RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1415
(622 letters)
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 138
Score = 154 bits (390), Expect = 4e-45
Identities = 75/133 (56%), Positives = 104/133 (78%), Gaps = 1/133 (0%)
Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
RGE+L+SLC+Q N T+VVLKAR+LPK DV+GL+DPYVKV L + +R++KKKTHVKK
Sbjct: 1 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKK 60
Query: 546 RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWT 605
T N V+NE FVF++P ++L+ +S+E L+LD +R ++NEVIGRL LG + G+ HW
Sbjct: 61 CTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT-AEGSGGGHWK 119
Query: 606 DVCNSPRRQIAEW 618
++C+ PRRQIA+W
Sbjct: 120 EICDFPRRQIAKW 132
Score = 90.9 bits (225), Expect = 3e-22
Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 6/105 (5%)
Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKTRVLR 357
G++ + YQ N L V V+K R L D SG SDPYVKV+L K+ K KT V +
Sbjct: 2 GELLVSLCYQSTTNTLTVVVLKARHLPKSD-VSGLSDPYVKVNLYHAKKRISKKKTHVKK 60
Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGST 401
T N ++NE F F I L+ ++ F+V +R SR++ IG
Sbjct: 61 CTPNAVFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRL 104
>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 137
Score = 136 bits (343), Expect = 2e-38
Identities = 44/135 (32%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
RG+IL+SL + + +++ +L MD G +DP+VK++L + AK KT +KK
Sbjct: 1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK 60
Query: 546 RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWT 605
+TLNP +NE F +++ +L SL++ + D+D N+ IG L G + G L HW
Sbjct: 61 KTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL-GISAKGERLKHWY 119
Query: 606 DVCNSPRRQIAEWLT 620
+ + ++I W
Sbjct: 120 ECLKNKDKKIERWHQ 134
Score = 91.8 bits (227), Expect = 1e-22
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD---KQKVKTRVLR 357
G+I + Y ++ L+V +I+C L D +G SDP+VK+ L PD K K KT++ +
Sbjct: 2 GKILVSLMYSTQQGGLIVGIIRCVHLAAMDA-NGYSDPFVKLWLKPDMGKKAKHKTQIKK 60
Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHF 404
KT NP +NEEF + I L +L V+ +D +D
Sbjct: 61 KTLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL 106
>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 145
Score = 135 bits (341), Expect = 5e-38
Identities = 54/137 (39%), Positives = 88/137 (64%)
Query: 482 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKT 541
+ GE+ SLC+ P A T+ ++KA NL MD+TG +DPYVK L+ +G+R+ K+KT
Sbjct: 2 EKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKT 61
Query: 542 HVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTAL 601
+KK TLNP YNE+ VF+V +++++V L + ++D+D + NEVIG +G + +
Sbjct: 62 SIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGR 121
Query: 602 THWTDVCNSPRRQIAEW 618
HW ++ +PR+ + W
Sbjct: 122 EHWAEMLANPRKPVEHW 138
Score = 80.6 bits (198), Expect = 1e-18
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 297 EGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ---KVKT 353
+ LG++ F + Y +L VT+IK +L D +G SDPYVK L+ + + K KT
Sbjct: 3 KADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDL-TGFSDPYVKASLISEGRRLKKRKT 61
Query: 354 RVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGST 401
+ + T NP YNE F + P ++ L V +D ++ IG
Sbjct: 62 SIKKNTLNPTYNEALVFD-VAPESVENVGLSIAVVDYDCIGHNEVIGVC 109
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 157
Score = 134 bits (337), Expect = 2e-37
Identities = 67/135 (49%), Positives = 99/135 (73%), Gaps = 1/135 (0%)
Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
G+I SL + P A + T+V+L+A+NL KMDV GL+DPYVK++L+ G+R+ KKKT +KK
Sbjct: 11 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK 70
Query: 546 RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWT 605
TLNP YNESF FEVP + + V + + +LD+D++ KN+ IG++ +G + S+G L HW+
Sbjct: 71 NTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN-STGAELRHWS 129
Query: 606 DVCNSPRRQIAEWLT 620
D+ +PRR IA+W T
Sbjct: 130 DMLANPRRPIAQWHT 144
Score = 85.6 bits (211), Expect = 3e-20
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 6/107 (5%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKV---KTRV 355
KLG I F ++Y L V +++ ++L D G SDPYVK+HL+ + +++ KT +
Sbjct: 10 KLGDICFSLRYVPTAGKLTVVILEAKNLKKMD-VGGLSDPYVKIHLMQNGKRLKKKKTTI 68
Query: 356 LRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGST 401
+ T NP YNE F+F + Q++ + V +D+ ++D IG
Sbjct: 69 KKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKV 114
>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis
protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 111 bits (278), Expect = 1e-29
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
G++ + L + ++ + +L A++LP + +PYVK+Y L K++T K+
Sbjct: 1 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 60
Query: 547 TLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTK--NEVIGRLDLGGDKSSGTALTH 603
TL P +N++F++ V LE+ L D RV + +E +G + + + + H
Sbjct: 61 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 120
Query: 604 W 604
W
Sbjct: 121 W 121
Score = 106 bits (265), Expect = 7e-28
Identities = 27/137 (19%), Positives = 61/137 (44%), Gaps = 21/137 (15%)
Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK---QKVKTRVLR 357
GQ+ K+ + + + L+VT++ +DL ++ +PYVK++ LPD+ K +T+ ++
Sbjct: 1 GQLSIKLWFDKVGHQLIVTILGAKDLPSRE-DGRPRNPYVKIYFLPDRSDKNKRRTKTVK 59
Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDI 417
KT P +N+ F ++ + + + L ++ R + +
Sbjct: 60 KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREE-----------------ESEF 102
Query: 418 VGEVFYSLQSFETYGST 434
+GE+ L++
Sbjct: 103 LGEILIELETALLDDEP 119
>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 143
Score = 106 bits (265), Expect = 1e-27
Identities = 42/125 (33%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 542
+ G++ SL + N+ + +++A LP +D+ G +DPYVKV+LL ++ K +T
Sbjct: 17 EEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETK 74
Query: 543 VKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLG-GDKSSGTAL 601
V ++TLNPV+NE F F+VP L +L + + D+DR +K+++IG + G
Sbjct: 75 VHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVT 134
Query: 602 THWTD 606
W D
Sbjct: 135 EEWRD 139
Score = 96.8 bits (240), Expect = 3e-24
Identities = 53/133 (39%), Positives = 77/133 (57%), Gaps = 9/133 (6%)
Query: 297 EGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQ-KVKTRV 355
E KLG++ + + Y + N L+V +I+ +L D G+SDPYVKV LLPDK+ K +T+V
Sbjct: 17 EEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALD-MGGTSDPYVKVFLLPDKKKKFETKV 75
Query: 356 LRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTLHFVVFSFDRYSR 414
RKT NP++NE+FTF + +L G TL V+ FDR+S+ D IG +
Sbjct: 76 HRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGE----FKVPMNTVDF 130
Query: 415 DDIVGEVFYSLQS 427
+ E + LQS
Sbjct: 131 GHVT-EEWRDLQS 142
>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 132
Score = 104 bits (261), Expect = 3e-27
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 545
RG I + +VV A+NL MD GL+DPYVK+ L+ + +K+KT K
Sbjct: 3 RGRIYIQAHIDR--EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK 60
Query: 546 RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHW 604
+LNP +NE+F F++ + D L + + DWD ++N+ +G L G + + W
Sbjct: 61 CSLNPEWNETFRFQLKESDKDRR-LSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGW 118
Score = 88.2 bits (218), Expect = 2e-21
Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 27/135 (20%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLP---DKQKVKTRV 355
+ G+I+ + VL+V V ++L D P+G SDPYVK+ L+P + K KT+
Sbjct: 2 RRGRIYIQAHIDR--EVLIVVVRDAKNLVPMD-PNGLSDPYVKLKLIPDPKSESKQKTKT 58
Query: 356 LRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRD 415
++ + NP +NE F F D L ++ +D SR+
Sbjct: 59 IKCSLNPEWNETFRFQ---------------------LKESDKDRRLSVEIWDWDLTSRN 97
Query: 416 DIVGEVFYSLQSFET 430
D +G + + + +
Sbjct: 98 DFMGSLSFGISELQK 112
>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 98.6 bits (245), Expect = 6e-25
Identities = 37/133 (27%), Positives = 72/133 (54%), Gaps = 6/133 (4%)
Query: 483 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTG-LADPYVKVYLLYKGQRVAKKKT 541
S G G + SL + F + + +AR LP MD +DPY+K+ +L + + K KT
Sbjct: 5 SSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKH--KVKT 62
Query: 542 HVKKRTLNPVYNESFV-FEVPADNLDSVSLELLLLDWDRVTKNEVIG--RLDLGGDKSSG 598
V ++TL+P ++E+F + +P + ++L +L +DR +++++IG + L G + S
Sbjct: 63 RVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE 122
Query: 599 TALTHWTDVCNSP 611
+ ++ + P
Sbjct: 123 GKMLMNREIISGP 135
Score = 97.9 bits (243), Expect = 1e-24
Identities = 50/107 (46%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 297 EGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD-KQKVKTRV 355
LG +FF ++Y + VV + + R L D S +SDPY+K+ +LP+ K KVKTRV
Sbjct: 5 SSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRV 64
Query: 356 LRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGST 401
LRKT +P ++E FTF GI Q++ LHF + SFDR+SRDD IG
Sbjct: 65 LRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEV 111
>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 130
Score = 86.9 bits (214), Expect = 5e-21
Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 5/124 (4%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
G I +L + +++ + +L+A +LP D G +DPYVK+YLL ++ K +T V ++
Sbjct: 5 GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKK--KFQTKVHRK 62
Query: 547 TLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIG--RLDLGGD-KSSGTALTH 603
TLNP++NE+F F VP L L + D+DR +++++IG LD +
Sbjct: 63 TLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL 122
Query: 604 WTDV 607
W D+
Sbjct: 123 WRDI 126
Score = 79.2 bits (194), Expect = 2e-18
Identities = 48/105 (45%), Positives = 67/105 (63%), Gaps = 4/105 (3%)
Query: 299 KLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLP-DKQKVKTRVLR 357
G+I F ++Y + LVV +++ DL KD +G SDPYVK++LLP K+K +T+V R
Sbjct: 3 PCGRISFALRYLYGSDQLVVRILQALDLPAKD-SNGFSDPYVKIYLLPDRKKKFQTKVHR 61
Query: 358 KTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGST 401
KT NPI+NE F F+ + +L LHF V+ FDR+SR D IG
Sbjct: 62 KTLNPIFNETFQFS-VPLAELAQRKLHFSVYDFDRFSRHDLIGQV 105
>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 142
Score = 83.0 bits (204), Expect = 2e-19
Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 13/130 (10%)
Query: 486 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVA-------- 537
GEI L + + I +L+ARNL D G +DP+VKVYLL +V
Sbjct: 6 TGEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAE 63
Query: 538 -KKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNEVIGRLDLG-GD 594
K++T +++LNP +N++ +++ + + L +LE+ + D+DR + N+ +G + +
Sbjct: 64 YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 123
Query: 595 KSSGTALTHW 604
S W
Sbjct: 124 TSHLDNTPRW 133
Score = 80.7 bits (198), Expect = 1e-18
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 21/140 (15%)
Query: 301 GQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD------------K 348
G+I +I Y L++ +++ R+L +D +G SDP+VKV+LLP +
Sbjct: 7 GEIQLQINYDL--GNLIIHILQARNLVPRD-NNGYSDPFVKVYLLPGRGQVMVVQNASAE 63
Query: 349 QKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDD-IGSTLHFVVF 407
K +T+ ++K+ NP +N+ + I+ QL TL V+ +DR+S +D +G V+
Sbjct: 64 YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGE----VLI 119
Query: 408 SFDRYSRDDIVGEVFYSLQS 427
S D +Y L+
Sbjct: 120 DLSSTSHLDNT-PRWYPLKE 138
>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1
(PLC-D1), C-terminal domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 131
Score = 76.3 bits (187), Expect = 2e-17
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 495 WQPAANRFTIVVLKARNLPK--MDVTGLADPYVKVYLLYKGQRVAKKKTH-VKKRTLNPV 551
W+P R + ++ + LPK + + DP V V + G+ ++T + NP
Sbjct: 1 WRPE--RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPR 58
Query: 552 YNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIG 587
++ F FEV +L V + D+D +KN+ IG
Sbjct: 59 WDMEFEFEVTVPDLALVRFM--VEDYDSSSKNDFIG 92
Score = 60.5 bits (146), Expect = 9e-12
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 8/104 (7%)
Query: 316 LVVTVIKCRDLFIKD-TPSGSSDPYVKVHLLP---DKQKVKTRVLRKT-RNPIYNEEFTF 370
L V +I + L + + DP V V + D +T V+ NP ++ EF F
Sbjct: 6 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65
Query: 371 TGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSR 414
P + + F+V +D S++D S + R
Sbjct: 66 EVTVPDL---ALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYR 106
>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens)
[TaxId: 9606]}
Length = 138
Score = 75.7 bits (185), Expect = 5e-17
Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 5/121 (4%)
Query: 487 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 546
++ L + + L+A + G D YV+ + + +T +KKR
Sbjct: 13 PKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVA-NRTGSVEAQTALKKR 68
Query: 547 TLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLG-GDKSSGTALTHWT 605
L+ + E V + + L + +L L L DR +++ V G L LG S W
Sbjct: 69 QLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWG 128
Query: 606 D 606
+
Sbjct: 129 E 129
Score = 69.2 bits (168), Expect = 1e-14
Identities = 20/138 (14%), Positives = 50/138 (36%), Gaps = 11/138 (7%)
Query: 292 CDGNAEGKLGQIFFKIKYQEKENVLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDK--Q 349
+ + ++ + + Y ++ L VT ++ G D YV+ +
Sbjct: 4 GSSGSWNQAPKLHYCLDYDCQKAELFVTRLEAVTS----NHDGGCDCYVQGSVANRTGSV 59
Query: 350 KVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSF 409
+ +T + ++ + + E + +L +TL + + DR+SR + +
Sbjct: 60 EAQTALKKRQLHTTWEEGLVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGE---LRLGL 115
Query: 410 DRYSRDDIVGEVFYSLQS 427
D S + L++
Sbjct: 116 DGTSVPLGA-AQWGELKT 132
>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 69.0 bits (168), Expect = 9e-15
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 498 AANRFTIVVLKARNLPK---MDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNE 554
++++FT+VVL+A + K D+ DPYV++++ ++K+T +NPV+NE
Sbjct: 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFIS--TTPDSRKRTRHFNNDINPVWNE 58
Query: 555 SFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLG-GDKSSGTALTHW 604
+F F + + + + + L+D + V +E +G G
Sbjct: 59 TFEFILDPNQENVLEIT--LMDANYV-MDETLGTATFTVSSMKVGEKKEVP 106
Score = 60.5 bits (146), Expect = 8e-12
Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 11/117 (9%)
Query: 314 NVLVVTVIKCRDLFIKDT--PSGSSDPYVKVHLLPDK-QKVKTRVLRKTRNPIYNEEFTF 370
+ V V++ + + DPYV++ + + +TR NP++NE F F
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
Query: 371 TGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS 427
+ L + + + +G+ F+ + EV +
Sbjct: 63 ILDPNQ---ENVLEITLMDANYVMDETLGT----ATFTVSSMKVGEKK-EVPFIFNQ 111
>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 136
Score = 68.6 bits (167), Expect = 1e-14
Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 9/104 (8%)
Query: 503 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 562
+V++ A+ L D DPYV++ + +K + P +NE+F+F V
Sbjct: 13 EVVLVSAKGLEDADFLNNMDPYVQLTC----RTQDQKSNVAEGMGTTPEWNETFIFTVSE 68
Query: 563 DNLDSVSLELLLLDWDRVTKNEVIGR--LDLGGDKSSGTALTHW 604
+ + D D T+++ +G + L G+
Sbjct: 69 GTTELK---AKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTA 109
Score = 67.8 bits (165), Expect = 3e-14
Identities = 33/185 (17%), Positives = 51/185 (27%), Gaps = 63/185 (34%)
Query: 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGIT 374
L V ++ + L D + DPYV++ QK P +NE F FT
Sbjct: 11 TLEVVLVSAKGLEDAD-FLNNMDPYVQLTCRTQDQK-SNVAEGMGTTPEWNETFIFTVSE 68
Query: 375 PHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGST 434
L +F D + DD VGE L+ GS
Sbjct: 69 GTT-----------------------ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSI 105
Query: 435 LHFVVFSFDRYSRDDIVGEVFYSLQSFETYGHSLSFCRDIQPRNLRIKSQGRGEILLSLC 494
N+ + +GEI ++L
Sbjct: 106 --------------------------------------PPTAYNVVKDEEYKGEIWVALS 127
Query: 495 WQPAA 499
++P+
Sbjct: 128 FKPSG 132
>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 123
Score = 57.1 bits (137), Expect = 1e-10
Identities = 14/109 (12%), Positives = 33/109 (30%), Gaps = 11/109 (10%)
Query: 321 IKCRDLFIKDTPSGSSDPYVKVHLLPD---KQKVKTRVLRKTRNPIYNEEFTFTGITPHQ 377
+L +S P+ V + + + T P + F H
Sbjct: 9 FNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDA-----HI 63
Query: 378 LKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQ 426
+G + V+ ++ + + +R +++ E + LQ
Sbjct: 64 YEGRVIQIVLMRAAEDPMSEVTVGVSVL---AERCKKNNGKAEFWLDLQ 109
Score = 56.7 bits (136), Expect = 2e-10
Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 5/86 (5%)
Query: 505 VVLKARNL-PKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD 563
+ + L + P+ V + K KK T+ P + +F +
Sbjct: 7 ISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEG 66
Query: 564 NLDSVSLELLLLDWDRVTKNEVIGRL 589
++++L+ +EV +
Sbjct: 67 R----VIQIVLMRAAEDPMSEVTVGV 88
>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane
domain-containing protein 2, MCTP2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 56.7 bits (136), Expect = 2e-10
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 503 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 562
+ VLKA +L D +G +DP+ + + +TH + LNP +N+ F F +
Sbjct: 9 QVKVLKAADLLAADFSGKSDPFCLLE-----LGNDRLQTHTVYKNLNPEWNKVFTFPIKD 63
Query: 563 DNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
+ E+ + D D + +G++ +
Sbjct: 64 IHDVL---EVTVFDEDGDKPPDFLGKVAI 89
Score = 52.5 bits (125), Expect = 5e-09
Identities = 30/116 (25%), Positives = 43/116 (37%), Gaps = 26/116 (22%)
Query: 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGIT 374
+L V V+K DL D SG SDP+ + +++T + K NP +N+ FT
Sbjct: 7 ILQVKVLKAADLLAADF-SGKSDPFCLLE--LGNDRLQTHTVYKNLNPEWNKVFT----- 58
Query: 375 PHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET 430
+ DI L VF D D +G+V L S
Sbjct: 59 ------------------FPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRD 96
>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 55.9 bits (134), Expect = 4e-10
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 9/92 (9%)
Query: 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE 559
++ I V+ A+ PYV+V + KKT T +P + +
Sbjct: 6 SQLQITVISAKLKENKKNWFGPSPYVEVTV-----DGQSKKTEKCNNTNSPKWKQPLTVI 60
Query: 560 VPADNLDSVSLELLLLDWDRVTKNEVIGRLDL 591
V + + + + ++G L
Sbjct: 61 VTPVSKLHFR----VWSHQTLKSDVLLGTAAL 88
Score = 55.1 bits (132), Expect = 8e-10
Identities = 28/148 (18%), Positives = 47/148 (31%), Gaps = 31/148 (20%)
Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITP 375
L +TVI + K PYV+V + D Q KT T +P + + T
Sbjct: 8 LQITVISAKLKENKKN-WFGPSPYVEVTV--DGQSKKTEKCNNTNSPKWKQPLTVIVTPV 64
Query: 376 HQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQS-FETYGST 434
+ LHF V+S D ++G + ++
Sbjct: 65 SK------------------------LHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMK 100
Query: 435 LHFVVFSFD---RYSRDDIVGEVFYSLQ 459
L VV + + +G++ L
Sbjct: 101 LEEVVVTLQLGGDKEPTETIGDLSICLD 128
Score = 37.4 bits (86), Expect = 0.001
Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 9/122 (7%)
Query: 381 STLHFVVFS-FDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFET------YGS 433
S L V S + ++ + +V + D S+ S + + S
Sbjct: 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVS 65
Query: 434 TLHFVVFSFDRYSRDDIVGEVFYSLQS-FETYGHSLSFCR-DIQPRNLRIKSQGRGEILL 491
LHF V+S D ++G + ++ L +Q + ++ G++ +
Sbjct: 66 KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSI 125
Query: 492 SL 493
L
Sbjct: 126 CL 127
>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 122
Score = 55.0 bits (132), Expect = 7e-10
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 503 TIVVLKARNLPKMDVTGLADPYVKVYLL---YKGQRVAKKKTHVKKRTLNPVYNESFVFE 559
+I V+ + L + V YV+V L +R + K ++NPV+ E
Sbjct: 4 SITVISGQFLSERSV----RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVF 59
Query: 560 VPADNLDSVSLELLLLDWDR 579
+ SL + +++
Sbjct: 60 EKILMPELASLRVAVMEEGN 79
Score = 50.7 bits (121), Expect = 2e-08
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 12/83 (14%)
Query: 316 LVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPD------KQKVKTRVLRKTRNPIYNEEFT 369
L +TVI + L S YV+V L + + K + NP++ EE
Sbjct: 3 LSITVISGQFL-----SERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEP- 56
Query: 370 FTGITPHQLKGSTLHFVVFSFDR 392
F + ++L V
Sbjct: 57 FVFEKILMPELASLRVAVMEEGN 79
>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 136
Score = 54.5 bits (130), Expect = 1e-09
Identities = 19/129 (14%), Positives = 43/129 (33%), Gaps = 30/129 (23%)
Query: 503 TIVVLKARNLPKMD-----------VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPV 551
I + +A +L T L DPY+ +T K++T +P
Sbjct: 9 KIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIA----LNVDDSRIGQTATKQKTNSPA 64
Query: 552 YNESFVFEVPADNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSP 611
+++ FV +V EL + + ++ + + + ++ +
Sbjct: 65 WHDEFVTDVCNGRKI----ELAVFHDAPIGYDDFVANCTI-----------QFEELLQNG 109
Query: 612 RRQIAEWLT 620
R +W+
Sbjct: 110 SRHFEDWID 118
Score = 51.0 bits (121), Expect = 2e-08
Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 18/122 (14%)
Query: 315 VLVVTVIKCRDLFIKDT----------PSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIY 364
+L + + + L + DPY+ +++ + +T +KT +P +
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIG-QTATKQKTNSPAW 65
Query: 365 NEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVFYS 424
++EF + + VF DD + + E +
Sbjct: 66 HDEFVTDVCNGRK-----IELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHF--EDWID 118
Query: 425 LQ 426
L+
Sbjct: 119 LE 120
>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 128
Score = 50.1 bits (119), Expect = 3e-08
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 11/87 (12%)
Query: 315 VLVVTVIKCRDLFIKDTPSGSSDPYVKVHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGIT 374
+L V V K + + YV + + K T + P + ++F F
Sbjct: 3 LLCVGVKKAKFD----GAQEKFNTYVTLKV--QNVKSTTIA-VRGSQPSWEQDFMFEINR 55
Query: 375 PHQLKGSTLHFVVFSFDRYSRDDIGST 401
L V++ +G+
Sbjct: 56 LDL----GLTVEVWNKGLIWDTMVGTV 78
Score = 47.0 bits (111), Expect = 5e-07
Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 24/118 (20%)
Query: 503 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 562
+ V KA+ + + YV + + K T + R P + + F+FE+
Sbjct: 5 CVGVKKAKFDGAQE---KFNTYVTL------KVQNVKSTTIAVRGSQPSWEQDFMFEINR 55
Query: 563 DNLDSVSLELLLLDWDRVTKNEVIGRLDLGGDKSSGTALTHWTDVCNSPRRQIAEWLT 620
+L + W++ L D GT + S EWLT
Sbjct: 56 LDLGLT-----VEVWNK----------GLIWDTMVGTVWIPLRTIRQSNEEGPGEWLT 98
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I,
dispensable insert domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 72
Score = 28.2 bits (63), Expect = 0.54
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 94 RVEEYKRQIKQLAVKLKEAEARA-----EFAEKTVKKLQKEVDRLE 134
+++ K Q+ LK A+A A +K V+ +K V RLE
Sbjct: 10 KIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLE 55
>d2rfra1 d.17.4.28 (A:1-153) Uncharacterized protein Saro3722
{Novosphingobium aromaticivorans [TaxId: 48935]}
Length = 153
Score = 29.7 bits (66), Expect = 0.65
Identities = 9/87 (10%), Positives = 22/87 (25%)
Query: 363 IYNEEFTFTGITPHQLKGSTLHFVVFSFDRYSRDDIGSTLHFVVFSFDRYSRDDIVGEVF 422
++ E+ + + KG + + HF+ + D
Sbjct: 42 LWVEDGEYAVVGFATAKGRAAIAALIDGQTHRALMADGCAHFLGPATVTVEGDTATARCH 101
Query: 423 YSLQSFETYGSTLHFVVFSFDRYSRDD 449
+ + H V + + R
Sbjct: 102 SVVFRCVSGTFGSHRVSANRWTFRRTP 128
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 30.3 bits (67), Expect = 0.77
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 93 QRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRL 133
QR EE R +Q A +L+ + + + K+L V L
Sbjct: 3 QRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 43
>d1hc1a1 a.85.1.1 (A:5-135) Hemocyanin, N-terminal domain {Spiny
lobster (Panulirus interruptus) [TaxId: 6735]}
Length = 131
Score = 27.4 bits (61), Expect = 2.3
Identities = 9/81 (11%), Positives = 25/81 (30%), Gaps = 6/81 (7%)
Query: 397 DIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFS-FDRYSRDDIVG--E 453
DI + + Y+ E + + +S F+ R + +
Sbjct: 28 DIAENFNPLG-DTSIYNDHGAAVETLM--KELNDHRLLEQRHWYSLFNTRQRKEALMLFA 84
Query: 454 VFYSLQSFETYGHSLSFCRDI 474
V + + + + ++ R+
Sbjct: 85 VLNQCKEWYCFRSNAAYFRER 105
>d1e7ua2 b.7.1.1 (A:351-524) Phoshoinositide 3-kinase (PI3K) {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 174
Score = 28.0 bits (62), Expect = 2.6
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 500 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE 559
+F + + P + T +V+ + Y Q + +++T K T ++N F
Sbjct: 9 RKFRVKIRGIDI-PVLPRTADLTVFVEANIQYGQQVLCQRRTSPKPFTEEVLWNVWLEFS 67
Query: 560 VPADNL 565
+ +L
Sbjct: 68 IKIKDL 73
>d1rp3b_ a.137.11.1 (B:) Anti-sigma factor FlgM {Aquifex aeolicus
[TaxId: 63363]}
Length = 87
Score = 26.5 bits (58), Expect = 3.1
Identities = 9/45 (20%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 88 TPVANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDR 132
++E K + ++A +L + + + EK VK+L++++++
Sbjct: 25 KESGTNKIE-DKVTLSKIAQELSKNDVEEKDLEKKVKELKEKIEK 68
>d1v6ia_ b.29.1.1 (A:) Legume lectin {Peanut (Arachis hypogaea)
[TaxId: 3818]}
Length = 232
Score = 27.4 bits (60), Expect = 4.9
Identities = 18/113 (15%), Positives = 30/113 (26%), Gaps = 6/113 (5%)
Query: 342 VHLLPDKQKVKTRVLRKTRNPIYNEEFTFTGITPHQLKGSTLH-----FVVFSFDRYSRD 396
++ D + ++ T N P ++ S FSF+
Sbjct: 18 INFQGDVTVLSNGNIQLTNLNKVNSVGRVLYAMPVRIWSSATGNVASFLTSFSFEMKDIK 77
Query: 397 DIGSTLHFVVFSFDRYSRDDIVGEVFYSLQSFETYGSTLHFVVFSFDRYSRDD 449
D ++F G + HFV FD YS +
Sbjct: 78 DYDPA-DGIIFFIAPEDTQIPAGSIGGGTLGVSDTKGAGHFVGVEFDTYSNSE 129
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 237
Score = 27.0 bits (59), Expect = 6.5
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 91 ANQRVEEY--KRQIKQLAVKLKEAEARAEFAEKTVKKLQKEV 130
A Q+V E + +L KE E + + + V ++ +
Sbjct: 3 ATQKVSEKVGGAEGTKLDDDFKEMERKVDVTSRAVMEIMTKT 44
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial
{Cow (Bos taurus) [TaxId: 9913]}
Length = 120
Score = 25.5 bits (56), Expect = 9.0
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 18/67 (26%)
Query: 86 YATPVANQR-VEEYKRQIKQL-----------AVKLKEAEARAEFAE------KTVKKLQ 127
Y VA V++++++ L V +E E AE +++ +
Sbjct: 53 YKANVAKAGLVDDFEKKFNALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYE 112
Query: 128 KEVDRLE 134
KE++++
Sbjct: 113 KELEKMR 119
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.392
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,240,199
Number of extensions: 105052
Number of successful extensions: 401
Number of sequences better than 10.0: 1
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 61
Length of query: 622
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 531
Effective length of database: 1,158,166
Effective search space: 614986146
Effective search space used: 614986146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.7 bits)