RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14159
         (264 letters)



>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 226

 Score = 79.5 bits (195), Expect = 2e-18
 Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 21/115 (18%)

Query: 105 GISINTEDYACLDKEQFINDVIIDFYLGFLLQEMATPHIREKTHIFSTFFYKRLTQKPTR 164
            + I   D   L    ++ND +I+FY+  LL E          H+FSTFFY +L      
Sbjct: 31  KLRITRGDIQTLKNYHWLNDEVINFYMN-LLVERNKKQGYPALHVFSTFFYPKLKSGG-- 87

Query: 165 KISGSIEGDPHISAAKKRHSRVQSWTKNINVFEKDFIVVPINSNAHWFLAIICFP 219
                             +  V+ WTK +N+FE++ I+VPI+   HW L +I   
Sbjct: 88  ------------------YQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVIDLR 124


>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 225

 Score = 75.6 bits (185), Expect = 4e-17
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 29/143 (20%)

Query: 85  PPIPAPVSQPVQTIY--------IYKPTGISINTEDYACLDKEQFINDVIIDFYLGFLLQ 136
           P I   + + ++ ++        + +   ++I  +D   L+   ++ND II+FY+  L  
Sbjct: 3   PEITEEMEKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNML-M 61

Query: 137 EMATPHIREKTHIFSTFFYKRLTQKPTRKISGSIEGDPHISAAKKRHSRVQSWTKNINVF 196
           E +        H F+TFF+ +L                        +  V+ WTK ++VF
Sbjct: 62  ERSKEKGLPSVHAFNTFFFTKLKTA--------------------GYQAVKRWTKKVDVF 101

Query: 197 EKDFIVVPINSNAHWFLAIICFP 219
             D ++VPI+   HW LA++ F 
Sbjct: 102 SVDILLVPIHLGVHWCLAVVDFR 124


>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 212

 Score = 69.4 bits (169), Expect = 6e-15
 Identities = 13/112 (11%), Positives = 31/112 (27%), Gaps = 20/112 (17%)

Query: 106 ISINTEDYACLDKEQFINDVIIDFYLGFLLQEMATPHIREKTHIFSTFFYKRLTQKPTRK 165
             +   D + LD   ++ND II F               +     S    + +       
Sbjct: 11  SLLRQSDVSLLDPPSWLNDHIIGFAFE-YFANSQFHDSSDHVSFISPEVTQFIKC----- 64

Query: 166 ISGSIEGDPHISAAKKRHSRVQSWTKNINVFEKDFIVVPINSNAHWFLAIIC 217
                             + +  + + +++  K  + + IN N++       
Sbjct: 65  --------------TSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGSH 102


>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 221

 Score = 61.7 bits (149), Expect = 4e-12
 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 29/118 (24%)

Query: 105 GISINTEDYACLDKEQFINDVIIDFYLGFLLQEMATPHIREKTHIFSTFFYKRLTQKPTR 164
            I I   D+  L   +++ND II+F++ ++ +          T  F++FFY  L++    
Sbjct: 32  NIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKS------TPNTVAFNSFFYTNLSE---- 81

Query: 165 KISGSIEGDPHISAAKKRHSRVQSWT--KNINVFEKDFIVVPIN-SNAHWFLAIICFP 219
                           + +  V+ W   K   + + D I  PIN + +HW L II   
Sbjct: 82  ----------------RGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLK 123


>d1jmaa_ b.1.1.1 (A:) HSV glycoprotein D {Herpes simplex virus type
           1 [TaxId: 10298]}
          Length = 259

 Score = 27.6 bits (61), Expect = 1.5
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 63  KEANNILVKSSPPELRNVNSAAPPIPAPVSQPVQTIYIY 101
           K+   +   + PP +R V      +P P   P   I +Y
Sbjct: 20  KDLPVLDQLTDPPGVRRVYHIQAGLPDPFQPPSLPITVY 58


>d1ne8a_ b.34.6.2 (A:) PemK-like protein YdcE {Bacillus subtilis
           [TaxId: 1423]}
          Length = 116

 Score = 24.6 bits (53), Expect = 7.3
 Identities = 15/102 (14%), Positives = 24/102 (23%), Gaps = 7/102 (6%)

Query: 170 IEGDPHI-SAAKKRHSRVQSWTKNINVFEKDFIVVPINSN---AHWFLAIICFPGLKGCE 225
            +  P + S        +       N F    IV  I +    A     +       G E
Sbjct: 11  ADLSPVVGSEQGGVRPVLVIQNDIGNRFSPTAIVAAITAQIQKAKLPTHVEIDAKRYGFE 70

Query: 226 TP---EGRAVEECQRFRSLRKRERIKLDEMQKTGRTLYRLNG 264
                    +    + R   K   +  + M K    L     
Sbjct: 71  RDSVILLEQIRTIDKQRLTDKITHLDDEMMDKVDEALQISLA 112


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0483    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,035,563
Number of extensions: 49281
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 9
Length of query: 264
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 180
Effective length of database: 1,254,276
Effective search space: 225769680
Effective search space used: 225769680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.4 bits)