Query psy14159
Match_columns 264
No_of_seqs 155 out of 704
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 20:58:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eay_A Sentrin-specific protea 100.0 5.2E-39 1.8E-43 299.5 14.3 166 91-260 14-252 (323)
2 2xph_A Sentrin-specific protea 100.0 4.7E-31 1.6E-35 235.1 14.0 142 98-261 37-182 (238)
3 1th0_A SMT3-, sentrin-specific 100.0 1.3E-30 4.3E-35 230.5 14.4 143 96-261 24-170 (226)
4 1euv_A ULP1 protease; SUMO hyd 99.9 1.9E-27 6.5E-32 209.6 14.5 116 104-245 31-155 (221)
5 2bkr_A Sentrin-specific protea 99.9 3E-27 1E-31 206.6 12.4 124 96-244 3-138 (212)
6 2oix_A Xanthomonas outer prote 99.8 3.5E-21 1.2E-25 166.0 10.5 95 118-231 1-101 (186)
7 3eop_A Thymocyte nuclear prote 24.8 31 0.0011 29.1 1.9 35 3-37 88-129 (176)
8 1n6j_G Calcineurin-binding pro 17.9 1.1E+02 0.0038 18.7 2.8 17 27-43 8-24 (35)
9 2eve_A Hypothetical protein ps 16.0 83 0.0029 26.0 2.6 60 3-69 77-146 (157)
10 3bl9_A Scavenger mRNA-decappin 15.1 2.9E+02 0.0099 25.0 6.2 47 199-245 163-215 (301)
No 1
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=100.00 E-value=5.2e-39 Score=299.50 Aligned_cols=166 Identities=40% Similarity=0.780 Sum_probs=132.0
Q ss_pred CCCCcceEEeeCCC----CeeeehhhhhccCCCCCccHHHHHHHHHHHHHhhcCCCCCCceEEechHHHHhhccCCcccc
Q psy14159 91 VSQPVQTIYIYKPT----GISINTEDYACLDKEQFINDVIIDFYLGFLLQEMATPHIREKTHIFSTFFYKRLTQKPTRKI 166 (264)
Q Consensus 91 ~~~~~~~il~yp~~----gi~It~~Dl~~L~~~~wLND~IInFYL~~L~~~~~~~~~~~~v~iFsSFFy~kL~~~~~~~~ 166 (264)
+.|+++++++|||+ |++|+++|+.||.+++||||+||||||+||..+.......+++|+||||||++|.+.+..
T Consensus 14 ~~~~~~~~~~yP~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~~~~~~r~h~FnSFFy~kL~~~~~~-- 91 (323)
T 3eay_A 14 HTGLVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFFYKCLTRKENN-- 91 (323)
T ss_dssp ---CCCEEEEESCTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSCHHHHHTEEECCTHHHHHHSCC-----
T ss_pred cCCCcceeEEeCCCCCCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhccccccCcEEEEchHHHHHHHhcccc--
Confidence 57889999999985 799999999999999999999999999999866544344679999999999999876431
Q ss_pred CCCCCCCccchhhhhhccceecccccCCCCccCeEEEeecCCCceeEEEEEcCCc-------------------------
Q psy14159 167 SGSIEGDPHISAAKKRHSRVQSWTKNINVFEKDFIVVPINSNAHWFLAIICFPGL------------------------- 221 (264)
Q Consensus 167 ~~~~e~d~~l~~~~~~~~~V~rWtkkvdIF~kd~I~IPIN~~~HW~LaVI~~p~l------------------------- 221 (264)
..+.+++++.++++|.+|+||||++|||++|+||||||++.||+|||||+|++
T Consensus 92 --~~~~~~~~s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
T 3eay_A 92 --LTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDN 169 (323)
T ss_dssp -------CCSCHHHHHHTTSGGGGTTCCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC-------------------
T ss_pred --cccccccchhHHHHHHHHHHHHhhcccccCCEEEEecCCCCceEEEEEecCCcccccccccccccccccccccccccc
Confidence 12335566777889999999999999999999999999999999999999963
Q ss_pred ---------------------------------------ccccCCCC-ChHHHHHHHHHHHHHH-h-h--hcCcccCCCC
Q psy14159 222 ---------------------------------------KGCETPEG-RAVEECQRFRSLRKRE-R-I--KLDEMQKTGR 257 (264)
Q Consensus 222 ---------------------------------------~~~dS~~~-~~~~~~~~~~~~~~~~-~-~--k~~~~~~~~w 257 (264)
.++||+++ .....++.+++|++.| . | +..+|+..+|
T Consensus 170 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~~k~~~~~~f~~~~~ 249 (323)
T 3eay_A 170 KTIDNDLRTTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTHRQFSKTNM 249 (323)
T ss_dssp ------------------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHHHHHSSCCCCCTTTS
T ss_pred cccccccccccccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHhhcCCCcCCCHhHc
Confidence 56799975 4566677777788777 2 3 3456777788
Q ss_pred eEE
Q psy14159 258 TLY 260 (264)
Q Consensus 258 ~~~ 260 (264)
..+
T Consensus 250 ~~~ 252 (323)
T 3eay_A 250 VDL 252 (323)
T ss_dssp CEE
T ss_pred eec
Confidence 654
No 2
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=99.97 E-value=4.7e-31 Score=235.08 Aligned_cols=142 Identities=28% Similarity=0.548 Sum_probs=122.4
Q ss_pred EEeeCCCCeeeehhhhhccCCCCCccHHHHHHHHHHHHHhhcCCCCCCceEEechHHHHhhccCCccccCCCCCCCccch
Q psy14159 98 IYIYKPTGISINTEDYACLDKEQFINDVIIDFYLGFLLQEMATPHIREKTHIFSTFFYKRLTQKPTRKISGSIEGDPHIS 177 (264)
Q Consensus 98 il~yp~~gi~It~~Dl~~L~~~~wLND~IInFYL~~L~~~~~~~~~~~~v~iFsSFFy~kL~~~~~~~~~~~~e~d~~l~ 177 (264)
++.+. .++.|+++|+.||.+++||||+|||||++||.++... ...+++|+||||||++|...
T Consensus 37 vl~~~-~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~-~~~~~~~~f~sff~~~l~~~---------------- 98 (238)
T 2xph_A 37 VLSEA-FRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE-KGLPSVHAFNTFFFTKLKTA---------------- 98 (238)
T ss_dssp CCEEE-TTEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHHTTS-TTSCCEEECCTTTTHHHHTT----------------
T ss_pred eeecC-CCcEEeHHHHhhcCCCCccCHHHHHHHHHHHHHhhhh-cCCCceeeeecHHHHHhhhc----------------
Confidence 44443 4799999999999999999999999999999887533 34678999999999999753
Q ss_pred hhhhhccceecccccCCCCccCeEEEeecCCCceeEEEEEcCC--cccccCCCCChHHHHHHHHHHHHHH--hhhcCccc
Q psy14159 178 AAKKRHSRVQSWTKNINVFEKDFIVVPINSNAHWFLAIICFPG--LKGCETPEGRAVEECQRFRSLRKRE--RIKLDEMQ 253 (264)
Q Consensus 178 ~~~~~~~~V~rWtkkvdIF~kd~I~IPIN~~~HW~LaVI~~p~--l~~~dS~~~~~~~~~~~~~~~~~~~--~~k~~~~~ 253 (264)
+|++|++|++++++|++|+||||||.+.||+|+||+.+. +.++||+++.+...++.+.++.+.+ .|++.+++
T Consensus 99 ----~~~~v~~w~~~~~l~~~~~i~iPin~~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~l~~~L~~e~~~k~~~~~~ 174 (238)
T 2xph_A 99 ----GYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFD 174 (238)
T ss_dssp ----CHHHHTTTTTTCCGGGSSEEEEEEEETTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHCSCCC
T ss_pred ----ccHHHHHHhccCCcccCCEEEEcccCCCceEEEEEEcccceEEEeecccCCCHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 478999999999999999999999999999999999886 8899999887766677777777777 36678899
Q ss_pred CCCCeEEe
Q psy14159 254 KTGRTLYR 261 (264)
Q Consensus 254 ~~~w~~~~ 261 (264)
..+|++..
T Consensus 175 ~~~w~~~~ 182 (238)
T 2xph_A 175 TNGWQLFS 182 (238)
T ss_dssp CTTCEEEE
T ss_pred cccceecc
Confidence 99999853
No 3
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=99.97 E-value=1.3e-30 Score=230.50 Aligned_cols=143 Identities=26% Similarity=0.466 Sum_probs=122.6
Q ss_pred ceEEeeCCCCeeeehhhhhccCCCCCccHHHHHHHHHHHHHhhcCCCCCCceEEechHHHHhhccCCccccCCCCCCCcc
Q psy14159 96 QTIYIYKPTGISINTEDYACLDKEQFINDVIIDFYLGFLLQEMATPHIREKTHIFSTFFYKRLTQKPTRKISGSIEGDPH 175 (264)
Q Consensus 96 ~~il~yp~~gi~It~~Dl~~L~~~~wLND~IInFYL~~L~~~~~~~~~~~~v~iFsSFFy~kL~~~~~~~~~~~~e~d~~ 175 (264)
+.++.|. ++.|+++|+.||.+++||||.|||||++||.++... ...+++|+||||||++|.+.
T Consensus 24 ~~~~~~~--~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~-~~~~~~~~f~s~f~~~l~~~-------------- 86 (226)
T 1th0_A 24 EILSSAF--KLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKK-QGYPALHVFSTFFYPKLKSG-------------- 86 (226)
T ss_dssp CEEEEET--TEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHH-HTCCCEEECCTTHHHHHHHH--------------
T ss_pred ceeeccC--CeEEEHHHHhhcCCCCccChHHHHHHHHHHHHhhhh-ccCCcEEEEeHHHHHHhhhc--------------
Confidence 4455554 899999999999999999999999999999876532 23679999999999999753
Q ss_pred chhhhhhccceecccccCCCCccCeEEEeecCCCceeEEEEEcCC--cccccCCCCChHHHHHHHHHHHHHH--hhhcCc
Q psy14159 176 ISAAKKRHSRVQSWTKNINVFEKDFIVVPINSNAHWFLAIICFPG--LKGCETPEGRAVEECQRFRSLRKRE--RIKLDE 251 (264)
Q Consensus 176 l~~~~~~~~~V~rWtkkvdIF~kd~I~IPIN~~~HW~LaVI~~p~--l~~~dS~~~~~~~~~~~~~~~~~~~--~~k~~~ 251 (264)
+|++|++|++++++|++|+||||||.+.||+|+||+.+. +.++||+++.+....+.++++.+.+ .|++.+
T Consensus 87 ------~~~~v~~w~~~~~l~~~~~i~iPin~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~l~~~l~~e~~~k~~~~ 160 (226)
T 1th0_A 87 ------GYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSD 160 (226)
T ss_dssp ------TGGGTGGGGTTCCGGGSSEEEEEEEETTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHHHHHHHHHHHHTSCC
T ss_pred ------ccHHHHHHhhcCCcccCCEEEEeEEeCcEEEEEEEEcCCCceEEEcCCCCCchHHHHHHHHHHHHHHHHhcCCC
Confidence 478999999999999999999999999999999999875 8899999887766677777777776 367788
Q ss_pred ccCCCCeEEe
Q psy14159 252 MQKTGRTLYR 261 (264)
Q Consensus 252 ~~~~~w~~~~ 261 (264)
++.++|++..
T Consensus 161 ~~~~~w~~~~ 170 (226)
T 1th0_A 161 LNLLEWTHHS 170 (226)
T ss_dssp CCGGGCEEEE
T ss_pred CCcccceecc
Confidence 8999999864
No 4
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=99.95 E-value=1.9e-27 Score=209.63 Aligned_cols=116 Identities=25% Similarity=0.502 Sum_probs=98.0
Q ss_pred CCeeeehhhhhccCCCCCccHHHHHHHHHHHHHhhcCCCCCCceEEechHHHHhhccCCccccCCCCCCCccchhhhhhc
Q psy14159 104 TGISINTEDYACLDKEQFINDVIIDFYLGFLLQEMATPHIREKTHIFSTFFYKRLTQKPTRKISGSIEGDPHISAAKKRH 183 (264)
Q Consensus 104 ~gi~It~~Dl~~L~~~~wLND~IInFYL~~L~~~~~~~~~~~~v~iFsSFFy~kL~~~~~~~~~~~~e~d~~l~~~~~~~ 183 (264)
.++.|+.+|+.||.+++||||.|||||++||.++ .+++|+||||||++|.+. +|
T Consensus 31 ~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~l~~~------~~~~~~f~s~f~~~l~~~--------------------~~ 84 (221)
T 1euv_A 31 DNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKS------TPNTVAFNSFFYTNLSER--------------------GY 84 (221)
T ss_dssp TTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHH------STTEEECCTHHHHHHHHH--------------------TG
T ss_pred CCeEEEHHHHhhhcCCCCCCHHHHHHHHHHHHhc------CCCeEEEEcHHHHHhhhh--------------------cc
Confidence 4899999999999999999999999999999875 358999999999999753 58
Q ss_pred cceecccc--cCCCCccCeEEEeecC-CCceeEEEEEcCC--cccccCCCCCh-H---HHHHHHHHHHHHH
Q psy14159 184 SRVQSWTK--NINVFEKDFIVVPINS-NAHWFLAIICFPG--LKGCETPEGRA-V---EECQRFRSLRKRE 245 (264)
Q Consensus 184 ~~V~rWtk--kvdIF~kd~I~IPIN~-~~HW~LaVI~~p~--l~~~dS~~~~~-~---~~~~~~~~~~~~~ 245 (264)
++|++|++ ++++|++|+||||||. +.||+|+||+++. +.++||+++.+ . ...+.++.+...+
T Consensus 85 ~~v~rw~~~~~~~~~~~~~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~e 155 (221)
T 1euv_A 85 QGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEE 155 (221)
T ss_dssp GGTTTTTGGGTSCGGGCSEEEEEEEETTTEEEEEEEETTTTEEEEECSSCCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcccCCEEEEEEEcCCCeEEEEEEEcCCCEEEEEecCCCCCcchHHHHHHHHHHHHHHH
Confidence 89999998 6899999999999997 5999999999986 78999996432 1 2334445555555
No 5
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=99.94 E-value=3e-27 Score=206.60 Aligned_cols=124 Identities=15% Similarity=0.269 Sum_probs=103.8
Q ss_pred ceEEeeCCCCeeeehhhhhccCCCCCccHHHHHHHHHHHHHhhcCCCCCCceEEec---hHHHHhhccCCccccCCCCCC
Q psy14159 96 QTIYIYKPTGISINTEDYACLDKEQFINDVIIDFYLGFLLQEMATPHIREKTHIFS---TFFYKRLTQKPTRKISGSIEG 172 (264)
Q Consensus 96 ~~il~yp~~gi~It~~Dl~~L~~~~wLND~IInFYL~~L~~~~~~~~~~~~v~iFs---SFFy~kL~~~~~~~~~~~~e~ 172 (264)
+.++.|. ++.|+.+|+.||.+++||||+|||||++||.++..++ ..+++|+|| ||||+.+.
T Consensus 3 ~~~l~~~--~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~-~~~~~~~~~p~~s~f~~~~~------------- 66 (212)
T 2bkr_A 3 PVVLSYM--DSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHD-SSDHVSFISPEVTQFIKCTS------------- 66 (212)
T ss_dssp CEEEEET--TEEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGG-GTTTEEEECHHHHHHHHHCC-------------
T ss_pred CEEEEEC--CEEEeHHHHhhcCCCCCcCHHHHHHHHHHHHHhhccC-CCCcEEEEChHHHHHHHhCC-------------
Confidence 4677787 9999999999999999999999999999999987533 367899999 99996542
Q ss_pred CccchhhhhhccceecccccCCCCccCeEEEeecC-------CCceeEEEEEcCC--cccccCCCCChHHHHHHHHHHHH
Q psy14159 173 DPHISAAKKRHSRVQSWTKNINVFEKDFIVVPINS-------NAHWFLAIICFPG--LKGCETPEGRAVEECQRFRSLRK 243 (264)
Q Consensus 173 d~~l~~~~~~~~~V~rWtkkvdIF~kd~I~IPIN~-------~~HW~LaVI~~p~--l~~~dS~~~~~~~~~~~~~~~~~ 243 (264)
.+++|++|++++++|++++||||||. ++||+|+||+.+. +.+|||+++.+....+++.+..+
T Consensus 67 ---------~~~~v~~~~~~~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~~~i~~~DSl~~~n~~~~~~l~~~l~ 137 (212)
T 2bkr_A 67 ---------NPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVHAKQVAEKLE 137 (212)
T ss_dssp ---------CHHHHHHHHGGGTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTTTTHHHHHHHHHHHH
T ss_pred ---------CHHHHHHHhcccccccCCEEEEEEecCCCCCCCCCCeEEEEEEecCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 14679999999999999999999995 7999999999875 88999998777665555433333
Q ss_pred H
Q psy14159 244 R 244 (264)
Q Consensus 244 ~ 244 (264)
.
T Consensus 138 ~ 138 (212)
T 2bkr_A 138 A 138 (212)
T ss_dssp H
T ss_pred H
Confidence 3
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=99.84 E-value=3.5e-21 Score=165.99 Aligned_cols=95 Identities=16% Similarity=0.223 Sum_probs=75.1
Q ss_pred CCCCccHHHHHHHHHHHHHhhcCCCCCCceEEechHHHHhhccCCccccCCCCCCCccchhhhhhccceecccccCCCCc
Q psy14159 118 KEQFINDVIIDFYLGFLLQEMATPHIREKTHIFSTFFYKRLTQKPTRKISGSIEGDPHISAAKKRHSRVQSWTKNINVFE 197 (264)
Q Consensus 118 ~~~wLND~IInFYL~~L~~~~~~~~~~~~v~iFsSFFy~kL~~~~~~~~~~~~e~d~~l~~~~~~~~~V~rWtkkvdIF~ 197 (264)
+++||||+|||||++||.++........++|+|+++++..+.... ..++.++.+|++..++
T Consensus 1 ~~~WLND~iI~fy~~~L~~~~~~~~~~~~v~f~~p~~~~~l~~~~-----------------~~~~~~~~~~~~~~~~-- 61 (186)
T 2oix_A 1 ATSWLLDGHLRAYTDDLARRLRGEPNAHLLHFADSQVVTMLSSAD-----------------PDQQARAQRLLAGDDI-- 61 (186)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTTTSTTGGGEEECCHHHHHHTTCSS-----------------HHHHHHHHHHHHSTTS--
T ss_pred CCCCcChHHHHHHHHHHHHHhhhccCcceEEEECHHHHHHHHhCC-----------------HHHHHHHHHHcccccc--
Confidence 479999999999999999987543333569999987766664321 0246788888887666
Q ss_pred cCeEEEeecC-CCceeEEEEEcCC--c---ccccCCCCCh
Q psy14159 198 KDFIVVPINS-NAHWFLAIICFPG--L---KGCETPEGRA 231 (264)
Q Consensus 198 kd~I~IPIN~-~~HW~LaVI~~p~--l---~~~dS~~~~~ 231 (264)
+|+||||||. ++||+|+||+.+. + .++|||++.+
T Consensus 62 ~~~i~iPin~~~~HWsLlvi~~~~~~~~~~~~~DSl~~~~ 101 (186)
T 2oix_A 62 PPIVFLPINQPNAHWSLLVVDRRNKDAVAAYHYDSMAQKD 101 (186)
T ss_dssp CSEEEEEEEETTTEEEEEEEECSSTTSCEEEEECCCSSCC
T ss_pred cCEEEEEEeCCCCccEEEEEECCCCeeeeeEEEcCCCCCC
Confidence 9999999997 8999999999886 6 8899997644
No 7
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=24.84 E-value=31 Score=29.13 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=23.6
Q ss_pred CCCCCccCCCCCCCCceeEEE-------cCCCCChHHHHHHH
Q psy14159 3 KNSKFYFDPSSPDETHRRITL-------LPEKIPDEVKCILS 37 (264)
Q Consensus 3 ~~~~~~~dp~~~~~~~~~i~l-------~~~~~~~~~~~~l~ 37 (264)
|++-+||||.|+.+.-|-... +..++|.++.....
T Consensus 88 Dp~s~YyDpkS~~~~prW~~VdV~~v~~~~~~vtL~eLK~~~ 129 (176)
T 3eop_A 88 EKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKSYH 129 (176)
T ss_dssp CTTSTTCCTTCCTTSCSCEEEEEEEEEEEEEEEEHHHHHHHH
T ss_pred CCCCCCCCccCcCCCCCEEEEEEEEeeecCCcccHHHHhcCc
Confidence 678899999997776552222 23478877766553
No 8
>1n6j_G Calcineurin-binding protein cabin 1; MADS-BOX, protein-DNA complex, histone deacetylases, transcription/DNA complex; 2.20A {Homo sapiens}
Probab=17.87 E-value=1.1e+02 Score=18.73 Aligned_cols=17 Identities=24% Similarity=0.221 Sum_probs=14.2
Q ss_pred CCChHHHHHHHHHhhcc
Q psy14159 27 KIPDEVKCILSDIYSKT 43 (264)
Q Consensus 27 ~~~~~~~~~l~~~~~~~ 43 (264)
+|+++.|.+|+......
T Consensus 8 siseetkqklk~~ils~ 24 (35)
T 1n6j_G 8 SISEETKQKLKSAILSA 24 (35)
T ss_dssp CCCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHhh
Confidence 79999999999876543
No 9
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=15.99 E-value=83 Score=26.00 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=33.3
Q ss_pred CCCCCccCCCCCCCCceeEEE-------cCCCCChHHHHH---HHHHhhccCCCCCCCCCCCcccccCCHHHHhhhh
Q psy14159 3 KNSKFYFDPSSPDETHRRITL-------LPEKIPDEVKCI---LSDIYSKTSSGRSEEPQDGPCLEELSIKEANNIL 69 (264)
Q Consensus 3 ~~~~~~~dp~~~~~~~~~i~l-------~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~ 69 (264)
|+..+||||.|..+.-|-... +..+++.++... |+++-.=..+.++ -+.-++.+|...|+
T Consensus 77 dp~s~YyDpks~~~~prw~~VdV~~v~~~~~pv~L~elK~~~~L~~m~Lv~~g~RL-------SV~PVt~~ew~~I~ 146 (157)
T 2eve_A 77 DPDSHYHDAKATTEKNPWSALDIGFVDIFKNVLGLGYLKQQSQLEQLPLVQKGSRL-------SVMPVTAEQWAAIL 146 (157)
T ss_dssp CTTSTTCCTTCCSSCCCCEEEEEEEEEEEEEEEEHHHHHTCGGGTTCGGGSTTCCC-------SEEEECHHHHHHHH
T ss_pred cccCcCcCcccCCCCCCEEEEEEEEeeecCCccCHHHHhcCcccccCceeeccCCc-------CceecCHHHHHHHH
Confidence 567899999997765532222 244676665443 3332221111122 25667778777775
No 10
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*
Probab=15.13 E-value=2.9e+02 Score=25.00 Aligned_cols=47 Identities=11% Similarity=0.228 Sum_probs=34.9
Q ss_pred CeEEEe------ecCCCceeEEEEEcCCcccccCCCCChHHHHHHHHHHHHHH
Q psy14159 199 DFIVVP------INSNAHWFLAIICFPGLKGCETPEGRAVEECQRFRSLRKRE 245 (264)
Q Consensus 199 d~I~IP------IN~~~HW~LaVI~~p~l~~~dS~~~~~~~~~~~~~~~~~~~ 245 (264)
.+|++| -+...|..|||+....+..........+.-++.++..-++.
T Consensus 163 gFvllpDlkWd~~~~~~lhlLaI~~~~~I~SlrdL~~~HlpLL~~M~~~~~~~ 215 (301)
T 3bl9_A 163 GFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILHQGQEA 215 (301)
T ss_dssp CEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHH
T ss_pred CEEEeccCccCCCcccccEEEEEecccCCCChHHCCHhHHHHHHHHHHHHHHH
Confidence 399999 34588999999987778888888777777677665444333
Done!