value=1.4e-13 Score=123.22 Aligned_cols=91 Identities=35% Similarity=0.564 Sum_probs=73.9
Q ss_pred CEEEEEEEEeeCCCCCCCC-----CCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEE
Q psy1415 314 NVLVVTVIKCRDLFIKDTP-----SGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVF 388 (622)
Q Consensus 314 ~~L~V~vi~a~~L~~~d~~-----~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~ 388 (622)
|.|.|.|++|+||+..+.. .+.+||||++++ ++..++|++++++.||.|+|.|.|. +... ....|.|.||
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~--~~~~~kT~~~~~t~~P~W~e~f~~~-v~~~--~~~~l~i~v~ 75 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRV--GAQTFKSKVIKENLNPKWNEVYEAV-VDEV--PGQELEIELF 75 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEE--CCEeEEccccCCCCCCcccceEEEE-eCCC--CCCEEEEEEE
Confidence 5689999999999988721 368999999999 6689999999999999999999986 3221 1234555554
Q ss_pred eeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 389 SFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 389 d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|++.. ++++||.+.++++++.
T Consensus 76 -------------------d~~~~-~~~~iG~~~i~l~~l~ 96 (121)
T cd08391 76 -------------------DEDPD-KDDFLGRLSIDLGSVE 96 (121)
T ss_pred -------------------ecCCC-CCCcEEEEEEEHHHhc
Confidence 88877 8899999999999987
No 153
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.52 E-value=8.4e-14 Score=129.11 Aligned_cols=93 Identities=30% Similarity=0.508 Sum_probs=74.9
Q ss_pred EEEEEEEEeeCCCCCCCCCC--------------CCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCC
Q psy1415 315 VLVVTVIKCRDLFIKDTPSG--------------SSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKG 380 (622)
Q Consensus 315 ~L~V~vi~a~~L~~~d~~~~--------------~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~ 380 (622)
.|.|+|++|++|+.+| .++ .+||||+|.+ +++..||+++++++||+|||+|.|.+..+. . .
T Consensus 1 ~~~V~V~~A~dLp~~d-~~~~~~~~~~~~~~~~~~~DPYV~V~~--~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~-~-~ 75 (151)
T cd04018 1 RFIFKIYRAEDLPQMD-SGIMANVKKAFLGEKKELVDPYVEVSF--AGQKVKTSVKKNSYNPEWNEQIVFPEMFPP-L-C 75 (151)
T ss_pred CeEEEEEEeCCCCccC-hhhhccceeccccCCCCCcCcEEEEEE--CCEeeecceEcCCCCCCcceEEEEEeeCCC-c-C
Confidence 3789999999999987 343 6899999999 677889999999999999999999632221 1 1
Q ss_pred cEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccC
Q psy1415 381 STLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETY 431 (622)
Q Consensus 381 ~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~ 431 (622)
..|. |+|||+|..+++++||++.+++.++...
T Consensus 76 ~~l~-------------------~~v~D~d~~~~dd~iG~~~l~l~~l~~~ 107 (151)
T cd04018 76 ERIK-------------------IQIRDWDRVGNDDVIGTHFIDLSKISNS 107 (151)
T ss_pred CEEE-------------------EEEEECCCCCCCCEEEEEEEeHHHhccC
Confidence 2344 4455999989999999999999988743
No 154
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.51 E-value=3.2e-13 Score=121.95 Aligned_cols=106 Identities=20% Similarity=0.323 Sum_probs=80.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCC-CceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccC
Q psy1415 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD-KQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRY 393 (622)
Q Consensus 315 ~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~-~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~ 393 (622)
.|.|+|++|++|+..+ .++.+||||++++.++ ...+||++++++.||.|||+|.|. +... ....|.|.||
T Consensus 2 ~~~V~v~~a~~L~~~~-~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~-i~~~--~~~~L~i~v~----- 72 (126)
T cd04043 2 LFTIRIVRAENLKADS-SNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELE-VPAG--EPLWISATVW----- 72 (126)
T ss_pred EEEEEEEEeECCCCCC-CCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEE-cCCC--CCCEEEEEEE-----
Confidence 6889999999999998 6889999999998433 237899999999999999999997 3322 1234555555
Q ss_pred CCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccCC-ceeeEEEEeec
Q psy1415 394 SRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYG-STLHFVVFSFD 443 (622)
Q Consensus 394 ~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~~-~~~~~~~~~l~ 443 (622)
|++..+++++||++.++|..+.... +..+..|..+.
T Consensus 73 --------------d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~ 109 (126)
T cd04043 73 --------------DRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD 109 (126)
T ss_pred --------------ECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC
Confidence 8888888999999999998765322 33344455543
No 155
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.51 E-value=2e-13 Score=122.79 Aligned_cols=88 Identities=25% Similarity=0.390 Sum_probs=73.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCC
Q psy1415 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSR 395 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~ 395 (622)
|.|+|++|++|..++ .++.+||||++++. +.++++|+++++++||.|||.|.|. +.. ...|.|.||
T Consensus 2 l~v~v~~A~~L~~~~-~~~~~dpyv~v~~~-~~~~~kT~v~~~t~nP~Wne~f~~~-~~~----~~~l~i~V~------- 67 (123)
T cd08382 2 VRLTVLCADGLAKRD-LFRLPDPFAVITVD-GGQTHSTDVAKKTLDPKWNEHFDLT-VGP----SSIITIQVF------- 67 (123)
T ss_pred eEEEEEEecCCCccC-CCCCCCcEEEEEEC-CccceEccEEcCCCCCcccceEEEE-eCC----CCEEEEEEE-------
Confidence 789999999999998 78999999999992 2458999999999999999999997 332 234555555
Q ss_pred CCCCcceEEEEEeccCCCC--cceeeEEEEeCCccc
Q psy1415 396 DDIGSTLHFVVFSFDRYSR--DDIVGEVFYSLQSFE 429 (622)
Q Consensus 396 ~d~~~~l~i~v~d~d~~~~--d~~iG~~~i~l~~l~ 429 (622)
|++..++ +++||++.++++++.
T Consensus 68 ------------d~~~~~~~~d~~lG~~~i~l~~l~ 91 (123)
T cd08382 68 ------------DQKKFKKKDQGFLGCVRIRANAVL 91 (123)
T ss_pred ------------ECCCCCCCCCceEeEEEEEHHHcc
Confidence 8887765 589999999999987
No 156
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.51 E-value=1.3e-13 Score=122.62 Aligned_cols=88 Identities=23% Similarity=0.360 Sum_probs=69.8
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccC
Q psy1415 314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRY 393 (622)
Q Consensus 314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~ 393 (622)
+.|.|.|++|++|...+ ..||||+|.+ ++++.+|+++++ .||.|||.|.|. +. +
T Consensus 2 ~~L~V~Vv~Ar~L~~~~----~~dPYV~Ik~--g~~k~kT~v~~~-~nP~WnE~F~F~-~~--~---------------- 55 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD----KFNTYVTLKV--QNVKSTTIAVRG-SQPCWEQDFMFE-IN--R---------------- 55 (127)
T ss_pred ceEEEEEEEeeCCCCCC----CCCCeEEEEE--CCEEeEeeECCC-CCCceeeEEEEE-Ec--C----------------
Confidence 57999999999997654 3589999999 778899999887 599999999997 22 1
Q ss_pred CCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccCC
Q psy1415 394 SRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYG 432 (622)
Q Consensus 394 ~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~~ 432 (622)
.+..|.++|||.+.+ .|++||++.++|+++...+
T Consensus 56 ----~~~~L~v~V~dkd~~-~DD~lG~v~i~L~~v~~~~ 89 (127)
T cd08394 56 ----LDLGLVIELWNKGLI-WDTLVGTVWIPLSTIRQSN 89 (127)
T ss_pred ----CCCEEEEEEEeCCCc-CCCceEEEEEEhHHcccCC
Confidence 122245555597754 8999999999999998443
No 157
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.50 E-value=9.2e-14 Score=123.56 Aligned_cols=96 Identities=19% Similarity=0.281 Sum_probs=77.5
Q ss_pred cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCC
Q psy1415 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 579 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~ 579 (622)
+.|.|.|++|++|+..+ ..||||++.+ ++ .+.+|++.++ .||.|||.|.|.+.. ... .|.|.|||++.
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~--g~---~k~kT~v~~~-~nP~WnE~F~F~~~~--~~~-~L~v~V~dkd~ 69 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKV--QN---VKSTTIAVRG-SQPCWEQDFMFEINR--LDL-GLVIELWNKGL 69 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEE--CC---EEeEeeECCC-CCCceeeEEEEEEcC--CCC-EEEEEEEeCCC
Confidence 57999999999997544 4699999999 33 2678888887 599999999999863 333 39999999986
Q ss_pred CCCCceeEEEEECCCCCCC---cccchhhhhh
Q psy1415 580 VTKNEVIGRLDLGGDKSSG---TALTHWTDVC 608 (622)
Q Consensus 580 ~~~d~~LG~v~i~L~~~~~---~~~~~W~~L~ 608 (622)
+ .|++||++.|+|.++.. ....+||+|.
T Consensus 70 ~-~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 70 I-WDTLVGTVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred c-CCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence 6 89999999999986442 3337899987
No 158
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.50 E-value=9e-14 Score=125.68 Aligned_cols=100 Identities=22% Similarity=0.333 Sum_probs=84.3
Q ss_pred ccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcC
Q psy1415 499 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD 578 (622)
Q Consensus 499 ~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d 578 (622)
...|+|.|++|++|...+..|.+||||++.+ ++. +.+|++++++.||.|||.|.|.+... ...|.|+|||++
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~--~~~---~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~i~V~d~~ 73 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKC--EGE---SVRSPVQKDTLSPEFDTQAIFYRKKP---RSPIKIQVWNSN 73 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEE--CCE---EEEeCccCCCCCCcccceEEEEecCC---CCEEEEEEEECC
Confidence 3579999999999999999999999999988 333 56899999999999999999987633 446999999998
Q ss_pred CCCCCceeEEEEECCCCCCCcccchhhhhh
Q psy1415 579 RVTKNEVIGRLDLGGDKSSGTALTHWTDVC 608 (622)
Q Consensus 579 ~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~ 608 (622)
..+ |++||++.+++... .....+|+.|.
T Consensus 74 ~~~-d~~lG~~~~~l~~~-~~~~~~~~~l~ 101 (126)
T cd04046 74 LLC-DEFLGQATLSADPN-DSQTLRTLPLR 101 (126)
T ss_pred CCC-CCceEEEEEecccC-CCcCceEEEcc
Confidence 874 89999999999653 45556788885
No 159
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.50 E-value=8.7e-14 Score=122.57 Aligned_cols=92 Identities=25% Similarity=0.415 Sum_probs=75.9
Q ss_pred EEEEEeecCCCCCCCCCCCCcEEEEEEEeCC-eEeeEeeeeeccCCCCCeeecEEEEEecCCCCC----ccEEEEEEEEc
Q psy1415 503 TIVVLKARNLPKMDVTGLADPYVKVYLLYKG-QRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD----SVSLELLLLDW 577 (622)
Q Consensus 503 ~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~-~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~----~~~L~i~V~D~ 577 (622)
.+..++|++|+.++..|.+||||++++.+.. .....++|+++++++||.|| .|.|++. .++ ...|.|+|||+
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~--~l~~~~~~~~l~~~V~d~ 79 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQ--KLCNGDYDRPIKIEVYDY 79 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHH--HhcCCCcCCEEEEEEEEe
Confidence 3557799999999999999999999986543 44457899999999999999 6777653 221 34699999999
Q ss_pred CCCCCCceeEEEEECCCCCC
Q psy1415 578 DRVTKNEVIGRLDLGGDKSS 597 (622)
Q Consensus 578 d~~~~d~~LG~v~i~L~~~~ 597 (622)
+..++|++||++.+++.++.
T Consensus 80 d~~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 80 DSSGKHDLIGEFETTLDELL 99 (110)
T ss_pred CCCCCCcEEEEEEEEHHHHh
Confidence 99999999999999997544
No 160
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.50 E-value=2.8e-13 Score=123.97 Aligned_cols=90 Identities=23% Similarity=0.438 Sum_probs=72.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCc----ccCCCcEEEEEEEee
Q psy1415 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITP----HQLKGSTLHFVVFSF 390 (622)
Q Consensus 315 ~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~----~~l~~~~L~~~V~d~ 390 (622)
+|+|.|++|++|+.+| .++.+||||++++ ++..++|++++++.||.|||.|.|.+... .++.
T Consensus 2 ~l~v~V~~a~~L~~~d-~~g~~dpyv~v~~--~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~----------- 67 (135)
T cd04017 2 QLRAYIYQARDLLAAD-KSGLSDPFARVSF--LNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIA----------- 67 (135)
T ss_pred EEEEEEEEeecCcCCC-CCCCCCCEEEEEE--CCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhh-----------
Confidence 6899999999999998 7899999999999 66799999999999999999999863221 1110
Q ss_pred ccCCCCCCCcceEEEEEeccCCCCcceeeEEEEe
Q psy1415 391 DRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYS 424 (622)
Q Consensus 391 d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~ 424 (622)
+....|.++|||++..++|++||++.+.
T Consensus 68 ------~~~~~l~v~V~d~d~~~~d~~iG~~~i~ 95 (135)
T cd04017 68 ------QNPPLVVVELFDQDSVGKDEFLGRSVAK 95 (135)
T ss_pred ------cCCCEEEEEEEeCcCCCCCccceEEEee
Confidence 0112355666699999999999999873
No 161
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.50 E-value=2.9e-13 Score=122.48 Aligned_cols=85 Identities=29% Similarity=0.428 Sum_probs=69.4
Q ss_pred EEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCCCCCC
Q psy1415 320 VIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIG 399 (622)
Q Consensus 320 vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~ 399 (622)
|++|++|+. ..+.+||||+|++ ++..++|++++++.||+|||.|.|.+.... .....|.|.||
T Consensus 2 vi~a~~L~~---~~g~~Dpyv~v~~--~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~-~~~~~l~~~v~----------- 64 (127)
T cd08373 2 VVSLKNLPG---LKGKGDRIAKVTF--RGVKKKTRVLENELNPVWNETFEWPLAGSP-DPDESLEIVVK----------- 64 (127)
T ss_pred eEEeeCCcc---cCCCCCCEEEEEE--CCEeeecceeCCCcCCcccceEEEEeCCCc-CCCCEEEEEEE-----------
Confidence 789999988 2678999999999 667899999999999999999999732211 22334555555
Q ss_pred cceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 400 STLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 400 ~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|++..+++++||++.++++++.
T Consensus 65 --------d~~~~~~d~~iG~~~~~l~~l~ 86 (127)
T cd08373 65 --------DYEKVGRNRLIGSATVSLQDLV 86 (127)
T ss_pred --------ECCCCCCCceEEEEEEEhhHcc
Confidence 9988889999999999999987
No 162
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.49 E-value=1.9e-13 Score=126.10 Aligned_cols=89 Identities=42% Similarity=0.647 Sum_probs=76.2
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccC
Q psy1415 314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRY 393 (622)
Q Consensus 314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~ 393 (622)
|.|.|.|++|+||+..+ . +.+||||++++ +++.++|++++++.||+|||.|.|.+..+
T Consensus 2 G~L~V~Vi~a~nL~~~d-~-~~sDPYV~v~~--g~~~~kT~vvk~t~nP~WnE~f~f~i~~~------------------ 59 (145)
T cd04038 2 GLLKVRVVRGTNLAVRD-F-TSSDPYVVLTL--GNQKVKTRVIKKNLNPVWNEELTLSVPNP------------------ 59 (145)
T ss_pred eEEEEEEEeeECCCCCC-C-CCcCcEEEEEE--CCEEEEeeeEcCCCCCeecccEEEEecCC------------------
Confidence 67999999999999988 5 78999999999 77899999999999999999999973221
Q ss_pred CCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 394 SRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 394 ~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
..+|.|+|||++.+++|++||++.+++..+.
T Consensus 60 -----~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~ 90 (145)
T cd04038 60 -----MAPLKLEVFDKDTFSKDDSMGEAEIDLEPLV 90 (145)
T ss_pred -----CCEEEEEEEECCCCCCCCEEEEEEEEHHHhh
Confidence 2334555559999999999999999999987
No 163
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.49 E-value=5.5e-14 Score=126.82 Aligned_cols=108 Identities=18% Similarity=0.229 Sum_probs=87.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeecc-CCCCCeeecEEEEEecCCCC--CccEEEEEEEEc
Q psy1415 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK-RTLNPVYNESFVFEVPADNL--DSVSLELLLLDW 577 (622)
Q Consensus 501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~-~tlnP~wne~f~f~v~~~~l--~~~~L~i~V~D~ 577 (622)
.|+|.|++|++|+..+..+.+||||++++.+ ..+++|++.. ++.||.|||.|.|.+....+ ....|.|+|||+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~----~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~ 76 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP----SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCE 76 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC----CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEEC
Confidence 3789999999999999899999999999943 1256888875 58999999999999976532 245699999999
Q ss_pred CCCCCCceeEEEEECCCCCCCcc------cchhhhhhcCCC
Q psy1415 578 DRVTKNEVIGRLDLGGDKSSGTA------LTHWTDVCNSPR 612 (622)
Q Consensus 578 d~~~~d~~LG~v~i~L~~~~~~~------~~~W~~L~~~p~ 612 (622)
+.++++++||++.|+|.++.... ...||+|....|
T Consensus 77 ~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g 117 (125)
T cd04051 77 RPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG 117 (125)
T ss_pred CCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC
Confidence 99889999999999998655322 367999997543
No 164
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.49 E-value=3.5e-13 Score=121.96 Aligned_cols=89 Identities=29% Similarity=0.570 Sum_probs=72.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCC
Q psy1415 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYS 394 (622)
Q Consensus 315 ~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~ 394 (622)
.|.|.|++|++|+..| .++.+||||++++ ++..++|+++++++||.|||.|.|.+... ...|.|.||
T Consensus 2 ~L~V~vi~a~~L~~~d-~~g~~DPyv~v~~--~~~~~kT~~v~~t~~P~Wne~f~f~~~~~----~~~l~i~v~------ 68 (127)
T cd04027 2 KISITVVCAQGLIAKD-KTGTSDPYVTVQV--GKTKKRTKTIPQNLNPVWNEKFHFECHNS----SDRIKVRVW------ 68 (127)
T ss_pred eEEEEEEECcCCcCCC-CCCCcCcEEEEEE--CCEeeecceecCCCCCccceEEEEEecCC----CCEEEEEEE------
Confidence 6899999999999998 6889999999999 66789999999999999999999862221 234556666
Q ss_pred CCCCCcceEEEEEeccCC-----------CCcceeeEEEEeCCccc
Q psy1415 395 RDDIGSTLHFVVFSFDRY-----------SRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 395 ~~d~~~~l~i~v~d~d~~-----------~~d~~iG~~~i~l~~l~ 429 (622)
|++.. +.+++||++.+++.++.
T Consensus 69 -------------d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~ 101 (127)
T cd04027 69 -------------DEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS 101 (127)
T ss_pred -------------ECCCCcccccceeccccCCCcceEEEEEhHHcc
Confidence 65532 46899999999998774
No 165
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.48 E-value=1.7e-13 Score=120.21 Aligned_cols=84 Identities=26% Similarity=0.358 Sum_probs=70.8
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEc----
Q psy1415 502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDW---- 577 (622)
Q Consensus 502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~---- 577 (622)
|.|.|.+|+||+ |.+||||++++.+.+....+.||+++++|+||+|||.|.|.+.. ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~----s~~L~~~v~d~~~~~ 71 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG----SQTLRILCYEKCYSK 71 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC----CCEEEEEEEEccccc
Confidence 579999999995 56899999998654433357899999999999999999999863 33699999998
Q ss_pred ---CCCCCCceeEEEEECCC
Q psy1415 578 ---DRVTKNEVIGRLDLGGD 594 (622)
Q Consensus 578 ---d~~~~d~~LG~v~i~L~ 594 (622)
|..++|+++|+..|.|+
T Consensus 72 ~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 72 VKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred ccccccCcccEEEEEEEEEC
Confidence 46689999999888885
No 166
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.48 E-value=1.4e-13 Score=124.56 Aligned_cols=102 Identities=31% Similarity=0.474 Sum_probs=84.9
Q ss_pred EEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCCCCce
Q psy1415 506 VLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEV 585 (622)
Q Consensus 506 I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~ 585 (622)
|++|++|+. ..|.+||||++++ ++. +++|++++++.||.|||.|.|.+.........|.|+|||++..+++++
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~--~~~---~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~ 74 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTF--RGV---KKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRL 74 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEE--CCE---eeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCce
Confidence 789999988 6789999999998 332 568999999999999999999997543345569999999999999999
Q ss_pred eEEEEECCCCCCC-cccchhhhhhcCCCCc
Q psy1415 586 IGRLDLGGDKSSG-TALTHWTDVCNSPRRQ 614 (622)
Q Consensus 586 LG~v~i~L~~~~~-~~~~~W~~L~~~p~~~ 614 (622)
||++.+++.++.. .....|+.|.+..+..
T Consensus 75 iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~ 104 (127)
T cd08373 75 IGSATVSLQDLVSEGLLEVTEPLLDSNGRP 104 (127)
T ss_pred EEEEEEEhhHcccCCceEEEEeCcCCCCCc
Confidence 9999999986554 5567899998665543
No 167
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.48 E-value=8.1e-13 Score=119.43 Aligned_cols=90 Identities=22% Similarity=0.355 Sum_probs=73.7
Q ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415 313 ENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR 392 (622)
Q Consensus 313 ~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~ 392 (622)
...|.|+|++|++|...+ .+|.+||||++++ +++.++|++++++.||+|||.|.|. ...
T Consensus 2 ~~~~~V~v~~A~~L~~~d-~~g~~dPyv~v~~--~~~~~kT~v~~~t~nP~Wne~f~f~-~~~----------------- 60 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQD-SGGGADPYVIIKC--EGESVRSPVQKDTLSPEFDTQAIFY-RKK----------------- 60 (126)
T ss_pred cEEEEEEEEeCcCCCCCC-CCCCcCccEEEEE--CCEEEEeCccCCCCCCcccceEEEE-ecC-----------------
Confidence 357899999999999988 7899999999998 6778999999999999999999885 221
Q ss_pred CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
....|.++|||++.. ++++||++.++++.+.
T Consensus 61 -----~~~~l~i~V~d~~~~-~d~~lG~~~~~l~~~~ 91 (126)
T cd04046 61 -----PRSPIKIQVWNSNLL-CDEFLGQATLSADPND 91 (126)
T ss_pred -----CCCEEEEEEEECCCC-CCCceEEEEEecccCC
Confidence 123345555588776 4899999999998754
No 168
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.47 E-value=7.4e-13 Score=120.68 Aligned_cols=91 Identities=31% Similarity=0.429 Sum_probs=75.4
Q ss_pred CCEEEEEEEEeeCCCCCCCC----------CCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCc
Q psy1415 313 ENVLVVTVIKCRDLFIKDTP----------SGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGS 381 (622)
Q Consensus 313 ~~~L~V~vi~a~~L~~~d~~----------~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~ 381 (622)
.|.|.|.|++|++|...+ . .+.+||||++++ +++ ..+|++++++.||.|||+|.|. +. ...
T Consensus 3 ~g~l~V~v~~a~~L~~~d-~~~~~~~~~~~~g~~dpyv~v~~--~~~~~~kT~~~~~t~~P~Wne~f~~~-v~----~~~ 74 (132)
T cd04014 3 TGTLKIKICEAVDLKPTD-WSTRHAVPKKGSQLLDPYVSIDV--DDTHIGKTSTKPKTNSPVWNEEFTTE-VH----NGR 74 (132)
T ss_pred ceEEEEEEEEecCCCCCC-chhhhcccccCccCcCcEEEEEE--CCEEEeEEeEcCCCCCCCcceeEEEE-cC----CCC
Confidence 467999999999999887 3 257999999999 554 6799999999999999999997 43 123
Q ss_pred EEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcccc
Q psy1415 382 TLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET 430 (622)
Q Consensus 382 ~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~ 430 (622)
.|.|.|| |++..+++++||++.++|+++..
T Consensus 75 ~l~~~v~-------------------d~~~~~~~~~iG~~~i~l~~l~~ 104 (132)
T cd04014 75 NLELTVF-------------------HDAAIGPDDFVANCTISFEDLIQ 104 (132)
T ss_pred EEEEEEE-------------------eCCCCCCCceEEEEEEEhHHhcc
Confidence 5556655 88888889999999999999873
No 169
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.47 E-value=2e-13 Score=121.22 Aligned_cols=105 Identities=34% Similarity=0.524 Sum_probs=87.9
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy1415 502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 581 (622)
Q Consensus 502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~ 581 (622)
|+|.|++|++|+..+..|.+||||++.+ .+. ..++|+++.++.||.||+.|.|.+... .+..|.|+|||++..+
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~--~~~--~~~~T~v~~~~~~P~Wne~f~~~~~~~--~~~~l~~~v~d~~~~~ 74 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYL--NGE--KVFKTKTIKKTLNPVWNESFEVPVPSR--VRAVLKVEVYDWDRGG 74 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEE--CCC--cceeeceecCCCCCcccccEEEEeccC--CCCEEEEEEEeCCCCC
Confidence 5789999999999998899999999998 332 257899999999999999999998743 3446999999999999
Q ss_pred CCceeEEEEECCCCCC-CcccchhhhhhcCCC
Q psy1415 582 KNEVIGRLDLGGDKSS-GTALTHWTDVCNSPR 612 (622)
Q Consensus 582 ~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p~ 612 (622)
++++||++.+++.+.. +.....|.+|....+
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~ 106 (115)
T cd04040 75 KDDLLGSAYIDLSDLEPEETTELTLPLDGQGG 106 (115)
T ss_pred CCCceEEEEEEHHHcCCCCcEEEEEECcCCCC
Confidence 9999999999997644 456788988876544
No 170
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.46 E-value=3.4e-13 Score=118.80 Aligned_cols=94 Identities=24% Similarity=0.440 Sum_probs=75.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC----ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeec
Q psy1415 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK----QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFD 391 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~----~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d 391 (622)
+.+..++|++|+..| .++.+||||++++.+++ ..++|+++++++||+|+ .|.|. ..+++.
T Consensus 2 ~~~~~i~a~~L~~~d-~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~---~~~l~~----------- 65 (110)
T cd04047 2 VVELQFSGKKLDKKD-FFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIP---LQKLCN----------- 65 (110)
T ss_pred EEEEEEEeCCCCCCC-CCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEE---HHHhcC-----------
Confidence 345678999999999 78899999999986543 27999999999999999 56664 223322
Q ss_pred cCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 392 RYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 392 ~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
++....|.|+|||++..++|++||++.++++++.
T Consensus 66 ----~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 66 ----GDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELL 99 (110)
T ss_pred ----CCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHh
Confidence 3334567777779999999999999999999986
No 171
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.46 E-value=6.8e-13 Score=121.14 Aligned_cols=105 Identities=24% Similarity=0.289 Sum_probs=82.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeE--------eeEeeeeeccCCCCCee-ecEEEEEecCCCCCccEEE
Q psy1415 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQR--------VAKKKTHVKKRTLNPVY-NESFVFEVPADNLDSVSLE 571 (622)
Q Consensus 501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~--------~~~~kT~~~~~tlnP~w-ne~f~f~v~~~~l~~~~L~ 571 (622)
.+.|.+++|+||+ .+..|.+||||++++.+++.. ..+++|.++++++||.| ||.|.|.+... ..|.
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~----~~L~ 76 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPT----DVLE 76 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCC----CEEE
Confidence 3678999999998 777899999999999754433 23789999999999999 99999998633 2599
Q ss_pred EEEEEcCCCCC---CceeEEEEECCCCCCCc----ccchhhhhhcC
Q psy1415 572 LLLLDWDRVTK---NEVIGRLDLGGDKSSGT----ALTHWTDVCNS 610 (622)
Q Consensus 572 i~V~D~d~~~~---d~~LG~v~i~L~~~~~~----~~~~W~~L~~~ 610 (622)
|+|||++..++ +++||++.|++..+... ....||.|-..
T Consensus 77 v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~ 122 (137)
T cd08691 77 IEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR 122 (137)
T ss_pred EEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcC
Confidence 99999875443 79999999999865422 24557766544
No 172
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.46 E-value=3.6e-13 Score=121.14 Aligned_cols=93 Identities=29% Similarity=0.435 Sum_probs=78.8
Q ss_pred cEEEEEEEeecCCCCCC-CCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcC
Q psy1415 500 NRFTIVVLKARNLPKMD-VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD 578 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~d-~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d 578 (622)
|.|+|.|++|++|+..+ ..+.+||||++.+.+. ...++|+++.++.||.|||.|.|.+.. . +..|.|+|||++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~---~~~~kT~~~~~~~~P~Wne~~~~~v~~--~-~~~l~~~v~d~~ 75 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR---RELARTKVKKDTSNPVWNETKYILVNS--L-TEPLNLTVYDFN 75 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC---CcceEeeeecCCCCCcceEEEEEEeCC--C-CCEEEEEEEecC
Confidence 68999999999999766 4567999999999432 236799999999999999999999872 2 346999999999
Q ss_pred CCCCCceeEEEEECCCCCCC
Q psy1415 579 RVTKNEVIGRLDLGGDKSSG 598 (622)
Q Consensus 579 ~~~~d~~LG~v~i~L~~~~~ 598 (622)
..+++++||.+.++|.+...
T Consensus 76 ~~~~d~~iG~~~~~l~~l~~ 95 (124)
T cd04044 76 DKRKDKLIGTAEFDLSSLLQ 95 (124)
T ss_pred CCCCCceeEEEEEEHHHhcc
Confidence 99899999999999986554
No 173
>KOG1326|consensus
Probab=99.46 E-value=1.7e-13 Score=152.52 Aligned_cols=384 Identities=15% Similarity=0.105 Sum_probs=210.6
Q ss_pred ccceeccccCCcccCCCCCCCCCccceeeecCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCccc------CCCeEE
Q psy1415 173 LALSQMTLKRPTAVRSPAAAGPNSHYLKKSPSPTYATPVASLVNSPTGSTNSNNGAGSNSHSPIQPCV------ALPGTV 246 (622)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~dp~~~~vk~~~~p~~~~~~kT~v~~~t~nP~~~E~~~f~~~~~~~~~~------~~L~~~ 246 (622)
+.+.+-.++.+.|.+..+-+|| |..+... .+...|.++..|+||.||++..|..++...+.. ..+.|+
T Consensus 208 lR~yiyQar~L~a~dk~~~sdp---~a~v~f~---~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e 281 (1105)
T KOG1326|consen 208 LRSYIYQARALGAPDKDDESDP---DAAVEFC---GQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFE 281 (1105)
T ss_pred hHHHHHHHHhhcCCCcccCCCc---hhhhhcc---cccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEE
Confidence 4455667999999999999999 9998864 455689999999999999999998877665433 234599
Q ss_pred EEeccccCCCcceeeeccCCCCCCCCCC----------CCCCC--ccccccccccccCCCCCCCcceEEEEEEEEECC--
Q psy1415 247 VITENEKAAPLVLGVAGPTTAGNGPAAN----------GTDSD--DSCALVNKETVDCDGNAEGKLGQIFFKIKYQEK-- 312 (622)
Q Consensus 247 V~d~d~~~~dd~lG~~~~~l~~l~~~~~----------~~~~~--~~~~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~-- 312 (622)
|||.|+...++|+|...+...-....+. ..+.+ ++...++.... ..... ..-++.+. -.|.
T Consensus 282 ~yd~dr~g~~ef~gr~~~~p~V~~~~p~lkw~p~~rg~~l~gd~l~a~eliq~~~~--i~~p~-~~~~~~~~--~vp~~i 356 (1105)
T KOG1326|consen 282 VYDLDRSGINEFKGRKKQRPYVMVQCPALKWVPTMRGAFLDGDVLIAAELIQIGKP--IPQPP-PQREIIFS--LVPKKI 356 (1105)
T ss_pred eehhhhhchHHhhcccccceEEEecCCccceEEeecccccccchhHHHHHHhhcCC--CCCCC-ccccccee--ccccCC
Confidence 9999999999999955533222221010 00111 11101111110 00000 00011111 1111
Q ss_pred -----CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeee-cCCCCCeeeceeEEcc--cCcccCCCcEEE
Q psy1415 313 -----ENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVL-RKTRNPIYNEEFTFTG--ITPHQLKGSTLH 384 (622)
Q Consensus 313 -----~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi-~~t~nP~W~e~f~f~~--~~~~~l~~~~L~ 384 (622)
.+.+.|....-+|+.... ......|-+-+.+ +++..++..| ....||.+...|.+.. ...+++.-..+.
T Consensus 357 Rp~~q~~~~evl~wgLrn~k~~~-m~~~~~P~~~~e~--g~e~v~s~~I~~~k~npnf~s~~~~~~v~lpd~e~Y~ppl~ 433 (1105)
T KOG1326|consen 357 RPKTQIGKAELLMWGLRNPKKSG-MASTFSPALLVEF--GGERVSSFSIFNRKKNPNFPSRVLGRLVILPDEELYMPPLN 433 (1105)
T ss_pred Ccceeeeeeehhhhhhccccccc-ccccCCcceeEee--CCceEeeeeehhhhhCCCCceeEEEEEEeccchHhhCccce
Confidence 122333333445554443 4455677777777 7775555555 3455777776665422 222344444566
Q ss_pred EEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeC-CccccCCce---ee-----------------------E
Q psy1415 385 FVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSL-QSFETYGST---LH-----------------------F 437 (622)
Q Consensus 385 ~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l-~~l~~~~~~---~~-----------------------~ 437 (622)
+.|. |.+.+++....|+|.+.- .....+... .+ .
T Consensus 434 akvv-------------------d~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~~~~~ 494 (1105)
T KOG1326|consen 434 AKVV-------------------DLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIRHCNS 494 (1105)
T ss_pred eEEE-------------------ecccccceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhhhccc
Confidence 6666 555555556666554431 111101000 00 0
Q ss_pred EEEeeccCCCCccc-eeEEEee---------------------ecccccCc-------------ccccccccC---cccc
Q psy1415 438 VVFSFDRYSRDDIV-GEVFYSL---------------------QSFETYGH-------------SLSFCRDIQ---PRNL 479 (622)
Q Consensus 438 ~~~~l~~~~~~~~~-g~~~~~l---------------------~~~~~~~~-------------~~~~~~~~~---~~~~ 479 (622)
.+........+... -..|-.+ ..+....+ ...+..+.. ....
T Consensus 495 ~~l~~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~D~~~~f~l~rG~~~~e~~e~ 574 (1105)
T KOG1326|consen 495 STLPASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQDWAVTFKLYRGKEGLECLEQ 574 (1105)
T ss_pred cCCCCCccccccceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhhhccceeEeeeccccCCCccc
Confidence 00000000000000 0000000 00000000 000000000 0011
Q ss_pred ccccCCCCceeeeccc------------------cCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeee
Q psy1415 480 RIKSQGRGEILLSLCW------------------QPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKT 541 (622)
Q Consensus 480 ~~~~~~~G~l~i~l~~------------------~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT 541 (622)
.+.+.-+|.+++...- .|....++|.+.+|-+|.+.|.+|.+|||+++.++ +....-+.
T Consensus 575 ~Ivg~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lG---k~~~~d~~ 651 (1105)
T KOG1326|consen 575 QIVGEFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLG---KKRTLDRA 651 (1105)
T ss_pred chhhhhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeeccccCCCCCcCceeeeeec---cchhhhhh
Confidence 1122233444443221 12224588999999999999999999999999983 33334578
Q ss_pred eeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCCCCceeEEEEECCC
Q psy1415 542 HVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGD 594 (622)
Q Consensus 542 ~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~ 594 (622)
+.+.+|+||+|++.|.+....+... -++++|||+|.++.|+.||+..++|.
T Consensus 652 ~yip~tlnPVfgkmfel~~~lp~ek--~l~v~vyd~D~~~~d~~iget~iDLE 702 (1105)
T KOG1326|consen 652 HYIPNTLNPVFGKMFELECLLPFEK--DLIVEVYDHDLEAQDEKIGETTIDLE 702 (1105)
T ss_pred hcCcCCCCcHHHHHHHhhcccchhh--cceeEEEEeecccccchhhceehhhh
Confidence 8999999999999888887655433 38899999999999999999999996
No 174
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.46 E-value=5.1e-13 Score=118.87 Aligned_cols=102 Identities=27% Similarity=0.485 Sum_probs=84.8
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy1415 502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 581 (622)
Q Consensus 502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~ 581 (622)
|+|.|++|++|+.. |.+||||.+++ ++. .+++|+++++ .||.|||.|.|.+...++....|.|.+||.+..+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~--~~~--~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~ 73 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSL--DQV--EVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD 73 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEE--CCE--EeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC
Confidence 78999999999876 78999999999 333 2568988988 9999999999999876655567889999988777
Q ss_pred CCceeEEEEECCCCCCCcccchhhhhhcCCC
Q psy1415 582 KNEVIGRLDLGGDKSSGTALTHWTDVCNSPR 612 (622)
Q Consensus 582 ~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~ 612 (622)
++.++|.+.|+.. ..+....+||+|.+.++
T Consensus 74 ~~~~~g~v~l~~~-~~~~~~~~w~~L~~~~~ 103 (117)
T cd08383 74 RDIVIGKVALSKL-DLGQGKDEWFPLTPVDP 103 (117)
T ss_pred CeeEEEEEEecCc-CCCCcceeEEECccCCC
Confidence 8889999998864 44777899999987543
No 175
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.45 E-value=1.6e-12 Score=121.98 Aligned_cols=91 Identities=26% Similarity=0.428 Sum_probs=73.3
Q ss_pred CCEEEEEEEEeeCCCCCCC-----------------------------CCCCCCCEEEEEEeCCCc-eeEeeeecCCCCC
Q psy1415 313 ENVLVVTVIKCRDLFIKDT-----------------------------PSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNP 362 (622)
Q Consensus 313 ~~~L~V~vi~a~~L~~~d~-----------------------------~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP 362 (622)
.|.|.|+|++|++|+++|. ..|.+||||+|++ ++. +.||++++++.||
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l--~~~~~~rT~v~~~~~nP 83 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDL--AGARVARTRVIENSENP 83 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEE--CCeEeeEEEEeCCCCCC
Confidence 4789999999999999871 3567899999999 554 6799999999999
Q ss_pred eeeceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 363 IYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 363 ~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
.|||+|.|. +... ...|.|.|+ |++..+ +++||.+.++++++.
T Consensus 84 ~WnE~F~~~-~~~~---~~~l~~~V~-------------------d~d~~~-~~~IG~~~i~l~~l~ 126 (158)
T cd04015 84 VWNESFHIY-CAHY---ASHVEFTVK-------------------DNDVVG-AQLIGRAYIPVEDLL 126 (158)
T ss_pred ccceEEEEE-ccCC---CCEEEEEEE-------------------eCCCcC-CcEEEEEEEEhHHcc
Confidence 999999996 3211 134666666 877764 689999999999987
No 176
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.44 E-value=6.6e-13 Score=119.65 Aligned_cols=89 Identities=33% Similarity=0.570 Sum_probs=73.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc--eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccC
Q psy1415 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ--KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRY 393 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~--~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~ 393 (622)
++|.|++|++|+..+ ..+.+||||++++ ++. ..||+++++++||+|||+|.|. +... ....|
T Consensus 2 lrV~Vi~a~~L~~~d-~~g~~DPYv~v~~--~~~~~~~kT~~v~~t~nP~Wne~f~f~-~~~~--~~~~L---------- 65 (124)
T cd04037 2 VRVYVVRARNLQPKD-PNGKSDPYLKIKL--GKKKINDRDNYIPNTLNPVFGKMFELE-ATLP--GNSIL---------- 65 (124)
T ss_pred EEEEEEECcCCCCCC-CCCCCCcEEEEEE--CCeeccceeeEEECCCCCccceEEEEE-ecCC--CCCEE----------
Confidence 789999999999998 7889999999999 443 5789999999999999999996 2211 12334
Q ss_pred CCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 394 SRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 394 ~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
.++|||++..+++++||++.+++++..
T Consensus 66 ---------~~~V~d~d~~~~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 66 ---------KISVMDYDLLGSDDLIGETVIDLEDRF 92 (124)
T ss_pred ---------EEEEEECCCCCCCceeEEEEEeecccc
Confidence 445559999899999999999998775
No 177
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.44 E-value=1.1e-12 Score=118.29 Aligned_cols=95 Identities=31% Similarity=0.452 Sum_probs=76.4
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecC-CCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415 314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRK-TRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR 392 (622)
Q Consensus 314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~-t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~ 392 (622)
|.|.|.|++|++|+..+ ..+.+||||++++ ++..++|+++++ +.||.|||.|.|. +...+.
T Consensus 1 g~L~V~V~~A~~L~~~~-~~~~~dpyv~v~~--~~~~~~T~~~~~~t~nP~Wne~f~f~-v~~~~~-------------- 62 (124)
T cd04049 1 GTLEVLLISAKGLQDTD-FLGKIDPYVIIQC--RTQERKSKVAKGDGRNPEWNEKFKFT-VEYPGW-------------- 62 (124)
T ss_pred CeEEEEEEecCCCCCCC-CCCCcCceEEEEE--CCEeeeeeEcCCCCCCCcccceEEEE-ecCccc--------------
Confidence 57899999999999988 6789999999999 667889998874 8999999999997 332211
Q ss_pred CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcccc
Q psy1415 393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET 430 (622)
Q Consensus 393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~ 430 (622)
.....|.|+|||.+..+++++||++.+++.++..
T Consensus 63 ----~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~ 96 (124)
T cd04049 63 ----GGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFE 96 (124)
T ss_pred ----CCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhh
Confidence 0123345555599888899999999999999973
No 178
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.43 E-value=1e-12 Score=118.54 Aligned_cols=94 Identities=28% Similarity=0.350 Sum_probs=74.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC-ceeEeeeec-CCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccC
Q psy1415 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-QKVKTRVLR-KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRY 393 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~-~~~kT~vi~-~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~ 393 (622)
|.|+|++|++|+..+ ..+.+||||+|++ ++ ..++|+++. ++.||.|||.|.|. +....+
T Consensus 2 L~V~V~sA~~L~~~~-~~~~~dpYv~v~~--~~~~~~~T~~~~~~~~~P~Wne~f~f~-v~~~~~--------------- 62 (125)
T cd04051 2 LEITIISAEDLKNVN-LFGKMKVYAVVWI--DPSHKQSTPVDRDGGTNPTWNETLRFP-LDERLL--------------- 62 (125)
T ss_pred EEEEEEEcccCCCCC-cccCCceEEEEEE--CCCcccccccccCCCCCCCCCCEEEEE-cChHhc---------------
Confidence 789999999999988 6889999999999 45 688999875 68999999999997 443321
Q ss_pred CCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcccc
Q psy1415 394 SRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET 430 (622)
Q Consensus 394 ~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~ 430 (622)
++....|.+++||++..+++++||++.+++.++..
T Consensus 63 --~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~ 97 (125)
T cd04051 63 --QQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLD 97 (125)
T ss_pred --ccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhc
Confidence 01122344455598888889999999999999973
No 179
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.42 E-value=3.9e-12 Score=116.13 Aligned_cols=88 Identities=28% Similarity=0.445 Sum_probs=71.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC-----------ceeEeeeecCCCCCee-eceeEEcccCcccCCCcEE
Q psy1415 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-----------QKVKTRVLRKTRNPIY-NEEFTFTGITPHQLKGSTL 383 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~-----------~~~kT~vi~~t~nP~W-~e~f~f~~~~~~~l~~~~L 383 (622)
..|.+++|+||+ ++ .+|++||||++++.+++ +.++|+++++++||+| ||.|.|. +... ..|
T Consensus 3 ~~~~~~~A~~L~-~~-~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~-v~~~----~~L 75 (137)
T cd08691 3 FSLSGLQARNLK-KG-MFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFV-GLPT----DVL 75 (137)
T ss_pred EEEEEEEeCCCC-Cc-cCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEE-cCCC----CEE
Confidence 578899999998 66 68999999999997654 3699999999999999 9999997 3322 245
Q ss_pred EEEEEeeccCCCCCCCcceEEEEEeccCCCC---cceeeEEEEeCCccc
Q psy1415 384 HFVVFSFDRYSRDDIGSTLHFVVFSFDRYSR---DDIVGEVFYSLQSFE 429 (622)
Q Consensus 384 ~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~---d~~iG~~~i~l~~l~ 429 (622)
.+.|| |++..++ +++||++.+++.++.
T Consensus 76 ~v~V~-------------------D~~~~~~~~~~d~lG~~~i~l~~l~ 105 (137)
T cd08691 76 EIEVK-------------------DKFAKSRPIIRRFLGKLSIPVQRLL 105 (137)
T ss_pred EEEEE-------------------ecCCCCCccCCceEEEEEEEHHHhc
Confidence 56655 7654333 799999999999997
No 180
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.42 E-value=1.2e-12 Score=120.04 Aligned_cols=105 Identities=33% Similarity=0.482 Sum_probs=77.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCC--CceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccC
Q psy1415 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD--KQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRY 393 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~--~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~ 393 (622)
|.|.|++|++|+.+ .++.+||||++++.+. +.+++|++++++.||.|+|+|.|.+..... .....+.+.
T Consensus 1 L~V~Vi~A~~L~~~--~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~--~~~~~~~~~----- 71 (137)
T cd08675 1 LSVRVLECRDLALK--SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFS--YEKKSFKVE----- 71 (137)
T ss_pred CEEEEEEccCCCcc--cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEcccccc--ccccccccc-----
Confidence 57899999999887 3788999999999532 448999999999999999999997333211 000001111
Q ss_pred CCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 394 SRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 394 ~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
..+-....|.|+|||++..+++++||++.+++.++.
T Consensus 72 ~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~ 107 (137)
T cd08675 72 EEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQ 107 (137)
T ss_pred cccccccEEEEEEEcCCcCcCCcEEEEEEEehhhcc
Confidence 011234457777779998889999999999999986
No 181
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.42 E-value=8.2e-13 Score=122.69 Aligned_cols=94 Identities=34% Similarity=0.553 Sum_probs=75.9
Q ss_pred EECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC---------------------------ceeEeeeecCCCC
Q psy1415 309 YQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---------------------------QKVKTRVLRKTRN 361 (622)
Q Consensus 309 ~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~---------------------------~~~kT~vi~~t~n 361 (622)
..+..+.|.|+|++|++|..+| .+|.+||||+|++.+.. ..++|+++++++|
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d-~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKD-VNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccC-CCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 4456788999999999999999 78999999999985431 2479999999999
Q ss_pred CeeeceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 362 PIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 362 P~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|+|||+|.|. +. ++....|.|.|| |++ +++||++.++++++.
T Consensus 102 P~WnE~F~f~-v~--~~~~~~L~i~V~-------------------D~d----d~~IG~v~i~l~~l~ 143 (153)
T cd08676 102 PVWNETFRFE-VE--DVSNDQLHLDIW-------------------DHD----DDFLGCVNIPLKDLP 143 (153)
T ss_pred CccccEEEEE-ec--cCCCCEEEEEEE-------------------ecC----CCeEEEEEEEHHHhC
Confidence 9999999997 32 223344555555 876 899999999999987
No 182
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=99.42 E-value=3.8e-15 Score=149.07 Aligned_cols=95 Identities=41% Similarity=0.494 Sum_probs=91.4
Q ss_pred ccCCchhccceeccccccCCccccccccccCCChh---hhh----cCCCCCccCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy1415 42 RRSSPLEAKKLALSQMTLKRPTAVRSPAAAGPNSH---YLK----KSPSPTYATPVANQRVEEYKRQIKQLAVKLKEAEA 114 (622)
Q Consensus 42 ~~k~~e~~~kl~~~e~~l~r~e~~r~~~~e~~~~~---~l~----~lk~~~~~~~~~~~~e~~~~~~i~~l~~~lkeae~ 114 (622)
++||+|++|||.++|++|+|+++ |++.+|+++.+ +|+ +||+|++++++++++++.|+++|+.|+.+|++||.
T Consensus 112 e~k~~E~~rkl~~~E~~Le~aEe-R~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~ 190 (237)
T PF00261_consen 112 ERKYEEVERKLKVLEQELERAEE-RAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAEN 190 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999 99999999988 666 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccc
Q psy1415 115 RAEFAEKTVKKLQKEVDRLEVSG 137 (622)
Q Consensus 115 rae~ae~~~~~l~~~~~~le~~~ 137 (622)
||++||++|.+|+++||.|++..
T Consensus 191 Rae~aE~~v~~Le~~id~le~eL 213 (237)
T PF00261_consen 191 RAEFAERRVKKLEKEIDRLEDEL 213 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998864
No 183
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.41 E-value=1.7e-12 Score=116.27 Aligned_cols=90 Identities=24% Similarity=0.427 Sum_probs=75.5
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC-ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415 314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR 392 (622)
Q Consensus 314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~-~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~ 392 (622)
|.|.|+|++|++|+..+ .++.+||||++++ ++ .+++|++++++.||.|||.|.|. +... ...
T Consensus 1 g~L~V~Vi~a~~L~~~d-~~g~~DPYv~v~~--~~~~~~kT~~~~~t~~P~Wne~f~~~-v~~~---~~~---------- 63 (120)
T cd04045 1 GVLRLHIRKANDLKNLE-GVGKIDPYVRVLV--NGIVKGRTVTISNTLNPVWDEVLYVP-VTSP---NQK---------- 63 (120)
T ss_pred CeEEEEEEeeECCCCcc-CCCCcCCEEEEEE--CCEEeeceeEECCCcCCccCceEEEE-ecCC---CCE----------
Confidence 57899999999999998 6899999999999 55 48999999999999999999885 2211 123
Q ss_pred CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|.|+|||++..+++++||++.+++.++.
T Consensus 64 ---------L~v~v~d~~~~~~d~~IG~~~~~l~~l~ 91 (120)
T cd04045 64 ---------ITLEVMDYEKVGKDRSLGSVEINVSDLI 91 (120)
T ss_pred ---------EEEEEEECCCCCCCCeeeEEEEeHHHhh
Confidence 4455559999899999999999999997
No 184
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.41 E-value=8.7e-13 Score=119.31 Aligned_cols=108 Identities=29% Similarity=0.362 Sum_probs=88.0
Q ss_pred EEEEEEEeecCCCCCC--CCCCCCcEEEEEEEeCCe-EeeEeeeeeccCCC-CCeeecEEEEEecCCCCCccEEEEEEEE
Q psy1415 501 RFTIVVLKARNLPKMD--VTGLADPYVKVYLLYKGQ-RVAKKKTHVKKRTL-NPVYNESFVFEVPADNLDSVSLELLLLD 576 (622)
Q Consensus 501 ~L~V~I~~A~~L~~~d--~~g~sDPyV~v~l~~~~~-~~~~~kT~~~~~tl-nP~wne~f~f~v~~~~l~~~~L~i~V~D 576 (622)
.|+|.|++|++|+.++ ..+..||||++++.+.+. ...+++|+++.++. ||.|||.|.|.+..++ ...|.|+|||
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~--~~~l~~~V~d 80 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE--LAFLRFVVYD 80 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC--eEEEEEEEEe
Confidence 5899999999999988 578999999999976543 34578899988775 9999999999988544 2359999999
Q ss_pred cCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCC
Q psy1415 577 WDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRR 613 (622)
Q Consensus 577 ~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~ 613 (622)
++.. ++++||++.++++++.. ..+|++|.+..++
T Consensus 81 ~~~~-~~~~iG~~~~~l~~l~~--g~~~~~l~~~~~~ 114 (128)
T cd00275 81 EDSG-DDDFLGQACLPLDSLRQ--GYRHVPLLDSKGE 114 (128)
T ss_pred CCCC-CCcEeEEEEEEhHHhcC--ceEEEEecCCCCC
Confidence 9988 89999999999976532 3468888876554
No 185
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.41 E-value=1.7e-12 Score=116.29 Aligned_cols=90 Identities=29% Similarity=0.420 Sum_probs=72.6
Q ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC-----ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415 318 VTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-----QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR 392 (622)
Q Consensus 318 V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~-----~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~ 392 (622)
...++|++|+..+ .++.+||||++++.+.. ..++|+++++++||+|+|+|.|. +.... .
T Consensus 4 ~~~i~a~~L~~~d-~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~-~~~~~--~------------ 67 (120)
T cd04048 4 ELSISCRNLLDKD-VLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVD-YYFEE--V------------ 67 (120)
T ss_pred EEEEEccCCCCCC-CCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEE-EEeEe--e------------
Confidence 3568999999998 78999999999997654 16999999999999999999985 32222 1
Q ss_pred CCCCCCCcceEEEEEeccC----CCCcceeeEEEEeCCcccc
Q psy1415 393 YSRDDIGSTLHFVVFSFDR----YSRDDIVGEVFYSLQSFET 430 (622)
Q Consensus 393 ~~~~d~~~~l~i~v~d~d~----~~~d~~iG~~~i~l~~l~~ 430 (622)
..|.|+|||++. .+++++||++.++++++..
T Consensus 68 -------~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~ 102 (120)
T cd04048 68 -------QKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVS 102 (120)
T ss_pred -------eEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhc
Confidence 234555558886 7899999999999999973
No 186
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.40 E-value=4.4e-12 Score=117.66 Aligned_cols=101 Identities=26% Similarity=0.435 Sum_probs=71.8
Q ss_pred EEEEEEEeeC--CCCCCCCCCCCCCEEEEEEe-CCCc--eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEee
Q psy1415 316 LVVTVIKCRD--LFIKDTPSGSSDPYVKVHLL-PDKQ--KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSF 390 (622)
Q Consensus 316 L~V~vi~a~~--L~~~d~~~~~sDPyv~v~l~-~~~~--~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~ 390 (622)
..++|..|++ |+..+ .++.+||||++++. |+.+ ++||+++++|+||+|||+|.|. ++... . .+.
T Consensus 4 ~el~i~~~~~~~l~~~~-~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~-I~~~~--~-~~~------ 72 (155)
T cd08690 4 IELTIVRCIGIPLPSGW-NPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLN-INRKH--R-SFQ------ 72 (155)
T ss_pred eEEEEEEeeccccCCCc-CCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEE-ecccc--c-hhh------
Confidence 3455556666 66776 57889999999973 4333 9999999999999999999997 44331 0 000
Q ss_pred ccCCCCCCCcceEEEEEeccCC-CCcceeeEEEEeCCccccC
Q psy1415 391 DRYSRDDIGSTLHFVVFSFDRY-SRDDIVGEVFYSLQSFETY 431 (622)
Q Consensus 391 d~~~~~d~~~~l~i~v~d~d~~-~~d~~iG~~~i~l~~l~~~ 431 (622)
......+|.++|||++.+ .+|++||++.++|+.+...
T Consensus 73 ----R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~ 110 (155)
T cd08690 73 ----RVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETK 110 (155)
T ss_pred ----hhccCCcEEEEEEeCCCcccCCCeeEEEEEEccccccc
Confidence 001124466666699876 5799999999999999733
No 187
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.40 E-value=3.2e-12 Score=113.45 Aligned_cols=90 Identities=34% Similarity=0.619 Sum_probs=73.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCC
Q psy1415 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSR 395 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~ 395 (622)
|.|.|++|++|+..+ ..+.+||||++++. +...++|+++.++.||+|||+|.|. +... ....
T Consensus 1 l~v~vi~a~~L~~~~-~~~~~dpyv~v~~~-~~~~~~T~v~~~~~~P~Wne~f~~~-~~~~--~~~~------------- 62 (115)
T cd04040 1 LTVDVISAENLPSAD-RNGKSDPFVKFYLN-GEKVFKTKTIKKTLNPVWNESFEVP-VPSR--VRAV------------- 62 (115)
T ss_pred CEEEEEeeeCCCCCC-CCCCCCCeEEEEEC-CCcceeeceecCCCCCcccccEEEE-eccC--CCCE-------------
Confidence 578999999999988 68899999999992 2347899999999999999999996 3211 1233
Q ss_pred CCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 396 DDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 396 ~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
+.|++||++..+++++||++.+++.++.
T Consensus 63 ------l~~~v~d~~~~~~~~~iG~~~~~l~~l~ 90 (115)
T cd04040 63 ------LKVEVYDWDRGGKDDLLGSAYIDLSDLE 90 (115)
T ss_pred ------EEEEEEeCCCCCCCCceEEEEEEHHHcC
Confidence 4445559988889999999999999987
No 188
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.36 E-value=4.1e-12 Score=105.51 Aligned_cols=85 Identities=44% Similarity=0.644 Sum_probs=75.4
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy1415 502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 581 (622)
Q Consensus 502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~ 581 (622)
|+|.|++|+||+..+..+..||||++.+.+... ..++|.++.++.+|.||+.|.|.+....... |.|+|||++..+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~--~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~--l~~~V~~~~~~~ 76 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES--TKYKTKVKKNTSNPVWNEEFEFPLDDPDLDS--LSFEVWDKDSFG 76 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC--EEEEECCBSSBSSEEEEEEEEEEESHGCGTE--EEEEEEEETSSS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeee--eeeeeeeeeccccceeeeeeeeeeecccccc--eEEEEEECCCCC
Confidence 789999999999988889999999999976543 4689999999999999999999987665554 999999999999
Q ss_pred CCceeEEEE
Q psy1415 582 KNEVIGRLD 590 (622)
Q Consensus 582 ~d~~LG~v~ 590 (622)
++++||++.
T Consensus 77 ~~~~iG~~~ 85 (85)
T PF00168_consen 77 KDELIGEVK 85 (85)
T ss_dssp SEEEEEEEE
T ss_pred CCCEEEEEC
Confidence 999999974
No 189
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.35 E-value=1.2e-11 Score=109.96 Aligned_cols=82 Identities=33% Similarity=0.519 Sum_probs=61.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCC
Q psy1415 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYS 394 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~ 394 (622)
|.|.|++|++|+.. +.+||||++++ +++ .++|+++++ .||.|||+|.|. +...++....|.+.++
T Consensus 2 L~v~vi~a~~l~~~----~~~dpyv~v~~--~~~~~~kT~~~~~-~~P~Wne~f~f~-v~~~~~~~~~l~i~v~------ 67 (117)
T cd08383 2 LRLRILEAKNLPSK----GTRDPYCTVSL--DQVEVARTKTVEK-LNPFWGEEFVFD-DPPPDVTFFTLSFYNK------ 67 (117)
T ss_pred eEEEEEEecCCCcC----CCCCceEEEEE--CCEEeEecceEEC-CCCcccceEEEe-cCCccccEEEEEEEEE------
Confidence 68999999999865 67999999999 554 689999999 999999999997 5544443334444444
Q ss_pred CCCCCcceEEEEEeccCCCCcceeeEEEEe
Q psy1415 395 RDDIGSTLHFVVFSFDRYSRDDIVGEVFYS 424 (622)
Q Consensus 395 ~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~ 424 (622)
|.+...++..+|.+.+.
T Consensus 68 -------------d~~~~~~~~~~g~v~l~ 84 (117)
T cd08383 68 -------------DKRSKDRDIVIGKVALS 84 (117)
T ss_pred -------------ecccCCCeeEEEEEEec
Confidence 76666566777765544
No 190
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.35 E-value=2.6e-12 Score=113.37 Aligned_cols=97 Identities=27% Similarity=0.434 Sum_probs=78.7
Q ss_pred CCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCC
Q psy1415 517 VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKS 596 (622)
Q Consensus 517 ~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~ 596 (622)
.+|.+||||++.+ +++. ..+|++++++.||.|||.|.|.+... ....|.|.|||++.+ ++++||.+.++|.++
T Consensus 9 ~~G~~dPYv~v~v--~~~~--~~kT~v~~~t~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l 81 (111)
T cd04052 9 KTGLLSPYAELYL--NGKL--VYTTRVKKKTNNPSWNASTEFLVTDR--RKSRVTVVVKDDRDR-HDPVLGSVSISLNDL 81 (111)
T ss_pred cCCCCCceEEEEE--CCEE--EEEEeeeccCCCCccCCceEEEecCc--CCCEEEEEEEECCCC-CCCeEEEEEecHHHH
Confidence 4788999999999 3332 56888899999999999999998743 334599999999999 899999999999765
Q ss_pred C--CcccchhhhhhcCCCCce---eeEEe
Q psy1415 597 S--GTALTHWTDVCNSPRRQI---AEWLT 620 (622)
Q Consensus 597 ~--~~~~~~W~~L~~~p~~~i---~~w~~ 620 (622)
. +.....||.|.+.+++.| ..|.+
T Consensus 82 ~~~~~~~~~w~~L~~~~~G~i~~~~~~~p 110 (111)
T cd04052 82 IDATSVGQQWFPLSGNGQGRIRISALWKP 110 (111)
T ss_pred HhhhhccceeEECCCCCCCEEEEEEEEec
Confidence 3 344578999998888888 55554
No 191
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.35 E-value=4.9e-12 Score=111.12 Aligned_cols=82 Identities=29% Similarity=0.380 Sum_probs=64.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR 392 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~ 392 (622)
|.|+|.+|+||+ +.+||||++.+.+.+. ++||+++++|+||+|||+|.|. +.. ...|.+.||
T Consensus 1 L~V~V~~A~~L~------~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~-l~~----s~~L~~~v~---- 65 (118)
T cd08686 1 LNVIVHSAQGFK------QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIE-LEG----SQTLRILCY---- 65 (118)
T ss_pred CEEEEEeCCCCC------CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEE-eCC----CCEEEEEEE----
Confidence 578999999994 3489999999865432 7999999999999999999997 432 346777777
Q ss_pred CCCCCCCcceEEEEEec-------cCCCCcceeeEEEEeCCc
Q psy1415 393 YSRDDIGSTLHFVVFSF-------DRYSRDDIVGEVFYSLQS 427 (622)
Q Consensus 393 ~~~~d~~~~l~i~v~d~-------d~~~~d~~iG~~~i~l~~ 427 (622)
|+ |..++|++||.+.+.|+-
T Consensus 66 ---------------d~~~~~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 66 ---------------EKCYSKVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ---------------EcccccccccccCcccEEEEEEEEECH
Confidence 55 456789999888887753
No 192
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.35 E-value=4e-12 Score=114.66 Aligned_cols=93 Identities=29% Similarity=0.411 Sum_probs=78.7
Q ss_pred EEEEEEeecCCCCCC--CCC--CCCcEEEEEEEeCCeEeeEeeeeeccCCCC--CeeecEEEEEecC-------------
Q psy1415 502 FTIVVLKARNLPKMD--VTG--LADPYVKVYLLYKGQRVAKKKTHVKKRTLN--PVYNESFVFEVPA------------- 562 (622)
Q Consensus 502 L~V~I~~A~~L~~~d--~~g--~sDPyV~v~l~~~~~~~~~~kT~~~~~tln--P~wne~f~f~v~~------------- 562 (622)
|+|.|.+|++++..+ ..| .+||||++.+.+. ...+++|.++++++| |.||+.|.|++.-
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~--~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~ 79 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGL--EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE 79 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccC--cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence 899999999966543 466 4999999999553 345789999999999 9999999999876
Q ss_pred --------CCCCccEEEEEEEEcCCCCCCceeEEEEECCCCC
Q psy1415 563 --------DNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKS 596 (622)
Q Consensus 563 --------~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~ 596 (622)
+.+....|.|+|||.|.+++|++||.++++|...
T Consensus 80 ~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l 121 (133)
T cd08374 80 HFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSIL 121 (133)
T ss_pred cccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhc
Confidence 4455678999999999999999999999999743
No 193
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.34 E-value=3.3e-12 Score=117.35 Aligned_cols=103 Identities=18% Similarity=0.285 Sum_probs=83.6
Q ss_pred cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCC
Q psy1415 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 579 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~ 579 (622)
..|.|.|++|++|++++ +|||.+.+ ++.. ..||+++.++.||.|+|.|.|..... . ..|.|.||+.+.
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~L--d~~~--vaRT~v~~~~~nP~W~E~F~f~~~~~-~--~~l~v~v~k~~~ 78 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCL--DKTL--YARTTSKLKTDTLFWGEHFEFSNLPP-V--SVITVNLYRESD 78 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEE--CCEE--EEEEEEEcCCCCCcceeeEEecCCCc-c--cEEEEEEEEccC
Confidence 56999999999999876 89999999 5443 56999999999999999999975432 2 249999986543
Q ss_pred -CC---CCceeEEEEECCCCCC-CcccchhhhhhcCCCCc
Q psy1415 580 -VT---KNEVIGRLDLGGDKSS-GTALTHWTDVCNSPRRQ 614 (622)
Q Consensus 580 -~~---~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p~~~ 614 (622)
.+ ++.+||.+.|++..+. +...+.||+|.+..++.
T Consensus 79 ~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~ 118 (146)
T cd04013 79 KKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNG 118 (146)
T ss_pred ccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCC
Confidence 22 6789999999998654 57789999999988776
No 194
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.34 E-value=5.9e-12 Score=111.14 Aligned_cols=80 Identities=28% Similarity=0.360 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceE
Q psy1415 325 DLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLH 403 (622)
Q Consensus 325 ~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~ 403 (622)
+|...+..+|.+||||++++ +++ .++|++++++.||.|||.|.|.+.+. ....|.|.|+
T Consensus 2 ~~~~~~~~~G~~dPYv~v~v--~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~---~~~~l~i~v~--------------- 61 (111)
T cd04052 2 GLDTSESKTGLLSPYAELYL--NGKLVYTTRVKKKTNNPSWNASTEFLVTDR---RKSRVTVVVK--------------- 61 (111)
T ss_pred CcccccccCCCCCceEEEEE--CCEEEEEEeeeccCCCCccCCceEEEecCc---CCCEEEEEEE---------------
Confidence 34433336789999999999 664 78999999999999999999963221 2334555555
Q ss_pred EEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 404 FVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 404 i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|++.. ++++||.+.++|+++.
T Consensus 62 ----d~~~~-~d~~iG~~~v~L~~l~ 82 (111)
T cd04052 62 ----DDRDR-HDPVLGSVSISLNDLI 82 (111)
T ss_pred ----ECCCC-CCCeEEEEEecHHHHH
Confidence 88888 8999999999999986
No 195
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.33 E-value=1.1e-11 Score=111.80 Aligned_cols=99 Identities=27% Similarity=0.370 Sum_probs=79.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCC
Q psy1415 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV 580 (622)
Q Consensus 501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~ 580 (622)
.|+|.|.+|+ |...+..+.+||||++++ ++. ..++|++++++.||.|||.|.|.+.. ...|.|+|||++..
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~--~~~--~~~kT~v~~~t~~P~Wne~f~~~~~~----~~~l~~~V~d~~~~ 73 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTV--DGQ--PPKKTEVSKKTSNPKWNEHFTVLVTP----QSTLEFKVWSHHTL 73 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEE--CCc--ccEEeeeeCCCCCCccccEEEEEeCC----CCEEEEEEEeCCCC
Confidence 5899999998 555555889999999998 333 36789999999999999999999863 23599999999999
Q ss_pred CCCceeEEEEECCCCCCC----cc--cchhhhhh
Q psy1415 581 TKNEVIGRLDLGGDKSSG----TA--LTHWTDVC 608 (622)
Q Consensus 581 ~~d~~LG~v~i~L~~~~~----~~--~~~W~~L~ 608 (622)
+++++||++.++|.+... .. ..-|++|.
T Consensus 74 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~ 107 (125)
T cd04021 74 KADVLLGEASLDLSDILKNHNGKLENVKLTLNLS 107 (125)
T ss_pred CCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEE
Confidence 999999999999874332 11 22377776
No 196
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.32 E-value=2.2e-11 Score=109.90 Aligned_cols=88 Identities=40% Similarity=0.531 Sum_probs=72.4
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415 314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR 392 (622)
Q Consensus 314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~ 392 (622)
..|.|+|++|+ |...+ ..+.+||||++++ +++ .++|++++++.||.|+|.|.|. +.. ...|.|.
T Consensus 2 ~~L~V~i~~a~-l~~~~-~~~~~dPyv~v~~--~~~~~~kT~v~~~t~~P~Wne~f~~~-~~~----~~~l~~~------ 66 (125)
T cd04021 2 SQLQITVESAK-LKSNS-KSFKPDPYVEVTV--DGQPPKKTEVSKKTSNPKWNEHFTVL-VTP----QSTLEFK------ 66 (125)
T ss_pred ceEEEEEEeeE-CCCCC-cCCCCCeEEEEEE--CCcccEEeeeeCCCCCCccccEEEEE-eCC----CCEEEEE------
Confidence 46899999998 55555 4788999999999 565 8999999999999999999996 331 2244444
Q ss_pred CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|||++..+++++||++.++|.++.
T Consensus 67 -------------V~d~~~~~~~~~iG~~~i~l~~l~ 90 (125)
T cd04021 67 -------------VWSHHTLKADVLLGEASLDLSDIL 90 (125)
T ss_pred -------------EEeCCCCCCCcEEEEEEEEHHHhH
Confidence 459999889999999999999987
No 197
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.31 E-value=2.8e-11 Score=111.24 Aligned_cols=85 Identities=22% Similarity=0.371 Sum_probs=68.1
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415 314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR 392 (622)
Q Consensus 314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~ 392 (622)
+.|.|.|++|++|+.++ +|||.|.+ ++. +.||+++.++.||.|+|.|.|..... -..+.|.|+
T Consensus 11 ~sL~v~V~EAk~Lp~~~------~~Y~~i~L--d~~~vaRT~v~~~~~nP~W~E~F~f~~~~~----~~~l~v~v~---- 74 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK------RYYCELCL--DKTLYARTTSKLKTDTLFWGEHFEFSNLPP----VSVITVNLY---- 74 (146)
T ss_pred EEEEEEEEEccCCCCcC------CceEEEEE--CCEEEEEEEEEcCCCCCcceeeEEecCCCc----ccEEEEEEE----
Confidence 46899999999998775 79999999 777 67999999999999999999962222 135777776
Q ss_pred CCCCCCCcceEEEEEecc-C---CCCcceeeEEEEeCCccc
Q psy1415 393 YSRDDIGSTLHFVVFSFD-R---YSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 393 ~~~~d~~~~l~i~v~d~d-~---~~~d~~iG~~~i~l~~l~ 429 (622)
+.+ . ..++++||.+.|++.++.
T Consensus 75 ---------------k~~~~~~~~~~~~~IG~V~Ip~~~l~ 100 (146)
T cd04013 75 ---------------RESDKKKKKDKSQLIGTVNIPVTDVS 100 (146)
T ss_pred ---------------EccCccccccCCcEEEEEEEEHHHhc
Confidence 222 1 126799999999999997
No 198
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.25 E-value=8.5e-12 Score=152.17 Aligned_cols=113 Identities=15% Similarity=0.266 Sum_probs=93.0
Q ss_pred ccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcC
Q psy1415 499 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD 578 (622)
Q Consensus 499 ~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d 578 (622)
.|.|+|+|++|.||. +..|.+||||++.++++. +.||++++++.||.|||.|.|.+..+...+ .|.|+|||+|
T Consensus 1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~----~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~-~l~iev~d~d 2051 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGP----PRQTKVVSHSSSPEWKEGFTWAFDSPPKGQ-KLHISCKSKN 2051 (2102)
T ss_pred CcceEEEEeeccccc--cccCCCCCeEEEEECCCC----cccccccCCCCCCCcccceeeeecCCCCCC-ceEEEEEecC
Confidence 489999999999998 557999999999995432 458999999999999999998887654333 4999999999
Q ss_pred CCCCCceeEEEEECCCCCC-Ccccchhhhhhc--CCCCc-----ee-eEE
Q psy1415 579 RVTKNEVIGRLDLGGDKSS-GTALTHWTDVCN--SPRRQ-----IA-EWL 619 (622)
Q Consensus 579 ~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~--~p~~~-----i~-~w~ 619 (622)
.+++| .||.+.|+|.+.. +..+..||.|.+ +..++ |+ +|-
T Consensus 2052 ~f~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2052 TFGKS-SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred ccCCC-CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEec
Confidence 99655 9999999998755 788899999996 33444 45 774
No 199
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.25 E-value=9.7e-11 Score=105.84 Aligned_cols=92 Identities=32% Similarity=0.511 Sum_probs=71.5
Q ss_pred EEEEEEEEeeCCCCCCC-CCCCCCCEEEEEEeCCC----ceeEeeeecCCC-CCeeeceeEEcccCcccCCCcEEEEEEE
Q psy1415 315 VLVVTVIKCRDLFIKDT-PSGSSDPYVKVHLLPDK----QKVKTRVLRKTR-NPIYNEEFTFTGITPHQLKGSTLHFVVF 388 (622)
Q Consensus 315 ~L~V~vi~a~~L~~~d~-~~~~sDPyv~v~l~~~~----~~~kT~vi~~t~-nP~W~e~f~f~~~~~~~l~~~~L~~~V~ 388 (622)
.|+|+|++|+||+..+. ..+.+||||++++.+.+ ..++|+++.++. ||.|+|+|.|. +...+ ...|.|.||
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~-~~~~~--~~~l~~~V~ 79 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFD-VTVPE--LAFLRFVVY 79 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEE-EeCCC--eEEEEEEEE
Confidence 68999999999988762 26789999999985432 379999988776 99999999997 32221 123445554
Q ss_pred eeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 389 SFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 389 d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|.+.. ++++||++.++++++.
T Consensus 80 -------------------d~~~~-~~~~iG~~~~~l~~l~ 100 (128)
T cd00275 80 -------------------DEDSG-DDDFLGQACLPLDSLR 100 (128)
T ss_pred -------------------eCCCC-CCcEeEEEEEEhHHhc
Confidence 88877 8999999999999985
No 200
>PLN03008 Phospholipase D delta
Probab=99.24 E-value=1.3e-11 Score=138.62 Aligned_cols=108 Identities=25% Similarity=0.426 Sum_probs=88.3
Q ss_pred cEEEEEEEeecCCCCCCC------------------------------------------CCCCCcEEEEEEEeCCeEee
Q psy1415 500 NRFTIVVLKARNLPKMDV------------------------------------------TGLADPYVKVYLLYKGQRVA 537 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~d~------------------------------------------~g~sDPyV~v~l~~~~~~~~ 537 (622)
|.|.++|++|++|++||. .+.+||||++.+ ++..
T Consensus 14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~L--g~~r-- 89 (868)
T PLN03008 14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVV--PQAT-- 89 (868)
T ss_pred cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEE--CCcc--
Confidence 678889999998886432 246799999999 3322
Q ss_pred EeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCC-CcccchhhhhhcCCCCce
Q psy1415 538 KKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNSPRRQI 615 (622)
Q Consensus 538 ~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~p~~~i 615 (622)
+.||+++++++||+|||.|.|.+... ...|+|+|||+|.++ +++||++.|++.++. +...+.|++|++.-++.+
T Consensus 90 v~RTrVi~n~~NPvWNE~F~f~vah~---~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~ 164 (868)
T PLN03008 90 LARTRVLKNSQEPLWDEKFNISIAHP---FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASGKPP 164 (868)
T ss_pred eeeEEeCCCCCCCCcceeEEEEecCC---CceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCCCCC
Confidence 55899999999999999999999853 235999999999997 589999999998654 567889999999877655
No 201
>PLN03008 Phospholipase D delta
Probab=99.24 E-value=7.3e-11 Score=132.59 Aligned_cols=82 Identities=26% Similarity=0.382 Sum_probs=62.3
Q ss_pred CCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCC
Q psy1415 334 GSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRY 412 (622)
Q Consensus 334 ~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~ 412 (622)
+++||||+|.+ ++. +.||+++++++||+|||+|.|.+..+ ...|.|.|+ |+|.+
T Consensus 75 ~tSDPYV~I~L--g~~rv~RTrVi~n~~NPvWNE~F~f~vah~----~s~L~f~Vk-------------------D~D~~ 129 (868)
T PLN03008 75 ITSDPYVTVVV--PQATLARTRVLKNSQEPLWDEKFNISIAHP----FAYLEFQVK-------------------DDDVF 129 (868)
T ss_pred CCCCceEEEEE--CCcceeeEEeCCCCCCCCcceeEEEEecCC----CceEEEEEE-------------------cCCcc
Confidence 46899999999 444 78999999999999999999973322 235666666 88888
Q ss_pred CCcceeeEEEEeCCccccCCceeeEEEEeec
Q psy1415 413 SRDDIVGEVFYSLQSFETYGSTLHFVVFSFD 443 (622)
Q Consensus 413 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~~l~ 443 (622)
+ +++||++.++++++.... ....|+.+.
T Consensus 130 g-aD~IG~a~IPL~~L~~Ge--~vd~Wl~Ll 157 (868)
T PLN03008 130 G-AQIIGTAKIPVRDIASGE--RISGWFPVL 157 (868)
T ss_pred C-CceeEEEEEEHHHcCCCC--ceEEEEEcc
Confidence 6 589999999999987322 233455543
No 202
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.21 E-value=8.6e-11 Score=97.47 Aligned_cols=84 Identities=40% Similarity=0.709 Sum_probs=68.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC-ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCC
Q psy1415 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYS 394 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~-~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~ 394 (622)
|.|.|++|+||+..+ ..+.+|||+++++.... ..++|++++++.||.|+|.|.|. +...+... |.|.|
T Consensus 1 L~v~I~~a~~L~~~~-~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~-~~~~~~~~--l~~~V------- 69 (85)
T PF00168_consen 1 LTVTIHSARNLPSKD-SNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFP-LDDPDLDS--LSFEV------- 69 (85)
T ss_dssp EEEEEEEEESSSSSS-TTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEE-ESHGCGTE--EEEEE-------
T ss_pred CEEEEEEEECCCCcc-cCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeee-eecccccc--eEEEE-------
Confidence 689999999999987 68899999999995433 37999999999999999999997 45444322 55554
Q ss_pred CCCCCcceEEEEEeccCCCCcceeeEEE
Q psy1415 395 RDDIGSTLHFVVFSFDRYSRDDIVGEVF 422 (622)
Q Consensus 395 ~~d~~~~l~i~v~d~d~~~~d~~iG~~~ 422 (622)
||++..+++++||++.
T Consensus 70 ------------~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 70 ------------WDKDSFGKDELIGEVK 85 (85)
T ss_dssp ------------EEETSSSSEEEEEEEE
T ss_pred ------------EECCCCCCCCEEEEEC
Confidence 5999988899999873
No 203
>KOG1326|consensus
Probab=99.16 E-value=2.7e-11 Score=135.29 Aligned_cols=256 Identities=23% Similarity=0.342 Sum_probs=151.9
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc--eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeec
Q psy1415 314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ--KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFD 391 (622)
Q Consensus 314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~--~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d 391 (622)
..++|++++|.+|.+.| .+|.+|||+++.+ +++ .-++..+.+|+||+|++.|++...-+. ...+.+.||
T Consensus 613 ~LvrVyvv~A~~L~p~D-~ng~adpYv~l~l--Gk~~~~d~~~yip~tlnPVfgkmfel~~~lp~---ek~l~v~vy--- 683 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSD-GNGDADPYVKLLL--GKKRTLDRAHYIPNTLNPVFGKMFELECLLPF---EKDLIVEVY--- 683 (1105)
T ss_pred eeEEEEEEEeeeccccC-CCCCcCceeeeee--ccchhhhhhhcCcCCCCcHHHHHHHhhcccch---hhcceeEEE---
Confidence 45779999999999999 7999999999999 665 467888999999999998887522222 234455555
Q ss_pred cCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccccC------CceeeE------EEEeeccC--------CCCccc
Q psy1415 392 RYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETY------GSTLHF------VVFSFDRY--------SRDDIV 451 (622)
Q Consensus 392 ~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~~------~~~~~~------~~~~l~~~--------~~~~~~ 451 (622)
|+|..++|+.||+..++|+.--.. +-..+. .|..-..+ ...+..
T Consensus 684 ----------------d~D~~~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~ 747 (1105)
T KOG1326|consen 684 ----------------DHDLEAQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIP 747 (1105)
T ss_pred ----------------EeecccccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCC
Confidence 899999999999999988643211 000111 11111000 000111
Q ss_pred eeEEEee--------ec---ccccC----------------cccccccccCccc-----cc---cccCCCCceeeecccc
Q psy1415 452 GEVFYSL--------QS---FETYG----------------HSLSFCRDIQPRN-----LR---IKSQGRGEILLSLCWQ 496 (622)
Q Consensus 452 g~~~~~l--------~~---~~~~~----------------~~~~~~~~~~~~~-----~~---~~~~~~G~l~i~l~~~ 496 (622)
+..++.- .. .+... ..+.....+-|.. +. .....+|++.+-+.+.
T Consensus 748 ~P~~~~e~~~i~~~g~~~~~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~f 827 (1105)
T KOG1326|consen 748 RPYYSYEVSAIKWKGESDIYDEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFF 827 (1105)
T ss_pred CCeecCCcceEEecChhhhhcccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhc
Confidence 1100000 00 00000 0000111111111 10 1123456665544332
Q ss_pred ---------------CCccEEEEEEEeecCCCCCCCC----CCCCcEEEEEEEeCCeEeeEeeeeeccCCC----CCeee
Q psy1415 497 ---------------PAANRFTIVVLKARNLPKMDVT----GLADPYVKVYLLYKGQRVAKKKTHVKKRTL----NPVYN 553 (622)
Q Consensus 497 ---------------~~~g~L~V~I~~A~~L~~~d~~----g~sDPyV~v~l~~~~~~~~~~kT~~~~~tl----nP~wn 553 (622)
|....++|.|..-.+....|.. ..+|.||+--+. |....+++|.+.++++ |..|.
T Consensus 828 p~d~~~ppl~itpr~~~~~~lrviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~--gdee~kq~tdvhyrsl~ge~~fnwr 905 (1105)
T KOG1326|consen 828 PKDLYAPPLNITPRKPKKYELRVIIWNTDKVRLNDDEITGEKMSDIYVKGWVL--GDEEEKQKTDVHYRSLTGEGNFNWR 905 (1105)
T ss_pred ccccCCCCCCCCCCChhheeEEEEEeeccceeecCccceeeeccceEEecccc--cchhhhcccceeeeeccCCccccee
Confidence 2235799999888887665543 357999998774 3344577888887654 55566
Q ss_pred cEEEEEe-cCCCCC------------------ccEEEEEEEEcCCCCCCceeEEEEECCCCC
Q psy1415 554 ESFVFEV-PADNLD------------------SVSLELLLLDWDRVTKNEVIGRLDLGGDKS 596 (622)
Q Consensus 554 e~f~f~v-~~~~l~------------------~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~ 596 (622)
-.|.|+. +.++++ -..|.|.|||.|.+++|+|||.++++|++.
T Consensus 906 ~~f~~Dyl~ae~~~vi~kke~~ws~dete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~ 967 (1105)
T KOG1326|consen 906 FVFPFDYLPAEQLCVIAKKEYSWSLDETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDM 967 (1105)
T ss_pred eecccccchHhhHhhhhhhhhccccccccccCchheEEEecccCccChhhhhhheeechhhC
Confidence 5555542 111111 123899999999999999999999999853
No 204
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.13 E-value=2.9e-10 Score=102.68 Aligned_cols=113 Identities=27% Similarity=0.297 Sum_probs=81.0
Q ss_pred EEEEEEEeeCCCCCCC-CCC--CCCCEEEEEEeCC-CceeEeeeecCCCC--CeeeceeEEcccCcccCCCcEEEEEEEe
Q psy1415 316 LVVTVIKCRDLFIKDT-PSG--SSDPYVKVHLLPD-KQKVKTRVLRKTRN--PIYNEEFTFTGITPHQLKGSTLHFVVFS 389 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~-~~~--~sDPyv~v~l~~~-~~~~kT~vi~~t~n--P~W~e~f~f~~~~~~~l~~~~L~~~V~d 389 (622)
|+|.|++|++++..+. ..| .+||||++.+.+. ..+++|.+.++++| |.||+.|.|. +..-......+...-++
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~-~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFP-FDYLPAEKKIVVIKKEH 80 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEe-eecCCccceeEEEeecc
Confidence 7899999999654330 355 4999999999765 34899999999999 9999999986 33211112222233332
Q ss_pred eccCC--CCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 390 FDRYS--RDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 390 ~d~~~--~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
+...+ ..-....|.++|||+|.+++|++||++.++|+.+.
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~ 122 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILP 122 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcc
Confidence 22222 11244558889999999999999999999999887
No 205
>KOG1327|consensus
Probab=99.12 E-value=8e-10 Score=118.64 Aligned_cols=188 Identities=24% Similarity=0.361 Sum_probs=136.7
Q ss_pred eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 350 KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 350 ~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
..+|+++++.+||.|.+.|... ...+.. +.++|.++|.+.. .......+|+|++.+.+.++.
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~-y~fE~v--Q~l~~~~~~~~~~---------------~~~l~~~dflg~~~c~l~~iv 103 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQ-YRFEKV--QLLRFEVYDIDSR---------------TPDLSSADFLGTAECTLSQIV 103 (529)
T ss_pred ccceeeeeccCCccceeeechh-heeeee--eeEEEEEeecCCc---------------cCCcchhcccceeeeehhhhh
Confidence 5599999999999999988764 444443 3577777733321 123456799999999999887
Q ss_pred cCCceeeEEEEeeccCCCCccceeEEEeeecccccCcccccccccCccccccccCCCCceeeeccccCCccEEEEEEEee
Q psy1415 430 TYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKA 509 (622)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~i~l~~~~~~g~L~V~I~~A 509 (622)
.... ......+.+ ......|.|.+.+.-...........++|
T Consensus 104 s~~~----------------------------------~~~~l~~~~----~~~~~~g~iti~aee~~~~~~~~~~~~~~ 145 (529)
T KOG1327|consen 104 SSSG----------------------------------LTGPLLLKP----GKNAGSGTITISAEEDESDNDVVQFSFRA 145 (529)
T ss_pred hhhh----------------------------------hhhhhhccc----CccCCcccEEEEeecccccCceeeeeeee
Confidence 1111 000000000 03346677877776555555666677889
Q ss_pred cCCCCCCCCCCCCcEEEEEEE-eCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCC----ccEEEEEEEEcCCCCCCc
Q psy1415 510 RNLPKMDVTGLADPYVKVYLL-YKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD----SVSLELLLLDWDRVTKNE 584 (622)
Q Consensus 510 ~~L~~~d~~g~sDPyV~v~l~-~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~----~~~L~i~V~D~d~~~~d~ 584 (622)
++|.+.|..+++|||..++-. .++.+...++|.++++++||.|.. |.+....++ +.++.|.+||++..++++
T Consensus 146 ~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~---~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~ 222 (529)
T KOG1327|consen 146 KNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP---FSISLQSLCSKDGNRPIQIECYDYDSNGKHD 222 (529)
T ss_pred eecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc---cccchhhhcccCCCCceEEEEeccCCCCCcC
Confidence 999999999999999999876 367777899999999999999994 666655555 367999999999999999
Q ss_pred eeEEEEECCCCC
Q psy1415 585 VIGRLDLGGDKS 596 (622)
Q Consensus 585 ~LG~v~i~L~~~ 596 (622)
+||+++-++...
T Consensus 223 ~ig~~~tt~~~~ 234 (529)
T KOG1327|consen 223 LIGKFQTTLSEL 234 (529)
T ss_pred ceeEecccHHHh
Confidence 999999887644
No 206
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.10 E-value=6.6e-10 Score=94.62 Aligned_cols=93 Identities=44% Similarity=0.623 Sum_probs=77.8
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy1415 502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 581 (622)
Q Consensus 502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~ 581 (622)
|.|.|++|++|......+..+|||++++.+.+ ....+|+.+.++.||.||+.|.|.+.... ...|.|+|||.+..+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~--~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~~l~i~v~~~~~~~ 77 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDP--KEKKKTKVVKNTLNPVWNETFEFEVPPPE--LAELEIEVYDKDRFG 77 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc--cceEeeeEecCCCCCcccceEEEEecCcc--cCEEEEEEEecCCcc
Confidence 67999999999888766788999999996543 33678999999999999999999987543 456999999999888
Q ss_pred CCceeEEEEECCCCCCC
Q psy1415 582 KNEVIGRLDLGGDKSSG 598 (622)
Q Consensus 582 ~d~~LG~v~i~L~~~~~ 598 (622)
.+.++|.+.+++.+...
T Consensus 78 ~~~~~G~~~~~l~~~~~ 94 (101)
T smart00239 78 RDDFIGQVTIPLSDLLL 94 (101)
T ss_pred CCceeEEEEEEHHHccc
Confidence 89999999999865443
No 207
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.06 E-value=4.3e-10 Score=137.59 Aligned_cols=90 Identities=22% Similarity=0.393 Sum_probs=73.2
Q ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeec
Q psy1415 313 ENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFD 391 (622)
Q Consensus 313 ~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d 391 (622)
.|.|.|+|++|.||. . .++.+||||++.+ +++ +.||++++++.||+|||+|.|..-.+.
T Consensus 1979 ~G~L~V~V~~a~nl~-~--~~~~sdPyv~l~~--g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~--------------- 2038 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK-Q--SMGNTNAFCKLTL--GNGPPRQTKVVSHSSSPEWKEGFTWAFDSPP--------------- 2038 (2102)
T ss_pred CcceEEEEeeccccc-c--ccCCCCCeEEEEE--CCCCcccccccCCCCCCCcccceeeeecCCC---------------
Confidence 589999999999998 3 3789999999999 655 789999999999999999997411111
Q ss_pred cCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 392 RYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 392 ~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
.+.+|.|+|||+|.++ ++.||.+.|++.++.
T Consensus 2039 ------~~~~l~iev~d~d~f~-kd~~G~~~i~l~~vv 2069 (2102)
T PLN03200 2039 ------KGQKLHISCKSKNTFG-KSSLGKVTIQIDRVV 2069 (2102)
T ss_pred ------CCCceEEEEEecCccC-CCCCceEEEEHHHHh
Confidence 2234566666999885 459999999999997
No 208
>KOG1011|consensus
Probab=99.06 E-value=1.5e-10 Score=123.28 Aligned_cols=106 Identities=25% Similarity=0.423 Sum_probs=89.0
Q ss_pred ccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcC
Q psy1415 499 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD 578 (622)
Q Consensus 499 ~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d 578 (622)
...++++|++|.+|...|..|++||||.+.++.. +.||+++...+||+|||.|.|...+.. ..|.+.|||.|
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv~kt-----krrtrti~~~lnpvw~ekfhfechnst---drikvrvwded 365 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKT-----KRRTRTIHQELNPVWNEKFHFECHNST---DRIKVRVWDED 365 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEeeccc-----chhhHhhhhccchhhhhheeeeecCCC---ceeEEEEecCc
Confidence 3578999999999999999999999999998332 678999999999999999999987653 24999999987
Q ss_pred CC-----------CCCceeEEEEECCCCCCCcccchhhhhhcCCCC
Q psy1415 579 RV-----------TKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRR 613 (622)
Q Consensus 579 ~~-----------~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~ 613 (622)
.. .+|+|||+..|.+. ..+.+.+-||+|-..-++
T Consensus 366 ~dlksklrqkl~resddflgqtvievr-tlsgemdvwynlekrtdk 410 (1283)
T KOG1011|consen 366 NDLKSKLRQKLTRESDDFLGQTVIEVR-TLSGEMDVWYNLEKRTDK 410 (1283)
T ss_pred ccHHHHHHHHhhhcccccccceeEEEE-ecccchhhhcchhhccch
Confidence 64 46899999999874 445677899999876553
No 209
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.02 E-value=1.6e-09 Score=91.73 Aligned_cols=90 Identities=41% Similarity=0.598 Sum_probs=75.8
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy1415 502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 581 (622)
Q Consensus 502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~ 581 (622)
|.|.|++|++|......+..+|||.+.+.+ ....+|.++.++.||.||+.|.|.+... ....|.|.|||++..+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~----~~~~~T~~~~~~~~P~w~~~~~~~~~~~--~~~~l~i~v~~~~~~~ 74 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG----KQKFKTKVVKNTLNPVWNETFEFPVLDP--ESDTLTVEVWDKDRFS 74 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc----CceEecceeCCCCCCcccceEEEEccCC--CCCEEEEEEEecCCCC
Confidence 468999999998877778899999999944 2367899999999999999999998753 2345999999999888
Q ss_pred CCceeEEEEECCCCCC
Q psy1415 582 KNEVIGRLDLGGDKSS 597 (622)
Q Consensus 582 ~d~~LG~v~i~L~~~~ 597 (622)
.+.+||.+.+++.+..
T Consensus 75 ~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 75 KDDFLGEVEIPLSELL 90 (102)
T ss_pred CCceeEEEEEeHHHhh
Confidence 8999999999987543
No 210
>KOG1328|consensus
Probab=98.99 E-value=2e-10 Score=124.03 Aligned_cols=114 Identities=31% Similarity=0.501 Sum_probs=96.7
Q ss_pred CCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCe--EeeEeeeeeccCCCCCeeecEEEEEecC
Q psy1415 485 GRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQ--RVAKKKTHVKKRTLNPVYNESFVFEVPA 562 (622)
Q Consensus 485 ~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~--~~~~~kT~~~~~tlnP~wne~f~f~v~~ 562 (622)
..|.+.+...|.-....|.|.|+.|+++.+.|.+|.+||||.+++++... -...++|.++++|+||+|+|.|+|.|+.
T Consensus 932 ~fg~lsvr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~ 1011 (1103)
T KOG1328|consen 932 QFGVLSVRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPP 1011 (1103)
T ss_pred cCCceEEEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCc
Confidence 44666777777777788999999999999999999999999999976321 1235789999999999999999999997
Q ss_pred CCCC--ccEEEEEEEEcCCCCCCceeEEEEECCCCCCC
Q psy1415 563 DNLD--SVSLELLLLDWDRVTKNEVIGRLDLGGDKSSG 598 (622)
Q Consensus 563 ~~l~--~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~ 598 (622)
+... ...|.|+|+|+|-.+.++|-|.+-+.|.++.|
T Consensus 1012 e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1012 EPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred cccccccceEEEEeeccceecccccchHHHHhhCCCCC
Confidence 6433 56799999999999999999999999986655
No 211
>KOG1328|consensus
Probab=98.96 E-value=3.6e-10 Score=122.17 Aligned_cols=111 Identities=32% Similarity=0.618 Sum_probs=98.1
Q ss_pred CcceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc-----eeEeeeecCCCCCeeeceeEEcc
Q psy1415 298 GKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-----KVKTRVLRKTRNPIYNEEFTFTG 372 (622)
Q Consensus 298 ~~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~-----~~kT~vi~~t~nP~W~e~f~f~~ 372 (622)
...|.+.+..+|......|.|.|+.|+++.+.| .+|.|||||.|.+.|.-. +++|+|..+|+||+|+|.|+|.
T Consensus 931 ~~fg~lsvr~~y~~n~q~L~veVlhA~diipLD-~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFs- 1008 (1103)
T KOG1328|consen 931 HQFGVLSVRAYYNGNAQTLVVEVLHAKDIIPLD-SNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFS- 1008 (1103)
T ss_pred CcCCceEEEEEeeccccchhhhhhccccccccC-CCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeee-
Confidence 346888999999999999999999999999999 899999999999966443 7899999999999999999998
Q ss_pred cCcccCC--CcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 373 ITPHQLK--GSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 373 ~~~~~l~--~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
++++... ...+.|+|+ |+|-+..+||-|++.+.|+.+.
T Consensus 1009 Vp~e~c~te~Am~~FTVM-------------------DHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1009 VPPEPCSTETAMLHFTVM-------------------DHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred cCccccccccceEEEEee-------------------ccceecccccchHHHHhhCCCC
Confidence 7776544 455777777 9999999999999999999987
No 212
>PLN02223 phosphoinositide phospholipase C
Probab=98.96 E-value=2.8e-09 Score=115.59 Aligned_cols=112 Identities=14% Similarity=0.178 Sum_probs=86.5
Q ss_pred cEEEEEEEeecCCCCC-----CCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEE
Q psy1415 500 NRFTIVVLKARNLPKM-----DVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLL 574 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~-----d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V 574 (622)
..|.|.|+.+.+++.. +.....||||+|.+.+-.....+++|.+..++.||.|||.|.|.|..+++. .|.|.|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELA--lLrf~V 486 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLA--LISFEV 486 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCce--EEEEEE
Confidence 5699999999987521 223457999999997633333456787777899999999999999988766 489999
Q ss_pred EEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCce
Q psy1415 575 LDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQI 615 (622)
Q Consensus 575 ~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i 615 (622)
+|+|..+.++|+|+..+|+. ...+++ ++.+|++.-|..+
T Consensus 487 ~D~D~~~~ddfiGQ~~LPv~-~Lr~Gy-R~VpL~~~~g~~l 525 (537)
T PLN02223 487 YDYEVSTADAFCGQTCLPVS-ELIEGI-RAVPLYDERGKAC 525 (537)
T ss_pred EecCCCCCCcEEEEEecchH-HhcCCc-eeEeccCCCcCCC
Confidence 99999889999999999995 444443 4557777766654
No 213
>PLN02952 phosphoinositide phospholipase C
Probab=98.92 E-value=4.6e-09 Score=116.23 Aligned_cols=113 Identities=19% Similarity=0.263 Sum_probs=89.0
Q ss_pred ccEEEEEEEeecCCCCC------CCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEE
Q psy1415 499 ANRFTIVVLKARNLPKM------DVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLEL 572 (622)
Q Consensus 499 ~g~L~V~I~~A~~L~~~------d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i 572 (622)
...|.|.|+.|.+++.. +.....||||++.+.+-.....+++|+++.++.||.||+.|.|.+..+++. -+.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELA--llrf 546 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELA--LLRI 546 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCcc--EEEE
Confidence 45799999999987532 112335999999996533333577899999999999999999999887765 4899
Q ss_pred EEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCce
Q psy1415 573 LLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQI 615 (622)
Q Consensus 573 ~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i 615 (622)
.|||+|..+.++|+|+..|++. ...+++ +|.+|.+.-|..+
T Consensus 547 ~V~D~D~~~~ddfiGq~~lPv~-~Lr~Gy-R~VpL~~~~G~~l 587 (599)
T PLN02952 547 EVREYDMSEKDDFGGQTCLPVS-ELRPGI-RSVPLHDKKGEKL 587 (599)
T ss_pred EEEecCCCCCCCeEEEEEcchh-HhcCCc-eeEeCcCCCCCCC
Confidence 9999999989999999999995 444444 4889987777665
No 214
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.91 E-value=1.3e-08 Score=86.64 Aligned_cols=91 Identities=43% Similarity=0.706 Sum_probs=71.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC-ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCC
Q psy1415 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYS 394 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~-~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~ 394 (622)
+.+.|++|++|.... ..+..+||+++++.+.+ ..++|+++.++.||.|++.|.|. +.... ...|.|.|
T Consensus 2 l~i~i~~~~~l~~~~-~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~-~~~~~--~~~l~i~v------- 70 (101)
T smart00239 2 LTVKIISARNLPKKD-KKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFE-VPPPE--LAELEIEV------- 70 (101)
T ss_pred eEEEEEEeeCCCCCC-CCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEE-ecCcc--cCEEEEEE-------
Confidence 678999999998876 45678999999995432 48999999999999999999997 32221 33444444
Q ss_pred CCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 395 RDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 395 ~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
||.+..+.+.++|.+.+++.++.
T Consensus 71 ------------~~~~~~~~~~~~G~~~~~l~~~~ 93 (101)
T smart00239 71 ------------YDKDRFGRDDFIGQVTIPLSDLL 93 (101)
T ss_pred ------------EecCCccCCceeEEEEEEHHHcc
Confidence 48887778899999999998886
No 215
>KOG0905|consensus
Probab=98.90 E-value=1.2e-09 Score=123.65 Aligned_cols=127 Identities=27% Similarity=0.456 Sum_probs=110.1
Q ss_pred ccCCCCceeeeccccCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEE-e
Q psy1415 482 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-V 560 (622)
Q Consensus 482 ~~~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~-v 560 (622)
.+.-.|+++++++|. .|.|+|.|.-|++|+....+...||||+.++.++.++..++||+++++|.||.|||.+.+. +
T Consensus 1508 p~~iggqV~LsIsY~--~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~ 1585 (1639)
T KOG0905|consen 1508 PGEIGGQVKLSISYN--NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGF 1585 (1639)
T ss_pred ccccCceEEEEEEEc--CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCC
Confidence 344567999999996 8999999999999988777888999999999998888889999999999999999999888 5
Q ss_pred cCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCCC-CcccchhhhhhcC
Q psy1415 561 PADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSS-GTALTHWTDVCNS 610 (622)
Q Consensus 561 ~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~-~~~~~~W~~L~~~ 610 (622)
+.+.+.+..|.++||..+.+..+.++|.+.|+|.+.. .++...||+|-..
T Consensus 1586 p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1586 PKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred chhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence 5556666779999999999989999999999997543 4666789998654
No 216
>KOG0905|consensus
Probab=98.83 E-value=6.9e-09 Score=117.54 Aligned_cols=109 Identities=33% Similarity=0.524 Sum_probs=94.0
Q ss_pred cceEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCc
Q psy1415 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITP 375 (622)
Q Consensus 299 ~~G~i~~~l~~~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~ 375 (622)
.-|+|.++++|. .+.|.|.|.-+++|+-.. -+..+|||||.|++|+.+ +.||+++++|.||+|||...+..++.
T Consensus 1511 iggqV~LsIsY~--~~~LtImV~H~K~L~~Lq-dg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~ 1587 (1639)
T KOG0905|consen 1511 IGGQVKLSISYN--NGTLTIMVMHAKGLALLQ-DGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPK 1587 (1639)
T ss_pred cCceEEEEEEEc--CceEEEEhhhhccccccc-CCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCch
Confidence 346999999996 899999999999996555 367799999999999886 89999999999999999999877777
Q ss_pred ccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 376 HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 376 ~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
+.+....|.++|| ..+.+..+.++|.+.|+|..+.
T Consensus 1588 ~~l~qReLQ~sVl-------------------s~~~~~en~~lg~v~i~L~~~~ 1622 (1639)
T KOG0905|consen 1588 EILQQRELQVSVL-------------------SNGGLLENVFLGGVNIPLLKVD 1622 (1639)
T ss_pred hhhhhheeeeeee-------------------cccceeeeeeeeeeecchhhcc
Confidence 7776656666666 8888888999999999999886
No 217
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=98.82 E-value=2.9e-08 Score=83.98 Aligned_cols=89 Identities=47% Similarity=0.712 Sum_probs=71.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCC-ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCC
Q psy1415 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYS 394 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~-~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~ 394 (622)
|.|.|++|++|.... ..+.++|||.+++ .+ ..++|.++.++.||.|++.|.|. +... ....+.|.||
T Consensus 1 l~v~i~~~~~l~~~~-~~~~~~~~v~v~~--~~~~~~~T~~~~~~~~P~w~~~~~~~-~~~~--~~~~l~i~v~------ 68 (102)
T cd00030 1 LRVTVIEARNLPAKD-LNGKSDPYVKVSL--GGKQKFKTKVVKNTLNPVWNETFEFP-VLDP--ESDTLTVEVW------ 68 (102)
T ss_pred CEEEEEeeeCCCCcC-CCCCCCcEEEEEe--ccCceEecceeCCCCCCcccceEEEE-ccCC--CCCEEEEEEE------
Confidence 468899999998765 5678999999999 44 68999999999999999999996 3321 1234555555
Q ss_pred CCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 395 RDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 395 ~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
+.+..+.+.+||.+.+++..+.
T Consensus 69 -------------~~~~~~~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 69 -------------DKDRFSKDDFLGEVEIPLSELL 90 (102)
T ss_pred -------------ecCCCCCCceeEEEEEeHHHhh
Confidence 8887777899999999999886
No 218
>KOG1011|consensus
Probab=98.82 E-value=4.7e-09 Score=112.17 Aligned_cols=103 Identities=28% Similarity=0.483 Sum_probs=75.7
Q ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeec
Q psy1415 312 KENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFD 391 (622)
Q Consensus 312 ~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d 391 (622)
++..+.++|+.|.+|..+| ..|++||||.+.+ ++.+.+|++|...+||+|||.|.|...+.. ..+.+.|||.|
T Consensus 293 wsakitltvlcaqgl~akd-ktg~sdpyvt~qv--~ktkrrtrti~~~lnpvw~ekfhfechnst----drikvrvwded 365 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKD-KTGKSDPYVTAQV--GKTKRRTRTIHQELNPVWNEKFHFECHNST----DRIKVRVWDED 365 (1283)
T ss_pred cceeeEEeeeecccceecc-cCCCCCCcEEEee--cccchhhHhhhhccchhhhhheeeeecCCC----ceeEEEEecCc
Confidence 4678899999999999999 8999999999999 777999999999999999999999744322 34666666332
Q ss_pred cCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 392 RYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 392 ~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
. |....++- .=.-.+|||+|+..|.+..+.
T Consensus 366 ~----dlksklrq----kl~resddflgqtvievrtls 395 (1283)
T KOG1011|consen 366 N----DLKSKLRQ----KLTRESDDFLGQTVIEVRTLS 395 (1283)
T ss_pred c----cHHHHHHH----HhhhcccccccceeEEEEecc
Confidence 1 11000000 001146899999999887775
No 219
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.75 E-value=3e-08 Score=109.69 Aligned_cols=113 Identities=17% Similarity=0.183 Sum_probs=86.6
Q ss_pred ccEEEEEEEeecCCCCC------CCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEE
Q psy1415 499 ANRFTIVVLKARNLPKM------DVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLEL 572 (622)
Q Consensus 499 ~g~L~V~I~~A~~L~~~------d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i 572 (622)
...|.|.|+.+.+++.. +.....||||+|.+.+-+....+++|++..++.||.|||.|.|++..+++. .|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELA--llRf 545 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELA--LLRV 545 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCcee--EEEE
Confidence 35799999999987522 223346999999997643333467888888999999999999999887776 4999
Q ss_pred EEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCce
Q psy1415 573 LLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQI 615 (622)
Q Consensus 573 ~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i 615 (622)
.|+|+|..++++|+|+..|++. ...+++. .-.|++.-|..+
T Consensus 546 ~V~d~d~~~~ddfiGQ~~lPv~-~Lr~GyR-~V~L~~~~G~~l 586 (598)
T PLN02230 546 EVHEHDINEKDDFGGQTCLPVS-EIRQGIH-AVPLFNRKGVKY 586 (598)
T ss_pred EEEECCCCCCCCEEEEEEcchH-HhhCccc-eEeccCCCcCCC
Confidence 9999999889999999999995 4444443 346666666554
No 220
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.73 E-value=4.5e-08 Score=108.18 Aligned_cols=113 Identities=16% Similarity=0.149 Sum_probs=84.9
Q ss_pred ccEEEEEEEeecCCC--CC----CCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEE
Q psy1415 499 ANRFTIVVLKARNLP--KM----DVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLEL 572 (622)
Q Consensus 499 ~g~L~V~I~~A~~L~--~~----d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i 572 (622)
...|.|.|+.+.+++ .. +.....||||+|.+.+-.....+++|+++.++.||.|||.|.|.+..+++. .|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLA--llRf 528 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELA--LLRL 528 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCcee--EEEE
Confidence 357999999998753 11 123456999999996432223467899999999999999999999887775 4999
Q ss_pred EEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCce
Q psy1415 573 LLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQI 615 (622)
Q Consensus 573 ~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i 615 (622)
.|||+|..+.++|+|+..|++. ...+++. .-.|.+.-|..+
T Consensus 529 ~V~d~D~~~~ddfigq~~lPv~-~Lr~GyR-~V~L~~~~g~~l 569 (581)
T PLN02222 529 EVHEYDMSEKDDFGGQTCLPVW-ELSQGIR-AFPLHSRKGEKY 569 (581)
T ss_pred EEEECCCCCCCcEEEEEEcchh-hhhCccc-eEEccCCCcCCC
Confidence 9999998888999999999995 4444443 335555555543
No 221
>KOG1031|consensus
Probab=98.72 E-value=2.6e-08 Score=105.45 Aligned_cols=109 Identities=30% Similarity=0.545 Sum_probs=92.0
Q ss_pred ccEEEEEEEeecCCCCCCC-CCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeee-cEEEEEecCCCCCccEEEEEEEE
Q psy1415 499 ANRFTIVVLKARNLPKMDV-TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYN-ESFVFEVPADNLDSVSLELLLLD 576 (622)
Q Consensus 499 ~g~L~V~I~~A~~L~~~d~-~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wn-e~f~f~v~~~~l~~~~L~i~V~D 576 (622)
.|.|-|.|..||+||.||. ....|.||++++.+. .+||.+..+++||.|| +-|.|.|...++++.+|.|++.|
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~-----t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld 76 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANT-----TFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLD 76 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEeccc-----ceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEec
Confidence 3678999999999999986 456799999999443 6789999999999999 89999999888998899999999
Q ss_pred cCCCCCCceeEEEEECCCCCC-----------CcccchhhhhhcCCC
Q psy1415 577 WDRVTKNEVIGRLDLGGDKSS-----------GTALTHWTDVCNSPR 612 (622)
Q Consensus 577 ~d~~~~d~~LG~v~i~L~~~~-----------~~~~~~W~~L~~~p~ 612 (622)
+|..+.++-||.+.|+++.+- +.-+..|+++++..+
T Consensus 77 ~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih 123 (1169)
T KOG1031|consen 77 HDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH 123 (1169)
T ss_pred ccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc
Confidence 999999999999999997211 244566888777654
No 222
>PLN02223 phosphoinositide phospholipase C
Probab=98.66 E-value=2.1e-07 Score=101.23 Aligned_cols=94 Identities=21% Similarity=0.404 Sum_probs=71.7
Q ss_pred CCEEEEEEEEeeCCCCC-----CCCCCCCCCEEEEEEeC--CC-ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEE
Q psy1415 313 ENVLVVTVIKCRDLFIK-----DTPSGSSDPYVKVHLLP--DK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLH 384 (622)
Q Consensus 313 ~~~L~V~vi~a~~L~~~-----d~~~~~sDPyv~v~l~~--~~-~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~ 384 (622)
...|.|.|+.|.+++.. + ....+||||+|.+.+ .+ ..++|.+..++.||+|||+|.|.+..+ +| ..|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~-~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~P-EL--AlLr 483 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIG-RLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYP-DL--ALIS 483 (537)
T ss_pred ceEEEEEEEEcccccCCcccccC-CCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEcc-Cc--eEEE
Confidence 35789999999987511 2 245689999999842 22 277888888999999999999974333 33 2455
Q ss_pred EEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 385 FVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 385 ~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|.|+ |+|..+++++||+..+|+..+.
T Consensus 484 f~V~-------------------D~D~~~~ddfiGQ~~LPv~~Lr 509 (537)
T PLN02223 484 FEVY-------------------DYEVSTADAFCGQTCLPVSELI 509 (537)
T ss_pred EEEE-------------------ecCCCCCCcEEEEEecchHHhc
Confidence 5555 9988888999999999999997
No 223
>PLN02228 Phosphoinositide phospholipase C
Probab=98.65 E-value=1.1e-07 Score=104.79 Aligned_cols=113 Identities=14% Similarity=0.218 Sum_probs=87.1
Q ss_pred ccEEEEEEEeecCCCC---CC---CCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCee-ecEEEEEecCCCCCccEEE
Q psy1415 499 ANRFTIVVLKARNLPK---MD---VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVY-NESFVFEVPADNLDSVSLE 571 (622)
Q Consensus 499 ~g~L~V~I~~A~~L~~---~d---~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~w-ne~f~f~v~~~~l~~~~L~ 571 (622)
...|+|.|+.|.+|+. .+ .....||||++.+.+......+++|+++.++.||.| |+.|.|.+..+++. .|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA--~lR 507 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELA--LLW 507 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCcee--EEE
Confidence 3479999999998732 11 223479999999965333334678999988899999 99999999887766 489
Q ss_pred EEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCCce
Q psy1415 572 LLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQI 615 (622)
Q Consensus 572 i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i 615 (622)
|.|+|+|..+.++|+|+..|+++ ...+++.| ..|++..|..+
T Consensus 508 f~V~D~d~~~~d~figq~~lPv~-~Lr~GYR~-VpL~~~~G~~l 549 (567)
T PLN02228 508 FKVQDYDNDTQNDFAGQTCLPLP-ELKSGVRA-VRLHDRAGKAY 549 (567)
T ss_pred EEEEeCCCCCCCCEEEEEEcchh-HhhCCeeE-EEccCCCCCCC
Confidence 99999998889999999999995 44555543 37777776654
No 224
>KOG0169|consensus
Probab=98.64 E-value=5.4e-08 Score=107.67 Aligned_cols=109 Identities=21% Similarity=0.315 Sum_probs=84.1
Q ss_pred EEEEEEEeecCCCCCCC----CCCCCcEEEEEEEeCCeEeeEeeee-eccCCCCCeeecEEEEEecCCCCCccEEEEEEE
Q psy1415 501 RFTIVVLKARNLPKMDV----TGLADPYVKVYLLYKGQRVAKKKTH-VKKRTLNPVYNESFVFEVPADNLDSVSLELLLL 575 (622)
Q Consensus 501 ~L~V~I~~A~~L~~~d~----~g~sDPyV~v~l~~~~~~~~~~kT~-~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~ 575 (622)
.|.|.|+.+.++++... ...+||||.|.+-+-.....+.+|+ +..++.||.|+|.|+|.+.-+++.- |.|.|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAl--iRF~V~ 694 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELAL--IRFEVH 694 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeE--EEEEEE
Confidence 69999999997755432 3567999999986543444577898 5557899999999999999888874 999999
Q ss_pred EcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCC
Q psy1415 576 DWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRR 613 (622)
Q Consensus 576 D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~ 613 (622)
|+|..++|+|+|+..||+. ...+++.|= .|++.-|.
T Consensus 695 d~d~~~~ddF~GQ~tlP~~-~L~~GyRhV-pL~~~~G~ 730 (746)
T KOG0169|consen 695 DYDYIGKDDFIGQTTLPVS-ELRQGYRHV-PLLSREGE 730 (746)
T ss_pred ecCCCCcccccceeeccHH-HhhCceeee-eecCCCCc
Confidence 9999999999999999985 445555442 34444443
No 225
>PLN02952 phosphoinositide phospholipase C
Probab=98.59 E-value=3.4e-07 Score=101.64 Aligned_cols=94 Identities=26% Similarity=0.416 Sum_probs=71.6
Q ss_pred CCEEEEEEEEeeCCCCC------CCCCCCCCCEEEEEEeC--C-CceeEeeeecCCCCCeeeceeEEcccCcccCCCcEE
Q psy1415 313 ENVLVVTVIKCRDLFIK------DTPSGSSDPYVKVHLLP--D-KQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTL 383 (622)
Q Consensus 313 ~~~L~V~vi~a~~L~~~------d~~~~~sDPyv~v~l~~--~-~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L 383 (622)
...|.|.|+.|.+|+.. + ....+||||+|.+.. . ...++|+++.++.||+|+|+|.|. +...++ ..+
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~-~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~-i~~PEL--All 544 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFD-SYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFP-LTVPEL--ALL 544 (599)
T ss_pred cceEEEEEEECcccCCCCccccCC-ccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEE-EEcCCc--cEE
Confidence 35799999999887531 1 234569999999853 1 237899999999999999999997 333333 235
Q ss_pred EEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 384 HFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 384 ~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
+|.|+ |+|..+.++++|+..+++..|.
T Consensus 545 rf~V~-------------------D~D~~~~ddfiGq~~lPv~~Lr 571 (599)
T PLN02952 545 RIEVR-------------------EYDMSEKDDFGGQTCLPVSELR 571 (599)
T ss_pred EEEEE-------------------ecCCCCCCCeEEEEEcchhHhc
Confidence 55555 9988888999999999999997
No 226
>PLN02270 phospholipase D alpha
Probab=98.54 E-value=1.8e-07 Score=105.68 Aligned_cols=110 Identities=16% Similarity=0.275 Sum_probs=89.2
Q ss_pred cEEEEEEEeecCCCCCC------------------CCCCCCcEEEEEEEeCCeEeeEeeeeeccCC-CCCeeecEEEEEe
Q psy1415 500 NRFTIVVLKARNLPKMD------------------VTGLADPYVKVYLLYKGQRVAKKKTHVKKRT-LNPVYNESFVFEV 560 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~d------------------~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~t-lnP~wne~f~f~v 560 (622)
|.|.++|++|++|++++ ..+.+||||.+.+ ++.. .-||+++.+. .||.|||.|.+++
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~--~~a~--v~rtr~~~~~~~~p~w~e~f~i~~ 83 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDL--EKAR--VGRTRKIENEPKNPRWYESFHIYC 83 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEe--CCcE--EEEEeecCCCCCCCccccceEEee
Confidence 78999999999998742 1356799999999 3333 5699999884 6999999999998
Q ss_pred cCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCC-CCcccchhhhhhcCCCCceee
Q psy1415 561 PADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKS-SGTALTHWTDVCNSPRRQIAE 617 (622)
Q Consensus 561 ~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~-~~~~~~~W~~L~~~p~~~i~~ 617 (622)
.... ..|+|+|.|.+.++ ..+||.+.|+..++ .+...+.|+++++.-++.+..
T Consensus 84 ah~~---~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~ 137 (808)
T PLN02270 84 AHMA---SNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHG 137 (808)
T ss_pred ccCc---ceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCC
Confidence 7543 24999999999887 45999999998764 467899999999998877643
No 227
>KOG1264|consensus
Probab=98.50 E-value=3.2e-07 Score=100.89 Aligned_cols=92 Identities=27% Similarity=0.448 Sum_probs=75.8
Q ss_pred cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeE-eeeeeccCCCCCeee-cEEEEEecCCCCCccEEEEEEEEc
Q psy1415 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAK-KKTHVKKRTLNPVYN-ESFVFEVPADNLDSVSLELLLLDW 577 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~-~kT~~~~~tlnP~wn-e~f~f~v~~~~l~~~~L~i~V~D~ 577 (622)
-.|.|.|+.||+|+... .|...|||.|++.+......+ ++|.+..+.+||+|| +.|+|.|..+++. -|.|.|+|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A--~lRF~V~ee 1141 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFA--FLRFVVYEE 1141 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceE--EEEEEEecc
Confidence 36899999999998443 456679999999774433334 455666688999999 9999999988766 499999999
Q ss_pred CCCCCCceeEEEEECCC
Q psy1415 578 DRVTKNEVIGRLDLGGD 594 (622)
Q Consensus 578 d~~~~d~~LG~v~i~L~ 594 (622)
|+++...|||++..|+.
T Consensus 1142 Dmfs~~~FiaqA~yPv~ 1158 (1267)
T KOG1264|consen 1142 DMFSDPNFLAQATYPVK 1158 (1267)
T ss_pred cccCCcceeeeeecchh
Confidence 99999999999999985
No 228
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.47 E-value=9.7e-07 Score=97.91 Aligned_cols=94 Identities=24% Similarity=0.350 Sum_probs=72.3
Q ss_pred CCEEEEEEEEeeCCCCC------CCCCCCCCCEEEEEEeC--CCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEE
Q psy1415 313 ENVLVVTVIKCRDLFIK------DTPSGSSDPYVKVHLLP--DKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTL 383 (622)
Q Consensus 313 ~~~L~V~vi~a~~L~~~------d~~~~~sDPyv~v~l~~--~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L 383 (622)
...|.|.|+.|.+++.. + ....+||||+|.+.. .+. ..+|++..++.||+|||+|.|.+. ..+| ..|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~-~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~-vPEL--All 543 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFD-SYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLA-VPEL--ALL 543 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCC-CCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEE-cCce--eEE
Confidence 46799999999987421 2 234679999999853 222 789999999999999999999733 3343 345
Q ss_pred EEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 384 HFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 384 ~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
+|.|+ |+|...+++|+|+..+++..|.
T Consensus 544 Rf~V~-------------------d~d~~~~ddfiGQ~~lPv~~Lr 570 (598)
T PLN02230 544 RVEVH-------------------EHDINEKDDFGGQTCLPVSEIR 570 (598)
T ss_pred EEEEE-------------------ECCCCCCCCEEEEEEcchHHhh
Confidence 55555 8888889999999999999997
No 229
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.46 E-value=1.8e-07 Score=76.14 Aligned_cols=100 Identities=25% Similarity=0.387 Sum_probs=80.1
Q ss_pred EEEEeecCCCCCCCCCC-CCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCCC
Q psy1415 504 IVVLKARNLPKMDVTGL-ADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTK 582 (622)
Q Consensus 504 V~I~~A~~L~~~d~~g~-sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~ 582 (622)
++++.++||.-....|. ...|++-.+.-+ +-...||.......||.|.|+|.|.+...++.++.|.|+|+. ...+
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~--kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R 78 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLP--KPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR 78 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecC--CCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence 67888999965543332 344776655322 123678999999999999999999999999999999999998 4568
Q ss_pred CceeEEEEECCCCCCCcccchhhhh
Q psy1415 583 NEVIGRLDLGGDKSSGTALTHWTDV 607 (622)
Q Consensus 583 d~~LG~v~i~L~~~~~~~~~~W~~L 607 (622)
.+.||.+.+++++...++..||.++
T Consensus 79 Ke~iG~~sL~l~s~geeE~~HW~e~ 103 (103)
T cd08684 79 KRTIGECSLSLRTLSTQETDHWLEI 103 (103)
T ss_pred cceeeEEEeecccCCHHHhhhhhcC
Confidence 8999999999998889999999864
No 230
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.45 E-value=1.7e-06 Score=95.79 Aligned_cols=95 Identities=22% Similarity=0.349 Sum_probs=71.5
Q ss_pred CCEEEEEEEEeeCCC----CCC-CCCCCCCCEEEEEEe--CCC-ceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEE
Q psy1415 313 ENVLVVTVIKCRDLF----IKD-TPSGSSDPYVKVHLL--PDK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLH 384 (622)
Q Consensus 313 ~~~L~V~vi~a~~L~----~~d-~~~~~sDPyv~v~l~--~~~-~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~ 384 (622)
...|.|.|+.|.+++ ... ......||||+|.+. +.+ .+++|+++.++.||+|+|+|.|.+. ..+| ..|+
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~-~PeL--AllR 527 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLT-VPEL--ALLR 527 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEE-cCce--eEEE
Confidence 357899999998753 111 023567999999984 222 3789999999999999999999733 3333 3455
Q ss_pred EEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 385 FVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 385 ~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|.|+ |+|..+.+++||+..+++..|.
T Consensus 528 f~V~-------------------d~D~~~~ddfigq~~lPv~~Lr 553 (581)
T PLN02222 528 LEVH-------------------EYDMSEKDDFGGQTCLPVWELS 553 (581)
T ss_pred EEEE-------------------ECCCCCCCcEEEEEEcchhhhh
Confidence 5555 8888888999999999999997
No 231
>KOG1031|consensus
Probab=98.41 E-value=3.8e-07 Score=96.82 Aligned_cols=94 Identities=27% Similarity=0.456 Sum_probs=82.5
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeec-eeEEcccCcccCCCcEEEEEEEeecc
Q psy1415 314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNE-EFTFTGITPHQLKGSTLHFVVFSFDR 392 (622)
Q Consensus 314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e-~f~f~~~~~~~l~~~~L~~~V~d~d~ 392 (622)
|.|-|.|..||+|+-+|......|.||++.+ .+..+||.|-.+++||.||. -|.|. ++..+|++..|.|.+.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~--~n~t~ktdvf~kslnp~wnsdwfkfe-vddadlqdeplqi~ll---- 75 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKF--ANTTFKTDVFLKSLNPQWNSDWFKFE-VDDADLQDEPLQIRLL---- 75 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEe--cccceehhhhhhhcCCcccccceEEe-cChhhhccCCeeEEEe----
Confidence 5688899999999999866677899999999 77799999999999999995 57776 7888888877777777
Q ss_pred CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|+|.++.+|-||.+.|+++-+.
T Consensus 76 ---------------d~dtysandaigkv~i~idpl~ 97 (1169)
T KOG1031|consen 76 ---------------DHDTYSANDAIGKVNIDIDPLC 97 (1169)
T ss_pred ---------------cccccccccccceeeeccChHH
Confidence 9999999999999999998775
No 232
>PLN02228 Phosphoinositide phospholipase C
Probab=98.40 E-value=3e-06 Score=93.69 Aligned_cols=95 Identities=21% Similarity=0.311 Sum_probs=71.5
Q ss_pred CCEEEEEEEEeeCCCC---CC--CCCCCCCCEEEEEEeCC--C-ceeEeeeecCCCCCee-eceeEEcccCcccCCCcEE
Q psy1415 313 ENVLVVTVIKCRDLFI---KD--TPSGSSDPYVKVHLLPD--K-QKVKTRVLRKTRNPIY-NEEFTFTGITPHQLKGSTL 383 (622)
Q Consensus 313 ~~~L~V~vi~a~~L~~---~d--~~~~~sDPyv~v~l~~~--~-~~~kT~vi~~t~nP~W-~e~f~f~~~~~~~l~~~~L 383 (622)
...|.|+|+.|.+|+. .+ ......||||+|.+.+- + ..++|+++.++.||+| +|+|.|.+. ..+| ..|
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~-~pEL--A~l 506 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLR-VPEL--ALL 506 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEE-cCce--eEE
Confidence 3479999999998731 11 02345899999998532 2 2789999999999999 999999733 3333 345
Q ss_pred EEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 384 HFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 384 ~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
+|.|+ |+|..+.+++||+..++++.|.
T Consensus 507 Rf~V~-------------------D~d~~~~d~figq~~lPv~~Lr 533 (567)
T PLN02228 507 WFKVQ-------------------DYDNDTQNDFAGQTCLPLPELK 533 (567)
T ss_pred EEEEE-------------------eCCCCCCCCEEEEEEcchhHhh
Confidence 56655 8888888999999999999996
No 233
>KOG2060|consensus
Probab=98.39 E-value=3.3e-07 Score=93.58 Aligned_cols=122 Identities=27% Similarity=0.477 Sum_probs=98.6
Q ss_pred CCCCceeeeccccCCccEEEEEEEeecCCCCCCC-CCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecC
Q psy1415 484 QGRGEILLSLCWQPAANRFTIVVLKARNLPKMDV-TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 562 (622)
Q Consensus 484 ~~~G~l~i~l~~~~~~g~L~V~I~~A~~L~~~d~-~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~ 562 (622)
...|.+++.+. ...|.+.|.|++|++|..... .-.++|||+|+++.++....+.+|+...+|+.|.|-+...|.-.
T Consensus 255 P~mg~iq~~~~--d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s- 331 (405)
T KOG2060|consen 255 PNMGDIQIALM--DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS- 331 (405)
T ss_pred cccccchhhhh--cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-
Confidence 34566666553 356899999999999976543 33679999999999998888999999999999999988877643
Q ss_pred CCCCccEEEEEEE-EcCCCCCCceeEEEEECCCCCC--CcccchhhhhhcC
Q psy1415 563 DNLDSVSLELLLL-DWDRVTKNEVIGRLDLGGDKSS--GTALTHWTDVCNS 610 (622)
Q Consensus 563 ~~l~~~~L~i~V~-D~d~~~~d~~LG~v~i~L~~~~--~~~~~~W~~L~~~ 610 (622)
.....|.++|| |+.++.++.|+|.++|-+.++. ......||+|++.
T Consensus 332 --p~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 332 --PPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred --CCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 34667999999 7888889999999999987543 4578899999876
No 234
>PLN02270 phospholipase D alpha
Probab=98.38 E-value=4.3e-06 Score=94.80 Aligned_cols=91 Identities=20% Similarity=0.328 Sum_probs=71.6
Q ss_pred CCEEEEEEEEeeCCCCCC-----------------CCCCCCCCEEEEEEeCCCc-eeEeeeecCC-CCCeeeceeEEccc
Q psy1415 313 ENVLVVTVIKCRDLFIKD-----------------TPSGSSDPYVKVHLLPDKQ-KVKTRVLRKT-RNPIYNEEFTFTGI 373 (622)
Q Consensus 313 ~~~L~V~vi~a~~L~~~d-----------------~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t-~nP~W~e~f~f~~~ 373 (622)
.|.|.++|++|++|++++ ...+.+||||.|.+ ++. +.||+++.+. .||.|+|.|...+-
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~--~~a~v~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDL--EKARVGRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEe--CCcEEEEEeecCCCCCCCccccceEEeec
Confidence 478999999999998631 01356899999999 554 9999999885 59999999987633
Q ss_pred CcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 374 TPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 374 ~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
... ..+.|.|. |.+.++ ..+||.+.++..++.
T Consensus 85 h~~----~~v~f~vk-------------------d~~~~g-~~~ig~~~~p~~~~~ 116 (808)
T PLN02270 85 HMA----SNIIFTVK-------------------DDNPIG-ATLIGRAYIPVEEIL 116 (808)
T ss_pred cCc----ceEEEEEe-------------------cCCccC-ceEEEEEEEEHHHhc
Confidence 322 46889998 666665 459999999999987
No 235
>KOG0169|consensus
Probab=98.36 E-value=2e-06 Score=95.56 Aligned_cols=94 Identities=27% Similarity=0.449 Sum_probs=72.1
Q ss_pred CEEEEEEEEeeCCCCCCC---CCCCCCCEEEEEEe--CCCc-eeEee-eecCCCCCeeeceeEEcccCcccCCCcEEEEE
Q psy1415 314 NVLVVTVIKCRDLFIKDT---PSGSSDPYVKVHLL--PDKQ-KVKTR-VLRKTRNPIYNEEFTFTGITPHQLKGSTLHFV 386 (622)
Q Consensus 314 ~~L~V~vi~a~~L~~~d~---~~~~sDPyv~v~l~--~~~~-~~kT~-vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~ 386 (622)
..|.|.|+.|.++..... .+..+||||.|.+. |.+. ..+|+ +..++-||.|+|+|+|. +...+|. -|+|.
T Consensus 616 ~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~-l~vPELA--liRF~ 692 (746)
T KOG0169|consen 616 KTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQ-LSVPELA--LIRFE 692 (746)
T ss_pred ceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEE-Eecccee--EEEEE
Confidence 369999999997754321 22458999999863 2333 88999 55688899999999998 5555553 35555
Q ss_pred EEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 387 VFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 387 V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|+ |+|..++|+|+|+..+|+..|.
T Consensus 693 V~-------------------d~d~~~~ddF~GQ~tlP~~~L~ 716 (746)
T KOG0169|consen 693 VH-------------------DYDYIGKDDFIGQTTLPVSELR 716 (746)
T ss_pred EE-------------------ecCCCCcccccceeeccHHHhh
Confidence 55 9999999999999999999997
No 236
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.29 E-value=2.6e-06 Score=72.64 Aligned_cols=83 Identities=20% Similarity=0.302 Sum_probs=63.1
Q ss_pred EEEEEEeecCCCCCC---CCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcC
Q psy1415 502 FTIVVLKARNLPKMD---VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD 578 (622)
Q Consensus 502 L~V~I~~A~~L~~~d---~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d 578 (622)
|.|.|..|+|+...+ ..+..||||.+++ ++.. +.||++ +.||.|||.|.|+|. . ...+.|.|||..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKv--ed~~--kaRTr~---srnd~WnE~F~i~Vd--k--~nEiel~VyDk~ 69 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKV--EDVE--RARTKP---SRNDRWNEDFEIPVE--K--NNEEEVIVYDKG 69 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEE--CCEE--EEeccC---CCCCcccceEEEEec--C--CcEEEEEEEeCC
Confidence 578999999998777 5788899999999 4333 667755 589999999999994 2 335999999974
Q ss_pred CCCCCceeEEEEECCCCC
Q psy1415 579 RVTKNEVIGRLDLGGDKS 596 (622)
Q Consensus 579 ~~~~d~~LG~v~i~L~~~ 596 (622)
. ...-.+|..=+.|+++
T Consensus 70 ~-~~~~Pi~llW~~~sdi 86 (109)
T cd08689 70 G-DQPVPVGLLWLRLSDI 86 (109)
T ss_pred C-CeecceeeehhhHHHH
Confidence 3 3445678777777643
No 237
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.29 E-value=1.4e-06 Score=71.10 Aligned_cols=91 Identities=25% Similarity=0.401 Sum_probs=70.7
Q ss_pred EEEEEEeeCCCCCCCCCCCCCCEEEEEEe-CCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCC
Q psy1415 317 VVTVIKCRDLFIKDTPSGSSDPYVKVHLL-PDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSR 395 (622)
Q Consensus 317 ~V~vi~a~~L~~~d~~~~~sDPyv~v~l~-~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~ 395 (622)
.+++++|++|.-...-...+.-|++=-+. |..-.+||++.++..||+|+|+|.|. +...+|+...|.|+|+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFq-i~l~qL~~V~L~fsv~------- 73 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFA-IKLQNLQTVRLVFKIQ------- 73 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHH-HHHhhccceEEEEEee-------
Confidence 47899999996543122223345543332 23338899999999999999999998 8899999999999999
Q ss_pred CCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 396 DDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 396 ~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
+ .+.+.+.||+|.++++++-
T Consensus 74 ------------~--~~~RKe~iG~~sL~l~s~g 93 (103)
T cd08684 74 ------------T--QTPRKRTIGECSLSLRTLS 93 (103)
T ss_pred ------------c--cCCccceeeEEEeecccCC
Confidence 4 6778999999999999875
No 238
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.25 E-value=2.8e-06 Score=72.47 Aligned_cols=84 Identities=20% Similarity=0.383 Sum_probs=64.1
Q ss_pred EEEEEEEeeCCCCCCC--CCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeecc
Q psy1415 316 LVVTVIKCRDLFIKDT--PSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDR 392 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~--~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~ 392 (622)
|.|+|..++|+...+. +++.+||||.+++ ++. +.||++ +.||.|||+|.|. +.. ...+.+.||
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKv--ed~~kaRTr~---srnd~WnE~F~i~-Vdk----~nEiel~Vy---- 66 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKV--EDVERARTKP---SRNDRWNEDFEIP-VEK----NNEEEVIVY---- 66 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEE--CCEEEEeccC---CCCCcccceEEEE-ecC----CcEEEEEEE----
Confidence 5788999999987652 3678999999999 665 889988 4799999999997 332 235666666
Q ss_pred CCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 393 YSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 393 ~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|... ...-.||-..+.+++|.
T Consensus 67 ---------------Dk~~-~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 67 ---------------DKGG-DQPVPVGLLWLRLSDIA 87 (109)
T ss_pred ---------------eCCC-CeecceeeehhhHHHHH
Confidence 6532 34468999898888875
No 239
>KOG1264|consensus
Probab=98.12 E-value=9.6e-06 Score=89.60 Aligned_cols=92 Identities=30% Similarity=0.472 Sum_probs=70.6
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeC---CCcee-EeeeecCCCCCeee-ceeEEcccCcccCCCcEEEEEEE
Q psy1415 314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLP---DKQKV-KTRVLRKTRNPIYN-EEFTFTGITPHQLKGSTLHFVVF 388 (622)
Q Consensus 314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~---~~~~~-kT~vi~~t~nP~W~-e~f~f~~~~~~~l~~~~L~~~V~ 388 (622)
-.|.|.|+.||+|+... .+...|||.|.+.+ +..++ +|.|+.|.+||+|+ |.|.|.+..|+ -..|+|.|+
T Consensus 1065 ~~lsv~vigaRHL~k~g--r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe---~A~lRF~V~ 1139 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG--RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPE---FAFLRFVVY 1139 (1267)
T ss_pred eEEEEEEeeccccccCC--CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCc---eEEEEEEEe
Confidence 35788999999999663 55677999999753 22344 55566899999999 99999855544 245666666
Q ss_pred eeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 389 SFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 389 d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|.|.++...|||++.+|+..+.
T Consensus 1140 -------------------eeDmfs~~~FiaqA~yPv~~ik 1161 (1267)
T KOG1264|consen 1140 -------------------EEDMFSDPNFLAQATYPVKAIK 1161 (1267)
T ss_pred -------------------cccccCCcceeeeeecchhhhh
Confidence 8888887789999999999886
No 240
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.83 E-value=1.1e-05 Score=70.84 Aligned_cols=105 Identities=16% Similarity=0.282 Sum_probs=74.3
Q ss_pred EEEEEEeecCCCCCCC-------------CCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecC------
Q psy1415 502 FTIVVLKARNLPKMDV-------------TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA------ 562 (622)
Q Consensus 502 L~V~I~~A~~L~~~d~-------------~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~------ 562 (622)
|.|.|++|.+|+..-. .-..++||++.+..-.+ ....+|+++.++.-|.|+..+.|+++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~-~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPE-KELRRTRTVARSFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCC-CceeeccchhhhcCCCccceEEEecccEEEcCC
Confidence 4678889888854321 12259999999643111 136689999999999999999999762
Q ss_pred -------CCCCccEEEEEEEEcCCC----------CCCceeEEEEECCCCCC--Ccccchhhhh
Q psy1415 563 -------DNLDSVSLELLLLDWDRV----------TKNEVIGRLDLGGDKSS--GTALTHWTDV 607 (622)
Q Consensus 563 -------~~l~~~~L~i~V~D~d~~----------~~d~~LG~v~i~L~~~~--~~~~~~W~~L 607 (622)
+-+....|.|+||+.... .+|-.||.+.||+.++. ..++..||++
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 123345699999986542 24668999999997644 4777778764
No 241
>KOG2060|consensus
Probab=97.75 E-value=3.8e-05 Score=78.85 Aligned_cols=96 Identities=29% Similarity=0.482 Sum_probs=79.0
Q ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEE
Q psy1415 312 KENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVF 388 (622)
Q Consensus 312 ~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~ 388 (622)
..+.+.|.+++|++|..+......++|||+||+++++. +.+|+...+|.+|-|-....|. -+ .....|.+.||
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~-~s---p~~k~Lq~tv~ 342 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFD-QS---PPGKYLQGTVW 342 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhc-cC---CCccEEEEEEe
Confidence 56899999999999987753344689999999987776 7899999999999999888775 22 33567888888
Q ss_pred eeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 389 SFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 389 d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
+ |+.++..+.|+|.+.+-+.++.
T Consensus 343 -------g-----------dygRmd~k~fmg~aqi~l~eL~ 365 (405)
T KOG2060|consen 343 -------G-----------DYGRMDHKSFMGVAQIMLDELN 365 (405)
T ss_pred -------c-----------cccccchHHHhhHHHHHhhhhc
Confidence 2 7778888899999999998886
No 242
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.69 E-value=0.0027 Score=66.51 Aligned_cols=251 Identities=15% Similarity=0.158 Sum_probs=150.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCC
Q psy1415 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSR 395 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~ 395 (622)
+.+.|++|+|++... ...-.+..++ ++....|..+..+..|.|+....+. .+...+.. +
T Consensus 2 ivl~i~egr~F~~~~----~~~~vv~a~~--ng~~l~TDpv~~~~~p~f~teL~WE-~Dr~~l~~--------------~ 60 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP----RHPIVVEAKF--NGESLETDPVPHTESPQFNTELAWE-CDRKALKQ--------------H 60 (340)
T ss_pred EEEEEecccCCCCCC----CccEEEEEEe--CCceeeecCCCCCCCceeecceeee-ccHHHHHH--------------h
Confidence 578899999998763 2345677778 8889999999999999999988775 55444332 2
Q ss_pred CCCCcceEEEEEecc-CCCCcceeeEEEEeCCcc---ccCCceeeEEEEeeccC--CCCccceeEEEeeecccccCc---
Q psy1415 396 DDIGSTLHFVVFSFD-RYSRDDIVGEVFYSLQSF---ETYGSTLHFVVFSFDRY--SRDDIVGEVFYSLQSFETYGH--- 466 (622)
Q Consensus 396 ~d~~~~l~i~v~d~d-~~~~d~~iG~~~i~l~~l---~~~~~~~~~~~~~l~~~--~~~~~~g~~~~~l~~~~~~~~--- 466 (622)
.....||+++||-.+ ..+..+.||.+.++|..+ ..........|+.+.+. .-.....++.+.+........
T Consensus 61 r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~ 140 (340)
T PF12416_consen 61 RLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTP 140 (340)
T ss_pred hccCCceEEEEEEecCCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCC
Confidence 345677888888988 567889999999999998 43444678899999876 222223344444433222110
Q ss_pred cc-cccccc-Ccccc-------c--------cccCCCCceeeecc-ccCCccEEEEEEEeecCCCCCC----C--CCCCC
Q psy1415 467 SL-SFCRDI-QPRNL-------R--------IKSQGRGEILLSLC-WQPAANRFTIVVLKARNLPKMD----V--TGLAD 522 (622)
Q Consensus 467 ~~-~~~~~~-~~~~~-------~--------~~~~~~G~l~i~l~-~~~~~g~L~V~I~~A~~L~~~d----~--~g~sD 522 (622)
.. ...... .+... . ......|-+.+.-. .-.....|.|++..|.||..+- . .+...
T Consensus 141 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~ 220 (340)
T PF12416_consen 141 DFESFKAKPAPPRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSG 220 (340)
T ss_pred ccccccccCCCcccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCcc
Confidence 00 000000 00000 0 00112232222210 0112346889999999996551 1 12345
Q ss_pred cEEEEEEEeCCeEeeEeeeeeccCCCCCeee--cEEEEEecCCC--CC-----ccEEEEEEEEcCCCCCCceeEEEEECC
Q psy1415 523 PYVKVYLLYKGQRVAKKKTHVKKRTLNPVYN--ESFVFEVPADN--LD-----SVSLELLLLDWDRVTKNEVIGRLDLGG 593 (622)
Q Consensus 523 PyV~v~l~~~~~~~~~~kT~~~~~tlnP~wn--e~f~f~v~~~~--l~-----~~~L~i~V~D~d~~~~d~~LG~v~i~L 593 (622)
-|....+.++ -..+.......+|.|- +...|.|.+.. +. ...|.|.++- .+..||.+.|++
T Consensus 221 f~f~YsllGn-----~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~-----g~~~Lg~~~v~l 290 (340)
T PF12416_consen 221 FFFYYSLLGN-----DVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC-----GNQSLGSTSVPL 290 (340)
T ss_pred EEEEEEecCc-----EeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee-----CCcEEEEEEEEh
Confidence 5666666554 2246667777888764 44446665431 10 2237776666 366899999999
Q ss_pred CCCC
Q psy1415 594 DKSS 597 (622)
Q Consensus 594 ~~~~ 597 (622)
....
T Consensus 291 ~~Ll 294 (340)
T PF12416_consen 291 QPLL 294 (340)
T ss_pred hhcc
Confidence 7554
No 243
>PLN02352 phospholipase D epsilon
Probab=97.56 E-value=0.00014 Score=82.67 Aligned_cols=104 Identities=13% Similarity=0.229 Sum_probs=75.4
Q ss_pred cEEEEEEEeecCCCCC----CC-CCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEE
Q psy1415 500 NRFTIVVLKARNLPKM----DV-TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLL 574 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~----d~-~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V 574 (622)
|.|.++|++|+-+... +. ....||||.+.+ ++.. ..|| .+.-||.|||.|.+++.... +..|+|+|
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~--~~~~--v~rt---~~~~~p~w~e~f~i~~ah~~--~~~~~f~v 80 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKI--GNKK--VAKT---SHEYDRVWNQTFQILCAHPL--DSTITITL 80 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEe--CCcE--EecC---CCCCCCccccceeEEeeeec--CCcEEEEE
Confidence 6788999998733221 11 122399999999 4333 4466 55569999999999987442 22499999
Q ss_pred EEcCCCCCCceeEEEEECCCCCC-Ccc-cchhhhhhcCCCCceee
Q psy1415 575 LDWDRVTKNEVIGRLDLGGDKSS-GTA-LTHWTDVCNSPRRQIAE 617 (622)
Q Consensus 575 ~D~d~~~~d~~LG~v~i~L~~~~-~~~-~~~W~~L~~~p~~~i~~ 617 (622)
.| ...+||.+.|+...+. +.. .+.|+++++.-++.+..
T Consensus 81 k~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~ 120 (758)
T PLN02352 81 KT-----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE 120 (758)
T ss_pred ec-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC
Confidence 88 3779999999987654 434 89999999998887744
No 244
>PLN02964 phosphatidylserine decarboxylase
Probab=97.28 E-value=0.00038 Score=78.51 Aligned_cols=98 Identities=14% Similarity=0.198 Sum_probs=77.0
Q ss_pred cCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEE
Q psy1415 496 QPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLL 575 (622)
Q Consensus 496 ~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~ 575 (622)
.+-.|.+.+++++|+ |+. .|||+.+... |.+ .+||.+.++|+||+||+...|.|......- ..|.||
T Consensus 50 ~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~--g~~--~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~ 116 (644)
T PLN02964 50 EDFSGIALLTLVGAE----MKF---KDKWLACVSF--GEQ--TFRTETSDSTDKPVWNSEKKLLLEKNGPHL--ARISVF 116 (644)
T ss_pred ccccCeEEEEeehhh----hcc---CCcEEEEEEe--cce--eeeeccccccCCcccchhhceEeccCCcce--EEEEEE
Confidence 345688999999988 443 5998776542 333 789999999999999999999988766553 699999
Q ss_pred EcCCCCCCceeEEEEECCCCCCCcccchhhh
Q psy1415 576 DWDRVTKNEVIGRLDLGGDKSSGTALTHWTD 606 (622)
Q Consensus 576 D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~ 606 (622)
|++++++++++|.++++|.+........+++
T Consensus 117 ~~~~~s~n~lv~~~e~~~t~f~~kqi~elke 147 (644)
T PLN02964 117 ETNRLSKNTLVGYCELDLFDFVTQEPESACE 147 (644)
T ss_pred ecCCCCHHHhhhheeecHhhccHHHHHHHHH
Confidence 9999999999999999887666555544443
No 245
>PLN02352 phospholipase D epsilon
Probab=97.27 E-value=0.0023 Score=73.01 Aligned_cols=85 Identities=15% Similarity=0.242 Sum_probs=58.6
Q ss_pred CCEEEEEEEEeeCCCCC----CCCCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEE
Q psy1415 313 ENVLVVTVIKCRDLFIK----DTPSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVV 387 (622)
Q Consensus 313 ~~~L~V~vi~a~~L~~~----d~~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V 387 (622)
.|.|.++|++|+.+... +......|||+.|.+ ++. +.|| .+..||.|+|.|...+-... ...+.|.|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~--~~~~v~rt---~~~~~p~w~e~f~i~~ah~~---~~~~~f~v 80 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKI--GNKKVAKT---SHEYDRVWNQTFQILCAHPL---DSTITITL 80 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEe--CCcEEecC---CCCCCCccccceeEEeeeec---CCcEEEEE
Confidence 35666777777643222 101122399999999 554 8888 66679999999987533222 24588888
Q ss_pred EeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 388 FSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 388 ~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
. | .-.+||.+.++..++.
T Consensus 81 k-------------------~-----~~~~ig~~~~p~~~~~ 98 (758)
T PLN02352 81 K-------------------T-----KCSILGRFHIQAHQIV 98 (758)
T ss_pred e-------------------c-----CCeEEEEEEEEHHHhh
Confidence 8 5 3689999999999987
No 246
>PLN02964 phosphatidylserine decarboxylase
Probab=96.99 E-value=0.00093 Score=75.42 Aligned_cols=88 Identities=18% Similarity=0.321 Sum_probs=67.3
Q ss_pred ECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEE-EEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEE
Q psy1415 310 QEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKV-HLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVF 388 (622)
Q Consensus 310 ~~~~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v-~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~ 388 (622)
.+-.|++.+++++|+ ++ + .|||+.+ ++ |.+++||.+.++|.||+||+...|. +.+.+..- .+|.|+
T Consensus 50 ~~~~~~~~~~~~~~~----~~--~--~~~~~~~~~~--g~~~f~t~~~~~~~~p~~~~~~~~~-~~~~~~~~--~~~~~~ 116 (644)
T PLN02964 50 EDFSGIALLTLVGAE----MK--F--KDKWLACVSF--GEQTFRTETSDSTDKPVWNSEKKLL-LEKNGPHL--ARISVF 116 (644)
T ss_pred ccccCeEEEEeehhh----hc--c--CCcEEEEEEe--cceeeeeccccccCCcccchhhceE-eccCCcce--EEEEEE
Confidence 345788999999988 54 2 4888555 46 7789999999999999999988886 55555432 466666
Q ss_pred eeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 389 SFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 389 d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|++++..++++|.+++++.++.
T Consensus 117 -------------------~~~~~s~n~lv~~~e~~~t~f~ 138 (644)
T PLN02964 117 -------------------ETNRLSKNTLVGYCELDLFDFV 138 (644)
T ss_pred -------------------ecCCCCHHHhhhheeecHhhcc
Confidence 8888888888888888776665
No 247
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.92 E-value=0.0069 Score=56.66 Aligned_cols=94 Identities=16% Similarity=0.156 Sum_probs=68.3
Q ss_pred cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeE-eeeeeccCCCCCeeecEEEEEecCCCCC-ccEEEEEEEEc
Q psy1415 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAK-KKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDW 577 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~-~kT~~~~~tlnP~wne~f~f~v~~~~l~-~~~L~i~V~D~ 577 (622)
..++|.|+.++++... ..+|-||++.+-.++..... ..|..+.. .++.|||-+.|+|.-.++. +..|.|+||+.
T Consensus 8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 3588999999998754 34688999988776655432 23443433 6799999999998877755 56699999997
Q ss_pred CCCC----CCceeEEEEECCCCCC
Q psy1415 578 DRVT----KNEVIGRLDLGGDKSS 597 (622)
Q Consensus 578 d~~~----~d~~LG~v~i~L~~~~ 597 (622)
...+ ....||.+.++|.+..
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~~ 107 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDYT 107 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECCC
Confidence 5421 2356999999998644
No 248
>KOG1003|consensus
Probab=96.91 E-value=0.00015 Score=67.91 Aligned_cols=84 Identities=23% Similarity=0.313 Sum_probs=69.0
Q ss_pred ccceeccccccCCccccccccccC---------------------CChh---hhh----cCCCCCccCcccchhhHHHHH
Q psy1415 49 AKKLALSQMTLKRPTAVRSPAAAG---------------------PNSH---YLK----KSPSPTYATPVANQRVEEYKR 100 (622)
Q Consensus 49 ~~kl~~~e~~l~r~e~~r~~~~e~---------------------~~~~---~l~----~lk~~~~~~~~~~~~e~~~~~ 100 (622)
-|||+.+|.+|+|+++ |+..+.. ++.+ .+. +||.....+++|..+.+....
T Consensus 10 nrri~~leeele~aqE-rl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVar 88 (205)
T KOG1003|consen 10 NRRIQLLEEELDRAQE-RLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVAR 88 (205)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999 9998721 1111 111 677777777888888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1415 101 QIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRL 133 (622)
Q Consensus 101 ~i~~l~~~lkeae~rae~ae~~~~~l~~~~~~l 133 (622)
.+.++...|..+|.|||.||.....|+.++..+
T Consensus 89 kL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~ 121 (205)
T KOG1003|consen 89 KLVIIEGELERAEERAEAAESQSEELEEDLRIL 121 (205)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999887766
No 249
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=96.75 E-value=0.0082 Score=57.14 Aligned_cols=96 Identities=19% Similarity=0.237 Sum_probs=70.1
Q ss_pred cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEee-EeeeeeccCCCCCeeecEEEEEecCCCCC-ccEEEEEEEEc
Q psy1415 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVA-KKKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDW 577 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~-~~kT~~~~~tlnP~wne~f~f~v~~~~l~-~~~L~i~V~D~ 577 (622)
..++|+|+.+.+|.. .....+-||++.+-.++.... ...|..+.-..++.|||.+.|+|.-.++. +..|.|+||+.
T Consensus 8 ~~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 358999999999986 224467788888877666543 23454544456799999999998877655 56699999996
Q ss_pred CCCC----------------CCceeEEEEECCCCCC
Q psy1415 578 DRVT----------------KNEVIGRLDLGGDKSS 597 (622)
Q Consensus 578 d~~~----------------~d~~LG~v~i~L~~~~ 597 (622)
.... ....||.+.++|.+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~ 121 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK 121 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEccc
Confidence 5422 2468999999998644
No 250
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.72 E-value=0.0094 Score=55.79 Aligned_cols=97 Identities=18% Similarity=0.196 Sum_probs=68.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEe-eeeeccCCCCCeeecEEEEEecCCCCC-ccEEEEEEEEcC
Q psy1415 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKK-KTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDWD 578 (622)
Q Consensus 501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~-kT~~~~~tlnP~wne~f~f~v~~~~l~-~~~L~i~V~D~d 578 (622)
.++|.+....++... .....+-||.+.+-.++...... .|.......++.|||.+.|++.-.++. +..|.|+||+.+
T Consensus 9 ~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 577888888877652 12346778888877766543333 333333336899999999998766655 566999999977
Q ss_pred CCC--CCceeEEEEECCCCCCC
Q psy1415 579 RVT--KNEVIGRLDLGGDKSSG 598 (622)
Q Consensus 579 ~~~--~d~~LG~v~i~L~~~~~ 598 (622)
..+ ++..||.+.++|.+..+
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~~~ 109 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDYKG 109 (156)
T ss_pred cCCCCcceEEEEEeEEeEcccC
Confidence 654 56899999999986543
No 251
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=96.38 E-value=0.0023 Score=56.58 Aligned_cols=104 Identities=23% Similarity=0.329 Sum_probs=66.8
Q ss_pred EEEEEEEeeCCCCC-------CC-----CCCCCCCEEEEE--EeCCCceeEeeeecCCCCCeeeceeEEcccCc------
Q psy1415 316 LVVTVIKCRDLFIK-------DT-----PSGSSDPYVKVH--LLPDKQKVKTRVLRKTRNPIYNEEFTFTGITP------ 375 (622)
Q Consensus 316 L~V~vi~a~~L~~~-------d~-----~~~~sDPyv~v~--l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~------ 375 (622)
|.|.|++|.+|+.. +. ..-..++|+++. ++++++..+|+++-++.-|.|+-.++|. .+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efp-c~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFP-CNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEe-cccEEEcCC
Confidence 35677888888632 10 011247899998 4567779999999999999999999996 321
Q ss_pred -------ccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 376 -------HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 376 -------~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
+.|....+.|.||+.+..+..+.. .....+|-++|.+.||+.+|.
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~---------~~~~~~DilLG~v~IPl~~Ll 131 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTI---------KIETSGDILLGTVKIPLRDLL 131 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCcccccee---------ccCcCCcEEEEEEEeeHHHHh
Confidence 122334455555543333222210 011245679999999999997
No 252
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.38 E-value=0.015 Score=54.63 Aligned_cols=79 Identities=16% Similarity=0.165 Sum_probs=60.4
Q ss_pred CCCCcEEEEEEEeCCeEee-EeeeeeccCCCCCeeecEEEEEecCCCCC-ccEEEEEEEEcCCCCCCceeEEEEECCCCC
Q psy1415 519 GLADPYVKVYLLYKGQRVA-KKKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDWDRVTKNEVIGRLDLGGDKS 596 (622)
Q Consensus 519 g~sDPyV~v~l~~~~~~~~-~~kT~~~~~tlnP~wne~f~f~v~~~~l~-~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~ 596 (622)
..+|-||.+.+-.++.... ...|..+.-+..+.|||.+.|+|.-.++. +..|.|+|||.+..++...+|.+.++|.+.
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 4568899998877665432 23555555566788999999999877765 667999999987666778999999999864
Q ss_pred C
Q psy1415 597 S 597 (622)
Q Consensus 597 ~ 597 (622)
.
T Consensus 108 ~ 108 (159)
T cd08397 108 D 108 (159)
T ss_pred C
Confidence 3
No 253
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=96.35 E-value=0.014 Score=55.61 Aligned_cols=98 Identities=20% Similarity=0.205 Sum_probs=71.9
Q ss_pred cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEe-eeeecc----CCCCCeeecEEEEEecCCCCC-ccEEEEE
Q psy1415 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKK-KTHVKK----RTLNPVYNESFVFEVPADNLD-SVSLELL 573 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~-kT~~~~----~tlnP~wne~f~f~v~~~~l~-~~~L~i~ 573 (622)
..+.|+|..+++++........|-||.+.+-.+++..... .|.... ....+.|||.+.|++.-.++. +..|.|+
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 4688999999999887765667899999987776654322 232211 123577999999998766654 5669999
Q ss_pred EEEcCCCC---------CCceeEEEEECCCCCC
Q psy1415 574 LLDWDRVT---------KNEVIGRLDLGGDKSS 597 (622)
Q Consensus 574 V~D~d~~~---------~d~~LG~v~i~L~~~~ 597 (622)
||+....+ .+..||.+.++|.+..
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~ 120 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR 120 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcch
Confidence 99976544 4579999999998644
No 254
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=96.28 E-value=0.028 Score=53.57 Aligned_cols=96 Identities=16% Similarity=0.193 Sum_probs=67.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCC-ccEEEEEEEEcCC
Q psy1415 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDWDR 579 (622)
Q Consensus 501 ~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~-~~~L~i~V~D~d~ 579 (622)
.++|.|..+. .+..+......-||++.+-.++......+|.....+.++.|||-+.|+|.-.++. +..|.|+||+...
T Consensus 11 ~friki~~~~-~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 11 KFRVKILGID-IPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CEEEEEEeec-ccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 5777888876 3333333334567877776665555455677776677899999999998877765 5669999999632
Q ss_pred CC----------------CCceeEEEEECCCCCC
Q psy1415 580 VT----------------KNEVIGRLDLGGDKSS 597 (622)
Q Consensus 580 ~~----------------~d~~LG~v~i~L~~~~ 597 (622)
.+ .+..||-+.+.|.+-.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~ 123 (178)
T cd08399 90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDHR 123 (178)
T ss_pred CcccccccccccccccccccceEEEEEEEEEcCC
Confidence 11 2568999999998544
No 255
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=95.37 E-value=0.062 Score=49.40 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=55.7
Q ss_pred CcEEEEEEEeCCeEee--EeeeeeccCC-CCCeeecEEEEEecCCCCC-ccEEEEEEEEcCCCCCC----ceeEEEEECC
Q psy1415 522 DPYVKVYLLYKGQRVA--KKKTHVKKRT-LNPVYNESFVFEVPADNLD-SVSLELLLLDWDRVTKN----EVIGRLDLGG 593 (622)
Q Consensus 522 DPyV~v~l~~~~~~~~--~~kT~~~~~t-lnP~wne~f~f~v~~~~l~-~~~L~i~V~D~d~~~~d----~~LG~v~i~L 593 (622)
+-||.+.+-.++.... ...|....-+ .++.|||.+.|+|.-.++. +..|.|+||..+..... ..||.+.++|
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 3477787777777655 3356666655 7999999999998766654 56699999997766555 7999999999
Q ss_pred CCCCC
Q psy1415 594 DKSSG 598 (622)
Q Consensus 594 ~~~~~ 598 (622)
.+..+
T Consensus 83 Fd~~~ 87 (142)
T PF00792_consen 83 FDYRG 87 (142)
T ss_dssp B-TTS
T ss_pred ECCCC
Confidence 86543
No 256
>KOG1265|consensus
Probab=94.75 E-value=0.039 Score=62.69 Aligned_cols=85 Identities=26% Similarity=0.399 Sum_probs=64.1
Q ss_pred cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEe--CCeEeeEeeeeecc-CCCCCeee-cEEEEE-ecCCCCCccEEEEEE
Q psy1415 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLY--KGQRVAKKKTHVKK-RTLNPVYN-ESFVFE-VPADNLDSVSLELLL 574 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~--~~~~~~~~kT~~~~-~tlnP~wn-e~f~f~-v~~~~l~~~~L~i~V 574 (622)
+.+.|.|+++.=|..++ +..||.|.+-+ .......+||++.. +++||+|+ +.|.|. |..+++. +|.|.|
T Consensus 703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA--~lRiav 776 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELA--SLRIAV 776 (1189)
T ss_pred eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchh--heeeee
Confidence 57999999999887665 34899999854 22222356777777 56999999 678887 5556665 499999
Q ss_pred EEcCCCCCCceeEEEEECCC
Q psy1415 575 LDWDRVTKNEVIGRLDLGGD 594 (622)
Q Consensus 575 ~D~d~~~~d~~LG~v~i~L~ 594 (622)
|+.. ..+||+-.++++
T Consensus 777 yeEg----gK~ig~RIlpvd 792 (1189)
T KOG1265|consen 777 YEEG----GKFIGQRILPVD 792 (1189)
T ss_pred eccC----Cceeeeeccchh
Confidence 9964 569999999885
No 257
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.64 E-value=0.21 Score=47.62 Aligned_cols=108 Identities=17% Similarity=0.239 Sum_probs=65.6
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc----eeEeeeecCCCCCeeeceeEEcccCcccCC-CcEEEEEEE
Q psy1415 314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ----KVKTRVLRKTRNPIYNEEFTFTGITPHQLK-GSTLHFVVF 388 (622)
Q Consensus 314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~----~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~-~~~L~~~V~ 388 (622)
..++|+++.+.+|... ...++-||++.+..|++ ...|+......++.|+|.+.|. +...+|. ...|.|.||
T Consensus 8 ~~f~i~i~~~~~~~~~---~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~-I~i~dLPr~ArLciti~ 83 (173)
T cd08693 8 EKFSITLHKISNLNAA---ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFD-INVCDLPRMARLCFAIY 83 (173)
T ss_pred CCEEEEEEEeccCccC---CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcc-cchhcCChhHeEEEEEE
Confidence 4688999999999762 23467888888766666 3456655556779999999997 6666654 456778888
Q ss_pred eeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcc
Q psy1415 389 SFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF 428 (622)
Q Consensus 389 d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l 428 (622)
+-.....+.....- .- ..+.-+.+..||.+.++|=+.
T Consensus 84 ~~~~~~~~~~~~~~--~~-~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 84 EVSKKAKGKRSRKN--QT-KKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred Eecccccccccccc--cc-cccccCcceEEEEEeEEEEcc
Confidence 32211100000000 00 001112357899998887553
No 258
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.57 E-value=0.2 Score=46.81 Aligned_cols=93 Identities=19% Similarity=0.251 Sum_probs=60.7
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc----eeEeeeecCCCCCeeeceeEEcccCcccCC-CcEEEEEEE
Q psy1415 314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ----KVKTRVLRKTRNPIYNEEFTFTGITPHQLK-GSTLHFVVF 388 (622)
Q Consensus 314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~----~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~-~~~L~~~V~ 388 (622)
..++|.+....++...+ ....+-|+.+.+..|++ ...|.......++.|||...|. +...+|. +..|.|+||
T Consensus 8 ~~~~i~i~~~~~~~~~~--~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~-i~~~~LP~~arL~itl~ 84 (156)
T cd08380 8 FNLRIKIHGITNINLLD--SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFD-ILISDLPREARLCLSIY 84 (156)
T ss_pred CCeEEEEEeeccccccC--CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEcc-chhhcCChhheEEEEEE
Confidence 35667777777775422 34467888888776665 3344444444689999999997 5555543 345666666
Q ss_pred eeccCCCCCCCcceEEEEEeccCCC--CcceeeEEEEeCCcc
Q psy1415 389 SFDRYSRDDIGSTLHFVVFSFDRYS--RDDIVGEVFYSLQSF 428 (622)
Q Consensus 389 d~d~~~~~d~~~~l~i~v~d~d~~~--~d~~iG~~~i~l~~l 428 (622)
+.+..+ .+..||.+.++|=+.
T Consensus 85 -------------------~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 85 -------------------AVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred -------------------EEecCCCCcceEEEEEeEEeEcc
Confidence 655443 468999999987554
No 259
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=94.51 E-value=0.1 Score=54.75 Aligned_cols=101 Identities=21% Similarity=0.327 Sum_probs=77.7
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCC-----CCccEEEEEEEE
Q psy1415 502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADN-----LDSVSLELLLLD 576 (622)
Q Consensus 502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~-----l~~~~L~i~V~D 576 (622)
+.|.|+++++.+... .-.-.+...+ +|. ...|..+..+-.|.||..+.|.+.... .+..+|++++|-
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~--ng~---~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a 73 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKF--NGE---SLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFA 73 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEe--CCc---eeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEE
Confidence 578899999997652 2344677776 444 446888889999999999999876442 335679999999
Q ss_pred cC-CCCCCceeEEEEECCCCC---CC---cccchhhhhhcC
Q psy1415 577 WD-RVTKNEVIGRLDLGGDKS---SG---TALTHWTDVCNS 610 (622)
Q Consensus 577 ~d-~~~~d~~LG~v~i~L~~~---~~---~~~~~W~~L~~~ 610 (622)
.+ .-+..+.+|.+.++|... .. ....+||+|++.
T Consensus 74 ~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~ 114 (340)
T PF12416_consen 74 VDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSS 114 (340)
T ss_pred ecCCCCcceeccEEEEEccccccccccccccCCCeeEcccc
Confidence 88 557889999999999876 43 366789999988
No 260
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.46 E-value=0.0046 Score=62.12 Aligned_cols=88 Identities=26% Similarity=0.330 Sum_probs=68.0
Q ss_pred hhccceeccccccCCccccccccccCCChh---------------------------hhh-cCCCCCccCcccchhhHHH
Q psy1415 47 LEAKKLALSQMTLKRPTAVRSPAAAGPNSH---------------------------YLK-KSPSPTYATPVANQRVEEY 98 (622)
Q Consensus 47 e~~~kl~~~e~~l~r~e~~r~~~~e~~~~~---------------------------~l~-~lk~~~~~~~~~~~~e~~~ 98 (622)
...|||..+|.+|+++++ |+..+..+.-+ .|. .|+......+.+..+.+.-
T Consensus 40 ~l~rri~~lE~~le~~ee-rL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~ 118 (237)
T PF00261_consen 40 SLQRRIQLLEEELERAEE-RLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEV 118 (237)
T ss_dssp HHHHHHHHHHCCCHHHHC-CCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999 99987433222 001 4444445556667778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy1415 99 KRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEV 135 (622)
Q Consensus 99 ~~~i~~l~~~lkeae~rae~ae~~~~~l~~~~~~le~ 135 (622)
..++..+...|..||.|++.+|..+..|+.++..+..
T Consensus 119 ~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~ 155 (237)
T PF00261_consen 119 ERKLKVLEQELERAEERAEAAESKIKELEEELKSVGN 155 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999887643
No 261
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.36 E-value=0.3 Score=45.68 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=61.3
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc----eeEeeeecCCCCCeeeceeEEcccCcccCC-CcEEEEEEE
Q psy1415 314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ----KVKTRVLRKTRNPIYNEEFTFTGITPHQLK-GSTLHFVVF 388 (622)
Q Consensus 314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~----~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~-~~~L~~~V~ 388 (622)
..++|.++++.++.-.+ .+|-||.+.+..|++ ...|..+.. .++.|||-..|. +...+|. +..|.|.||
T Consensus 8 ~~~~v~i~~~~~~~~~~----~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fp-I~i~dLPr~ArL~iti~ 81 (158)
T cd08398 8 SNLRIKILCATYVNVND----IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYD-IYIPDLPRSARLCLSIC 81 (158)
T ss_pred CCeEEEEEeeccCCCCC----cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcc-cchhcCChhheEEEEEE
Confidence 46889999999987543 368999998776665 234544443 679999999997 6666653 345666666
Q ss_pred eeccCCCCCCCcceEEEEEeccCC----CCcceeeEEEEeCCcc
Q psy1415 389 SFDRYSRDDIGSTLHFVVFSFDRY----SRDDIVGEVFYSLQSF 428 (622)
Q Consensus 389 d~d~~~~~d~~~~l~i~v~d~d~~----~~d~~iG~~~i~l~~l 428 (622)
+.... .....||.+.++|=+-
T Consensus 82 -------------------~~~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 82 -------------------SVKGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred -------------------EEecccCCCCceEEEEEEEEEEECC
Confidence 54321 1235799998887553
No 262
>KOG3837|consensus
Probab=94.24 E-value=0.058 Score=56.50 Aligned_cols=101 Identities=8% Similarity=-0.048 Sum_probs=67.8
Q ss_pred ccccccceeccccCCcccCCCCCCCCCccceeeec--CCCCCCCccccccCCCCCCCCCCCCCCCCCCC---CC-----c
Q psy1415 169 EAKKLALSQMTLKRPTAVRSPAAAGPNSHYLKKSP--SPTYATPVASLVNSPTGSTNSNNGAGSNSHSP---IQ-----P 238 (622)
Q Consensus 169 ~~~~l~~~~~~~~~~~a~~~~~~~dp~~~~vk~~~--~p~~~~~~kT~v~~~t~nP~~~E~~~f~~~~~---~~-----~ 238 (622)
.+.-|-..++..+..|....+--.|. ||++.+ ..+..+..||.|+++|.+|.|+|.|....-.- .. -
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~---fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~f 441 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQ---FVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRF 441 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHh---hhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHH
Confidence 33334444444455444443334455 887753 23345788999999999999999999976541 11 1
Q ss_pred ccCCCeEEEEecccc-CCCcceeeeccCCCCCCCC
Q psy1415 239 CVALPGTVVITENEK-AAPLVLGVAGPTTAGNGPA 272 (622)
Q Consensus 239 ~~~~L~~~V~d~d~~-~~dd~lG~~~~~l~~l~~~ 272 (622)
....+.|++|....+ ..|.++|.+.+.|.-+...
T Consensus 442 kr~g~kfeifhkggf~rSdkl~gt~nikle~Len~ 476 (523)
T KOG3837|consen 442 KRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENM 476 (523)
T ss_pred HhcCeeEEEeeccccccccceeceeeeeehhhhcc
Confidence 235688999998866 5689999888877766543
No 263
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=94.10 E-value=0.36 Score=41.50 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=53.6
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEee-EeeeeeccCCCCCeeecEEEEEecCCCCC-ccEEEEEEEEcCC
Q psy1415 502 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVA-KKKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDWDR 579 (622)
Q Consensus 502 L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~-~~kT~~~~~tlnP~wne~f~f~v~~~~l~-~~~L~i~V~D~d~ 579 (622)
+.+.+..+++.........++-||.+.+-.++.... ...|..+.-...+.|||.+.|++.-.++. +..|.|+||+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 556666777665443333358899998877666543 23455554456689999999998877655 5679999999643
No 264
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=94.06 E-value=0.18 Score=47.35 Aligned_cols=75 Identities=21% Similarity=0.228 Sum_probs=53.0
Q ss_pred CCCCCEEEEEEeCCCc----eeEeeeecCCCCCeeeceeEEcccCcccCC-CcEEEEEEEeeccCCCCCCCcceEEEEEe
Q psy1415 334 GSSDPYVKVHLLPDKQ----KVKTRVLRKTRNPIYNEEFTFTGITPHQLK-GSTLHFVVFSFDRYSRDDIGSTLHFVVFS 408 (622)
Q Consensus 334 ~~sDPyv~v~l~~~~~----~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~-~~~L~~~V~d~d~~~~~d~~~~l~i~v~d 408 (622)
..+|-||.+.+..+++ ...|..+.-+..+.|||...|. +...+|. +..|.|.|| +
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fp-I~i~dLP~~a~L~iti~-------------------~ 87 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLP-IKYSDLPRNSQLAITIW-------------------D 87 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcc-cchhcCChhheEEEEEE-------------------E
Confidence 3478899998776665 3466666666779999999997 6666653 334555555 7
Q ss_pred ccCCCCcceeeEEEEeCCcc
Q psy1415 409 FDRYSRDDIVGEVFYSLQSF 428 (622)
Q Consensus 409 ~d~~~~d~~iG~~~i~l~~l 428 (622)
.+..++...||.+.++|=+-
T Consensus 88 ~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 88 VSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred ecCCCCceEEEEEEEeeECC
Confidence 76655678999999987543
No 265
>KOG3837|consensus
Probab=92.91 E-value=0.027 Score=58.94 Aligned_cols=111 Identities=12% Similarity=0.223 Sum_probs=77.9
Q ss_pred cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCC---------CCCccEE
Q psy1415 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD---------NLDSVSL 570 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~---------~l~~~~L 570 (622)
..|.+.|.++.+++........|-|+++.+.--.....+.+|.+++.|.+|.|+|.|.+.|..- -+....+
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~ 446 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK 446 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence 3477778888887655434445889999874211223367899999999999999999998751 1113448
Q ss_pred EEEEEEcCCC-CCCceeEEEEECCCCCCC-cccchhhhhhcC
Q psy1415 571 ELLLLDWDRV-TKNEVIGRLDLGGDKSSG-TALTHWTDVCNS 610 (622)
Q Consensus 571 ~i~V~D~d~~-~~d~~LG~v~i~L~~~~~-~~~~~W~~L~~~ 610 (622)
.|++|....+ .+|.++|.+.+.|..+.. .+....++|++.
T Consensus 447 kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG 488 (523)
T KOG3837|consen 447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG 488 (523)
T ss_pred eEEEeeccccccccceeceeeeeehhhhcccchhhceecccc
Confidence 9999997654 689999999999864433 344446666654
No 266
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=92.44 E-value=1.4 Score=40.89 Aligned_cols=110 Identities=18% Similarity=0.277 Sum_probs=74.7
Q ss_pred CCCCEEEEEEEEeeCCCCCC-CCCCCCCCEEEEEEeCCCceeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEe
Q psy1415 311 EKENVLVVTVIKCRDLFIKD-TPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFS 389 (622)
Q Consensus 311 ~~~~~L~V~vi~a~~L~~~d-~~~~~sDPyv~v~l~~~~~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d 389 (622)
+....|.+.|+.|+-+-.-- ...+..+..+.+++.-+++.++|+.+.-+.+|.|+|.|-|. +........
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~-l~~~~~~~~-------- 76 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFE-LPRDSFGAG-------- 76 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEE-ecccccccc--------
Confidence 34567889999998775432 01156677788887668889999999999999999999997 443321110
Q ss_pred eccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 390 FDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 390 ~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
.+..+.-....+|.+.+-..|..+...++|+-.+.-..+.
T Consensus 77 ~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL 116 (156)
T PF15627_consen 77 STATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVL 116 (156)
T ss_pred cchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHh
Confidence 0011112445667777667777777788998887777665
No 267
>KOG1265|consensus
Probab=92.17 E-value=0.45 Score=54.53 Aligned_cols=86 Identities=26% Similarity=0.493 Sum_probs=63.3
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEe--CCCc---eeEeeeec-CCCCCeeec-eeEEcccCcccCCCcEEEEE
Q psy1415 314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLL--PDKQ---KVKTRVLR-KTRNPIYNE-EFTFTGITPHQLKGSTLHFV 386 (622)
Q Consensus 314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~--~~~~---~~kT~vi~-~t~nP~W~e-~f~f~~~~~~~l~~~~L~~~ 386 (622)
+.+.|+||.|.-|..++ ...||.|.+. |.+. .++|+++. +..||+|+| .|.|.-+-..+|. .|+|.
T Consensus 703 ~t~sV~VISgqFLSdrk-----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA--~lRia 775 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRK-----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELA--SLRIA 775 (1189)
T ss_pred eeEEEEEEeeeeccccc-----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchh--heeee
Confidence 46889999999997665 3489999873 3332 67888764 788999995 5788545555543 46666
Q ss_pred EEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCccc
Q psy1415 387 VFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 387 V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~ 429 (622)
|| +. ...+||+-.++++.+.
T Consensus 776 vy-------------------eE----ggK~ig~RIlpvd~l~ 795 (1189)
T KOG1265|consen 776 VY-------------------EE----GGKFIGQRILPVDGLN 795 (1189)
T ss_pred ee-------------------cc----CCceeeeeccchhccc
Confidence 66 53 3579999999998886
No 268
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=91.43 E-value=1.8 Score=40.16 Aligned_cols=104 Identities=22% Similarity=0.384 Sum_probs=69.3
Q ss_pred cCCccEEEEEEEeecCCCCCC--CCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCC-------
Q psy1415 496 QPAANRFTIVVLKARNLPKMD--VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD------- 566 (622)
Q Consensus 496 ~~~~g~L~V~I~~A~~L~~~d--~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~------- 566 (622)
.|....|.+.|..++-....- ..|..+..+.+.+.-.++ +++|+.+..+.+|.|+|.|-|++......
T Consensus 5 ~~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~Q---RF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~ 81 (156)
T PF15627_consen 5 DPGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQ---RFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATT 81 (156)
T ss_pred CCCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCc---eEecCCcccccCCCCCCcEEEEecccccccccchhH
Confidence 345567899999987553211 116667777777744443 88999999999999999999999866311
Q ss_pred ----ccEEEEEEEEcCCCCCCceeEEEEECCCCCCCcccchhhhhhcCCCC
Q psy1415 567 ----SVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRR 613 (622)
Q Consensus 567 ----~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~~~~~~~~W~~L~~~p~~ 613 (622)
...|.+-|.-.|..+...++|+-.+. |-..+.++..
T Consensus 82 lls~~~pihivli~~d~~~~~~Lv~s~~ld-----------WR~vL~s~~~ 121 (156)
T PF15627_consen 82 LLSISDPIHIVLIRTDPSGETTLVGSHFLD-----------WRKVLCSGNG 121 (156)
T ss_pred hhcCCCceEEEEEEecCCCceEeeeeceeh-----------HHHHhccCCC
Confidence 12366667666665555666665554 5555555543
No 269
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=91.38 E-value=0.92 Score=43.08 Aligned_cols=104 Identities=19% Similarity=0.205 Sum_probs=62.8
Q ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc----eeEeeeec----CCCCCeeeceeEEcccCcccC-CCcEE
Q psy1415 313 ENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ----KVKTRVLR----KTRNPIYNEEFTFTGITPHQL-KGSTL 383 (622)
Q Consensus 313 ~~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~----~~kT~vi~----~t~nP~W~e~f~f~~~~~~~l-~~~~L 383 (622)
...+.|.|..+.+++... .....|-|+.+.+..|++ ...|+... -...+.|||...|. +...+| .+..|
T Consensus 7 ~~~~~i~v~~~h~~~~~~-~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~-i~i~~LPrearL 84 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTW-VQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFP-IPVCQLPRESRL 84 (171)
T ss_pred cccEEEEEEEeecCChHH-hhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECc-cchhcCChhHEE
Confidence 345778888999998764 344578999998776766 23443221 12357799999997 555554 34567
Q ss_pred EEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcc
Q psy1415 384 HFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF 428 (622)
Q Consensus 384 ~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l 428 (622)
.|++|+......+.. + ..-..+..||.+.++|=+.
T Consensus 85 ~itl~~~~~~~~~~~---------~-~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 85 VLTLYGTTSSPDGGS---------N-KQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEEEecCCcccc---------c-cccccceEEEEEeEeeEcc
Confidence 777773221110000 0 0001457999999887554
No 270
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=90.93 E-value=3 Score=39.80 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=47.6
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeeecCCCCCeeeceeEEcccCcccCC-CcEEEEEEEe
Q psy1415 314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLRKTRNPIYNEEFTFTGITPHQLK-GSTLHFVVFS 389 (622)
Q Consensus 314 ~~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~-~~~L~~~V~d 389 (622)
..++|.|..+.++. .+ ......-||++.+..|+. ..+|.....+.+|.|||...|. +...+|. ...|.|.||+
T Consensus 10 ~~friki~~~~~~~-~~-~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~-I~~~dLP~~arLc~ti~~ 86 (178)
T cd08399 10 RKFRVKILGIDIPV-LP-RNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFD-IKIKDLPKGALLNLQIYC 86 (178)
T ss_pred CCEEEEEEeecccC-cC-CCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECc-cccccCChhhEEEEEEEE
Confidence 35677777776443 22 233344677777665555 3466666667789999999997 6666654 4567788873
No 271
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=90.13 E-value=3.2 Score=38.01 Aligned_cols=73 Identities=22% Similarity=0.324 Sum_probs=47.8
Q ss_pred CCEEEEEEeCCCc-----eeEeeeecCC-CCCeeeceeEEcccCcccCC-CcEEEEEEEeeccCCCCCCCcceEEEEEec
Q psy1415 337 DPYVKVHLLPDKQ-----KVKTRVLRKT-RNPIYNEEFTFTGITPHQLK-GSTLHFVVFSFDRYSRDDIGSTLHFVVFSF 409 (622)
Q Consensus 337 DPyv~v~l~~~~~-----~~kT~vi~~t-~nP~W~e~f~f~~~~~~~l~-~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~ 409 (622)
+-||.+.+-.|++ +..|....-+ .+|.|+|...|. +...+|. +..|.|.|| ..
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~-i~i~~LPr~a~L~~~l~-------------------~~ 62 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFP-IPISDLPREARLCFTLY-------------------GV 62 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEE-EEGGGS-TTEEEEEEEE-------------------EE
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEee-cChHHCChhHeEEEEEE-------------------Ee
Confidence 3467777665665 3366666665 799999999997 6666553 455667776 55
Q ss_pred cCCCCc----ceeeEEEEeCCccc
Q psy1415 410 DRYSRD----DIVGEVFYSLQSFE 429 (622)
Q Consensus 410 d~~~~d----~~iG~~~i~l~~l~ 429 (622)
+..... ..||.+.++|=+..
T Consensus 63 ~~~~~~~~~~~~lgw~n~~lFd~~ 86 (142)
T PF00792_consen 63 DSKKKSKKKKVPLGWVNLPLFDYR 86 (142)
T ss_dssp ECSTTT--EEEEEEEEEEESB-TT
T ss_pred cCCCccccceeEEEEEEEEeECCC
Confidence 544443 79999999986653
No 272
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=89.02 E-value=14 Score=35.71 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=45.6
Q ss_pred eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCC
Q psy1415 350 KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQ 426 (622)
Q Consensus 350 ~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~ 426 (622)
.++|-|...+.+|.|+|++.+. ++.+...+.-|.|.++++.-... ....+..+|-+.++|=
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~-lP~~~~~~~HL~FtfrH~S~~~~---------------kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVA-IPIEDFKSSHLRFTFKHRSSNEA---------------KDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEe-cChhhCCCeEEEEEEEeeccccc---------------cCCCCCceEEEEEeee
Confidence 7888898999999999999997 88888888889999884332100 1112457888888873
No 273
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=87.90 E-value=6.7 Score=35.62 Aligned_cols=90 Identities=18% Similarity=0.273 Sum_probs=56.2
Q ss_pred cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeecc-CCCCCeeecEEEEEecCC------CCCccEEEE
Q psy1415 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK-RTLNPVYNESFVFEVPAD------NLDSVSLEL 572 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~-~tlnP~wne~f~f~v~~~------~l~~~~L~i 572 (622)
..+.+.|.+..+++. .+..+.+.+..+........|.... .+..-.||+.|.+.+... .+....+.|
T Consensus 7 f~~~l~i~~l~~~p~------~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 7 FQFDLTIHELENLPS------SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred EEEEEEEEEeECcCC------CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 357888999998876 2334444443222211012222222 345678999999986542 255667999
Q ss_pred EEEEcCCCCCCceeEEEEECCCC
Q psy1415 573 LLLDWDRVTKNEVIGRLDLGGDK 595 (622)
Q Consensus 573 ~V~D~d~~~~d~~LG~v~i~L~~ 595 (622)
.|+....-++...||.+.|+|.+
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLae 103 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAE 103 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHH
Confidence 99987543444799999999974
No 274
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=87.72 E-value=1.3 Score=42.50 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=46.0
Q ss_pred eEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCC--CCceeEEEEECCC
Q psy1415 537 AKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT--KNEVIGRLDLGGD 594 (622)
Q Consensus 537 ~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~--~d~~LG~v~i~L~ 594 (622)
..++|.+...+.+|.|+|++.+.|+.+...+..|.|+++....-. ....+|-.-++|-
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 356888999999999999999999998888888999888743321 1257888888874
No 275
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=87.24 E-value=1.1 Score=34.56 Aligned_cols=31 Identities=29% Similarity=0.422 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1415 97 EYKRQIKQLAVKLKEAEARAEFAEKTVKKLQ 127 (622)
Q Consensus 97 ~~~~~i~~l~~~lkeae~rae~ae~~~~~l~ 127 (622)
+-|.+++.|+.+|.++|.|++.||...+.++
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4688899999999999999999999887654
No 276
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=86.90 E-value=3.9 Score=39.51 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=46.3
Q ss_pred eeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCC-CC---CceeEEEEECCC
Q psy1415 536 VAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV-TK---NEVIGRLDLGGD 594 (622)
Q Consensus 536 ~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~-~~---d~~LG~v~i~L~ 594 (622)
...++|.+.+.+.+|.|+|++.+.|+.+...+..|.|+++..... .+ ...+|-.-++|-
T Consensus 52 ~se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 52 IDEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred ceeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 346688888999999999999999999888888899999875432 12 246887777774
No 277
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=86.19 E-value=8.5 Score=37.04 Aligned_cols=39 Identities=26% Similarity=0.444 Sum_probs=34.3
Q ss_pred eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEe
Q psy1415 350 KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFS 389 (622)
Q Consensus 350 ~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d 389 (622)
.++|-+...+.+|.|+|++.+. ++.+...+.-|.|..++
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~-lP~~~~~~~HL~FtfrH 92 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLP-IPIDKFRGSHLRFEFRH 92 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEe-cChhhCCCeeEEEEEEE
Confidence 6789999999999999999997 88888888888888873
No 278
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=85.99 E-value=2.5 Score=40.57 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=38.1
Q ss_pred EeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCC-CC--ceeEEEEECCCC
Q psy1415 538 KKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT-KN--EVIGRLDLGGDK 595 (622)
Q Consensus 538 ~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~-~d--~~LG~v~i~L~~ 595 (622)
...|.+..++.+|.|+|+|.+.++.+...+..|.|++++...-. ++ ..+|-+-++|.+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 55788888999999999999999988777888999999965432 22 699999999975
No 279
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=85.07 E-value=0.26 Score=42.40 Aligned_cols=25 Identities=28% Similarity=0.655 Sum_probs=1.9
Q ss_pred eeehhhHHHHHhhheeeeeeeeccC
Q psy1415 20 LGLGLAGLVFVATVCLATCYCRRRS 44 (622)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~k 44 (622)
+||+|-.|+|.+-+++.+|||+||.
T Consensus 27 aGIGiL~VILgiLLliGCWYckRRS 51 (118)
T PF14991_consen 27 AGIGILIVILGILLLIGCWYCKRRS 51 (118)
T ss_dssp -SSS---------------------
T ss_pred ccceeHHHHHHHHHHHhheeeeecc
Confidence 4666666666666888889999875
No 280
>KOG1452|consensus
Probab=85.01 E-value=2.3 Score=43.44 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=55.0
Q ss_pred EEEECCCCEEEEEEEEeeCCCCCCC-CCCCCCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEE
Q psy1415 307 IKYQEKENVLVVTVIKCRDLFIKDT-PSGSSDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLH 384 (622)
Q Consensus 307 l~~~~~~~~L~V~vi~a~~L~~~d~-~~~~sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~ 384 (622)
+.....+|.|.+.++.+|+|+.... .+-.-+-||.+.. +.+ ..+|.+.....--.|.|+|...++. ...+.
T Consensus 44 l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~--drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-----~~vl~ 116 (442)
T KOG1452|consen 44 LRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEP--DRQHPARTRVRSSGPGFAWAEDFKHDVVN-----IEVLH 116 (442)
T ss_pred eeeecccceEEEEEecccccccChhccCceeeeeeeeee--cccCccccccccCCCCccchhhceeeccc-----ceeee
Confidence 3444568999999999999975431 2345688998887 554 6777777777777899999886443 34577
Q ss_pred EEEEeec
Q psy1415 385 FVVFSFD 391 (622)
Q Consensus 385 ~~V~d~d 391 (622)
+.||.|+
T Consensus 117 ~lvySW~ 123 (442)
T KOG1452|consen 117 YLVYSWP 123 (442)
T ss_pred EEEeecC
Confidence 8888433
No 281
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=84.39 E-value=6.6 Score=37.14 Aligned_cols=69 Identities=13% Similarity=0.255 Sum_probs=50.3
Q ss_pred CcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCCCCceeEEEEECCCCC
Q psy1415 522 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKS 596 (622)
Q Consensus 522 DPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~ 596 (622)
.-|+++.+ +++.+.+.+.+.......-.||+.|.+.|.. .. .+|.|.||.... ..+..|+.+.+++...
T Consensus 38 ~~~ikl~~--N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~--~P-esi~l~i~E~~~-~~~~~la~v~vpvP~~ 106 (168)
T PF15625_consen 38 RYYIKLFF--NDKEVSRTRSRPLWSDFRVHFNEIFNVQITR--WP-ESIKLEIYEKSG-LSDRLLAEVFVPVPGS 106 (168)
T ss_pred eEEEEEEE--CCEEEEeeeeEecCCCeEEeccCEEEEEEec--CC-CEEEEEEEEccC-ccceEEEEEEeeCCCC
Confidence 45788877 7776555555555445556689999999864 22 359999999776 6789999999999743
No 282
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=82.25 E-value=0.25 Score=45.48 Aligned_cols=89 Identities=24% Similarity=0.243 Sum_probs=54.2
Q ss_pred hccceeccccccCCccccccccccCCChhhhhcCCCCCccCcccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1415 48 EAKKLALSQMTLKRPTAVRSPAAAGPNSHYLKKSPSPTYATPVAN---QRVEEYKRQIKQLAVKLKEAEARAEFAEKTVK 124 (622)
Q Consensus 48 ~~~kl~~~e~~l~r~e~~r~~~~e~~~~~~l~~lk~~~~~~~~~~---~~e~~~~~~i~~l~~~lkeae~rae~ae~~~~ 124 (622)
..+|+..+|.+|+..++ ++..+..+.-+.=+.....+....+.+ +.-+..+..++..+.+|.+++.+|+..||.|.
T Consensus 40 L~~K~~~lE~eld~~~~-~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~ 118 (143)
T PF12718_consen 40 LQKKNQQLEEELDKLEE-QLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVK 118 (143)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45778888888888877 655443222220000000011111112 22334455577777889999999999999999
Q ss_pred HHHHhhhhhcccc
Q psy1415 125 KLQKEVDRLEVSG 137 (622)
Q Consensus 125 ~l~~~~~~le~~~ 137 (622)
.|+.+.+..|..-
T Consensus 119 ~le~~~~~~E~k~ 131 (143)
T PF12718_consen 119 ALEQERDQWEEKY 131 (143)
T ss_pred HHHhhHHHHHHHH
Confidence 9999988887653
No 283
>KOG1452|consensus
Probab=81.07 E-value=2.6 Score=43.00 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=70.1
Q ss_pred cCCccEEEEEEEeecCCCCCCC--CCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEE
Q psy1415 496 QPAANRFTIVVLKARNLPKMDV--TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELL 573 (622)
Q Consensus 496 ~~~~g~L~V~I~~A~~L~~~d~--~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~ 573 (622)
....|.|.++++.+++|..... +-..+-||.+.. + +..+.||.+......-.|.|.|..++-+. ..+.+-
T Consensus 47 ~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~--d--rqh~aRt~vrs~~~~f~w~e~F~~Dvv~~----~vl~~l 118 (442)
T KOG1452|consen 47 VSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEP--D--RQHPARTRVRSSGPGFAWAEDFKHDVVNI----EVLHYL 118 (442)
T ss_pred ecccceEEEEEecccccccChhccCceeeeeeeeee--c--ccCccccccccCCCCccchhhceeecccc----eeeeEE
Confidence 4457899999999999965432 334577888876 2 23355666666566667999999887633 236677
Q ss_pred EEEcCCCCCCc--eeEEEEECCCCCCCcccchhhhhhcCCCCce
Q psy1415 574 LLDWDRVTKNE--VIGRLDLGGDKSSGTALTHWTDVCNSPRRQI 615 (622)
Q Consensus 574 V~D~d~~~~d~--~LG~v~i~L~~~~~~~~~~W~~L~~~p~~~i 615 (622)
||.|+.-.++. ..|- |.++.+..+.-+|-+.|+-.|++++
T Consensus 119 vySW~pq~RHKLC~~g~--l~~~~v~rqspd~~~Al~lePrgq~ 160 (442)
T KOG1452|consen 119 VYSWPPQRRHKLCHLGL--LEAFVVDRQSPDRVVALYLEPRGQP 160 (442)
T ss_pred EeecCchhhccccccch--hhhhhhhhcCCcceeeeecccCCCC
Confidence 88887643333 3553 3333343444455566666677665
No 284
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=80.83 E-value=9.8 Score=32.54 Aligned_cols=71 Identities=24% Similarity=0.289 Sum_probs=46.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc----eeEeeeecCCCCCeeeceeEEcccCcccCC-CcEEEEEEE
Q psy1415 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ----KVKTRVLRKTRNPIYNEEFTFTGITPHQLK-GSTLHFVVF 388 (622)
Q Consensus 316 L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~----~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~-~~~L~~~V~ 388 (622)
+.+.+....+..... ....+|-||.+.+..|++ ...|....-...+.|||...|. +...+|. ...|.|.+|
T Consensus 13 ~~~~~~~~~~~~l~~-~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~-i~i~~LPr~a~L~~~i~ 88 (100)
T smart00142 13 LVITIALIHGIPLNW-SRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFP-IQISDLPREARLCITIY 88 (100)
T ss_pred eEEEEEEeeCCCccc-ccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEcc-CchhcCChhhEEEEEEE
Confidence 555666666665543 122258899998776665 3356555556669999999997 6666654 345666666
No 285
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=80.60 E-value=0.87 Score=38.80 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=21.9
Q ss_pred cccceEeeehhhHHHHHhhh--eeeeeeeeccC
Q psy1415 14 VSGHTVLGLGLAGLVFVATV--CLATCYCRRRS 44 (622)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~k 44 (622)
.++-+|+||.++++++++.+ ++.|||.+|||
T Consensus 63 ls~gaiagi~vg~~~~v~~lv~~l~w~f~~r~k 95 (96)
T PTZ00382 63 LSTGAIAGISVAVVAVVGGLVGFLCWWFVCRGK 95 (96)
T ss_pred cccccEEEEEeehhhHHHHHHHHHhheeEEeec
Confidence 34568999999888666443 46677777765
No 286
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=78.95 E-value=49 Score=29.82 Aligned_cols=95 Identities=23% Similarity=0.314 Sum_probs=51.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCCEEEEEEeCCCc---eeEeeee-cCCCCCeeeceeEEcccCcccCCCcEEEEEEEee
Q psy1415 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVL-RKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSF 390 (622)
Q Consensus 315 ~L~V~vi~a~~L~~~d~~~~~sDPyv~v~l~~~~~---~~kT~vi-~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~ 390 (622)
.+.+.+.+..+++... .--|++... ++. ...|... ..+-.-.|++.|.+. .... .
T Consensus 8 ~~~l~i~~l~~~p~~~-----~~v~v~wkr--~~~~~~~~~t~~~~~~~~~v~w~e~~~~~-~tl~----------~--- 66 (143)
T PF10358_consen 8 QFDLTIHELENLPSSN-----GKVFVKWKR--GDKSKGSGTTSRANVKNGKVQWNEEFSFP-CTLY----------R--- 66 (143)
T ss_pred EEEEEEEEeECcCCCC-----CEEEEEEEE--CCCCccceeeeeeeccccEEEEeeEEEEE-EEEE----------E---
Confidence 4667778888776522 223444444 333 3444443 344458999988875 2211 1
Q ss_pred ccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCcccc
Q psy1415 391 DRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET 430 (622)
Q Consensus 391 d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~l~~ 430 (622)
|..+.......+.|.|+.....++...+|.+.++|++...
T Consensus 67 ~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~ 106 (143)
T PF10358_consen 67 DKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYAN 106 (143)
T ss_pred cCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhC
Confidence 0000011222344555565433334699999999999873
No 287
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=75.45 E-value=0.9 Score=46.61 Aligned_cols=25 Identities=24% Similarity=0.652 Sum_probs=0.0
Q ss_pred EeeehhhHHHHHhhheeeeeeeeccCC
Q psy1415 19 VLGLGLAGLVFVATVCLATCYCRRRSS 45 (622)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~k~ 45 (622)
|.++++++++|+|+ +.+|+|||||+
T Consensus 150 IpaVVI~~iLLIA~--iIa~icyrrkR 174 (290)
T PF05454_consen 150 IPAVVIAAILLIAG--IIACICYRRKR 174 (290)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHH--HHHHHhhhhhh
Confidence 44555666666554 45677777777
No 288
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=74.81 E-value=8.8 Score=36.76 Aligned_cols=61 Identities=18% Similarity=0.365 Sum_probs=35.7
Q ss_pred eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCc
Q psy1415 350 KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS 427 (622)
Q Consensus 350 ~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~ 427 (622)
.+.|.+...+.+|.|+|+|.+. ++.....+.-|.|++++.... +...+...+|.+.++|-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~-LP~~l~~~~HLlFtf~h~s~~----------------~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQ-LPPDLFPKHHLLFTFYHVSCK----------------ESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEE-E-CCCCTTEEEEEEEEE---S----------------SSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEE-cCchhcccEEEEEEEEeeccc----------------cccCccceeEEEEEEeee
Confidence 6778888899999999999997 676666677788888833321 111112799999999876
No 289
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=73.02 E-value=2.6 Score=38.72 Aligned_cols=19 Identities=21% Similarity=0.551 Sum_probs=13.8
Q ss_pred HHHHhhheeeeeeeeccCC
Q psy1415 27 LVFVATVCLATCYCRRRSS 45 (622)
Q Consensus 27 ~~~~~~~~~~~~~~~~~k~ 45 (622)
.++++.+++..|||+|+|.
T Consensus 61 ~ill~il~lvf~~c~r~kk 79 (154)
T PF04478_consen 61 PILLGILALVFIFCIRRKK 79 (154)
T ss_pred HHHHHHHHhheeEEEeccc
Confidence 3344566677999999887
No 290
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=71.59 E-value=12 Score=35.58 Aligned_cols=57 Identities=19% Similarity=0.181 Sum_probs=42.8
Q ss_pred EeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCC-----CCCceeEEEEECCCC
Q psy1415 538 KKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV-----TKNEVIGRLDLGGDK 595 (622)
Q Consensus 538 ~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~-----~~d~~LG~v~i~L~~ 595 (622)
.++|.+..+ .+|.|+++|.+.++.....+..|.|++++...- .....+|-+-++|-+
T Consensus 54 ~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 334444444 899999999999987665677899999996532 346689999999864
No 291
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=69.66 E-value=9 Score=30.59 Aligned_cols=57 Identities=12% Similarity=0.331 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeehhhhhhh
Q psy1415 93 QRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEVSGHTVLGLGLAGLV 149 (622)
Q Consensus 93 ~~e~~~~~~i~~l~~~lkeae~rae~ae~~~~~l~~~~~~le~~~~~~~g~~~~~~~ 149 (622)
++-...+..++.+.++....|.+-+..|.....+.+.++++++...=++|++++++.
T Consensus 6 e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~iiGaiI 62 (71)
T PF10779_consen 6 EKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTIIGAII 62 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666777777777888888899999999999999877777777765
No 292
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=68.34 E-value=17 Score=34.75 Aligned_cols=58 Identities=21% Similarity=0.166 Sum_probs=45.3
Q ss_pred eEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCCCC------CceeEEEEECCC
Q psy1415 537 AKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTK------NEVIGRLDLGGD 594 (622)
Q Consensus 537 ~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~~~------d~~LG~v~i~L~ 594 (622)
....|.+...+.+|.|+++|.+.++.....+..|.|+.++.+.-.+ ...+|-.-++|-
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 4567888999999999999999999876667789999998443221 356888888875
No 293
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=64.82 E-value=33 Score=33.01 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=45.1
Q ss_pred eEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCCC--C-------CCceeEEEEECCC
Q psy1415 537 AKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV--T-------KNEVIGRLDLGGD 594 (622)
Q Consensus 537 ~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~~--~-------~d~~LG~v~i~L~ 594 (622)
....|.+...+.+|.|+|++.+.++........|.|+.++...- . ....+|-+-++|-
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl 122 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLL 122 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeee
Confidence 35678888999999999999999988766677799999986521 1 1356888888875
No 294
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=60.48 E-value=19 Score=29.04 Aligned_cols=48 Identities=27% Similarity=0.377 Sum_probs=40.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy1415 89 PVANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEVS 136 (622)
Q Consensus 89 ~~~~~~e~~~~~~i~~l~~~lkeae~rae~ae~~~~~l~~~~~~le~~ 136 (622)
++-+.++-.+...|+.|..+.++.|......-..+.+++.+++.|++.
T Consensus 22 ekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 22 EKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888999999999999999988888888888888888887654
No 295
>KOG0906|consensus
Probab=58.06 E-value=27 Score=39.48 Aligned_cols=92 Identities=20% Similarity=0.245 Sum_probs=58.4
Q ss_pred CCCCcEEEEEEEeCCeEe-eEeeeeeccCCCCCeeecEEEEEecCCCCC-ccEEEEEEEEcCCCCCCceeEEEEECCCCC
Q psy1415 519 GLADPYVKVYLLYKGQRV-AKKKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDWDRVTKNEVIGRLDLGGDKS 596 (622)
Q Consensus 519 g~sDPyV~v~l~~~~~~~-~~~kT~~~~~tlnP~wne~f~f~v~~~~l~-~~~L~i~V~D~d~~~~d~~LG~v~i~L~~~ 596 (622)
..+|-|++..+...+... .-.+|+.+.....-.|||-+.+++.-.++. +..+.|++||.+.-+...++|...+.++.-
T Consensus 45 ~~~~l~~~c~v~~~~~~~~lP~~ts~~~~~~~~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~k 124 (843)
T KOG0906|consen 45 TSSDLYVTCQVFAEGKPFALPVRTSYKAFSKRINWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFGK 124 (843)
T ss_pred cchhhhheeeeeccCCcccCCccccccccCCccchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeecc
Confidence 345667776654332221 112343333233345999999998877655 566999999988878889999999998743
Q ss_pred CC------cccchhhhhhcC
Q psy1415 597 SG------TALTHWTDVCNS 610 (622)
Q Consensus 597 ~~------~~~~~W~~L~~~ 610 (622)
.+ ..+..|+.....
T Consensus 125 ~~~lk~G~~~l~~~~~~e~d 144 (843)
T KOG0906|consen 125 YGMLKQGMQDLKLWPSVEAD 144 (843)
T ss_pred cchHhhhhhhccccccccCC
Confidence 32 233446665443
No 296
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=56.64 E-value=42 Score=26.04 Aligned_cols=35 Identities=34% Similarity=0.470 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1415 99 KRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRL 133 (622)
Q Consensus 99 ~~~i~~l~~~lkeae~rae~ae~~~~~l~~~~~~l 133 (622)
......+..+|++||.|-..-+..+..|+++++.+
T Consensus 24 k~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 24 KSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566788888888877777788887777654
No 297
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=55.98 E-value=13 Score=34.23 Aligned_cols=41 Identities=29% Similarity=0.470 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhccc
Q psy1415 96 EEYKRQIKQLAVKLKEAEAR---AEFAEKTVKKLQKEVDRLEVS 136 (622)
Q Consensus 96 ~~~~~~i~~l~~~lkeae~r---ae~ae~~~~~l~~~~~~le~~ 136 (622)
+.+++++..+..++.+.+.+ +|...|.+.-||.+++..+..
T Consensus 52 d~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~ 95 (143)
T PF12718_consen 52 DKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKK 95 (143)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 33333344444444444433 233444455555555554443
No 298
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=55.28 E-value=50 Score=31.57 Aligned_cols=41 Identities=15% Similarity=0.317 Sum_probs=32.6
Q ss_pred eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeec
Q psy1415 350 KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFD 391 (622)
Q Consensus 350 ~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d 391 (622)
.+.|.|...+.+|.|.|++-.. ++.....+.-|.|+.++.+
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~-LP~~l~~~hHLlFtF~Hvs 95 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIK-LPADLTDNHHLLFTFYHIS 95 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEE-cCCCCCCCeEEEEEEEEee
Confidence 6788888999999999999887 6666656667888888433
No 299
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=54.82 E-value=1e+02 Score=29.00 Aligned_cols=86 Identities=16% Similarity=0.111 Sum_probs=54.3
Q ss_pred EEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEee------Eeeeeecc-----CCCCCeeecEEEEEecCCCCCc-cEE
Q psy1415 503 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVA------KKKTHVKK-----RTLNPVYNESFVFEVPADNLDS-VSL 570 (622)
Q Consensus 503 ~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~------~~kT~~~~-----~tlnP~wne~f~f~v~~~~l~~-~~L 570 (622)
.=.|..|.+.. ..+-||+..+..+..+.. ...|.+.. ++..-.||..|.+.+....... ..|
T Consensus 5 ~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L 78 (168)
T PF07162_consen 5 IGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQL 78 (168)
T ss_pred EEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceE
Confidence 33466677553 346688888754222211 12333332 2344669988888876655443 469
Q ss_pred EEEEEEcCCCCCCceeEEEEECCC
Q psy1415 571 ELLLLDWDRVTKNEVIGRLDLGGD 594 (622)
Q Consensus 571 ~i~V~D~d~~~~d~~LG~v~i~L~ 594 (622)
.|+||-.|..+++.+.|--.+.|.
T Consensus 79 ~l~V~~~D~~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 79 VLQVYSLDSWGRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEEEEcccCCeEEeEEeEEEeC
Confidence 999999999999998877666664
No 300
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=53.73 E-value=0.13 Score=54.69 Aligned_cols=111 Identities=18% Similarity=0.172 Sum_probs=56.6
Q ss_pred eeeeeeeccCCchhccceeccccccCCccccccccccCCChh---hhhcCCCCCccCcccchhhHHHHH---HHHHHHHH
Q psy1415 35 LATCYCRRRSSPLEAKKLALSQMTLKRPTAVRSPAAAGPNSH---YLKKSPSPTYATPVANQRVEEYKR---QIKQLAVK 108 (622)
Q Consensus 35 ~~~~~~~~~k~~e~~~kl~~~e~~l~r~e~~r~~~~e~~~~~---~l~~lk~~~~~~~~~~~~e~~~~~---~i~~l~~~ 108 (622)
+..|++.=-+|-++.+++.=.+..|+.+++ ..+.++....+ .|. ..+++-......|++ +...|..+
T Consensus 199 Lc~WV~A~~~Y~~v~~~V~P~~~~l~~a~~-~l~~~~~~L~~~~~~l~------~l~~~l~~l~~~~~~~~~e~~~l~~~ 271 (344)
T PF12777_consen 199 LCKWVRAMVKYYEVNKEVEPKRQKLEEAEA-ELEEAEEQLAEKQAELA------ELEEKLAALQKEYEEAQKEKQELEEE 271 (344)
T ss_dssp HHHHHHHHHHHHHHCCCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555777777777666666666666 44443322211 222 111122222222222 23344444
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHhhhhhcccccceeehhhhhhheee
Q psy1415 109 LKEAEARAEFAEKT-------VKKLQKEVDRLEVSGHTVLGLGLAGLVFAA 152 (622)
Q Consensus 109 lkeae~rae~ae~~-------~~~l~~~~~~le~~~~~~~g~~~~~~~~~~ 152 (622)
.+..+.|.+.|++- ..+.+.+++.++....+++|+++.+--+.+
T Consensus 272 ~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~llaaa~is 322 (344)
T PF12777_consen 272 IEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGDSLLAAAFIS 322 (344)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 44444455444444 344456667777777888999887655443
No 301
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=52.53 E-value=38 Score=32.25 Aligned_cols=62 Identities=16% Similarity=0.340 Sum_probs=39.6
Q ss_pred eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEEeCCc
Q psy1415 350 KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS 427 (622)
Q Consensus 350 ~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i~l~~ 427 (622)
.++|-+..+ .+|.|+++|.+. ++.....+.-|.|.+++....... .......+|-+.++|-+
T Consensus 54 ~~~sv~~~~-k~p~f~deiKi~-LP~~l~~~~HLlFtf~hv~~~~~~--------------~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYYH-KNPVFNDEIKIQ-LPADLTPQHHLLFTFYHVSSKKKQ--------------GDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEcC-CCCCCceeEEEe-cCCccCCCeEEEEEEEcccccccc--------------CCCccceEEEEEEeccc
Confidence 444444444 899999999987 555544667788888843321110 12346788988888764
No 302
>PRK11637 AmiB activator; Provisional
Probab=50.97 E-value=4.1 Score=44.68 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=26.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q psy1415 92 NQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEVSG 137 (622)
Q Consensus 92 ~~~e~~~~~~i~~l~~~lkeae~rae~ae~~~~~l~~~~~~le~~~ 137 (622)
...-+..+.+|..++.++.+.+...+..+..+.+++.+|..++..-
T Consensus 74 ~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 74 LAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555556666655555666666666666666665554
No 303
>KOG4403|consensus
Probab=50.48 E-value=9 Score=40.79 Aligned_cols=47 Identities=30% Similarity=0.403 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHhhhhhcccccceeehhhhh
Q psy1415 101 QIKQLAVKLKEAEARAEF-------------------------------AEKTVKKLQKEVDRLEVSGHTVLGLGLAG 147 (622)
Q Consensus 101 ~i~~l~~~lkeae~rae~-------------------------------ae~~~~~l~~~~~~le~~~~~~~g~~~~~ 147 (622)
+|.+|...|++||.+.|. ||.+........+++.-+-.+++|.+..+
T Consensus 310 elE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~va 387 (575)
T KOG4403|consen 310 ELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVA 387 (575)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeec
Confidence 688888889988887733 44444444445555555557777766543
No 304
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=49.18 E-value=7.2 Score=37.82 Aligned_cols=29 Identities=31% Similarity=0.387 Sum_probs=16.7
Q ss_pred cceEeeehhhH--HHHHhhheeee-eeeeccCC
Q psy1415 16 GHTVLGLGLAG--LVFVATVCLAT-CYCRRRSS 45 (622)
Q Consensus 16 ~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~k~ 45 (622)
.|++++|++.| +++++++ .++ |.+.||.+
T Consensus 99 ~~~lI~lv~~g~~lLla~~~-~~~Y~~~~Rrs~ 130 (202)
T PF06365_consen 99 YPTLIALVTSGSFLLLAILL-GAGYCCHQRRSW 130 (202)
T ss_pred ceEEEehHHhhHHHHHHHHH-HHHHHhhhhccC
Confidence 35899998888 3333333 443 44455555
No 305
>KOG0904|consensus
Probab=45.21 E-value=89 Score=36.83 Aligned_cols=95 Identities=16% Similarity=0.129 Sum_probs=58.5
Q ss_pred cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeE-eeeeeccCCCCCeeecEEEEEecCCCCC-ccEEEEEEEEc
Q psy1415 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAK-KKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDW 577 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~-~kT~~~~~tlnP~wne~f~f~v~~~~l~-~~~L~i~V~D~ 577 (622)
..++|.++++.++.... ....-.||.+.+-.++..... ..|..+..+.+|.||+.+.|+|.-.++. ...|-|.||-.
T Consensus 343 ~~frI~l~~is~~n~~~-t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~v 421 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNLPE-TVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYAV 421 (1076)
T ss_pred CceEEEEeeccccCCCc-ccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeEe
Confidence 45788888877663221 111233444444456555555 3455555588999999999999877765 34466777764
Q ss_pred C----------------CCCCCceeEEEEECCCC
Q psy1415 578 D----------------RVTKNEVIGRLDLGGDK 595 (622)
Q Consensus 578 d----------------~~~~d~~LG~v~i~L~~ 595 (622)
. ..+.+-.+|-+.+.|.+
T Consensus 422 ~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD 455 (1076)
T KOG0904|consen 422 KAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFD 455 (1076)
T ss_pred echhccccccchhhhhccccccCceEEEeeeeee
Confidence 2 11234468888887763
No 306
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=44.74 E-value=81 Score=30.32 Aligned_cols=40 Identities=18% Similarity=0.367 Sum_probs=32.5
Q ss_pred eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEEee
Q psy1415 350 KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSF 390 (622)
Q Consensus 350 ~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~ 390 (622)
...|.|...+.+|.|.|++-+. ++.......-|.|+.++.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~-LP~~l~~~hHLlFtFyHv 96 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIE-LPTQLHEKHHLLFTFYHV 96 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEe-cCCcCCCCeeEEEEEEee
Confidence 6788888999999999999886 666666666788888843
No 307
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=43.78 E-value=1.2e+02 Score=28.58 Aligned_cols=68 Identities=16% Similarity=0.284 Sum_probs=41.1
Q ss_pred CCCEEEEEEeCCCc-eeEeeeecCCC--CCeeeceeEEcccCcccCCCcEEEEEEEeeccCCCCCCCcceEEEEEeccCC
Q psy1415 336 SDPYVKVHLLPDKQ-KVKTRVLRKTR--NPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRY 412 (622)
Q Consensus 336 sDPyv~v~l~~~~~-~~kT~vi~~t~--nP~W~e~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~ 412 (622)
..-|++|.+ +++ +.+|+...-+. .-.|++.|.+. |. .....|.+++|....
T Consensus 37 ~~~~ikl~~--N~k~V~~T~~~~l~~dF~v~f~~~f~v~---------------i~--------~~Pesi~l~i~E~~~- 90 (168)
T PF15625_consen 37 TRYYIKLFF--NDKEVSRTRSRPLWSDFRVHFNEIFNVQ---------------IT--------RWPESIKLEIYEKSG- 90 (168)
T ss_pred eeEEEEEEE--CCEEEEeeeeEecCCCeEEeccCEEEEE---------------Ee--------cCCCEEEEEEEEccC-
Confidence 456888888 555 77777654311 12334444443 32 133445555657655
Q ss_pred CCcceeeEEEEeCCccc
Q psy1415 413 SRDDIVGEVFYSLQSFE 429 (622)
Q Consensus 413 ~~d~~iG~~~i~l~~l~ 429 (622)
..+.+|+++.+++-...
T Consensus 91 ~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 91 LSDRLLAEVFVPVPGST 107 (168)
T ss_pred ccceEEEEEEeeCCCCc
Confidence 67889999999976554
No 308
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=43.00 E-value=1.1e+02 Score=25.84 Aligned_cols=50 Identities=22% Similarity=0.245 Sum_probs=32.8
Q ss_pred CCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCCCCCccEEEEEEEEcCC
Q psy1415 521 ADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 579 (622)
Q Consensus 521 sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~~l~~~~L~i~V~D~d~ 579 (622)
++..+.+.+ +... ...|.-.. ..+..|++.|.|.+.. +.-|+|.||-.|.
T Consensus 9 ~eV~avLkl--Dn~~--VgqT~Wk~-~s~q~WDQ~Fti~LdR----sRELEI~VywrD~ 58 (98)
T cd08687 9 SEVSAVLKL--DNTV--VGQTQWKP-KSNQAWDQSFTLELER----SRELEIAVYWRDW 58 (98)
T ss_pred cceEEEEEE--cCeE--Eeeccccc-cccccccceeEEEeec----ccEEEEEEEEecc
Confidence 566777777 3322 33454433 3578899999999863 3348999996554
No 309
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=42.53 E-value=2.2e+02 Score=25.24 Aligned_cols=89 Identities=16% Similarity=0.284 Sum_probs=48.8
Q ss_pred cEEEEEEEeecCCCCCCCCCCCCcEEEEEEEeCCeEeeEeeeeeccCCCCCeeecEEEEEecCC-CCCccEEEEEEEEcC
Q psy1415 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD-NLDSVSLELLLLDWD 578 (622)
Q Consensus 500 g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~~~~~~~~~kT~~~~~tlnP~wne~f~f~v~~~-~l~~~~L~i~V~D~d 578 (622)
..|.+.-+.-.++|..+..|.+.||++++- ++.... .+........-.=...+.+.+... .+.+ -+.|.+|+.+
T Consensus 4 ~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~--~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~G-DV~i~~~~~~ 78 (134)
T PF10409_consen 4 RPLFLKSIILHGIPNFNSGGGCRPYIEIYN--GGKKVF--STSKSYEDPKSYEQDSVIIELPKNLPLRG-DVLIKFYHKR 78 (134)
T ss_dssp -EEEEEEEEEES-TTSTTSSCCTEEEEEEE--TTEEEE--ETCCTCCCCCEEETTCEEEEEEEEEEEES-EEEEEEEECE
T ss_pred eeEEEEEEEEECCCccCCCCCEEEEEEEEC--CCccEE--EeccceeccccccceeEEEEeCCCCeEeC-CEEEEEEeCC
Confidence 346666666778888877788999999985 433321 222211111111112333333321 1222 3888999976
Q ss_pred C-CCCCceeEEEEECC
Q psy1415 579 R-VTKNEVIGRLDLGG 593 (622)
Q Consensus 579 ~-~~~d~~LG~v~i~L 593 (622)
. ...++.+.++.+.-
T Consensus 79 ~~~~~~~~~f~~~FnT 94 (134)
T PF10409_consen 79 SSSMSKEKMFRFWFNT 94 (134)
T ss_dssp TTECCCEEEEEEEEEG
T ss_pred CcccccCeEEEEEEee
Confidence 3 44677888888864
No 310
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=41.73 E-value=47 Score=28.90 Aligned_cols=54 Identities=26% Similarity=0.272 Sum_probs=29.6
Q ss_pred eeeeeccCCCCCeeecEEEEEecCCC-----CCccEEEEEEEEcCCCCCCceeEEEEECCC
Q psy1415 539 KKTHVKKRTLNPVYNESFVFEVPADN-----LDSVSLELLLLDWDRVTKNEVIGRLDLGGD 594 (622)
Q Consensus 539 ~kT~~~~~tlnP~wne~f~f~v~~~~-----l~~~~L~i~V~D~d~~~~d~~LG~v~i~L~ 594 (622)
+.|.++. ..||.+|-+-.|.|..++ +++..+.|+++..- ......+|.++|++.
T Consensus 13 q~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~ 71 (107)
T PF11618_consen 13 QTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLR 71 (107)
T ss_dssp EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--S
T ss_pred eccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeech
Confidence 3455555 789999988888887653 23566999999865 335778999999997
No 311
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=40.21 E-value=4.2 Score=36.18 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=21.5
Q ss_pred ccccccccceEeeehhhHHHHHhh--heeeeeeeeccCCc
Q psy1415 9 QSLEKVSGHTVLGLGLAGLVFVAT--VCLATCYCRRRSSP 46 (622)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~~ 46 (622)
|.+...++|++.||++|.++-|+. +++.-|++|+||..
T Consensus 56 ql~h~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 56 QLVHRFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp SSSSSSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred ccccCccccceeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 334456778999988776654443 33466667776663
No 312
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=37.94 E-value=10 Score=34.38 Aligned_cols=28 Identities=25% Similarity=0.573 Sum_probs=17.6
Q ss_pred cccceEeeehhhHHHHHhhh-eeeeeeee
Q psy1415 14 VSGHTVLGLGLAGLVFVATV-CLATCYCR 41 (622)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 41 (622)
.++.||+||+.|.+|+...+ +++.|+|+
T Consensus 58 lsgtAIaGIVfgiVfimgvva~i~icvCm 86 (155)
T PF10873_consen 58 LSGTAIAGIVFGIVFIMGVVAGIAICVCM 86 (155)
T ss_pred cccceeeeeehhhHHHHHHHHHHHHHHhh
Confidence 45789999988887664322 23444444
No 313
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=35.83 E-value=17 Score=41.45 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=15.0
Q ss_pred eeehhhHHHHHhhheeeeeeeeccCC
Q psy1415 20 LGLGLAGLVFVATVCLATCYCRRRSS 45 (622)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~k~ 45 (622)
+.++++.+++++.+.+.+-+.+||.|
T Consensus 3 ~~~ii~i~ii~i~~~~~~~~~rr~~~ 28 (569)
T PRK04778 3 IYLIIAIVVIIIIAYLAGLILRKRNY 28 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555556666666666
No 314
>PRK00846 hypothetical protein; Provisional
Probab=35.23 E-value=1.2e+02 Score=24.81 Aligned_cols=47 Identities=11% Similarity=0.011 Sum_probs=35.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q psy1415 91 ANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEVSG 137 (622)
Q Consensus 91 ~~~~e~~~~~~i~~l~~~lkeae~rae~ae~~~~~l~~~~~~le~~~ 137 (622)
.+-+.+..+++|..|+.++-=.|...|.-...|.+.++.|+.|...-
T Consensus 4 ~~~~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql 50 (77)
T PRK00846 4 LSLRDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELI 50 (77)
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677888888888888888888887788888888888876553
No 315
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=35.15 E-value=4.1 Score=39.23 Aligned_cols=9 Identities=33% Similarity=0.671 Sum_probs=3.9
Q ss_pred eEeeehhhH
Q psy1415 18 TVLGLGLAG 26 (622)
Q Consensus 18 ~~~~~~~~~ 26 (622)
+++|+++.|
T Consensus 39 ~~lg~~~lA 47 (191)
T PF04156_consen 39 FILGIALLA 47 (191)
T ss_pred HHHHHHHHH
Confidence 344444443
No 316
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=34.49 E-value=95 Score=26.27 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=30.5
Q ss_pred CCCEEEEEEeCCCc-eeEeeeecCCCCCeeeceeEEcccCcccCCCcEEEEEEE
Q psy1415 336 SDPYVKVHLLPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVF 388 (622)
Q Consensus 336 sDPyv~v~l~~~~~-~~kT~vi~~t~nP~W~e~f~f~~~~~~~l~~~~L~~~V~ 388 (622)
++-.+.+.+ ++. +.+|.-. .-.+..|++.|.|. .+. ...|+|.||
T Consensus 9 ~eV~avLkl--Dn~~VgqT~Wk-~~s~q~WDQ~Fti~-LdR----sRELEI~Vy 54 (98)
T cd08687 9 SEVSAVLKL--DNTVVGQTQWK-PKSNQAWDQSFTLE-LER----SRELEIAVY 54 (98)
T ss_pred cceEEEEEE--cCeEEeecccc-ccccccccceeEEE-eec----ccEEEEEEE
Confidence 566778888 665 7777653 34579999999986 322 235777776
No 317
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=34.06 E-value=1.2e+02 Score=23.92 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy1415 98 YKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEVS 136 (622)
Q Consensus 98 ~~~~i~~l~~~lkeae~rae~ae~~~~~l~~~~~~le~~ 136 (622)
.+++|..|+.|+--.|...|.-...|.+-+++|+.|+..
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~ 40 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQ 40 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666666666667777776543
No 318
>KOG4027|consensus
Probab=33.33 E-value=3.4e+02 Score=25.33 Aligned_cols=75 Identities=16% Similarity=0.048 Sum_probs=43.0
Q ss_pred CCCcEEEEEEEeCCeEeeE--------eeeeeccCCCCCe-eecEEEEEecCCC-CCccEEEEEEEEcCCCCCCceeEEE
Q psy1415 520 LADPYVKVYLLYKGQRVAK--------KKTHVKKRTLNPV-YNESFVFEVPADN-LDSVSLELLLLDWDRVTKNEVIGRL 589 (622)
Q Consensus 520 ~sDPyV~v~l~~~~~~~~~--------~kT~~~~~tlnP~-wne~f~f~v~~~~-l~~~~L~i~V~D~d~~~~d~~LG~v 589 (622)
.+|.||+.++..++.|... +-+...++-.||. ||-.|.....+.. ..=..|.++||-.|.+|+|-+.|-.
T Consensus 25 ~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GYg 104 (187)
T KOG4027|consen 25 ESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGYG 104 (187)
T ss_pred CCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeeee
Confidence 4578888887543333211 1111122333443 6644444433322 1123499999999999999998877
Q ss_pred EECCC
Q psy1415 590 DLGGD 594 (622)
Q Consensus 590 ~i~L~ 594 (622)
.|.+.
T Consensus 105 ~~hiP 109 (187)
T KOG4027|consen 105 MLHIP 109 (187)
T ss_pred eEecC
Confidence 77765
No 319
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=32.98 E-value=2.1e+02 Score=24.79 Aligned_cols=59 Identities=20% Similarity=0.217 Sum_probs=29.1
Q ss_pred ceeEeeeecCCCCCeeeceeEEcccCcccC-----CCcEEEEEEEeeccCCCCCCCcceEEEEEeccCCCCcceeeEEEE
Q psy1415 349 QKVKTRVLRKTRNPIYNEEFTFTGITPHQL-----KGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFY 423 (622)
Q Consensus 349 ~~~kT~vi~~t~nP~W~e~f~f~~~~~~~l-----~~~~L~~~V~d~d~~~~~d~~~~l~i~v~d~d~~~~d~~iG~~~i 423 (622)
+.+.|.++. ..||.++-+-.|. +..+++ +...+.+.++ ..- ....+.+|.+.+
T Consensus 11 Etq~Tpvv~-G~~p~y~fts~y~-V~~d~~fl~YLq~~~~~lELh-------------------qa~-g~d~~tla~~~i 68 (107)
T PF11618_consen 11 ETQTTPVVR-GLNPFYDFTSQYK-VTMDDLFLHYLQTGSLTLELH-------------------QAL-GSDFETLAAGQI 68 (107)
T ss_dssp --EE---EE-SSS----EEEEEE-E--SHHHHHHHHH--EEEEEE-------------------EE--SS-EEEEEEEEE
T ss_pred eeeccccee-CCCccceeEEEEE-EEcCHHHHHHhhcCCEEEEEE-------------------eec-cCCeEEEEEEEe
Confidence 366677766 7899999888775 555442 3444555555 543 234689999999
Q ss_pred eCCccc
Q psy1415 424 SLQSFE 429 (622)
Q Consensus 424 ~l~~l~ 429 (622)
++..+.
T Consensus 69 ~l~~ll 74 (107)
T PF11618_consen 69 SLRPLL 74 (107)
T ss_dssp --SHHH
T ss_pred echhhh
Confidence 999987
No 320
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=30.56 E-value=39 Score=32.18 Aligned_cols=27 Identities=15% Similarity=0.390 Sum_probs=11.6
Q ss_pred eEeeehhhHHHHHhhhe-eeeeeeeccC
Q psy1415 18 TVLGLGLAGLVFVATVC-LATCYCRRRS 44 (622)
Q Consensus 18 ~~~~~~~~~~~~~~~~~-~~~~~~~~~k 44 (622)
.++|++++++++|+.+. ..+|-|.+.|
T Consensus 80 iivgvi~~Vi~Iv~~Iv~~~Cc~c~~~K 107 (179)
T PF13908_consen 80 IIVGVICGVIAIVVLIVCFCCCCCCLYK 107 (179)
T ss_pred eeeehhhHHHHHHHhHhhheeccccccc
Confidence 45555554443333322 2333455444
No 321
>PF03285 Paralemmin: Paralemmin; InterPro: IPR004965 Paralemmin was identified in the chicken lens as a protein with a molecular weight of 65 kDa (isoform 1) and a splice variant of 60 kDa (isoform 2). Isoform 2 is predominant during infancy and levels of isoform 1 increase with age. Paralemmin is localised to the plasma membrane of fibre cells, and was not detected in the annular pad cells. Its localisation to the short side of the fibre cell and the sites of fibre cell interlocking suggests that paralemmin may play a role in the development of such interdigitating processes []. Palmitoylation is important for localising these proteins to the filopodia of dendritic cells where they have been implicated in the regulation of membrane dynamics and process outgrowth. ; GO: 0008360 regulation of cell shape, 0016020 membrane
Probab=30.33 E-value=57 Score=33.37 Aligned_cols=34 Identities=24% Similarity=0.476 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccce
Q psy1415 107 VKLKEAEARAEFAEKTVKKLQKEVDRLEVSGHTV 140 (622)
Q Consensus 107 ~~lkeae~rae~ae~~~~~l~~~~~~le~~~~~~ 140 (622)
.++.|.|.|+-.-|-++.+||+||+.||.....+
T Consensus 3 rQ~qEDEqKtR~LEesI~RLEkEIe~LE~~es~i 36 (278)
T PF03285_consen 3 RQMQEDEQKTRSLEESIHRLEKEIEALENGESQI 36 (278)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 3567888999999999999999999999987554
No 322
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=30.01 E-value=11 Score=33.84 Aligned_cols=11 Identities=45% Similarity=0.637 Sum_probs=5.0
Q ss_pred eeeeeeeccCC
Q psy1415 35 LATCYCRRRSS 45 (622)
Q Consensus 35 ~~~~~~~~~k~ 45 (622)
+..|+-+||++
T Consensus 18 ~~~~~~rRR~r 28 (130)
T PF12273_consen 18 LFYCHNRRRRR 28 (130)
T ss_pred HHHHHHHHHhh
Confidence 33444444444
No 323
>KOG2189|consensus
Probab=29.57 E-value=64 Score=37.44 Aligned_cols=79 Identities=18% Similarity=0.213 Sum_probs=47.0
Q ss_pred cCCchhccceeccccccCCccccccccccCCChhhhhcCCCCC-ccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1415 43 RSSPLEAKKLALSQMTLKRPTAVRSPAAAGPNSHYLKKSPSPT-YATPVANQRVEEYKRQIKQLAVKLKEAEARAEFAEK 121 (622)
Q Consensus 43 ~k~~e~~~kl~~~e~~l~r~e~~r~~~~e~~~~~~l~~lk~~~-~~~~~~~~~e~~~~~~i~~l~~~lkeae~rae~ae~ 121 (622)
|+.||..|||..+|.++.+++. ... .+. ........--+..|+++..|+.++.|..+-.+.-++
T Consensus 56 rRcdemeRklrfl~~ei~k~~i-~~~--------------~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~ 120 (829)
T KOG2189|consen 56 RRCDEMERKLRFLESEIKKAGI-PLP--------------DLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKA 120 (829)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-CCC--------------CccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3458999999999999998888 443 111 111122233456666777777777766555555555
Q ss_pred HHHHHHHhhhhhccc
Q psy1415 122 TVKKLQKEVDRLEVS 136 (622)
Q Consensus 122 ~~~~l~~~~~~le~~ 136 (622)
+-.+|.+-..-|+..
T Consensus 121 n~~eL~E~~~vl~~t 135 (829)
T KOG2189|consen 121 NYNELLELKYVLEKT 135 (829)
T ss_pred HHHHHHHHHHHHHhh
Confidence 555554444444433
No 324
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=28.79 E-value=1.2e+02 Score=28.76 Aligned_cols=46 Identities=26% Similarity=0.320 Sum_probs=32.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy1415 90 VANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEV 135 (622)
Q Consensus 90 ~~~~~e~~~~~~i~~l~~~lkeae~rae~ae~~~~~l~~~~~~le~ 135 (622)
...++.+.++.-++....-+++|+...+..+.++++|+++|...+-
T Consensus 129 ~~~~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 129 ELEEEEEIYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345566667777776666777777777778888888888876654
No 325
>TIGR03867 MprA_tail MprA protease C-terminal sorting domain. This model describes a protein C-terminal domain that occurs in species of the genus Ralstonia and is predicted to play a role in protein targeting. This sequence, though limited to members of the MprA serine in species distribution, resembles C-terminal sorting sequences of the sortase and exosortase systems, as well as a Shewanella-type C-terminal sequence modeled by TIGR03501. For all such cases, member proteins have homologs in other species with essentially full-length homology, save for the lack of the domain modeled here. All members of the present family are predicted serine proteases
Probab=28.46 E-value=19 Score=22.90 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=12.8
Q ss_pred eehhhHHHHHhhheeeeeeeeccC
Q psy1415 21 GLGLAGLVFVATVCLATCYCRRRS 44 (622)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~k 44 (622)
.+.++++++++.++ |+++||+
T Consensus 7 ~~~~A~Lll~aG~~---~~~rR~r 27 (27)
T TIGR03867 7 APWLAALLLAAGLL---GFARRRR 27 (27)
T ss_pred HHHHHHHHHHHHhh---hHHhhcC
Confidence 35677777777663 5555543
No 326
>PHA02954 EEV membrane glycoprotein; Provisional
Probab=28.40 E-value=46 Score=34.87 Aligned_cols=52 Identities=25% Similarity=0.533 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccc-eeehhhhhhheeeeeeEEEEEeec
Q psy1415 112 AEARAEFAEKTVKKLQKEVDRLEVSGHT-VLGLGLAGLVFAATVCLATCYCRR 163 (622)
Q Consensus 112 ae~rae~ae~~~~~l~~~~~~le~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~ 163 (622)
.|+-|..-|+.|...|.||+.||..-+. ++.+.+.++.++..++|-+|.|..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (317)
T PHA02954 253 DETDLSKLSKDVVQYEQEIESLEATYHIIIVALTIMGVIFLISVIVLVCSCNK 305 (317)
T ss_pred CccccchhhhHHHHHHHHHhhhhceeeEeeeehhhhHHHHhheeeEEEEeccC
Confidence 4555566677788999999999998854 477778888999999999999988
No 327
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=28.12 E-value=23 Score=40.09 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=26.9
Q ss_pred CCCCcccccccccc----------eEeee-hhhHHHHHhhheeeeeeeeccCC
Q psy1415 4 DGPDVQSLEKVSGH----------TVLGL-GLAGLVFVATVCLATCYCRRRSS 45 (622)
Q Consensus 4 ~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~k~ 45 (622)
.||.++++++..-| -|+|. +-.++++|+++++.||+|+..|-
T Consensus 247 ~~~~AqPv~~~a~P~~~s~~~NlWII~gVlvPv~vV~~Iiiil~~~LCRk~K~ 299 (684)
T PF12877_consen 247 QGIVAQPVEKQAEPPAKSPPNNLWIIAGVLVPVLVVLLIIIILYWKLCRKNKL 299 (684)
T ss_pred ccccccccccccCCCCCCCCCCeEEEehHhHHHHHHHHHHHHHHHHHhccccc
Confidence 35778888874422 13443 33455777788889999977554
No 328
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=28.03 E-value=1.8e+02 Score=22.59 Aligned_cols=41 Identities=20% Similarity=0.337 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy1415 96 EEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEVS 136 (622)
Q Consensus 96 ~~~~~~i~~l~~~lkeae~rae~ae~~~~~l~~~~~~le~~ 136 (622)
....+++.....-...++.+-..||.....|+.+|+.|+..
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e 54 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKE 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777778888889999999999999999999998754
No 329
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=27.69 E-value=7.7 Score=30.46 Aligned_cols=17 Identities=47% Similarity=1.013 Sum_probs=8.6
Q ss_pred HHHHHhhheeeeeeeec
Q psy1415 26 GLVFVATVCLATCYCRR 42 (622)
Q Consensus 26 ~~~~~~~~~~~~~~~~~ 42 (622)
++++++.+++..|.|+-
T Consensus 3 gllll~vvll~~clC~l 19 (74)
T PF05083_consen 3 GLLLLAVVLLSACLCRL 19 (74)
T ss_pred chhhHHHHHHHHHHHHH
Confidence 34444445555566654
No 330
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=27.67 E-value=19 Score=37.22 Aligned_cols=19 Identities=21% Similarity=0.539 Sum_probs=15.0
Q ss_pred hHHHHHhhheeeeeeeecc
Q psy1415 25 AGLVFVATVCLATCYCRRR 43 (622)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~ 43 (622)
|=|||||+||+.||=|--|
T Consensus 7 GRVLLVCALCVLWCg~gG~ 25 (291)
T PTZ00459 7 GRVLLVCALCVLWCGAGGR 25 (291)
T ss_pred chHHHHHHHHHHhcCCCCC
Confidence 4578999999999975443
No 331
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=27.51 E-value=2.1e+02 Score=21.95 Aligned_cols=39 Identities=13% Similarity=0.340 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1415 95 VEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRL 133 (622)
Q Consensus 95 e~~~~~~i~~l~~~lkeae~rae~ae~~~~~l~~~~~~l 133 (622)
...++..+..|++.++.+.++-+..+..+..||+-++-+
T Consensus 3 ~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETl 41 (57)
T PF02346_consen 3 IKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETL 41 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 457788999999999999999988888899999888764
No 332
>COG5510 Predicted small secreted protein [Function unknown]
Probab=26.88 E-value=20 Score=25.49 Aligned_cols=17 Identities=41% Similarity=0.589 Sum_probs=13.2
Q ss_pred hhhHHHHHhhheeeeee
Q psy1415 23 GLAGLVFVATVCLATCY 39 (622)
Q Consensus 23 ~~~~~~~~~~~~~~~~~ 39 (622)
.+.++++++|+.+++|-
T Consensus 7 l~i~~vll~s~llaaCN 23 (44)
T COG5510 7 LLIALVLLASTLLAACN 23 (44)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 46677788888899993
No 333
>KOG2397|consensus
Probab=26.65 E-value=1.1e+02 Score=33.65 Aligned_cols=62 Identities=23% Similarity=0.230 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeehhhhhhheeeeeeEEEEEeecCCCccccccccceecccc
Q psy1415 108 KLKEAEARAEFAEKTVKKLQKEVDRLEVSGHTVLGLGLAGLVFAATVCLATCYCRRRTSPLEAKKLALSQMTLK 181 (622)
Q Consensus 108 ~lkeae~rae~ae~~~~~l~~~~~~le~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 181 (622)
+..+|+.-.+.||++++.|+++|+.++++.+.-.|...++..+- .|.+ .....+..++..-+
T Consensus 338 ~a~~ar~~~de~~~~~k~l~~~i~~l~~~~~~~~g~~e~~~~~~--------~c~~----~~~~~Y~Y~~c~~~ 399 (480)
T KOG2397|consen 338 QASEARNELDEAERKLKDLDEEIRELEDELNGDFGLLEFAALKG--------QCFD----RELGEYTYTVCPFK 399 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHhc--------ceee----eccCcEEEEEcccc
Confidence 77888888899999999999999999999999999555554432 3666 45555555544433
No 334
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=26.41 E-value=32 Score=36.31 Aligned_cols=93 Identities=23% Similarity=0.264 Sum_probs=49.8
Q ss_pred EeeehhhHHHHHhhheeeeeeeeccCCchhccceeccccccCCccccccccccCCChhhhhcCCCCCccCcccchhhHHH
Q psy1415 19 VLGLGLAGLVFVATVCLATCYCRRRSSPLEAKKLALSQMTLKRPTAVRSPAAAGPNSHYLKKSPSPTYATPVANQRVEEY 98 (622)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~~kl~~~e~~l~r~e~~r~~~~e~~~~~~l~~lk~~~~~~~~~~~~e~~~ 98 (622)
..|+.+++|++++++.+.|++.--..-..-.+++...+..++- .- .+.++.+.-...
T Consensus 32 g~~l~~~all~aLgLGagg~~f~QqQ~~~~~~~l~a~~~q~~~-~~----------------------~aqe~q~l~~ql 88 (391)
T COG2959 32 GLLLSLAALLLALGLGAGGYYFGQQQNVLQTQELQALQQQLKA-LQ----------------------LAQENQKLLAQL 88 (391)
T ss_pred hhHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH-hh----------------------HHHHHHHHHHHH
Confidence 3445555555555555566555444344555555555544330 00 011111212333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1415 99 KRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE 134 (622)
Q Consensus 99 ~~~i~~l~~~lkeae~rae~ae~~~~~l~~~~~~le 134 (622)
+..+++...++..+|.-.+.-.++..++|+.+..+.
T Consensus 89 ~~~~~~~q~el~~l~~~~~~~~~ql~e~Q~~v~~is 124 (391)
T COG2959 89 ESLIAQQQAELDRLERQLETLQKQLSELQKKVATIS 124 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 555666666777677767776777777777777766
No 335
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=25.72 E-value=23 Score=25.50 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=14.7
Q ss_pred eEeeehhhHHHHHhhheeeeee
Q psy1415 18 TVLGLGLAGLVFVATVCLATCY 39 (622)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~ 39 (622)
+++-+++|+++|+.-+.+-+|-
T Consensus 4 ~V~~iilg~~ll~~LigiCwCQ 25 (49)
T PF05624_consen 4 FVVLIILGALLLLLLIGICWCQ 25 (49)
T ss_pred EEeHHHHHHHHHHHHHHHHHHh
Confidence 4666778888877766654443
No 336
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=25.41 E-value=24 Score=27.50 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=0.9
Q ss_pred heeeeeeeec-cCCchhcc
Q psy1415 33 VCLATCYCRR-RSSPLEAK 50 (622)
Q Consensus 33 ~~~~~~~~~~-~k~~e~~~ 50 (622)
+++..+++|| ||.+|.+=
T Consensus 26 ilLIlf~iyR~rkkdEGSY 44 (64)
T PF01034_consen 26 ILLILFLIYRMRKKDEGSY 44 (64)
T ss_dssp -----------S------S
T ss_pred HHHHHHHHHHHHhcCCCCc
Confidence 3344555555 55555543
No 337
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=25.30 E-value=13 Score=30.11 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=10.7
Q ss_pred eeehhhHHHHHhhheeeeeeeeccC
Q psy1415 20 LGLGLAGLVFVATVCLATCYCRRRS 44 (622)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~k 44 (622)
+|.+++|+++++.+++...+|.||.
T Consensus 3 i~~~~~g~~~ll~~v~~~~~~~rr~ 27 (75)
T PF14575_consen 3 IASIIVGVLLLLVLVIIVIVCFRRC 27 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCTT-
T ss_pred EehHHHHHHHHHHhheeEEEEEeeE
Confidence 3444445444444444444444443
No 338
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=25.02 E-value=2.2e+02 Score=26.27 Aligned_cols=96 Identities=20% Similarity=0.290 Sum_probs=47.6
Q ss_pred cCCccEEEEEEEeecCCCCCCCCCCCCcEEEEEEEe-CCeEee-EeeeeeccC-CCC-CeeecEEEEEecCCCCC-ccEE
Q psy1415 496 QPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLY-KGQRVA-KKKTHVKKR-TLN-PVYNESFVFEVPADNLD-SVSL 570 (622)
Q Consensus 496 ~~~~g~L~V~I~~A~~L~~~d~~g~sDPyV~v~l~~-~~~~~~-~~kT~~~~~-tln-P~wne~f~f~v~~~~l~-~~~L 570 (622)
.+....|+|.|.+.- | .|.....|||+.|++.+ +|.... .+.|.+... ..| -.||...++..+.+.+. +..|
T Consensus 9 ~~g~t~l~v~Iekig-l--kda~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai 85 (147)
T PF14186_consen 9 EPGMTYLSVFIEKIG-L--KDASQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAI 85 (147)
T ss_dssp -TT--EEEEEEEEEE----TTGGG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EE
T ss_pred CCCCceEEEEEEEEE-E--CChHHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEE
Confidence 344556778777755 4 34445679999999875 344333 344655522 123 33665555554444333 5669
Q ss_pred EEEEEEcCCCCCCc-eeEEEEECCC
Q psy1415 571 ELLLLDWDRVTKNE-VIGRLDLGGD 594 (622)
Q Consensus 571 ~i~V~D~d~~~~d~-~LG~v~i~L~ 594 (622)
.+++.++..-.+.- ..+-.-+.++
T Consensus 86 ~fE~kH~K~kk~k~S~kcw~fme~d 110 (147)
T PF14186_consen 86 FFEFKHYKPKKKKTSTKCWAFMELD 110 (147)
T ss_dssp EEEEEEEETTTTCEEEEEEEEEEGG
T ss_pred EEEEEeeeccceeeeeeEEEEEEhh
Confidence 99999977654333 3444445553
No 339
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=24.81 E-value=22 Score=26.27 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=16.3
Q ss_pred EeeehhhHHHHHhhheeeee
Q psy1415 19 VLGLGLAGLVFVATVCLATC 38 (622)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~ 38 (622)
+.||+.||++|++.+++..+
T Consensus 16 igGLi~A~vlfi~Gi~iils 35 (50)
T PF02038_consen 16 IGGLIFAGVLFILGILIILS 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHCT
T ss_pred ccchHHHHHHHHHHHHHHHc
Confidence 56899999999988876654
No 340
>KOG1962|consensus
Probab=24.59 E-value=87 Score=30.79 Aligned_cols=45 Identities=24% Similarity=0.361 Sum_probs=29.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy1415 92 NQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEVS 136 (622)
Q Consensus 92 ~~~e~~~~~~i~~l~~~lkeae~rae~ae~~~~~l~~~~~~le~~ 136 (622)
...-+..+++++....+|+.|++..+.-..+...++.|.|+|-++
T Consensus 157 ~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee 201 (216)
T KOG1962|consen 157 KADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEE 201 (216)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 334445566666666777777777777777777777777777544
No 341
>KOG1962|consensus
Probab=24.02 E-value=1.2e+02 Score=29.95 Aligned_cols=47 Identities=21% Similarity=0.340 Sum_probs=38.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q psy1415 91 ANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEVSG 137 (622)
Q Consensus 91 ~~~~e~~~~~~i~~l~~~lkeae~rae~ae~~~~~l~~~~~~le~~~ 137 (622)
..+..++-++.+..|.+++++-..--|.|+.++..|++..+.+.++-
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Ey 195 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEY 195 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 44556677777888888888888888999999999999999887664
No 342
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=23.76 E-value=1.4e+02 Score=30.31 Aligned_cols=35 Identities=31% Similarity=0.480 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1415 99 KRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRL 133 (622)
Q Consensus 99 ~~~i~~l~~~lkeae~rae~ae~~~~~l~~~~~~l 133 (622)
|-.|+.|..||||.|+|...-|..+.+|...+-++
T Consensus 67 EV~iRHLkakLkes~~~l~dRetEI~eLksQL~RM 101 (305)
T PF15290_consen 67 EVCIRHLKAKLKESENRLHDRETEIDELKSQLARM 101 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56788888888888888765555555554444443
No 343
>PRK04406 hypothetical protein; Provisional
Probab=23.55 E-value=1.7e+02 Score=23.61 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy1415 98 YKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEVS 136 (622)
Q Consensus 98 ~~~~i~~l~~~lkeae~rae~ae~~~~~l~~~~~~le~~ 136 (622)
.+++|..|+.++-=.|...|.-...|..-+++|+.|...
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~q 47 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQ 47 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444444454445556667777776543
No 344
>PRK04406 hypothetical protein; Provisional
Probab=23.40 E-value=2.4e+02 Score=22.80 Aligned_cols=35 Identities=23% Similarity=0.514 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy1415 100 RQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE 134 (622)
Q Consensus 100 ~~i~~l~~~lkeae~rae~ae~~~~~l~~~~~~le 134 (622)
..+..++.++.+-|.|.-|.|..+..|-..+-.-.
T Consensus 4 ~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq 38 (75)
T PRK04406 4 KTIEQLEERINDLECQLAFQEQTIEELNDALSQQQ 38 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888888877776665543
No 345
>PRK04325 hypothetical protein; Provisional
Probab=23.39 E-value=2.3e+02 Score=22.77 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy1415 98 YKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEVS 136 (622)
Q Consensus 98 ~~~~i~~l~~~lkeae~rae~ae~~~~~l~~~~~~le~~ 136 (622)
.+++|..|+.|+-=.|...|.-...|.+-+++|+.|+..
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~q 45 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQ 45 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666655666665555566667777776643
No 346
>PRK00736 hypothetical protein; Provisional
Probab=23.02 E-value=2e+02 Score=22.76 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy1415 99 KRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEVS 136 (622)
Q Consensus 99 ~~~i~~l~~~lkeae~rae~ae~~~~~l~~~~~~le~~ 136 (622)
+++|..|+.|+--.|...|.-...|.+-+++|+.|...
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~q 41 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKK 41 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777666776666666677777777776643
No 347
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=22.65 E-value=2.1e+02 Score=24.58 Aligned_cols=48 Identities=23% Similarity=0.311 Sum_probs=33.4
Q ss_pred cccchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy1415 89 PVANQRVEEYKRQIKQLAVKL-KEAEARAEFAEKTVKKLQKEVDRLEVS 136 (622)
Q Consensus 89 ~~~~~~e~~~~~~i~~l~~~l-keae~rae~ae~~~~~l~~~~~~le~~ 136 (622)
+++.+..+..+.++..|+..| .||..+...|.+.-..++...+.|+..
T Consensus 11 ~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~ 59 (100)
T PF06428_consen 11 EEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQ 59 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788899999999998 888888877775544444444444433
No 348
>PRK00295 hypothetical protein; Provisional
Probab=22.42 E-value=2.1e+02 Score=22.64 Aligned_cols=38 Identities=11% Similarity=0.265 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy1415 99 KRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEVS 136 (622)
Q Consensus 99 ~~~i~~l~~~lkeae~rae~ae~~~~~l~~~~~~le~~ 136 (622)
+++|..|+.|+--.|...|.-...|.+-+++|+.|+..
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~q 41 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQ 41 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777778888887644
No 349
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=22.15 E-value=1.7e+02 Score=31.52 Aligned_cols=45 Identities=31% Similarity=0.499 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q psy1415 93 QRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEVSG 137 (622)
Q Consensus 93 ~~e~~~~~~i~~l~~~lkeae~rae~ae~~~~~l~~~~~~le~~~ 137 (622)
.+-+.-|+.|..+++++.+.+...+.-+..+..++..++++|+..
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555555666666666555555555666667777777777653
No 350
>KOG2419|consensus
Probab=21.33 E-value=37 Score=38.26 Aligned_cols=54 Identities=9% Similarity=-0.076 Sum_probs=39.2
Q ss_pred ceeeecCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCcccCCCeEEEEeccccCCCc
Q psy1415 198 YLKKSPSPTYATPVASLVNSPTGSTNSNNGAGSNSHSPIQPCVALPGTVVITENEKAAPL 257 (622)
Q Consensus 198 ~vk~~~~p~~~~~~kT~v~~~t~nP~~~E~~~f~~~~~~~~~~~~L~~~V~d~d~~~~dd 257 (622)
++-.. .+.+..+|+.-+++.+|+|||+ .|. ...|+....|.+.|.++++++-.|
T Consensus 308 ~~its---f~~~~frt~~~~~~e~piyNe~-~~E--~~~Fqsn~~l~~kiv~~~~~~lnd 361 (975)
T KOG2419|consen 308 LAITS---FGEQTFRTEISDDTEKPIYNED-ERE--DSDFQSNRYLGNKIVGYCELDLND 361 (975)
T ss_pred hheee---cchhhhhhhhhccccccccccc-ccc--cccchhhHHHhhhccccccccccc
Confidence 55444 3567789999999999999998 333 334556677888888888765444
No 351
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.20 E-value=1.7e+02 Score=28.07 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1415 93 QRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEV 130 (622)
Q Consensus 93 ~~e~~~~~~i~~l~~~lkeae~rae~ae~~~~~l~~~~ 130 (622)
+..+..+++++.|..+|+++|.-.+.-..+.+.+++|-
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34456677788888888777666666666666666553
No 352
>PRK02119 hypothetical protein; Provisional
Probab=20.30 E-value=3e+02 Score=22.06 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy1415 99 KRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEV 135 (622)
Q Consensus 99 ~~~i~~l~~~lkeae~rae~ae~~~~~l~~~~~~le~ 135 (622)
+++|..|+.|+-=.|...+.-...|.+-+++|+.|..
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ 44 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQV 44 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554455555545556666777777653
Done!