BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14159
         (264 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain
          Length = 323

 Score =  142 bits (358), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 63/132 (47%), Positives = 96/132 (72%), Gaps = 8/132 (6%)

Query: 95  VQTIYIYKP----TGISINTEDYACLDKEQFINDVIIDFYLGFLLQEMATPHIREKTHIF 150
           VQ + +Y P     G+ +  ED  CL++ +F+NDVIIDFYL +L+ E A+  + E++HIF
Sbjct: 18  VQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIF 77

Query: 151 STFFYKRLTQKPTRKISGSIEGDPHISAAKKRHSRVQSWTKNINVFEKDFIVVPINSNAH 210
           S+FFYK LT    RK +   E +P++S A++RH RV++WT++IN+F KD+I VP+N ++H
Sbjct: 78  SSFFYKCLT----RKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSH 133

Query: 211 WFLAIICFPGLK 222
           W+LA+ICFP L+
Sbjct: 134 WYLAVICFPWLE 145


>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt
 pdb|2XPH|B Chain B, Crystal Structure Of Human Senp1 With The Bound Cobalt
          Length = 238

 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 31/162 (19%)

Query: 106 ISINTEDYACLDKEQFINDVIIDFYLGFLLQ---EMATPHIREKTHIFSTFFYKRLTQKP 162
           ++I  +D   L+   ++ND II+FY+  L++   E   P +    H F+TFF+ +L    
Sbjct: 44  LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSV----HAFNTFFFTKL---- 95

Query: 163 TRKISGSIEGDPHISAAKKRHSRVQSWTKNINVFEKDFIVVPINSNAHWFLAIICF--PG 220
             K +G              +  V+ WTK ++VF  D ++VPI+   HW LA++ F    
Sbjct: 96  --KTAG--------------YQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKN 139

Query: 221 LKGCETPEGRAVEECQRFRSLRKRERI--KLDEMQKTGRTLY 260
           +   ++  G   E C+      K+E I  K  E    G  L+
Sbjct: 140 ITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLF 181


>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap
 pdb|2IY1|A Chain A, Senp1 (Mutant) Full Length Sumo1
 pdb|2IY1|C Chain C, Senp1 (Mutant) Full Length Sumo1
          Length = 226

 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 31/162 (19%)

Query: 106 ISINTEDYACLDKEQFINDVIIDFYLGFLLQ---EMATPHIREKTHIFSTFFYKRLTQKP 162
           ++I  +D   L+   ++ND II+FY+  L++   E   P +    H F+TFF+ +L    
Sbjct: 32  LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSV----HAFNTFFFTKL---- 83

Query: 163 TRKISGSIEGDPHISAAKKRHSRVQSWTKNINVFEKDFIVVPINSNAHWFLAIICF--PG 220
             K +G              +  V+ WTK ++VF  D ++VPI+   HW LA++ F    
Sbjct: 84  --KTAG--------------YQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKN 127

Query: 221 LKGCETPEGRAVEECQRFRSLRKRERI--KLDEMQKTGRTLY 260
           +   ++  G   E C+      K+E I  K  E    G  L+
Sbjct: 128 ITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLF 169


>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
           With Sumo-1
 pdb|2G4D|C Chain C, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
           With Sumo-1
          Length = 205

 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 31/162 (19%)

Query: 106 ISINTEDYACLDKEQFINDVIIDFYLGFLLQ---EMATPHIREKTHIFSTFFYKRLTQKP 162
           ++I  +D   L+   ++ND II+FY+  L++   E   P +    H F+TFF+ +L    
Sbjct: 11  LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSV----HAFNTFFFTKL---- 62

Query: 163 TRKISGSIEGDPHISAAKKRHSRVQSWTKNINVFEKDFIVVPINSNAHWFLAIICF--PG 220
             K +G              +  V+ WTK ++VF  D ++VPI+   HW LA++ F    
Sbjct: 63  --KTAG--------------YQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKN 106

Query: 221 LKGCETPEGRAVEECQRFRSLRKRERI--KLDEMQKTGRTLY 260
           +   ++  G   E C+      K+E I  K  E    G  L+
Sbjct: 107 ITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLF 148


>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1
           Structure
 pdb|2XRE|B Chain B, Detection Of Cobalt In Previously Unassigned Human Senp1
           Structure
          Length = 230

 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 31/162 (19%)

Query: 106 ISINTEDYACLDKEQFINDVIIDFYLGFLLQ---EMATPHIREKTHIFSTFFYKRLTQKP 162
           ++I  +D   L+   ++ND II+FY+  L++   E   P +    H F+TFF+ +L    
Sbjct: 36  LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSV----HAFNTFFFTKL---- 87

Query: 163 TRKISGSIEGDPHISAAKKRHSRVQSWTKNINVFEKDFIVVPINSNAHWFLAIICF--PG 220
             K +G              +  V+ WTK ++VF  D ++VPI+   HW LA++ F    
Sbjct: 88  --KTAG--------------YQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKN 131

Query: 221 LKGCETPEGRAVEECQRFRSLRKRERI--KLDEMQKTGRTLY 260
           +   ++  G   E C+      K+E I  K  E    G  L+
Sbjct: 132 ITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLF 173


>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
           Structural Basis For Discrimination Between Sumo
           Paralogues During Processing
 pdb|2CKG|B Chain B, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
           Structural Basis For Discrimination Between Sumo
           Paralogues During Processing
 pdb|2CKH|A Chain A, Senp1-sumo2 Complex
          Length = 225

 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 31/162 (19%)

Query: 106 ISINTEDYACLDKEQFINDVIIDFYLGFLLQ---EMATPHIREKTHIFSTFFYKRLTQKP 162
           ++I  +D   L+   ++ND II+FY+  L++   E   P +    H F+TFF+ +L    
Sbjct: 32  LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSV----HAFNTFFFTKL---- 83

Query: 163 TRKISGSIEGDPHISAAKKRHSRVQSWTKNINVFEKDFIVVPINSNAHWFLAIICF--PG 220
             K +G              +  V+ WTK ++VF  D ++VPI+   HW LA++ F    
Sbjct: 84  --KTAG--------------YQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKN 127

Query: 221 LKGCETPEGRAVEECQRFRSLRKRERI--KLDEMQKTGRTLY 260
           +   ++  G   E C+      K+E I  K  E    G  L+
Sbjct: 128 ITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLF 169


>pdb|2IYC|A Chain A, Senp1 Native Structure
 pdb|2IYC|B Chain B, Senp1 Native Structure
 pdb|2IYD|A Chain A, Senp1 Covalent Complex With Sumo-2
          Length = 226

 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 31/162 (19%)

Query: 106 ISINTEDYACLDKEQFINDVIIDFYLGFLLQ---EMATPHIREKTHIFSTFFYKRLTQKP 162
           ++I  +D   L+   ++ND II+FY+  L++   E   P +    H F+TFF+ +L    
Sbjct: 32  LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSV----HAFNTFFFTKL---- 83

Query: 163 TRKISGSIEGDPHISAAKKRHSRVQSWTKNINVFEKDFIVVPINSNAHWFLAIICF--PG 220
             K +G              +  V+ WTK ++VF  D ++VPI+   HW LA++ F    
Sbjct: 84  --KTAG--------------YQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKN 127

Query: 221 LKGCETPEGRAVEECQRFRSLRKRERI--KLDEMQKTGRTLY 260
           +   ++  G   E C+      K+E I  K  E    G  L+
Sbjct: 128 ITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLF 169


>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2
 pdb|2IO1|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-3
 pdb|2IO1|C Chain C, Crystal Structure Of Human Senp2 In Complex With Presumo-3
 pdb|2IO1|E Chain E, Crystal Structure Of Human Senp2 In Complex With Presumo-3
 pdb|2IO2|A Chain A, Crystal Structure Of Human Senp2 In Complex With
           Rangap1-sumo-1
 pdb|2IO3|A Chain A, Crystal Structure Of Human Senp2 In Complex With Rangap1-
           Sumo-2
          Length = 232

 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 27/114 (23%)

Query: 106 ISINTEDYACLDKEQFINDVIIDFYLGFLLQ---EMATPHIREKTHIFSTFFYKRLTQKP 162
           + I   D   L    ++ND +I+FY+  L++   +   P +    H+FSTFFY +L    
Sbjct: 38  LRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPAL----HVFSTFFYPKLK--- 90

Query: 163 TRKISGSIEGDPHISAAKKRHSRVQSWTKNINVFEKDFIVVPINSNAHWFLAII 216
               SG  +              V+ WTK +N+FE++ I+VPI+   HW L +I
Sbjct: 91  ----SGGYQA-------------VKRWTKGVNLFEQEIILVPIHRKVHWSLVVI 127


>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1
 pdb|1TH0|A Chain A, Structure Of Human Senp2
 pdb|1TH0|B Chain B, Structure Of Human Senp2
          Length = 226

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 27/114 (23%)

Query: 106 ISINTEDYACLDKEQFINDVIIDFYLGFLLQ---EMATPHIREKTHIFSTFFYKRLTQKP 162
           + I   D   L    ++ND +I+FY+  L++   +   P +    H+FSTFFY +L    
Sbjct: 32  LRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPAL----HVFSTFFYPKLK--- 84

Query: 163 TRKISGSIEGDPHISAAKKRHSRVQSWTKNINVFEKDFIVVPINSNAHWFLAII 216
               SG  +              V+ WTK +N+FE++ I+VPI+   HW L +I
Sbjct: 85  ----SGGYQA-------------VKRWTKGVNLFEQEIILVPIHRKVHWSLVVI 121


>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
           A Sulfenic Acid
 pdb|2HL8|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
           A Sulfinic Acid
 pdb|2HL9|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
           A Sulfonic Acid
          Length = 221

 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 29/114 (25%)

Query: 106 ISINTEDYACLDKEQFINDVIIDFYLGFLLQEMATPHIREKTHIFSTFFYKRLTQKPTRK 165
           I I   D+  L   +++ND II+F++ ++  E +TP+    T  F++FFY  L+++    
Sbjct: 33  IEITVRDFKTLAPRRWLNDTIIEFFMKYI--EKSTPN----TVAFNSFFYTNLSERG--- 83

Query: 166 ISGSIEGDPHISAAKKRHSRVQSWT--KNINVFEKDFIVVPINSN-AHWFLAII 216
                            +  V+ W   K   + + D I  PIN N +HW L II
Sbjct: 84  -----------------YQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGII 120


>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
           Complex With Smt3, The Yeast Ortholog Of Sumo
          Length = 221

 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 29/114 (25%)

Query: 106 ISINTEDYACLDKEQFINDVIIDFYLGFLLQEMATPHIREKTHIFSTFFYKRLTQKPTRK 165
           I I   D+  L   +++ND II+F++ ++  E +TP+    T  F++FFY  L+++    
Sbjct: 33  IEITVRDFKTLAPRRWLNDTIIEFFMKYI--EKSTPN----TVAFNSFFYTNLSERG--- 83

Query: 166 ISGSIEGDPHISAAKKRHSRVQSWT--KNINVFEKDFIVVPINSN-AHWFLAII 216
                            +  V+ W   K   + + D I  PIN N +HW L II
Sbjct: 84  -----------------YQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGII 120


>pdb|3O98|A Chain A, Glutathionylspermidine SynthetaseAMIDASE C59A COMPLEX WITH
           ADP AND Gsp
 pdb|3O98|B Chain B, Glutathionylspermidine SynthetaseAMIDASE C59A COMPLEX WITH
           ADP AND Gsp
          Length = 619

 Score = 32.7 bits (73), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 94  PVQTIYIYKPTGISINTEDYACLDKEQFINDVIIDFYL 131
           P  T+  Y P G++I + DY+ LD +++ +D +   Y+
Sbjct: 11  PFGTLLGYAPGGVAIYSSDYSSLDPQEYEDDAVFRSYI 48


>pdb|2IO7|A Chain A, E. Coli Bifunctional Glutathionylspermidine
           SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND AMPPNP
 pdb|2IO7|B Chain B, E. Coli Bifunctional Glutathionylspermidine
           SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND AMPPNP
 pdb|2IO8|A Chain A, E. Coli Bifunctional Glutathionylspermidine
           SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP
 pdb|2IO8|B Chain B, E. Coli Bifunctional Glutathionylspermidine
           SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP
 pdb|2IO9|A Chain A, E. Coli Bifunctional Glutathionylspermidine
           SynthetaseAMIDASE INCOMPLEX WITH MG2+ ,GSH AND ADP
 pdb|2IO9|B Chain B, E. Coli Bifunctional Glutathionylspermidine
           SynthetaseAMIDASE INCOMPLEX WITH MG2+ ,GSH AND ADP
 pdb|2IOA|A Chain A, E. Coli Bifunctional Glutathionylspermidine
           SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP AND
           Phosphinate Inhibitor
 pdb|2IOA|B Chain B, E. Coli Bifunctional Glutathionylspermidine
           SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP AND
           Phosphinate Inhibitor
 pdb|2IOB|A Chain A, E. Coli Bifunctional Glutathionylspermidine
           SynthetaseAMIDASE APO PROTEIN
 pdb|2IOB|B Chain B, E. Coli Bifunctional Glutathionylspermidine
           SynthetaseAMIDASE APO PROTEIN
          Length = 619

 Score = 32.7 bits (73), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 94  PVQTIYIYKPTGISINTEDYACLDKEQFINDVIIDFYL 131
           P  T+  Y P G++I + DY+ LD +++ +D +   Y+
Sbjct: 11  PFGTLLGYAPGGVAIYSSDYSSLDPQEYEDDAVFRSYI 48


>pdb|3A2Y|A Chain A, E. Coli Gsp Amidase C59a Complexed With Gsp
          Length = 197

 Score = 32.3 bits (72), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 94  PVQTIYIYKPTGISINTEDYACLDKEQFINDVIIDFYL 131
           P  T+  Y P G++I + DY+ LD +++ +D +   Y+
Sbjct: 11  PFGTLLGYAPGGVAIYSSDYSSLDPQEYEDDAVFRSYI 48


>pdb|3A2Z|A Chain A, E. Coli Gsp Amidase Cys59 Sulfenic Acid
 pdb|3A30|A Chain A, E. Coli Gsp Amidase C59 Acetate Modification
          Length = 197

 Score = 32.3 bits (72), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 94  PVQTIYIYKPTGISINTEDYACLDKEQFINDVIIDFYL 131
           P  T+  Y P G++I + DY+ LD +++ +D +   Y+
Sbjct: 11  PFGTLLGYAPGGVAIYSSDYSSLDPQEYEDDAVFRSYI 48


>pdb|3MDU|A Chain A, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
           From Pseudomonas Aeruginosa Complexed With
           N-Guanidino-L-Glutamate
 pdb|3MDW|A Chain A, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
           From Pseudomonas Aeruginosa Complexed With
           N-Formimino-L-Aspartate
 pdb|3MDW|B Chain B, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
           From Pseudomonas Aeruginosa Complexed With
           N-Formimino-L-Aspartate
 pdb|3MDW|C Chain C, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
           From Pseudomonas Aeruginosa Complexed With
           N-Formimino-L-Aspartate
 pdb|3MDW|D Chain D, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
           From Pseudomonas Aeruginosa Complexed With
           N-Formimino-L-Aspartate
          Length = 453

 Score = 28.9 bits (63), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 15/66 (22%)

Query: 199 DFIV----VPINSNAHWFLAIICFPGLKGCETPEGRAVEECQRFRSLRKRERIKLDEMQK 254
           DF+     + I S++H  L+++           E R +E  QR R  RKR R+  D+   
Sbjct: 307 DFLAQGGRLGIGSDSHVSLSVV----------EELRWLEYGQRLRD-RKRNRLYRDDQPM 355

Query: 255 TGRTLY 260
            GRTLY
Sbjct: 356 IGRTLY 361


>pdb|4HZN|A Chain A, The Structure Of The Bifunctional
           Acetyltransferase/decarboxylase Lnmk From The Leinamycin
           Biosynthetic Pathway Revealing Novel Activity For A
           Double Hot Dog Fold
          Length = 333

 Score = 27.7 bits (60), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 9/51 (17%)

Query: 49  EEPQDGPCLEE-------LSIKEANNILVKSSPPELRNVNSAAPPIPAPVS 92
           E P+DG    E        S   +N  LVKSSPP  R  N   P +PA  S
Sbjct: 140 ERPRDGSLYVENFNRWVTRSAPGSNEDLVKSSPPGFR--NDGLPQLPAAYS 188


>pdb|4HZP|A Chain A, The Structure Of The Bifunctional
           Acetyltransferase/decarboxylase Lnmk From The Leinamycin
           Biosynthetic Pathway Revealing Novel Activity For A
           Double Hot Dog Fold
          Length = 318

 Score = 27.7 bits (60), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 9/51 (17%)

Query: 49  EEPQDGPCLEE-------LSIKEANNILVKSSPPELRNVNSAAPPIPAPVS 92
           E P+DG    E        S   +N  LVKSSPP  R  N   P +PA  S
Sbjct: 125 ERPRDGSLYVENFNRWVTRSAPGSNEDLVKSSPPGFR--NDGLPQLPAAYS 173


>pdb|4HZO|A Chain A, The Structure Of The Bifunctional
           Acetyltransferase/decarboxylase Lnmk From The Leinamycin
           Biosynthetic Pathway Revealing Novel Activity For A
           Double Hot Dog Fold
          Length = 318

 Score = 27.7 bits (60), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 9/51 (17%)

Query: 49  EEPQDGPCLEE-------LSIKEANNILVKSSPPELRNVNSAAPPIPAPVS 92
           E P+DG    E        S   +N  LVKSSPP  R  N   P +PA  S
Sbjct: 125 ERPRDGSLYVENFNRWVTRSAPGSNEDLVKSSPPGFR--NDGLPQLPAAYS 173


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,057,078
Number of Sequences: 62578
Number of extensions: 334961
Number of successful extensions: 685
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 24
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)