RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1415
(622 letters)
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 308 bits (790), Expect = e-101
Identities = 107/324 (33%), Positives = 167/324 (51%), Gaps = 56/324 (17%)
Query: 296 AEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-QKVKTR 354
A G+I F ++Y + LVV +++ DL KD +G SDPYVK++LLPD+ +K +T+
Sbjct: 2 AGAPCGRISFALRYLYGSDQLVVRILQALDLPAKD-SNGFSDPYVKIYLLPDRKKKFQTK 60
Query: 355 VLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSR 414
V RKT NPI+NE F F + +L LHF V+ FDR+SR D+
Sbjct: 61 VHRKTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDL---------------- 103
Query: 415 DDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDI 474
+G+V L ++ ++ RDI
Sbjct: 104 ---IGQV------------VLDNLLELAEQ--------------------PPDRPLWRDI 128
Query: 475 QPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQ 534
+ GE+ SLC+ P A T+ ++KA NL MD+TG +DPYVK L+ +G+
Sbjct: 129 LEGGS--EKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGR 186
Query: 535 RVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGD 594
R+ K+KT +KK TLNP YNE+ VF+V +++++V L + ++D+D + NEVIG +G +
Sbjct: 187 RLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPE 246
Query: 595 KSSGTALTHWTDVCNSPRRQIAEW 618
+ HW ++ +PR+ + W
Sbjct: 247 AADPHGREHWAEMLANPRKPVEHW 270
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 306 bits (785), Expect = e-100
Identities = 120/324 (37%), Positives = 181/324 (55%), Gaps = 58/324 (17%)
Query: 296 AEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-QKVKTR 354
KLG++ + + Y + N L+V +I+ +L D G+SDPYVKV LLPDK +K +T+
Sbjct: 1 GSEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALD-MGGTSDPYVKVFLLPDKKKKFETK 59
Query: 355 VLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSR 414
V RKT NP++NE+FTF + +L G TL V+ FDR+S+ DI
Sbjct: 60 VHRKTLNPVFNEQFTF-KVPYSELAGKTLVMAVYDFDRFSKHDI---------------- 102
Query: 415 DDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDI 474
+GE + + +GH RD+
Sbjct: 103 ------------------------------------IGEFKVPM-NTVDFGHVTEEWRDL 125
Query: 475 QPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQ 534
Q + + + G+I SL + P A + T+V+L+A+NL KMDV GL+DPYVK++L+ G+
Sbjct: 126 QSAE-KEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGK 184
Query: 535 RVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGD 594
R+ KKKT +KK TLNP YNESF FEVP + + V + + +LD+D++ KN+ IG++ +G +
Sbjct: 185 RLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN 244
Query: 595 KSSGTALTHWTDVCNSPRRQIAEW 618
S+G L HW+D+ +PRR IA+W
Sbjct: 245 -STGAELRHWSDMLANPRRPIAQW 267
Score = 110 bits (277), Expect = 3e-27
Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 6/112 (5%)
Query: 292 CDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV 351
+ + KLG I F ++Y L V +++ ++L D G SDPYVK+HL+ + +++
Sbjct: 128 AEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMD-VGGLSDPYVKIHLMQNGKRL 186
Query: 352 ---KTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IG 399
KT + + T NP YNE F+F + Q++ + V +D+ ++D IG
Sbjct: 187 KKKKTTIKKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIG 237
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 209 bits (534), Expect = 4e-65
Identities = 76/136 (55%), Positives = 105/136 (77%), Gaps = 1/136 (0%)
Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 542
GRGE+L+SLC+Q N T+VVLKAR+LPK DV+GL+DPYVKV L + +R++KKKTH
Sbjct: 13 PSGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTH 72
Query: 543 VKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALT 602
VKK T N V+NE FVF++P ++L+ +S+E L+LD +R ++NEVIGRL LG + G+
Sbjct: 73 VKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT-AEGSGGG 131
Query: 603 HWTDVCNSPRRQIAEW 618
HW ++C+ PRRQIA+W
Sbjct: 132 HWKEICDFPRRQIAKW 147
Score = 122 bits (308), Expect = 8e-33
Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV---KTRV 355
G++ + YQ N L V V+K R L D SG SDPYVKV+L K+++ KT V
Sbjct: 15 GRGELLVSLCYQSTTNTLTVVVLKARHLPKSD-VSGLSDPYVKVNLYHAKKRISKKKTHV 73
Query: 356 LRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTL 402
+ T N ++NE F F I L+ ++ F+V +R SR++ IG +
Sbjct: 74 KKCTPNAVFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRLV 120
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 207 bits (529), Expect = 4e-64
Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 465 GHSLSFCRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPY 524
++ + Q + + RG+IL+SL + + +++ +L MD G +DP+
Sbjct: 3 ARGMALYEEEQVERIG-DIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPF 61
Query: 525 VKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE 584
VK++L + AK KT +KK+TLNP +NE F +++ +L SL++ + D+D N+
Sbjct: 62 VKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSND 121
Query: 585 VIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLT 620
IG LG + G L HW + + ++I W
Sbjct: 122 YIGGCQLGIS-AKGERLKHWYECLKNKDKKIERWHQ 156
Score = 123 bits (311), Expect = 4e-33
Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%)
Query: 278 SDDSCALVNKETVDCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSD 337
S AL +E V+ G+ E + G+I + Y ++ L+V +I+C L D +G SD
Sbjct: 2 SARGMALYEEEQVERIGDIE-ERGKILVSLMYSTQQGGLIVGIIRCVHLAAMD-ANGYSD 59
Query: 338 PYVKVHLLPDKQKV---KTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYS 394
P+VK+ L PD K KT++ +KT NP +NEEF + I L +L V+ +D
Sbjct: 60 PFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGK 118
Query: 395 RDD-IGSTL 402
+D IG
Sbjct: 119 SNDYIGGCQ 127
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 206 bits (525), Expect = 7e-64
Identities = 62/135 (45%), Positives = 95/135 (70%), Gaps = 1/135 (0%)
Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
RGE+LLSLC+ P+AN + ++KARNL MD+ G +DPYVKV+L+YK +RV KKKT KK
Sbjct: 2 RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKK 61
Query: 546 RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWT 605
R LNP++NESF F++P + L ++ + ++D D++++N+VIG++ L S + HW
Sbjct: 62 RNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWK-SGPGEVKHWK 120
Query: 606 DVCNSPRRQIAEWLT 620
D+ PR+ +A+W
Sbjct: 121 DMIARPRQPVAQWHQ 135
Score = 122 bits (307), Expect = 9e-33
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
Query: 300 LGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV---KTRVL 356
G++ + Y N ++V +IK R+L D G+SDPYVKV L+ ++V KT
Sbjct: 2 RGELLLSLCYNPSANSIIVNIIKARNLKAMD-IGGTSDPYVKVWLMYKDKRVEKKKTVTK 60
Query: 357 RKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTL 402
++ NPI+NE F F I +L+ +T+ V D+ SR+D IG
Sbjct: 61 KRNLNPIFNESFAFD-IPTEKLRETTIIITVMDKDKLSRNDVIGKIY 106
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 201 bits (512), Expect = 8e-62
Identities = 67/139 (48%), Positives = 100/139 (71%), Gaps = 1/139 (0%)
Query: 482 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKT 541
+ G+I SL + P A + T+V+L+A+NL KMDV GL+DPYVK++L+ G+R+ KKKT
Sbjct: 7 ILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKT 66
Query: 542 HVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTAL 601
+KK TLNP YNESF FEVP + + V + + +LD+D++ KN+ IG++ +G + S+G L
Sbjct: 67 TIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN-STGAEL 125
Query: 602 THWTDVCNSPRRQIAEWLT 620
HW+D+ +PRR IA+W T
Sbjct: 126 RHWSDMLANPRRPIAQWHT 144
Score = 119 bits (301), Expect = 8e-32
Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 7/111 (6%)
Query: 294 GNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV-- 351
G E KLG I F ++Y L V +++ ++L D G SDPYVK+HL+ + +++
Sbjct: 6 GILE-KLGDICFSLRYVPTAGKLTVVILEAKNLKKMD-VGGLSDPYVKIHLMQNGKRLKK 63
Query: 352 -KTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGS 400
KT + + T NP YNE F+F + Q++ + V +D+ ++D IG
Sbjct: 64 KKTTIKKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGK 113
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 152 bits (386), Expect = 7e-44
Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 542
++ RG I L + + + V A+NL MD GL+DPYVK+ L+ + +K+KT
Sbjct: 1 TEKRGRIYLKA--EVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTK 58
Query: 543 VKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALT 602
+ TLNP +NESF F++ + D L + + DWDR T+N+ +G L G + +
Sbjct: 59 TIRSTLNPQWNESFTFKLKPSDKDRR-LSVEIWDWDRTTRNDFMGSLSFGVSELMKMPAS 117
Query: 603 HW 604
W
Sbjct: 118 GW 119
Score = 121 bits (305), Expect = 1e-32
Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRV 355
K G+I +K + + L VTV ++L D P+G SDPYVK+ L+PD K KT+
Sbjct: 3 KRGRI--YLKAEVTDEKLHVTVRDAKNLIPMD-PNGLSDPYVKLKLIPDPKNESKQKTKT 59
Query: 356 LRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTLHFVVFSFDRYSR 414
+R T NP +NE FTF K L ++ +DR +R+D +GS + F +
Sbjct: 60 IRSTLNPQWNESFTFKL--KPSDKDRRLSVEIWDWDRTTRNDFMGS----LSFGVSELMK 113
Query: 415 DDIVGEVFYSLQSFE 429
G +Y L + E
Sbjct: 114 MPASG--WYKLLNQE 126
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 151 bits (384), Expect = 2e-43
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 542
+ RG I + +VV A+NL MD GL+DPYVK+ L+ + +K+KT
Sbjct: 16 MERRGRIYIQAHIDR--EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTK 73
Query: 543 VKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALT 602
K +LNP +NE+F F++ + D L + + DWD ++N+ +G L G + +
Sbjct: 74 TIKCSLNPEWNETFRFQLKESDKDR-RLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVD 132
Query: 603 HW 604
W
Sbjct: 133 GW 134
Score = 121 bits (306), Expect = 1e-32
Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRV 355
+ G+I+ + VL+V V ++L D P+G SDPYVK+ L+PD K KT+
Sbjct: 18 RRGRIYIQAHIDR--EVLIVVVRDAKNLVPMD-PNGLSDPYVKLKLIPDPKSESKQKTKT 74
Query: 356 LRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTLHFVVFSFDRYSR 414
++ + NP +NE F F K L ++ +D SR+D +GS + F +
Sbjct: 75 IKCSLNPEWNETFRFQ--LKESDKDRRLSVEIWDWDLTSRNDFMGS----LSFGISELQK 128
Query: 415 DDIVGEVFYSLQSFE 429
+ + ++ L S E
Sbjct: 129 AGV--DGWFKLLSQE 141
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting
molecule, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 141
Score = 150 bits (382), Expect = 3e-43
Identities = 31/134 (23%), Positives = 61/134 (45%), Gaps = 3/134 (2%)
Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 542
G++ + L + ++ + +L A++LP + +PYVK+Y L K++T
Sbjct: 4 GSSGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTK 63
Query: 543 VKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRV--TKNEVIGRLDLGGDKSSGT 599
K+TL P +N++F++ V LE+ L D RV ++E +G + + + +
Sbjct: 64 TVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLD 123
Query: 600 ALTHWTDVCNSPRR 613
HW +
Sbjct: 124 DEPHWYKLQTHDSG 137
Score = 136 bits (344), Expect = 7e-38
Identities = 31/140 (22%), Positives = 69/140 (49%), Gaps = 13/140 (9%)
Query: 294 GNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---K 350
G++ GQ+ K+ + + + L+VT++ +DL ++ +PYVK++ LPD+ K
Sbjct: 1 GSSGSSGGQLSIKLWFDKVGHQLIVTILGAKDLPSRE-DGRPRNPYVKIYFLPDRSDKNK 59
Query: 351 VKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD---IGSTLHFVVF 407
+T+ ++KT P +N+ F ++ + + + L ++ R ++ +G ++
Sbjct: 60 RRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGE----ILI 115
Query: 408 SFDRYSRDDIVGEVFYSLQS 427
+ DD +Y LQ+
Sbjct: 116 ELETALLDDE--PHWYKLQT 133
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 146 bits (371), Expect = 1e-41
Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 5/138 (3%)
Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVT-GLADPYVKVYLLYKGQRVAKKKTHVK 544
G I SL ++ + V + L D ++PYVK YLL R K+KT +K
Sbjct: 9 TGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIK 68
Query: 545 KRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLG-GDKSSGTALTH 603
+ T+NP+Y+E+ +E+P L +L+ + R +N +G ++ L H
Sbjct: 69 RDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDH 128
Query: 604 WTDV---CNSPRRQIAEW 618
+ ++
Sbjct: 129 CLPLHGKISAESEGHHHH 146
Score = 141 bits (358), Expect = 7e-40
Identities = 42/113 (37%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 294 GNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---K 350
GN G+I F +KY+++ LVV V +C L D S+PYVK +LLPDK K
Sbjct: 4 GNIF-VTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGK 62
Query: 351 VKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTL 402
KT + R T NP+Y+E + I L TL F V+ R+ R+ +G
Sbjct: 63 RKTSIKRDTVNPLYDETLRY-EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAE 114
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain,
neurotransmitter release, transport protein; 1.41A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 129
Score = 145 bits (367), Expect = 2e-41
Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
G++ + L + ++ + +L A++LP + +PYVK+Y L K++T K
Sbjct: 4 SGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVK 63
Query: 546 RTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRV--TKNEVIGRLDLGGDKSSGTALT 602
+TL P +N++F++ V LE+ L D RV ++E +G + + + +
Sbjct: 64 KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEP 123
Query: 603 HW 604
HW
Sbjct: 124 HW 125
Score = 134 bits (340), Expect = 1e-37
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 13/132 (9%)
Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLR 357
GQ+ K+ + + + L+VT++ +DL ++ +PYVK++ LPD+ K +T+ ++
Sbjct: 5 GQLSIKLWFDKVGHQLIVTILGAKDLPSRE-DGRPRNPYVKIYFLPDRSDKNKRRTKTVK 63
Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD---IGSTLHFVVFSFDRYSR 414
KT P +N+ F ++ + + + L ++ R ++ +G ++ +
Sbjct: 64 KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGE----ILIELETALL 119
Query: 415 DDIVGEVFYSLQ 426
DD +Y LQ
Sbjct: 120 DDE--PHWYKLQ 129
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 144 bits (365), Expect = 6e-41
Identities = 51/106 (48%), Positives = 69/106 (65%), Gaps = 2/106 (1%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-QKVKTRVLR 357
LG +FF ++Y + VV + + R L D S +SDPY+K+ +LP+K KVKTRVLR
Sbjct: 7 GLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLR 66
Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTL 402
KT +P ++E FTF GI Q++ LHF + SFDR+SRDD IG L
Sbjct: 67 KTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVL 112
Score = 135 bits (342), Expect = 1e-37
Identities = 38/134 (28%), Positives = 73/134 (54%), Gaps = 6/134 (4%)
Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGL-ADPYVKVYLLYKGQRVAKKKT 541
S G G + SL + F + + +AR LP MD + +DPY+K+ +L + + K KT
Sbjct: 5 SSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKH--KVKT 62
Query: 542 HVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNEVIG--RLDLGGDKSSG 598
V ++TL+P ++E+F F +P + ++L +L +DR +++++IG + L G + S
Sbjct: 63 RVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE 122
Query: 599 TALTHWTDVCNSPR 612
+ ++ + P
Sbjct: 123 GKMLMNREIISGPS 136
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle,
glycoprotein, lipoprotein, membrane, metal- binding,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Length = 143
Score = 144 bits (366), Expect = 6e-41
Identities = 42/126 (33%), Positives = 73/126 (57%), Gaps = 3/126 (2%)
Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
G++ SL + N+ + +++A LP +D+ G +DPYVKV+LL ++ K +T V +
Sbjct: 20 LGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKVHR 77
Query: 546 RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLG-GDKSSGTALTHW 604
+TLNPV+NE F F+VP L +L + + D+DR +K+++IG + G W
Sbjct: 78 KTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEW 137
Query: 605 TDVCNS 610
D+ ++
Sbjct: 138 RDLQSA 143
Score = 135 bits (342), Expect = 1e-37
Identities = 50/122 (40%), Positives = 72/122 (59%), Gaps = 5/122 (4%)
Query: 283 ALVNKETVDCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKV 342
+ D E KLG++ + + Y + N L+V +I+ +L D G+SDPYVKV
Sbjct: 4 GIGGGGGGILDSMVE-KLGKLQYSLDYDFQNNQLLVGIIQAAELPALD-MGGTSDPYVKV 61
Query: 343 HLLPDK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGS 400
LLPDK +K +T+V RKT NP++NE+FTF + +L G TL V+ FDR+S+ D IG
Sbjct: 62 FLLPDKKKKFETKVHRKTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGE 120
Query: 401 TL 402
Sbjct: 121 FK 122
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 142 bits (361), Expect = 3e-40
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 4/132 (3%)
Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 542
G+I L++ N+ +VV RNL G +DPYV++YLL +R ++KTH
Sbjct: 7 GSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTH 65
Query: 543 VKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE--VIGRLDLG-GDKSSGT 599
V K+TLNPV+++SF F V + +L++ + + + ++G++ + +
Sbjct: 66 VSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAK 125
Query: 600 ALTHWTDVCNSP 611
T W D+
Sbjct: 126 GWTQWYDLTEDS 137
Score = 130 bits (328), Expect = 1e-35
Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 9/116 (7%)
Query: 293 DGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ--- 349
G++ LGQI I++ + N L+V V CR+L SDPYV+++LLPDK+
Sbjct: 3 SGSSGSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFS--EDGSDPYVRMYLLPDKRRSG 60
Query: 350 KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD---IGSTL 402
+ KT V +KT NP++++ F F+ ++ +++ TL V + + D +G L
Sbjct: 61 RRKTHVSKKTLNPVFDQSFDFS-VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVL 115
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 142 bits (361), Expect = 3e-40
Identities = 45/114 (39%), Positives = 68/114 (59%), Gaps = 3/114 (2%)
Query: 291 DCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK-Q 349
+ LG+I F + Y +E+ L V ++K ++L KD SG+SDP+VK++LLPDK
Sbjct: 3 SGSSGSRENLGRIQFSVGYNFQESTLTVKIMKAQELPAKD-FSGTSDPFVKIYLLPDKKH 61
Query: 350 KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTL 402
K++T+V RK NP +NE F F G ++ L+ V +DR+SR+D IG
Sbjct: 62 KLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVS 115
Score = 133 bits (336), Expect = 8e-37
Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 4/125 (3%)
Query: 484 QGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHV 543
+ G I S+ + + T+ ++KA+ LP D +G +DP+VK+YLL + K +T V
Sbjct: 10 ENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLL--PDKKHKLETKV 67
Query: 544 KKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNEVIGRLDLG-GDKSSGTAL 601
K++ LNP +NE+F+FE P + + L L +LD+DR ++N+ IG + +
Sbjct: 68 KRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQ 127
Query: 602 THWTD 606
T W D
Sbjct: 128 TFWKD 132
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 142 bits (361), Expect = 3e-40
Identities = 42/130 (32%), Positives = 75/130 (57%), Gaps = 3/130 (2%)
Query: 482 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKT 541
+ + G++ SL + N+ + +++A LP +D+ G +DPYVKV+LL ++ K +T
Sbjct: 24 EEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFET 81
Query: 542 HVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLG-GDKSSGTA 600
V ++TLNPV+NE F F+VP L +L + + D+DR +K+++IG + G
Sbjct: 82 KVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHV 141
Query: 601 LTHWTDVCNS 610
W D+ ++
Sbjct: 142 TEEWRDLQSA 151
Score = 137 bits (346), Expect = 4e-38
Identities = 50/127 (39%), Positives = 75/127 (59%), Gaps = 4/127 (3%)
Query: 278 SDDSCALVNKETVDCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSD 337
S +++ + E KLG++ + + Y + N L+V +I+ +L D G+SD
Sbjct: 6 SGGGGGILDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALD-MGGTSD 64
Query: 338 PYVKVHLLPDK-QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRD 396
PYVKV LLPDK +K +T+V RKT NP++NE+FTF + +L G TL V+ FDR+S+
Sbjct: 65 PYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKH 123
Query: 397 D-IGSTL 402
D IG
Sbjct: 124 DIIGEFK 130
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 142 bits (360), Expect = 4e-40
Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 288 ETVDCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD 347
E D + LG + F + Y + + L T+I+ + L D +G +DPYVK+HLLP
Sbjct: 3 EANSYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMD-SNGLADPYVKLHLLPG 61
Query: 348 ---KQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTL 402
K++T+ LR TRNP++NE + GIT ++ TL V D++ ++ IG T
Sbjct: 62 ASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETR 120
Score = 135 bits (343), Expect = 1e-37
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Query: 482 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKT 541
++ G + SL + + +++A+ L MD GLADPYVK++LL + K +T
Sbjct: 11 QATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRT 70
Query: 542 HVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTA 600
+ T NPV+NE+ + + +++ +L + + D D+ NE IG K
Sbjct: 71 KTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQ 130
Query: 601 LTHWT 605
++
Sbjct: 131 RKNFN 135
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 136 bits (345), Expect = 5e-38
Identities = 26/137 (18%), Positives = 55/137 (40%), Gaps = 15/137 (10%)
Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 542
+ +G L L + +++ + L G DPYVK+ L+ + R+ +KT
Sbjct: 10 HKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQ 68
Query: 543 VKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTK-NEVIGRLDLGGDKSSGTAL 601
+P ++E F F V ++ L + + + ++ + +IG + G +
Sbjct: 69 TVPDCRDPAFHEHFFFPVQEEDDQK-RLLVTVWNRASQSRQSGLIGCMSFG--------V 119
Query: 602 THWTDVCNSPRRQIAEW 618
P ++I+ W
Sbjct: 120 KSLLT----PDKEISGW 132
Score = 122 bits (308), Expect = 8e-33
Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 14/148 (9%)
Query: 294 GNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV-- 351
++ G ++ ++ VL++ +I+ + L K G+ DPYVK+ L+P+ ++
Sbjct: 7 HHSHKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ--PGTCDPYVKISLIPEDSRLRH 64
Query: 352 -KTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD--IGSTLHFVVFS 408
KT+ + R+P ++E F F + L V++ SR IG + F
Sbjct: 65 QKTQTVPDCRDPAFHEHFFFPV--QEEDDQKRLLVTVWNRASQSRQSGLIGC----MSFG 118
Query: 409 FDRYSRDDIVGEVFYSLQSFETYGSTLH 436
D +Y L E G T H
Sbjct: 119 VKSLLTPDKEISGWYYLLG-EHLGRTKH 145
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 135 bits (342), Expect = 1e-37
Identities = 25/131 (19%), Positives = 52/131 (39%), Gaps = 3/131 (2%)
Query: 482 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLL-YKGQRVAKKK 540
++ G I ++L + +F I++++ NL + ++V +L +
Sbjct: 25 EAVGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFR 84
Query: 541 THVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIG--RLDLGGDKSSG 598
T + V+NE F + L +L + + DR E +G ++ L SG
Sbjct: 85 TRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSG 144
Query: 599 TALTHWTDVCN 609
T W ++ +
Sbjct: 145 ERSTRWYNLLS 155
Score = 127 bits (321), Expect = 2e-34
Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 15/160 (9%)
Query: 277 DSDDSC----ALVNKETVDCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTP 332
S S D D + +I +KY EK + +I+ +L
Sbjct: 2 SSGSSGVQRLGASEAAAFDSDESEAVGATRIQIALKYDEKNKQFAILIIQLSNLSALL-Q 60
Query: 333 SGSSDPYVKVHLLPDKQKV----KTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVF 388
++V +LP + +TR L + ++NE F ++ L TL V
Sbjct: 61 QQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV-SMSYPALHQKTLRVDVC 119
Query: 389 SFDRYSRDD-IGSTLHFVVFSFDRYSRDDIVGEVFYSLQS 427
+ DR ++ +G S R +Y+L S
Sbjct: 120 TTDRSHLEECLGG----AQISLAEVCRSGERSTRWYNLLS 155
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 133 bits (336), Expect = 9e-37
Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 9/120 (7%)
Query: 291 DCDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDT------PSGSSDPYVKVHL 344
++ +LG + F +Y N L V VI+ RDL + S+PYVK+ L
Sbjct: 3 SGSSGSKYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICL 62
Query: 345 LPDKQ-KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTL 402
LPD++ +T V RKT+ P++ E +TF I + + TL V FD++SR IG
Sbjct: 63 LPDQKNSKQTGVKRKTQKPVFEERYTFE-IPFLEAQRRTLLLTVVDFDKFSRHCVIGKVS 121
Score = 127 bits (322), Expect = 7e-35
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 9/130 (6%)
Query: 482 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKM-------DVTGLADPYVKVYLLYKGQ 534
G + S + N T+ V++AR+LP ++PYVK+ LL +
Sbjct: 8 SKYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQK 67
Query: 535 RVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGD 594
K+T VK++T PV+ E + FE+P +L L ++D+D+ +++ VIG++ +
Sbjct: 68 N--SKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLC 125
Query: 595 KSSGTALTHW 604
+ HW
Sbjct: 126 EVDLVKGGHW 135
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 131 bits (332), Expect = 2e-36
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRV 355
G + + Y+ L + V+ +DL +D +PYVK +LLPD K KT++
Sbjct: 7 GSGAVKLSVSYRN--GTLFIMVMHIKDLVTED--GADPNPYVKTYLLPDTHKTSKRKTKI 62
Query: 356 LRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTL 402
RKTRNP +NE ++G + L+ L V S + + +G
Sbjct: 63 SRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGIT 110
Score = 128 bits (325), Expect = 2e-35
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 482 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKT 541
G G + LS+ ++ I+V+ ++L D +PYVK YLL + +K+KT
Sbjct: 4 HHHGSGAVKLSVSYRN--GTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKT 60
Query: 542 HVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNEVIGRLDLG-GDKSSGT 599
+ ++T NP +NE V+ + L L+L +L + + +N +G + L D +
Sbjct: 61 KISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSK 120
Query: 600 ALTHWTD 606
W
Sbjct: 121 ETVKWYQ 127
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 130 bits (330), Expect = 5e-36
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLL---------YKGQRV 536
GEI L + + I +L+ARNL D G +DP+VKVYLL
Sbjct: 6 TGEIQLQINYDL--GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAE 63
Query: 537 AKKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNEVIGRLDLG-GD 594
K++T +++LNP +N++ +++ + + L +LE+ + D+DR + N+ +G + +
Sbjct: 64 YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 123
Query: 595 KSSGTALTHW 604
S W
Sbjct: 124 TSHLDNTPRW 133
Score = 126 bits (318), Expect = 3e-34
Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 16/115 (13%)
Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ----------- 349
G+I +I Y L++ +++ R+L +D +G SDP+VKV+LLP +
Sbjct: 7 GEIQLQINYDLGN--LIIHILQARNLVPRD-NNGYSDPFVKVYLLPGRGQVMVVQNASAE 63
Query: 350 -KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTL 402
K +T+ ++K+ NP +N+ + I+ QL TL V+ +DR+S +D +G L
Sbjct: 64 YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVL 118
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 130 bits (328), Expect = 1e-35
Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 5/130 (3%)
Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 542
++ L + + L+A + G D YV+ + + V + +T
Sbjct: 9 WNQAPKLHYCLDYDCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSV-EAQTA 64
Query: 543 VKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLG-GDKSSGTAL 601
+KKR L+ + E V + + L + +L L L DR +++ V G L LG S
Sbjct: 65 LKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGA 124
Query: 602 THWTDVCNSP 611
W ++ S
Sbjct: 125 AQWGELKTSG 134
Score = 127 bits (322), Expect = 6e-35
Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 8/109 (7%)
Query: 297 EGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD--KQKVKTR 354
+ ++ + + Y ++ L VT ++ G D YV+ + + +T
Sbjct: 9 WNQAPKLHYCLDYDCQKAELFVTRLEAVTS----NHDGGCDCYVQGSVANRTGSVEAQTA 64
Query: 355 VLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTL 402
+ ++ + + E + +L +TL + + DR+SR G
Sbjct: 65 LKKRQLHTTWEEGLVL-PLAEEELPTATLTLTLRTCDRFSRHSVAGELR 112
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 129 bits (327), Expect = 4e-35
Identities = 33/135 (24%), Positives = 66/135 (48%), Gaps = 9/135 (6%)
Query: 473 DIQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVT-GLADPYVKVYLLY 531
+ R + + G+I + + + + + V++AR+L + + PYVKVYLL
Sbjct: 6 QLVGRQ-TLATPAMGDIQIGMEDK--KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLE 62
Query: 532 KGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLL-LDWDRVTKNEVIGRLD 590
G +AKKKT + ++TL+P+Y +S VF+ L++++ D+ R+ +G
Sbjct: 63 NGACIAKKKTRIARKTLDPLYQQSLVFDES---PQGKVLQVIVWGDYGRMDHKCFMGVAQ 119
Query: 591 LG-GDKSSGTALTHW 604
+ + + + W
Sbjct: 120 ILLEELDLSSMVIGW 134
Score = 117 bits (294), Expect = 1e-30
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 11/112 (9%)
Query: 296 AEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV---K 352
A +G I ++ ++ L V VI+ R L K + PYVKV+LL + + K
Sbjct: 14 ATPAMGDIQIGMEDKK--GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKK 71
Query: 353 TRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHF-VVFSFDRYSRDD-IGSTL 402
TR+ RKT +P+Y + F +G L V + R +G
Sbjct: 72 TRIARKTLDPLYQQSLVF----DESPQGKVLQVIVWGDYGRMDHKCFMGVAQ 119
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 126 bits (319), Expect = 4e-34
Identities = 43/210 (20%), Positives = 68/210 (32%), Gaps = 58/210 (27%)
Query: 309 YQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD----KQKVKTRVLRKTRNPIY 364
+ + V+ V VI L KD G+SDPYV+V L V+T+ ++K+ NP +
Sbjct: 3 HNDDTRVVRVKVIAGIGLAKKD-ILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKW 61
Query: 365 NEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYS 424
NEE F + + F VF +R +RDD +G+V
Sbjct: 62 NEEILFRVLPQRH-----------------------RILFEVFDENRLTRDDFLGQVDVP 98
Query: 425 LQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQ 484
L L + +D KS+
Sbjct: 99 LY------------------------------PLPTENPRMERPYTFKDFVLHPRSHKSR 128
Query: 485 GRGEILLSLCWQPAANRFTIVVLKARNLPK 514
+G + L + + P +A L
Sbjct: 129 VKGYLRLKMTYLPKNGSEDENADQAEELEP 158
Score = 109 bits (275), Expect = 4e-28
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 495 WQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLL-YKGQRVAKKKTHVKKRTLNPVYN 553
+ V+ L K D+ G +DPYV+V L + +T K++LNP +N
Sbjct: 3 HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWN 62
Query: 554 ESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
E +F V + + D +R+T+++ +G++D+
Sbjct: 63 EEILFRVLPQRH---RILFEVFDENRLTRDDFLGQVDV 97
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 126 bits (317), Expect = 5e-34
Identities = 43/205 (20%), Positives = 66/205 (32%), Gaps = 59/205 (28%)
Query: 298 GKLGQIFFKIKY-QEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK----QKVK 352
F + +E ++ V VI L KD G+SDPYV+V L V+
Sbjct: 3 ATCAVEVFGLLEDEENSRIVRVRVIAGIGLAKKD-ILGASDPYVRVTLYDPMNGVLTSVQ 61
Query: 353 TRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRY 412
T+ ++K+ NP +NEE F L F VF +R
Sbjct: 62 TKTIKKSLNPKWNEEILFRV-----------------------HPQQHRLLFEVFDENRL 98
Query: 413 SRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCR 472
+RDD +G+V L L + +
Sbjct: 99 TRDDFLGQVDVPLY------------------------------PLPTENPRLERPYTFK 128
Query: 473 DIQPRNLRIKSQGRGEILLSLCWQP 497
D KS+ +G + L + + P
Sbjct: 129 DFVLHPRSHKSRVKGYLRLKMTYLP 153
Score = 114 bits (286), Expect = 7e-30
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 487 GEILLSLCWQPAANRF-TIVVLKARNLPKMDVTGLADPYVKVYLL-YKGQRVAKKKTHVK 544
+ L +R + V+ L K D+ G +DPYV+V L + +T
Sbjct: 6 AVEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTI 65
Query: 545 KRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
K++LNP +NE +F V L + D +R+T+++ +G++D+
Sbjct: 66 KKSLNPKWNEEILFRVHPQQH---RLLFEVFDENRLTRDDFLGQVDV 109
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane
associate, lipid binding PROT; 1.96A {Homo sapiens} PDB:
2jqz_A
Length = 132
Score = 106 bits (267), Expect = 2e-27
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 497 PAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESF 556
+ + VL A+NL K D L DP+ K+ + GQ T K TL+P +N+ +
Sbjct: 2 SEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQ---CHSTDTVKNTLDPKWNQHY 58
Query: 557 VFEVPADNLDSVSLELLLLDWDRVTKNEVIGRL 589
V + S+ + + + ++ K + G L
Sbjct: 59 DLYVG----KTDSITISVWNHKKIHKKQGAGFL 87
Score = 92.8 bits (231), Expect = 2e-22
Identities = 14/82 (17%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITP 375
+ +TV+ ++L KD DP+ K+ + Q T ++ T +P +N+ + +
Sbjct: 7 IRLTVLCAKNLAKKD-FFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLY-VGK 64
Query: 376 HQLKGSTLHFVVFSFDRYSRDD 397
++ V++ + +
Sbjct: 65 TD----SITISVWNHKKIHKKQ 82
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy,
cardiomyopathy, membrane fusion, dystrophin, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 105 bits (264), Expect = 5e-27
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 503 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 562
++V A N+PK G DP V V + KKKT LNPV+NE F++
Sbjct: 10 RVIVESASNIPKTK-FGKPDPIVSVIF-----KDEKKKTKKVDNELNPVWNEILEFDLRG 63
Query: 563 DNLD-SVSLELLLLDWDRVTKNEVIGRLDLG 592
LD S SL +++ D++ + +N++IG +
Sbjct: 64 IPLDFSSSLGIIVKDFETIGQNKLIGTATVA 94
Score = 96.3 bits (240), Expect = 8e-24
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGIT 374
+L V V ++ G DP V V +K+K T+ + NP++NE F
Sbjct: 8 MLRVIVESASNIPKTKF--GKPDPIVSVIFKDEKKK--TKKVDNELNPVWNEILEFDLRG 63
Query: 375 PHQLKGSTLHFVVFSFDRYSRDD-IGST 401
S+L +V F+ ++ IG+
Sbjct: 64 IPLDFSSSLGIIVKDFETIGQNKLIGTA 91
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 101 bits (255), Expect = 7e-26
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 503 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 562
+ VLKA +L D +G +DP+ + L G + +TH + LNP +N+ F F +
Sbjct: 16 QVKVLKAADLLAADFSGKSDPFCLLEL---GND--RLQTHTVYKNLNPEWNKVFTFPIK- 69
Query: 563 DNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
++ V LE+ + D D + +G++ +
Sbjct: 70 -DIHDV-LEVTVFDEDGDKPPDFLGKVAI 96
Score = 95.0 bits (237), Expect = 3e-23
Identities = 32/113 (28%), Positives = 44/113 (38%), Gaps = 26/113 (23%)
Query: 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGIT 374
+L V V+K DL D SG SDP+ + L +++T + K NP +N+ FTF
Sbjct: 14 ILQVKVLKAADLLAAD-FSGKSDPFCLLEL--GNDRLQTHTVYKNLNPEWNKVFTF---- 66
Query: 375 PHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS 427
DI L VF D D +G+V L S
Sbjct: 67 -------------------PIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLS 100
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 96.3 bits (240), Expect = 8e-24
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 499 ANRFTIVVLKARNLPK---MDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNES 555
+++FT+VVL+A + K D+ DPYV++++ ++K+T +NPV+NE+
Sbjct: 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFIS--TTPDSRKRTRHFNNDINPVWNET 59
Query: 556 FVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
F F + LE+ L+D + V +E +G
Sbjct: 60 FEFILD--PNQENVLEITLMDANYV-MDETLGTATF 92
Score = 85.5 bits (212), Expect = 5e-20
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Query: 314 NVLVVTVIKCRDLFIKDT--PSGSSDPYVKVHLLPD-KQKVKTRVLRKTRNPIYNEEFTF 370
+ V V++ + + DPYV++ + + +TR NP++NE F F
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
Query: 371 TGITPHQLKGSTLHFVVFSFDRYSRDDIGSTL 402
+ + L + + + +G+
Sbjct: 63 ---ILDPNQENVLEITLMDANYVMDETLGTAT 91
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 93.3 bits (232), Expect = 1e-22
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 503 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 562
+I V+ A+ L D TG +DPYV V + KK+T LNPV+ E+F FE
Sbjct: 20 SITVVCAQGLQAKDKTGSSDPYVTVQV-----GKTKKRTKTIYGNLNPVWEENFHFECH- 73
Query: 563 DNLDSVSLELLLLDWDRVTKNEVIGRLDLGGD 594
S +++ +LD D K+ V R D
Sbjct: 74 --NSSDRIKVRVLDEDDDIKSRVKQRFKRESD 103
Score = 90.3 bits (224), Expect = 2e-21
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 15/114 (13%)
Query: 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGIT 374
+ +TV+ + L KD +GSSDPYV V + K K +T+ + NP++ E F F
Sbjct: 18 KISITVVCAQGLQAKD-KTGSSDPYVTVQV--GKTKKRTKTIYGNLNPVWEENFHFECHN 74
Query: 375 PHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF 428
+ V D + V + DD +G+ +++
Sbjct: 75 SSD----RIKVRVLDEDDDIKS--------RVKQRFKRESDDFLGQTIIEVRTL 116
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 92.4 bits (230), Expect = 2e-22
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 503 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 562
+V++ A+ L D DPYV++ Q +K + P +NE+F+F V
Sbjct: 13 EVVLVSAKGLEDADFLNNMDPYVQLTCR--TQD--QKSNVAEGMGTTPEWNETFIFTVSE 68
Query: 563 DNLDSVSLELLLLDWDRVTKNEVIGR--LDLGGDKSSGTALTHWTDV 607
+ L+ + D D T+++ +G + L G+ +V
Sbjct: 69 GTTE---LKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNV 112
Score = 91.6 bits (228), Expect = 4e-22
Identities = 33/186 (17%), Positives = 53/186 (28%), Gaps = 63/186 (33%)
Query: 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGIT 374
L V ++ + L D + DPYV++ QK P +NE F FT
Sbjct: 11 TLEVVLVSAKGLEDADF-LNNMDPYVQLTCRTQDQK-SNVAEGMGTTPEWNETFIFTV-- 66
Query: 375 PHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGST 434
+ + L +F D + DD VGE L+ GS
Sbjct: 67 ---------------------SEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSI 105
Query: 435 LHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGEILLSLC 494
N+ + +GEI ++L
Sbjct: 106 --------------------------------------PPTAYNVVKDEEYKGEIWVALS 127
Query: 495 WQPAAN 500
++P+
Sbjct: 128 FKPSGP 133
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 91.5 bits (227), Expect = 1e-21
Identities = 31/148 (20%), Positives = 50/148 (33%), Gaps = 31/148 (20%)
Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITP 375
L +TVI + K PYV+V + D Q KT T +P + + T +TP
Sbjct: 38 LQITVISAKLKENKKN-WFGPSPYVEVTV--DGQSKKTEKCNNTNSPKWKQPLTVI-VTP 93
Query: 376 HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS-FETYGST 434
S LHF V+S D ++G + ++
Sbjct: 94 V-----------------------SKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMK 130
Query: 435 LHFVVFSFD---RYSRDDIVGEVFYSLQ 459
L VV + + +G++ L
Sbjct: 131 LEEVVVTLQLGGDKEPTETIGDLSICLD 158
Score = 88.8 bits (220), Expect = 9e-21
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 9/89 (10%)
Query: 503 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 562
I V+ A+ PYV+V + GQ KKT T +P + + V
Sbjct: 39 QITVISAKLKENKKNWFGPSPYVEVTV--DGQ---SKKTEKCNNTNSPKWKQPLTVIVT- 92
Query: 563 DNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
L + + + ++G L
Sbjct: 93 ---PVSKLHFRVWSHQTLKSDVLLGTAAL 118
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 83.1 bits (205), Expect = 6e-19
Identities = 25/119 (21%), Positives = 39/119 (32%), Gaps = 23/119 (19%)
Query: 503 TIVVLKARNLPKMDV----------TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVY 552
+ + +A L L DPY+ V + RV + T K++T P Y
Sbjct: 32 RVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV--DQVRVGQ--TSTKQKTNKPTY 87
Query: 553 NESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRL-----DLGGDKSSGTALTHWTD 606
NE F V D LEL + + + + +L + W D
Sbjct: 88 NEEFCANVT----DGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVD 142
Score = 73.9 bits (181), Expect = 1e-15
Identities = 25/124 (20%), Positives = 37/124 (29%), Gaps = 21/124 (16%)
Query: 315 VLVVTVIKCRDLFIKDT---------PSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYN 365
L V + + L DPY+ V + + +T +KT P YN
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV-DQVRVGQTSTKQKTNKPTYN 88
Query: 366 EEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFD---RYSRDDIVGEVF 422
EEF + G L VF D + F R + E +
Sbjct: 89 EEFCA-----NVTDGGHLELAVFHETPLGYDHF---VANCTLQFQELLRTTGASDTFEGW 140
Query: 423 YSLQ 426
L+
Sbjct: 141 VDLE 144
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 82.2 bits (203), Expect = 9e-19
Identities = 18/99 (18%), Positives = 41/99 (41%), Gaps = 19/99 (19%)
Query: 504 IVVLKARNLPKMDV-----------TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVY 552
I + +A +L T L DPY+ + + R+ +T K++T +P +
Sbjct: 10 IKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSRI--GQTATKQKTNSPAW 65
Query: 553 NESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
++ FV +V + +EL + + ++ + +
Sbjct: 66 HDEFVTDVC----NGRKIELAVFHDAPIGYDDFVANCTI 100
Score = 73.7 bits (181), Expect = 7e-16
Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 19/99 (19%)
Query: 315 VLVVTVIKCRDLFIKD----------TPSGSSDPYVKVHLLPDKQKV-KTRVLRKTRNPI 363
+L + + + L + DPY+ +++ D ++ +T +KT +P
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSRIGQTATKQKTNSPA 64
Query: 364 YNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGST 401
+++EF G + VF DD + +
Sbjct: 65 WHDEFVT-----DVCNGRKIELAVFHDAPIGYDDFVANC 98
Score = 35.6 bits (82), Expect = 0.014
Identities = 9/69 (13%), Positives = 19/69 (27%), Gaps = 6/69 (8%)
Query: 430 TYGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGEI 489
G + VF DD V + G + ++ +G+ +
Sbjct: 74 CNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGS------RHFEDWIDLEPEGKVYV 127
Query: 490 LLSLCWQPA 498
++ L
Sbjct: 128 IIDLSGSSG 136
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 85.0 bits (209), Expect = 3e-17
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 496 QPAANRFTIVVLKARNLPK---MDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVY 552
+++FT+VVL+A + K D+ DPYV++++ ++K+T +NPV+
Sbjct: 14 HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFI--STTPDSRKRTRHFNNDINPVW 71
Query: 553 NESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
NE+F F + + LE+ L+D + V +E +G
Sbjct: 72 NETFEFILDPN--QENVLEITLMDANYV-MDETLGTATF 107
Score = 80.8 bits (198), Expect = 5e-16
Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 310 QEKENVLVVTVIKCRDLFIKDT--PSGSSDPYVKVHLLPDK-QKVKTRVLRKTRNPIYNE 366
+ + V V++ + + DPYV++ + + +TR NP++NE
Sbjct: 14 HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNE 73
Query: 367 EFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTL 402
F F + P+Q + L + + + +G+
Sbjct: 74 TFEFI-LDPNQ--ENVLEITLMDANYVMDETLGTAT 106
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 67.7 bits (165), Expect = 1e-13
Identities = 24/44 (54%), Positives = 35/44 (79%)
Query: 91 ANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE 134
+Q+ ++Y+ +IK L+ KLKEAE RAEFAE++V KL+K +D LE
Sbjct: 68 YSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLE 111
Score = 38.4 bits (89), Expect = 0.002
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 91 ANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE 134
+ + ++ +L L+ AE RAE +E +L++E+ +
Sbjct: 12 LLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVT 55
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 65.4 bits (159), Expect = 7e-12
Identities = 24/44 (54%), Positives = 35/44 (79%)
Query: 91 ANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE 134
+Q+ ++Y+ +IK L+ KLKEAE RAEFAE++V KL+K +D LE
Sbjct: 214 YSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLE 257
Score = 38.5 bits (89), Expect = 0.004
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 96 EEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE 134
E + + K AE R++ E + LQK++ E
Sbjct: 16 ENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATE 54
Score = 37.3 bits (86), Expect = 0.011
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 96 EEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE 134
+ K++++ L + + A RA+ AE K + +LE
Sbjct: 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLE 40
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 59.9 bits (144), Expect = 1e-09
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 318 VTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQ 377
V+ + L+ T + +D Y+KV Q+ +T V+ NP + ++ F +
Sbjct: 398 VSNFRAEHLWGDYTTA--TDAYLKVFF--GGQEFRTGVVWNNNNPRWTDKMDFENVLLST 453
Query: 378 LKGSTLHFVVFSFDRYSRDD-IGST 401
G L V+ D DD +GS
Sbjct: 454 --GGPLRVQVWDADYGWDDDLLGSC 476
Score = 57.6 bits (138), Expect = 7e-09
Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE 559
+ +A +L T D Y+KV+ + + +T V NP + + FE
Sbjct: 394 AHLVVSNFRAEHLWGDYTTA-TDAYLKVFFGGQ-----EFRTGVVWNNNNPRWTDKMDFE 447
Query: 560 VPADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
+ L + + D D ++++G D
Sbjct: 448 NVLLSTGGP-LRVQVWDADYGWDDDLLGSCDR 478
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter
release, RIM, MUNC13 domains, exocytosis, metal-binding;
1.44A {Rattus norvegicus} SCOP: b.7.1.1
Length = 131
Score = 53.8 bits (129), Expect = 6e-09
Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 31/114 (27%)
Query: 314 NVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGI 373
++L V V K + D + YV + + K T +R + P + ++F F
Sbjct: 5 SLLCVGVKKAKF----DGAQEKFNTYVTLKV--QNVKSTTIAVRGS-QPSWEQDFMF--- 54
Query: 374 TPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS 427
+ + L V++ D +VG V+ L++
Sbjct: 55 --------------------EINRLDLGLTVEVWNKGLIW-DTMVGTVWIPLRT 87
Score = 52.7 bits (126), Expect = 1e-08
Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 24/121 (19%)
Query: 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE 559
+ + V KA+ + + YV + + K T + R P + + F+FE
Sbjct: 5 SLLCVGVKKAKFDGAQE---KFNTYVTLKV------QNVKSTTIAVRGSQPSWEQDFMFE 55
Query: 560 VPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWL 619
+ + + L L + W++ L D GT + S EWL
Sbjct: 56 I-----NRLDLGLTVEVWNK----------GLIWDTMVGTVWIPLRTIRQSNEEGPGEWL 100
Query: 620 T 620
T
Sbjct: 101 T 101
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V
hearing, membrane, synapse, transmembrane, membrane
protein; 1.95A {Rattus norvegicus}
Length = 144
Score = 52.7 bits (126), Expect = 2e-08
Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 27/112 (24%)
Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITP 375
L+V + +L G +D KV Q +RVL + +E
Sbjct: 23 LIVHLKTVSEL------RGRADRIAKVTF--RGQSFYSRVLENCEDVADFDE-------- 66
Query: 376 HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS 427
F + S D L +F++ + + ++G LQ
Sbjct: 67 -----------TFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQK 107
Score = 51.2 bits (122), Expect = 6e-08
Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVY-NESFVFE 559
+ + L G AD KV R + V + + +E+F +
Sbjct: 22 ALIVHLKTVSELR-----GRADRIAKVTF-----RGQSFYSRVLENCEDVADFDETFRWP 71
Query: 560 VPADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
V + + LE+ + ++ +V N++IG +
Sbjct: 72 VASSIDRNEVLEIQIFNYSKVFSNKLIGTFRM 103
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 53.4 bits (127), Expect = 2e-07
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 312 KENVLVVTVIKCRDLFIKDTPSGS-SDPYVKVHLL---PDKQKVKTR-VLRKTRNPIYNE 366
+ L V +I + L + S DP V V + D +T + NP ++
Sbjct: 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDM 554
Query: 367 EFTFTGITPHQLKGSTLHFVVFSFDRYSRDDI 398
EF F P + + F+V +D S++D
Sbjct: 555 EFEFEVTVPDL---ALVRFMVEDYDSSSKNDF 583
Score = 47.6 bits (112), Expect = 1e-05
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 475 QPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMD--VTGLADPYVKVYLLYK 532
+P LR + L+ R + ++ + LPK++ + DP V V +
Sbjct: 472 KPAFLRDPNTTFNSRALTQGPWWRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGV 531
Query: 533 GQRVAKKKTHVKKR-TLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIG 587
G+ ++T V NP ++ F FEV +L + ++ D+D +KN+ IG
Sbjct: 532 GRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDL--ALVRFMVEDYDSSSKNDFIG 585
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc
finger, synapto phorbol-ester binding; 1.78A {Rattus
norvegicus} SCOP: b.7.1.1
Length = 167
Score = 48.5 bits (115), Expect = 8e-07
Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 31/117 (26%)
Query: 311 EKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTF 370
++L V V K + D + YV + + + T +R + P + ++F F
Sbjct: 11 GILSLLCVGVKKAKF----DGAQEKFNTYVTLKV--QNVESTTIAVRGS-QPSWEQDFMF 63
Query: 371 TGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS 427
+ + L V++ D +VG V+ L++
Sbjct: 64 -----------------------EINRLDLGLTVEVWNKGLI-WDTMVGTVWIPLRT 96
Score = 47.3 bits (112), Expect = 2e-06
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 24/107 (22%)
Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 542
S G G IL LC + V KA+ + + YV + K Q V + T
Sbjct: 6 SGGGGGILSLLC---------VGVKKAKFDGAQEKF---NTYVTL----KVQNV--ESTT 47
Query: 543 VKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR-VTKNEVIGR 588
+ R P + + F+FE+ + + L L + W++ + + ++G
Sbjct: 48 IAVRGSQPSWEQDFMFEI-----NRLDLGLTVEVWNKGLIWDTMVGT 89
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane,
phosphoprotein, SH3-binding, signaling protein; 3.00A
{Rattus norvegicus}
Length = 483
Score = 48.8 bits (115), Expect = 3e-06
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 10/88 (11%)
Query: 313 ENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKT---RNPIYNEEFT 369
+NVL + +I+ R+L K Y ++ L D +T ++ + E F
Sbjct: 10 DNVLKLWIIEARELPPKK------RYYCELC-LDDMLYARTTSKPRSASGDTVFWGEHFE 62
Query: 370 FTGITPHQLKGSTLHFVVFSFDRYSRDD 397
F + + L+ + +
Sbjct: 63 FNNLPAVRALRLHLYRDSDKKRKKDKAG 90
Score = 45.8 bits (107), Expect = 4e-05
Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 13/109 (11%)
Query: 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVK-KRTLNPVYNESFVF 558
N + +++AR LP Y ++ L A+ + + + E F F
Sbjct: 11 NVLKLWIIEARELPPKK-----RYYCELCL--DDMLYARTTSKPRSASGDTVFWGEHFEF 63
Query: 559 EVPADNLDSVSLELLLLDWD---RVTKNEVIGRLDLGGDKSSGTALTHW 604
L D D + K +G + + +G T
Sbjct: 64 NNLPA--VRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQ 110
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 1e-05
Identities = 81/608 (13%), Positives = 163/608 (26%), Gaps = 195/608 (32%)
Query: 59 LKRPTAVRSPAAAGPNSHYLKKSPSPTYATPVANQRVEEYKRQIKQLAVKLKEAEARAEF 118
L P + Y+++ Y NQ +Y Q +KL++A
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQR-DRLYND---NQVFAKYNVSRLQPYLKLRQA------ 143
Query: 119 AEKTVKKLQKEVDRLEVSGHTVLGLGLAG-LVFAATVCLATCYCRRRTSPLEAKKLALSQ 177
+ +L+ + G+ +G A VC + ++
Sbjct: 144 ----LLELRPA------KNVLIDGVLGSGKTWVALDVC--------LSYKVQ-------- 177
Query: 178 MTLKRPTAVRSPAAAGPNSHYLKKSPSPTYATPVASLVNSPTGSTNSNNGAGSNSHSPIQ 237
K + +L + T + L + +S +
Sbjct: 178 --CKMDFKI----------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 238 PCVALPGTVVITENEKAAP---LVLGVAGPTTAGNGPAANGTDSDDSCALVNKETVDCDG 294
++ + K LVL + N + +
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVL-------------------LNVQ---NAKAWNA-- 261
Query: 295 NAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVH-----LLPDKQ 349
F + + +L+ T R + D S ++ ++ + L PD+
Sbjct: 262 ----------FNLSCK----ILLTT----RFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 350 KVKTRVLRKTRNPIYNEEFTFTGIT----PHQ-LKGSTLHFVVFSFDRYSRDDIGSTLHF 404
K +L K + P + L + + + RD + + ++
Sbjct: 304 K---SLLLK-----------YLDCRPQDLPREVLTTNPRRLSIIA--ESIRDGLATWDNW 347
Query: 405 VVFSFDRYSRDDIVGEVFY-SLQSFETYGSTLHFVVFSFD---------RYSRDDIVGEV 454
+ D+ + I+ E L+ E VF D I +V
Sbjct: 348 KHVNCDKLTT--II-ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 455 FYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGEILLSLCWQPAANRFTI--VVLKARNL 512
+ Y SL + + + I S I L L N + + ++ N+
Sbjct: 405 MVVVNKLHKY--SLVE-KQPKESTISIPS-----IYLELK-VKLENEYALHRSIVDHYNI 455
Query: 513 PK-MDVTGLADP----YVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDS 567
PK D L P Y ++ + H+K ++ +
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGH----------HLKN----------------IEHPER 489
Query: 568 VSL-ELLLLD--W-------DRVTKNEVIGRLDLGGD----KSSGTALTHWTDVCNSPRR 613
++L ++ LD + D N L+ K + D R
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP------YICDNDPKYER 543
Query: 614 QIAEWLTY 621
+ L +
Sbjct: 544 LVNAILDF 551
Score = 40.6 bits (94), Expect = 0.002
Identities = 35/315 (11%), Positives = 80/315 (25%), Gaps = 110/315 (34%)
Query: 322 KCRDL-------FIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGIT 374
+ +D+ F+ + + D ++ + EE ++
Sbjct: 17 QYKDILSVFEDAFVDN---------FDCKDVQDM----------PKSILSKEEIDHIIMS 57
Query: 375 PHQLKGSTLHFVVF------SFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSF 428
+ G+ F ++ + + F++ R + Y
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY----- 112
Query: 429 ETYGSTLHFVVFSFDRY--SRDDIVGEV---FYSLQSFETY---------GHS---LSFC 471
L+ F +Y SR ++ L+ G + L C
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP-AKNVLIDGVLGSGKTWVALDVC 171
Query: 472 RD--IQPRN------LRIKSQGRG----EILLSLCWQPAANRFTIVVLKARNLPKMDVTG 519
+Q + L +K+ E+L L +Q N +T + N+
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN-WTSRSDHSSNIK------ 224
Query: 520 LADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLD--W 577
R+ + +++ + Y LL+L
Sbjct: 225 --------------LRIHSIQAELRRLLKSKPYENC----------------LLVLLNVQ 254
Query: 578 DRVTKNEVIGRLDLG 592
+ + +L
Sbjct: 255 NA----KAWNAFNLS 265
Score = 29.8 bits (66), Expect = 3.1
Identities = 18/135 (13%), Positives = 39/135 (28%), Gaps = 37/135 (27%)
Query: 35 LATCY-CRRRSSPLEAKK---LALSQMTLKRPTAVRSPAAAGPN-----SHYLKKSPSPT 85
L CR + P E LS + ++R G H +
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSII----AESIRD----GLATWDNWKHVNCDKLTTI 358
Query: 86 YATPVANQRVEEYKRQIKQLAV-----------------KLKEAEARAEFAEKTVKK--L 126
+ + EY++ +L+V + +++ K K +
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM-VVVNKLHKYSLV 417
Query: 127 QKEVDRLEVSGHTVL 141
+K+ +S ++
Sbjct: 418 EKQPKESTISIPSIY 432
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 8e-05
Identities = 65/453 (14%), Positives = 108/453 (23%), Gaps = 201/453 (44%)
Query: 24 LAGLVFVATVCLATCYCRRRSSPLEAKKLALSQMTLKRPTAVRSPAAAGPNSHYLKKSPS 83
+ L+ + L+ + L+A+K+ + + + +P+ P+ YL P
Sbjct: 184 VGDLIKFSAETLSELI----RTTLDAEKVFTQGLNILE--WLENPSNT-PDKDYLLSIP- 235
Query: 84 PTYATPVANQRVEEYKRQIKQLA---VKLKEAEAR-AEFAEKTVKKLQKEVDRLEVSGHT 139
+ P+ + QLA V K E + G T
Sbjct: 236 --ISCPLI---------GVIQLAHYVVTAKLLGFTPGELRSY-------------LKGAT 271
Query: 140 VLGLGLAGLVFAATVCLATCYCRRRTSPLEAKKLAL---------SQMTLKR----PTAV 186
GLV A + + S + + A+ P+ +
Sbjct: 272 GHS---QGLVTAVAIAETDSW----ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 187 RSPAAAGPNSHYLKKSPSP-------TYAT------------PVA-----SLVNSPTGST 222
+ PSP T P SLVN
Sbjct: 325 EDSLENN------EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK--- 375
Query: 223 NSNNGAGSNSHSPIQPCVALPGTVVITENEKAAPLVLGVAGPTTAGNGPAANGTDSDDSC 282
+V V+GP P
Sbjct: 376 ----------------------NLV-------------VSGP------PQ---------- 384
Query: 283 ALVNKETVDCDGNAEGKLGQIFFKIKY-QEKENV----LVVTVIKCRDLFIKDTPSGSSD 337
+L A L Q +I + + K L V
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQ--SRIPFSERKLKFSNRFLPVAS----------------- 425
Query: 338 PYVKVH---LLPDKQKVKTRVLRKT--------RNPIYNEEFTFTGITPHQLKGSTLHFV 386
P+ H L+P + +++ + P+Y+ TF G L GS +
Sbjct: 426 PF---HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD---TFDGSDLRVLSGSISERI 479
Query: 387 VFSFDRYSRDDI------------GSTLHFVVF 407
V D I H + F
Sbjct: 480 V--------DCIIRLPVKWETTTQFKATHILDF 504
Score = 33.5 bits (76), Expect = 0.30
Identities = 47/335 (14%), Positives = 91/335 (27%), Gaps = 117/335 (34%)
Query: 335 SSDPYVKVH-------LLPDKQKVKTRVLRK---------TRNPIYNEEFTFTGITPHQL 378
S+ P H L+P L++ T ++E T TP +L
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPT----TPAEL 60
Query: 379 KGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFV 438
G L +V + L+ + F+ + L+ G+ +H +
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN---------CY--LE-----GNDIHAL 104
Query: 439 VFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGEILLSLCWQPA 498
+ D + + +++ Y + + +P + + S L +
Sbjct: 105 AAKLLQ-ENDTTLVKTKELIKN---YITARIMAK--RPFDKKSNS-----ALFRAVGEGN 153
Query: 499 ANRFTIVVLKARNLPKMDVT----GLADPYVK----VYLLYKG------QRVAKKKTHVK 544
A I G D Y + +Y Y + A+ + +
Sbjct: 154 AQLVAI--------------FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 545 KRTL--NPVYNESFVFE--------VP-ADNLDS--VSLELLLLDWDRVTKNEVIGRLDL 591
+ TL V+ + P D L S +S L+ +
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV---------------- 243
Query: 592 GGDKSSGTALTHWTDVCN----SPR--RQIAEWLT 620
L H+ +P R + T
Sbjct: 244 -------IQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Score = 31.9 bits (72), Expect = 0.73
Identities = 33/191 (17%), Positives = 52/191 (27%), Gaps = 74/191 (38%)
Query: 443 DRYSRDDIVGEVF-----YSLQSFETYGHSLSFCRDI---QPRNLRIKSQG-RGEILLSL 493
D Y +V+ + +TYG S+ DI P NL I G +G+ +
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFK---DTYGFSIL---DIVINNPVNLTIHFGGEKGKRI--- 1684
Query: 494 CWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYN 553
N M + D +K ++K +N
Sbjct: 1685 ---------------RENYSAMIFETIVDGKLKTEKIFKE--------------INEHST 1715
Query: 554 ESFVFEVPADNLDS----------VSLELLLLDWDRVTKNEVIGRLDLGGDK-----SSG 598
S+ F L + + K++ G + D S G
Sbjct: 1716 -SYTFRSEKGLLSATQFTQPALTLMEKAAF-----EDLKSK--GLIP--ADATFAGHSLG 1765
Query: 599 --TALTHWTDV 607
AL DV
Sbjct: 1766 EYAALASLADV 1776
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich,
phosphotyrosine binding, TCR, T-cell, diacylglycerol,
phorbol ester, structural genomics; NMR {Homo sapiens}
Length = 138
Score = 36.6 bits (84), Expect = 0.006
Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 8/76 (10%)
Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHL---LPDKQKVKTRVLRKTRNPIYNEEFTFTG 372
L + + + + +PY V + + + + T P ++ F
Sbjct: 12 LRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTF---- 67
Query: 373 ITPHQLKGSTLHFVVF 388
H KG + +V
Sbjct: 68 -DAHINKGRVMQIIVK 82
Score = 33.1 bits (75), Expect = 0.092
Identities = 8/57 (14%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 520 LADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLD 576
+PY V + + + KK T+ P ++ +F + +++++
Sbjct: 31 AVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHI----NKGRVMQIIVKG 83
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK,
molecular replacement, transferase; 1.60A {Homo sapiens}
Length = 81
Score = 32.6 bits (73), Expect = 0.063
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 91 ANQRVEEYKRQIK----QLAVKLKEAEARAEFAEKTVKKLQKEVDRLEVSGHT 139
Q + I+ A +L+EAEAR E V++LQ+ ++ L+ G T
Sbjct: 25 TRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAEGAT 77
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 33.9 bits (77), Expect = 0.065
Identities = 9/45 (20%), Positives = 25/45 (55%)
Query: 90 VANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE 134
+AN+++ + ++Q+++ L+ A K+ ++ K + +LE
Sbjct: 3 LANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLE 47
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 34.9 bits (79), Expect = 0.092
Identities = 16/108 (14%), Positives = 38/108 (35%), Gaps = 7/108 (6%)
Query: 474 IQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKG 533
++P +R + S A I ++ A+ L + YV+V +
Sbjct: 624 LKPEFMRKLDKRFDPFTESTVDGVVAGTIEIKIISAQFLSDKQI----SSYVEVEMYGLP 679
Query: 534 QRVAKKK---THVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD 578
+KK ++ ++P Y+E D + +++ + +
Sbjct: 680 TDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEEN 727
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.6 bits (76), Expect = 0.11
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 91 ANQRVEE-YKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEV 130
A + +EE +RQ +Q+ K K R + ++ ++
Sbjct: 116 AKKDLEEWNQRQSEQVE-KNK-INNRIA-DKAFYQQPDADI 153
Score = 31.3 bits (70), Expect = 0.54
Identities = 9/50 (18%), Positives = 26/50 (52%), Gaps = 11/50 (22%)
Query: 96 EEYKRQIKQL----AVKLKEAEARA-----EFAEKTVKKLQK--EVDRLE 134
EE ++++++L V +E +A E+ ++ ++++K +R+
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 141
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 34.6 bits (78), Expect = 0.11
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 7/79 (8%)
Query: 501 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH---VKKRTLNPVYNESFV 557
+I V+ + L + V YV+V L ++ ++NPV+ E
Sbjct: 679 TLSITVISGQFLSERSV----RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPF 734
Query: 558 FEVPADNLDSVSLELLLLD 576
+ SL + +++
Sbjct: 735 VFEKILMPELASLRVAVME 753
Score = 32.6 bits (73), Expect = 0.47
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 332 PSGSSDPYVKVHLLP------DKQKVKTRVLRKTRNPIYNEE-FTFTGITPHQLKGSTLH 384
S YV+V L + + K + NP++ EE F F I +L ++L
Sbjct: 691 SERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPEL--ASLR 748
Query: 385 FVVFS 389
V
Sbjct: 749 VAVME 753
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine
exchange factor, coiled-coil, endocytosis/exocytosis
complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Length = 154
Score = 33.3 bits (75), Expect = 0.12
Identities = 6/44 (13%), Positives = 18/44 (40%)
Query: 91 ANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE 134
AN V + +++ + + K + + + L ++ L+
Sbjct: 99 ANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLK 142
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein
binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Length = 126
Score = 32.4 bits (73), Expect = 0.12
Identities = 10/73 (13%), Positives = 21/73 (28%), Gaps = 4/73 (5%)
Query: 504 IVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD 563
I P+ V + K KK T+ P + +F +
Sbjct: 10 IAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEG 69
Query: 564 NLDSVSLELLLLD 576
++++L+
Sbjct: 70 R----VIQIVLMR 78
Score = 31.2 bits (70), Expect = 0.35
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 331 TPSGSSDPYVKVHL---LPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVV 387
++ P+ V + L ++ + T P + F H +G + V+
Sbjct: 22 AEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTF-----DAHIYEGRVIQIVL 76
Query: 388 F 388
Sbjct: 77 M 77
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil,
endocytosis/exocytosis complex; 3.00A {Saccharomyces
cerevisiae} SCOP: h.1.33.1
Length = 135
Score = 32.5 bits (73), Expect = 0.14
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 91 ANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEVS 136
+ + + ++K+L + + AE+ KL KEV+ L S
Sbjct: 37 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 82
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil,
endocytosis/exocytosis complex; 2.70A {Saccharomyces
cerevisiae} SCOP: h.1.33.1
Length = 97
Score = 31.7 bits (71), Expect = 0.17
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 93 QRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEVS 136
+ + + ++K+L + + AE+ KL KEV+ L S
Sbjct: 19 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 62
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 33.7 bits (77), Expect = 0.21
Identities = 9/42 (21%), Positives = 25/42 (59%)
Query: 93 QRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE 134
+ +E + + ++ +++E E R++ + KK+Q+++ LE
Sbjct: 920 AKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLE 961
Score = 33.3 bits (76), Expect = 0.28
Identities = 6/42 (14%), Positives = 23/42 (54%)
Query: 93 QRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE 134
Q++ + + Q+++ ++ + A+ +KK++ ++ +E
Sbjct: 955 QQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME 996
Score = 28.6 bits (64), Expect = 6.9
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 7/52 (13%)
Query: 90 VANQRVEEYKRQIKQLAVKLKEAEARAEFAE-------KTVKKLQKEVDRLE 134
A R+E+ Q K++E E+ + K +K+ L
Sbjct: 1099 AALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLS 1150
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 33.5 bits (75), Expect = 0.27
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 7/89 (7%)
Query: 474 IQPRNLRIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLL-YK 532
++P +R + + AN + V+ + L V YV+V +
Sbjct: 699 LKPEFMRRPDKSFDPFTEVIVDGIVANALRVKVISGQFLSDRKV----GIYVEVDMFGLP 754
Query: 533 GQRVAKKKTHVKKR-TLNPVYNES-FVFE 559
K +T + + NPV++E F F
Sbjct: 755 VDTRRKYRTRTSQGNSFNPVWDEEPFDFP 783
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil,
alanine, axial stagger, radius, SIDE-chain packing,
crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Length = 147
Score = 31.6 bits (71), Expect = 0.32
Identities = 2/21 (9%), Positives = 8/21 (38%)
Query: 91 ANQRVEEYKRQIKQLAVKLKE 111
+ + ++ +L + E
Sbjct: 127 LLSKNYHLENEVARLKKLVGE 147
Score = 30.4 bits (68), Expect = 0.86
Identities = 9/43 (20%), Positives = 23/43 (53%)
Query: 92 NQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE 134
N+R++ + ++ + +L A + E AEK + ++ + +E
Sbjct: 2 NRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIE 44
Score = 30.0 bits (67), Expect = 1.0
Identities = 9/43 (20%), Positives = 23/43 (53%)
Query: 93 QRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEV 135
+ ++ + ++ KL+EAE A+ +E+ +K ++ + E
Sbjct: 10 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEE 52
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle
protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Length = 101
Score = 30.6 bits (69), Expect = 0.37
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 96 EEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE 134
E + +Q K AE R++ E + +L+K++ E
Sbjct: 19 ENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTE 57
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase;
transcription hydrolase complex, nucleotide-binding;
2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Length = 109
Score = 30.6 bits (69), Expect = 0.40
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 103 KQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEVSGHTV 140
++K+ E + E L+ EV RL V
Sbjct: 3 HHHHHRMKQLEDKVEELLSKNYHLENEVARLRSPPLLV 40
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 31.0 bits (70), Expect = 0.44
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 91 ANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE 134
A +R ++ + QL K+KE R E E+ +L + +LE
Sbjct: 67 AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLE 110
Score = 30.2 bits (68), Expect = 0.79
Identities = 7/43 (16%), Positives = 20/43 (46%)
Query: 92 NQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE 134
+ + + ++K++ +L++ E +KL+ E L+
Sbjct: 75 IKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELK 117
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein
metal transport, hydrolase; HET: NAG; 2.91A
{Streptococcus pneumoniae} SCOP: h.4.19.1
Length = 125
Score = 31.0 bits (69), Expect = 0.46
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 82 PSPTYATPVANQRVEEYKRQIKQLAVKLKEAEAR---AEFAEKTVKKLQKEVDRLEVS 136
++ E + Q+ +L +LKE + E LQ ++D +
Sbjct: 2 SHMDAEEVAPQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAK 59
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent
oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP:
h.4.8.1 PDB: 1ohh_H* 1hf9_A
Length = 84
Score = 29.6 bits (66), Expect = 0.54
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 98 YKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDR 132
R +QLA K E K +++LQKE++R
Sbjct: 35 RARAKEQLAALKKHKENEISHHAKEIERLQKEIER 69
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 32.0 bits (72), Expect = 0.55
Identities = 17/102 (16%), Positives = 27/102 (26%), Gaps = 11/102 (10%)
Query: 172 KLALSQMTLKRPTAVRSPAAAGPNSHYLKKSPSPTYATPVASLVNSPTGSTNSNNGAGSN 231
L + P+A + AA+ + P T P +P + G +
Sbjct: 13 GLVPRGSHMVIPSASVTSAASDFLAALH---PPVTVPDPAPPPPPAPAAGNPPDTVTGDS 69
Query: 232 SHSPIQPCVALPGTVVITENEKAAPLVLGVAGPTTAGNGPAA 273
I PGT + G PA+
Sbjct: 70 VLQRILRGPTGPGT--------TSLAPAVRYGRQPGPEAPAS 103
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled
coil, alanine, symmetry, axial stagger, BEND,
contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Length = 81
Score = 29.4 bits (66), Expect = 0.71
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 96 EEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE 134
E + +Q K AE R++ E + LQK++ E
Sbjct: 16 ENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTE 54
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.73
Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 99 KRQIKQL--AVKLKEAEARAEFAEK-TVK 124
K+ +K+L ++KL ++ A K T++
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 31.6 bits (72), Expect = 0.89
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 91 ANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEVS 136
+ VE YK+ L K+ + + + + K K L ++++ LE++
Sbjct: 912 EARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEIT 957
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase
family, dimer heterotrimers, oxidoreductase; HET: PCD
FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1
d.145.1.3 PDB: 1sb3_B*
Length = 324
Score = 31.3 bits (71), Expect = 0.99
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 184 TAVRSPAAAGPNSHYLKKSPSPTYATPVAS 213
A+ P ++ Y K P+A
Sbjct: 208 AAIEVPPTGAWSAAYSKVRIRDAVDFPLAG 237
Score = 29.3 bits (66), Expect = 3.5
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 63 TAVRSPAAAGPNSHYLKKSPSPTYATPVA 91
A+ P ++ Y K P+A
Sbjct: 208 AAIEVPPTGAWSAAYSKVRIRDAVDFPLA 236
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450
reductase, diflavin reductase, FAD, FMN-binding,
electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces
cerevisiae} PDB: 2bn4_A* 2bf4_A*
Length = 682
Score = 31.3 bits (71), Expect = 1.1
Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 570 LELLLLDWD---RVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWL 619
L + LD + + + ++ + G A+ H+ ++ RQ+ L
Sbjct: 313 LSIFNLDPETIFDLKPLDPTVKVPFPTPTTIGAAIKHYLEITGPVSRQLFSSL 365
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin,
overlap complex, coiled-coils, contractIle PROT; HET:
DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Length = 175
Score = 30.1 bits (67), Expect = 1.3
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Query: 96 EEYKRQIKQLAVKLKEAEARAEFAEK-------TVKKLQKEVDRLE 134
+ + L++ E AE + T K +K +D LE
Sbjct: 103 NLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTTAKNEKSIDDLE 148
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein,
DUF4398, structural genomics, joint for structural
genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Length = 98
Score = 28.9 bits (64), Expect = 1.5
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 56 QMTLKRPTAVRSPAAAGPNSHYLKKSPSPTYATPVANQRVEEYKR-----QIKQLAVKLK 110
QM L ++ A + K YA E YK+ + +L +L
Sbjct: 8 QMRLTEQALEQAKAVGATDDVAELKLAQDKYAAAQIAMTAESYKKARLLAEQAELDARLA 67
Query: 111 EAEARAEFAEKTVKKLQKEVDRLE 134
E++ + ++ + +L K + RL
Sbjct: 68 ESKVLTQKSKDQLGELDKSLKRLR 91
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH,
adaptor, endocytosis, phosphoprotein; 2.40A
{Saccharomyces cerevisiae}
Length = 287
Score = 30.5 bits (68), Expect = 1.6
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 13/90 (14%)
Query: 39 YCRRRSSPLEAKKLALSQMTLKRPTAVRSPAAAGPNSHYLKKSPSPTYATPVANQRVEEY 98
+ SS L + ++ MT +R S + + SP AT R+ +
Sbjct: 6 HHHHHSSGLVPRGSHMASMTEQRTKYADS----------ILTTKSPYEATETIRIRLSQV 55
Query: 99 KRQIKQLAVKLKEAEARAEFAEKTVKKLQK 128
K K + KE A ++L+K
Sbjct: 56 KLLNKDFYLLFKE---LANLKRNYAQQLRK 82
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima}
Length = 170
Score = 29.6 bits (67), Expect = 1.9
Identities = 8/37 (21%), Positives = 21/37 (56%)
Query: 95 VEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVD 131
+E+ K +K+ ++ + E + E+ ++KL + V+
Sbjct: 6 LEQLKESLKKEGKEIYDVEMKESMREQLLEKLPEIVE 42
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding,
nucleotide-binding, NUCL protein transport, transport,
cytoplasm, GTPase activation; HET: GTP; 2.00A
{Saccharomyces cerevisiae}
Length = 191
Score = 29.8 bits (66), Expect = 2.1
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 73 PNSHYLKKSPSPTYATPVANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKE 129
P S + E + + A++ E +F E+ +K Q+
Sbjct: 132 PEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEE-FEKAQEI 187
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 30.4 bits (69), Expect = 2.2
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 90 VANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE 134
V Q+ ++++ A E ++ +Q ++ LE
Sbjct: 886 VLLQKYNRILKKLENWATTKSVYLGSNE-TGDSITAVQAKLKNLE 929
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 29.3 bits (65), Expect = 2.6
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 11/53 (20%)
Query: 93 QRVEEYKRQIKQLAVKL-----------KEAEARAEFAEKTVKKLQKEVDRLE 134
+ +YK+ ++ +L E EA+ AE+ + LQ + RL+
Sbjct: 17 ELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLK 69
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 30.0 bits (67), Expect = 3.4
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 188 SPAAAGPNSHYLKKSP-----SPTYATPVASLVNSPTGSTNS-NNGAGSNSHSPIQP 238
SP ++ + Y SP SP Y+T A + +SP+ S S + S S+SP P
Sbjct: 1541 SPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSP 1597
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K,
phosphoinositide-3-kinase, influenza virus, NS1; 2.30A
{Bos taurus} PDB: 2v1y_B
Length = 170
Score = 28.6 bits (63), Expect = 3.7
Identities = 7/43 (16%), Positives = 18/43 (41%)
Query: 92 NQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE 134
R+ E +L +L+ + +K + L+ ++ +L
Sbjct: 102 KSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLR 144
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 28.0 bits (63), Expect = 5.5
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 91 ANQRVEEYKRQIKQLAVKLK----EAEARAEFAEKTVKKLQKEVDRLE 134
A + VEE +R +++ + L+ + E + K +KE++RL+
Sbjct: 5 AIEAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLK 52
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain,
nucleoporin, structural genomics, PSI-2, protein
structure initiative; 2.26A {Ashbya gossypii} PDB:
3oan_A
Length = 130
Score = 27.6 bits (61), Expect = 6.1
Identities = 5/38 (13%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 101 QIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEVSGH 138
+++ +K+K+ V Q+ ++ H
Sbjct: 94 KLETFIIKVKQKADGRRLVGA-VADAQQAMEGHH-HHH 129
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 28.7 bits (63), Expect = 6.1
Identities = 4/26 (15%), Positives = 9/26 (34%), Gaps = 2/26 (7%)
Query: 476 PRNLRIKSQGRGEILLSLCWQPAANR 501
NL + + ++ + W P
Sbjct: 7 VTNLSVSVENLCTVIWT--WNPPEGA 30
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 28.1 bits (63), Expect = 7.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 248 ITENEKAAPLVLGVAGPTTAG 268
I + A LVLG+ G + +G
Sbjct: 14 ILAIKTAGRLVLGIDGLSRSG 34
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 28.5 bits (63), Expect = 8.6
Identities = 13/56 (23%), Positives = 22/56 (39%)
Query: 183 PTAVRSPAAAGPNSHYLKKSPSPTYATPVASLVNSPTGSTNSNNGAGSNSHSPIQP 238
A SP + + SP+ + +P S + T+ + S S+SP P
Sbjct: 1527 GEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1582
>4fww_A Macrophage-stimulating protein receptor; beta-propeller,
cysteine-knot, receptor tyrosine kinase, MAC stimulating
protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo
sapiens}
Length = 527
Score = 28.1 bits (61), Expect = 9.6
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 421 VFYSLQSFETYGSTLHFVVFSFDRYSRDDIVG--EVFYSL 458
V Y + SF G V + DR V + L
Sbjct: 1 VKYVVPSFSAGGLVQAMVTYEGDRNESAVFVAIRNRLHVL 40
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.392
Gapped
Lambda K H
0.267 0.0413 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,301,146
Number of extensions: 572624
Number of successful extensions: 1728
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1509
Number of HSP's successfully gapped: 188
Length of query: 622
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 523
Effective length of database: 3,937,614
Effective search space: 2059372122
Effective search space used: 2059372122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)