BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1416
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/63 (73%), Positives = 54/63 (85%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNKNDDP++KVV TEDA +FA QMGIQLFETSAK+N+NVEEMF IT LVLR+KK+
Sbjct: 118 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNL 177
Query: 152 ERQ 154
+Q
Sbjct: 178 AKQ 180
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 32/38 (84%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQ 38
MGIQLFETSAK+N+NVEEMF IT LVLR+KK+ +Q
Sbjct: 143 MGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 180
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 37/52 (71%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143
LVGNK D ++VV ED +R A+ +G + FE SAK+NINV+++F + +++
Sbjct: 132 LVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLV 27
+G + FE SAK+NINV+++F + +++
Sbjct: 157 LGFEFFEASAKENINVKQVFERLVDVI 183
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 149
LVGNK D ++VV +E ++ A+ +G + FE SAKDNINV++ F + +++ E
Sbjct: 118 LVGNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSE 175
Score = 33.5 bits (75), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 33
+G + FE SAKDNINV++ F + +++ E
Sbjct: 143 LGFEFFEASAKDNINVKQTFERLVDVICEKXSE 175
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 32/48 (66%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK+D KKVV A+ FA+ +GI ETSAK+ NVE+ FM +
Sbjct: 119 LVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTM 166
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 1 MGIQLFETSAKDNINVEEMFMAI 23
+GI ETSAK+ NVE+ FM +
Sbjct: 144 LGIPFLETSAKNATNVEQAFMTM 166
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 32/48 (66%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK+D KKVV A+ FA+ +GI ETSAK+ NVE+ FM +
Sbjct: 119 LVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTM 166
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 1 MGIQLFETSAKDNINVEEMFMAI 23
+GI ETSAK+ NVE+ FM +
Sbjct: 144 LGIPFLETSAKNATNVEQAFMTM 166
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143
LVGNK D ++VV +E ++ A+ +G + FE SAKDNINV++ F + +++
Sbjct: 115 LVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLV 27
+G + FE SAKDNINV++ F + +++
Sbjct: 140 LGFEFFEASAKDNINVKQTFERLVDVI 166
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D KKVV A+ FA+ +GI ETSAK+ NVE+ FM +
Sbjct: 109 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 156
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 1 MGIQLFETSAKDNINVEEMFMAI 23
+GI ETSAK+ NVE+ FM +
Sbjct: 134 LGIPFLETSAKNATNVEQSFMTM 156
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D KKVV A+ FA+ +GI ETSAK+ NVE+ FM +
Sbjct: 126 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 1 MGIQLFETSAKDNINVEEMFMAI 23
+GI ETSAK+ NVE+ FM +
Sbjct: 151 LGIPFLETSAKNATNVEQSFMTM 173
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143
LVGNK D +++VV TE Q A Q+G FE SAK+NI+V + F + + +
Sbjct: 133 LVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLV 27
+G FE SAK+NI+V + F + + +
Sbjct: 158 LGFDFFEASAKENISVRQAFERLVDAI 184
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D KKVV A+ FA+ +GI ETSAK+ NVE+ FM +
Sbjct: 135 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 182
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 1 MGIQLFETSAKDNINVEEMFMAI 23
+GI ETSAK+ NVE+ FM +
Sbjct: 160 LGIPFLETSAKNATNVEQSFMTM 182
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D KKVV A+ FA+ +GI ETSAK+ NVE+ FM +
Sbjct: 116 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 163
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 1 MGIQLFETSAKDNINVEEMFMAI 23
+GI ETSAK+ NVE+ FM +
Sbjct: 141 LGIPFLETSAKNATNVEQSFMTM 163
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D KKVV A+ FA+ +GI ETSAK+ NVE+ FM +
Sbjct: 116 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 163
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 1 MGIQLFETSAKDNINVEEMFMAI 23
+GI ETSAK+ NVE+ FM +
Sbjct: 141 LGIPFLETSAKNATNVEQSFMTM 163
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D KKVV A+ FA+ +GI ETSAK+ NVE+ FM +
Sbjct: 126 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 1 MGIQLFETSAKDNINVEEMFMAI 23
+GI ETSAK+ NVE+ FM +
Sbjct: 151 LGIPFLETSAKNATNVEQSFMTM 173
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 89 GLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
L L+GNK D ++VV ED ++ A + G+ ETSAK +NV+ F AI
Sbjct: 118 ALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA 169
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
LVGNK+D + V T++A+ FA + G+ ETSA D+ NVE F I + R
Sbjct: 130 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 183
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
LVGNK+D + V T++A+ FA + G+ ETSA D+ NVE F I + R
Sbjct: 118 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 171
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
+ L GNK D K+ V ++AQ +A+ + ETSAK +NV E+FMAI
Sbjct: 113 IALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 163
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
+ L GNK D K+ V ++AQ +A+ + ETSAK +NV E+FMAI
Sbjct: 111 IALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 161
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
+ L GNK D K+ V ++AQ +A+ + ETSAK +NV E+FMAI
Sbjct: 113 IALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 163
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
LVGNK D KKVV A+ FA+ +GI ETSAK+ NVE+ F
Sbjct: 143 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 187
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
+ LVGNK+D + V T++A+ FA + G+ ETSA D+ NVE F I
Sbjct: 113 IXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 162
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
LVGNK+D Q + V TE+A+ FA G+ ETSA D+ NVE F
Sbjct: 120 LVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF 164
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
LVGNK+D Q + V TE+A+ FA G+ ETSA D+ NVE F
Sbjct: 135 LVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF 179
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 149
+ L GNK D K++V E+AQ +A+ + ETSAK +NV ++F+AI + +S+ +
Sbjct: 116 IALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQ 175
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 16/95 (16%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK D K+VV + A+ FA+ + ETSA D+ NVE+ F+ + R KE
Sbjct: 118 LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA----RQIKESM 173
Query: 152 ERQVLNSDT--------VNIRKHT-TKPGGKKKCC 177
+Q LN T VN++ + T GG CC
Sbjct: 174 SQQNLNETTQKKEDKGNVNLKGQSLTNTGG---CC 205
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 5 LFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDT 44
ETSA D+ NVE+ F+ + R KE +Q LN T
Sbjct: 147 FLETSALDSTNVEDAFLTMA----RQIKESMSQQNLNETT 182
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
+ LVGNK+D + V T++A+ FA + G+ ETSA D+ NVE F I
Sbjct: 119 IXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 168
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK+D + V T++A+ FA + G+ ETSA D+ NVE F I
Sbjct: 139 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
+ L GNK D K+ V ++AQ +A+ + ETSAK ++NV E+FMAI
Sbjct: 113 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 163
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 5 LFETSAKDNINVEEMFMAIT 24
ETSAK ++NV E+FMAI
Sbjct: 144 FMETSAKTSMNVNEIFMAIA 163
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
+ L GNK D K+ V ++AQ +A+ + ETSAK ++NV E+FMAI
Sbjct: 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 5 LFETSAKDNINVEEMFMAIT 24
ETSAK ++NV E+FMAI
Sbjct: 145 FMETSAKTSMNVNEIFMAIA 164
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK+D + V T++A+ FA + G+ ETSA D+ NVE F I
Sbjct: 139 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
+ L GNK D K+ V ++AQ +A+ + ETSAK ++NV E+FMAI
Sbjct: 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 5 LFETSAKDNINVEEMFMAIT 24
ETSAK ++NV E+FMAI
Sbjct: 145 FMETSAKTSMNVNEIFMAIA 164
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
+ L GNK D K+ V ++AQ +A+ + ETSAK ++NV E+FMAI
Sbjct: 115 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 165
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 5 LFETSAKDNINVEEMFMAIT 24
ETSAK ++NV E+FMAI
Sbjct: 146 FMETSAKTSMNVNEIFMAIA 165
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
+ L GNK D K+ V ++AQ +A+ + ETSAK ++NV E+FMAI
Sbjct: 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 5 LFETSAKDNINVEEMFMAIT 24
ETSAK ++NV E+FMAI
Sbjct: 145 FMETSAKTSMNVNEIFMAIA 164
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
+ L GNK D K+ V ++AQ +A+ + ETSAK ++NV E+FMAI
Sbjct: 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 5 LFETSAKDNINVEEMFMAIT 24
ETSAK ++NV E+FMAI
Sbjct: 145 FMETSAKTSMNVNEIFMAIA 164
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
+ L GNK D K+ V ++AQ +A+ + ETSAK ++NV E+FMAI
Sbjct: 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 5 LFETSAKDNINVEEMFMAIT 24
ETSAK ++NV E+FMAI
Sbjct: 145 FMETSAKTSMNVNEIFMAIA 164
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
+ L GNK D K+ V ++AQ +A+ + ETSAK ++NV E+FMAI
Sbjct: 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 5 LFETSAKDNINVEEMFMAIT 24
ETSAK ++NV E+FMAI
Sbjct: 145 FMETSAKTSMNVNEIFMAIA 164
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 15/95 (15%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK D K+VV + A+ FA+ + ETSA D+ NVE+ F+ + R KE
Sbjct: 118 LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA----RQIKESM 173
Query: 152 ERQVLNSDT--------VNIRKHT-TKPGGKKKCC 177
+Q LN T VN++ + T GG CC
Sbjct: 174 SQQNLNETTQKKEDKGNVNLKGQSLTNTGG--GCC 206
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 5 LFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDT 44
ETSA D+ NVE+ F+ + R KE +Q LN T
Sbjct: 147 FLETSALDSTNVEDAFLTMA----RQIKESMSQQNLNETT 182
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR--SKKE 149
LVGNK+D + V T++A+ FA + + ETSA D+ NVEE F I + R S+K+
Sbjct: 115 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 174
Query: 150 QKERQVLNSDTVNIRKHTTKPG 171
+R H PG
Sbjct: 175 IADRAA----------HDESPG 186
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVG K D KKVV A+ FA+ +GI ETSAK+ NVE+ FM +
Sbjct: 118 LVGIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 165
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 1 MGIQLFETSAKDNINVEEMFMAI 23
+GI ETSAK+ NVE+ FM +
Sbjct: 143 LGIPFLETSAKNATNVEQSFMTM 165
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQM-GIQLFETSAKDNINVEEMFMAITNLVLR 145
L LVGNK D + + + ++FA Q+ G++ E SAKDN NV+E+F+ + + +L+
Sbjct: 134 LLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 2 GIQLFETSAKDNINVEEMFMAITNLVLR 29
G++ E SAKDN NV+E+F+ + + +L+
Sbjct: 163 GMRFCEASAKDNFNVDEIFLKLVDDILK 190
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
LVGNK D K+VV +++ + A+ GI+ ETSAK+ NVE+ F
Sbjct: 119 LVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAF 163
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
+ L GNK+D + V EDAQ +A + G+ ETSAK NV+E+F I + R
Sbjct: 120 MALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR 175
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143
L LVGNK+D + +VV + + A ++GI E+SAK++ NV E+F + L+
Sbjct: 111 LLLVGNKSD-XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLV 27
+GI E+SAK++ NV E+F + L+
Sbjct: 137 LGIPFIESSAKNDDNVNEIFFTLAKLI 163
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143
L LVGNK+D + +VV + + A ++GI E+SAK++ NV E+F + L+
Sbjct: 111 LLLVGNKSD-XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLV 27
+GI E+SAK++ NV E+F + L+
Sbjct: 137 LGIPFIESSAKNDDNVNEIFFTLAKLI 163
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143
L LVGNK+D + +VV + + A ++GI E+SAK++ NV E+F + L+
Sbjct: 128 LLLVGNKSD-METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLV 27
+GI E+SAK++ NV E+F + L+
Sbjct: 154 LGIPFIESSAKNDDNVNEIFFTLAKLI 180
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
L+GNK D P ++ V A+ A++ GI FETSA NVE+ + +L+++ + EQ
Sbjct: 146 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK-RMEQC 204
Query: 152 ERQVLNSDTVN 162
+ DTVN
Sbjct: 205 VEKTQIPDTVN 215
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 2 GIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVN 46
GI FETSA NVE+ + +L+++ + EQ + DTVN
Sbjct: 172 GIPYFETSAATGQNVEKAVETLLDLIMK-RMEQCVEKTQIPDTVN 215
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143
L LVGNK+D + +VV + + A ++GI E+SAK++ NV E+F + L+
Sbjct: 115 LLLVGNKSD-METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 167
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLV 27
+GI E+SAK++ NV E+F + L+
Sbjct: 141 LGIPFIESSAKNDDNVNEIFFTLAKLI 167
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
+ + GNK D + V +DA+ +A +G + ETSAK+ IN+EE+F I+
Sbjct: 131 MAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGIS 181
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 1 MGIQLFETSAKDNINVEEMFMAIT 24
+G + ETSAK+ IN+EE+F I+
Sbjct: 158 IGAIVVETSAKNAINIEELFQGIS 181
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143
L LVGNK+D + +VV + + A ++GI E+SAK++ NV E+F + L+
Sbjct: 111 LLLVGNKSD-METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLV 27
+GI E+SAK++ NV E+F + L+
Sbjct: 137 LGIPFIESSAKNDDNVNEIFFTLAKLI 163
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137
L+GNK+D ++ V E+ + FA + G+ ETSAK NVEE F+
Sbjct: 120 LIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFI 165
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
L+GNK+D ++ V E+ + FA + G+ ETSAK NVEE F+ + R
Sbjct: 131 LIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 184
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAK---DNINVEEMFMAITN 141
LVGNK D V T+ AQ+FA+ + LFETSAK DN +VE +FM + +
Sbjct: 132 LVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAH 184
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
LVGNK D K+ V TE+ +R A ++ + ETSAK NV+++F
Sbjct: 124 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 168
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVL-RSKKEQ 150
L+GNK D P ++ V A+ A + GI FETSA NVE+ + +L++ R +K
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEKCV 191
Query: 151 KERQVLNSDTVN----IRKHTTKPGGKKKCC 177
++ QV DTVN + KP KK C
Sbjct: 192 EKTQV--PDTVNGGNSGKLDGEKPAEKKCAC 220
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
+ L GNK D K+ V ++AQ +A+ + ETSAK + NV E+F AI
Sbjct: 115 IALSGNKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIA 165
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKK 148
L +VGNK+D +++ V E+A+ A + G+Q ETSAK NV+++F + + R+KK
Sbjct: 116 LLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI-RTKK 173
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137
L+GNK D ++ V E+A++FA + G+ E SAK NVE+ F+
Sbjct: 140 LIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 185
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137
L+GNK D ++ V E+A++FA + G+ E SAK NVE+ F+
Sbjct: 125 LIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 170
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKK 148
L +VGNK+D +++ V E+A+ A + G+Q ETSAK NV+++F + + R+KK
Sbjct: 112 LLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI-RTKK 169
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQ-LFETSAKDNINVEEMFMAI-TNLVLR 145
L+GNK+D + + V +AQ A I ETSAKD+ NVEE F+ + T L++R
Sbjct: 139 LIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 194
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Query: 7 ETSAKDNINVEEMFMAI-TNLVLR 29
ETSAKD+ NVEE F+ + T L++R
Sbjct: 171 ETSAKDSSNVEEAFLRVATELIMR 194
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
+VGNK D +++ V ++A+ +A +G + + TSAK N +EE+F+ +
Sbjct: 116 IVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
+VGNK D +++ V ++A+ +A +G + + TSAK N +EE+F+ +
Sbjct: 130 IVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 177
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
+VGNK D +++ V ++A+ +A +G + + TSAK N +EE+F+ +
Sbjct: 116 IVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVL 144
LVGNK D K+ + E+ ++ A ++ + ETSAK NV+++F + + +L
Sbjct: 112 LVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALL 164
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
++GNK D K+ V E ++ A GI+ ETSAK NINVE F +
Sbjct: 118 ILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 2 GIQLFETSAKDNINVEEMFMAIT 24
GI+ ETSAK NINVE F +
Sbjct: 144 GIKFMETSAKANINVENAFFTLA 166
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
++GNK D K+ V E ++ A GI+ ETSAK NINVE F +
Sbjct: 116 ILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 164
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 2 GIQLFETSAKDNINVEEMFMAIT 24
GI+ ETSAK NINVE F +
Sbjct: 142 GIKFMETSAKANINVENAFFTLA 164
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D K+VV + A+ FA+ + ETSA D+ NVE+ F+ +
Sbjct: 131 LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTM 178
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVL-RSKKEQ 150
L+GNK D P ++ V A+ A + GI FETSA NVE+ + +L+ R +K
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKRXEKCV 191
Query: 151 KERQVLNSDTVN 162
++ QV DTVN
Sbjct: 192 EKTQV--PDTVN 201
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
LVGNK D+ Q++V T +AQ A + ETSAK N NV+E+F + L R
Sbjct: 119 LVGNKCDETQREVD-TREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETR 171
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
LVGNK D K+ V E+ +R A ++ + ETSAK NV+++F
Sbjct: 116 LVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 160
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
LVGNK D K+ V E+ +R A ++ + ETSAK NV+++F
Sbjct: 111 LVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 155
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
LVGNK D K+ V E+ +R A ++ + ETSAK NV+++F
Sbjct: 123 LVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 167
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
LVGNK D K+ V E+ +R A ++ + ETSAK NV+++F
Sbjct: 116 LVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 160
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
LVGNK D K+ V E+ +R A ++ + ETSAK NV+++F
Sbjct: 126 LVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 170
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
L+GNK D P ++ V A+ A + GI FETSA NVE+ + +L+++
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMK 185
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
FP + L+GNK D ++ V E+ Q+ A Q+ + E SAK +NV++ F + V+R
Sbjct: 111 FP--MILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVR-VIR 167
Query: 146 SKKEQ 150
+EQ
Sbjct: 168 KFQEQ 172
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAK---DNINVEEMFMAITN 141
LVGNK D V T+ AQ+FA+ LFETSAK DN +VE +F + +
Sbjct: 141 LVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAH 193
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNL 142
+ LVGNK D+ + V + +A+ A ETSAK N NV+E+F + NL
Sbjct: 112 IMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNL 164
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 92 LVGNKND-DPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVL 144
L GNK D DP+++V E A RFA + + ETSA NVEE F+ +L
Sbjct: 135 LCGNKKDLDPEREVTFLE-ASRFAQENELMFLETSALTGENVEEAFLKCARTIL 187
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK D +++ V + A+ F+ + ETSAK++ NVE++F+ +L R E +
Sbjct: 136 LVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL---DLACRLISEAR 192
Query: 152 ERQVLN 157
+ ++N
Sbjct: 193 QNTLVN 198
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
L GNK+D ++ V E+A+ A + GI FETSA + N+ + +L+++
Sbjct: 132 LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMK 185
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 90 LRLVGNKNDDPQK---KVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
+ LVGNK D Q+ + V E+ ++ A + G+ FETSAK NV ++F+ I
Sbjct: 111 IALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGI 163
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
L+GNK D P ++ V A+ A + GI FETSA NVE+ + +L+ +
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXK 185
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
+ GNK D + V+ DA+ +A+ + ETSAK+ IN+ E+F+ I+
Sbjct: 115 IAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS 163
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
+ GNK D + V+ DA+ +A+ + ETSAK+ IN+ E+F+ I+
Sbjct: 116 IAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS 164
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 86 FPSGLRLVGNKND-DPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLV 143
FP ++GNK D + KK+V + AQ A +G I LF TSAK+ INV+ F I
Sbjct: 119 FP--FVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176
Query: 144 LR 145
L+
Sbjct: 177 LQ 178
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK+D K+ V E+A+ A+Q + ETSAK NV+++F +
Sbjct: 114 LVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK+D K+ V E+A+ A Q + ETSAK NV+++F + + K E
Sbjct: 124 LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 183
Query: 152 ERQVLNSDTVNIRKHTTKPGGKKKCC 177
+ + ++ K +++CC
Sbjct: 184 KEKNGKKKRKSLAKRI-----RERCC 204
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 149
LVGNK+D K+ V E+A+ A Q + ETSAK NV+++F + + K E
Sbjct: 128 LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME 185
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 149
LVGNK+D K+ V E+A+ A Q + ETSAK NV+++F + + K E
Sbjct: 116 LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME 173
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK+D K+ V E+A+ A Q + ETSAK NV+++F +
Sbjct: 116 LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL 163
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV--LRSKKE 149
LVGNK+D +V+ DA ++A + + ETSA + NVE F + N + +R KK+
Sbjct: 118 LVGNKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKKQ 177
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK D ++ V +A F + FE SAK +NV+E F + V R +EQ+
Sbjct: 119 LVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV-RKYQEQE 177
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
L+GNK+D + V TE+++ FA + + ETSA ++ NV++ F + N + +
Sbjct: 123 LIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQ 176
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D P + V T+ A A GI ETSAK VE+ F +
Sbjct: 131 LVGNKCDLP-TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL 177
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRF-ANQMGIQLFETSAKDNINVEEMFMAITNLVL 144
FP ++GNK D ++V T+ AQ + ++ I FETSAK+ INVE+ F I L
Sbjct: 118 FP--FVVLGNKIDFENRQVA-TKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
Query: 145 RSKKE 149
+ + E
Sbjct: 175 KQETE 179
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 3 IQLFETSAKDNINVEEMFMAITNLVLRSKKE 33
I FETSAK+ INVE+ F I L+ + E
Sbjct: 149 IPYFETSAKEAINVEQAFQTIARNALKQETE 179
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRF-ANQMGIQLFETSAKDNINVEEMFMAITNLVL 144
FP ++GNK D ++V T+ AQ + ++ I FETSAK+ INVE+ F I L
Sbjct: 118 FP--FVVLGNKIDLENRQVA-TKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
Query: 145 RSKKE 149
+ + E
Sbjct: 175 KQETE 179
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 3 IQLFETSAKDNINVEEMFMAITNLVLRSKKE 33
I FETSAK+ INVE+ F I L+ + E
Sbjct: 149 IPYFETSAKEAINVEQAFQTIARNALKQETE 179
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 33.5 bits (75), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRF-ANQMGIQLFETSAKDNINVEEMFMAITNLVL 144
FP ++GNK D ++V T+ AQ + ++ I FETSAK+ INVE+ F I L
Sbjct: 118 FP--FVVLGNKIDLENRQVA-TKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
Query: 145 RSKKE 149
+ + E
Sbjct: 175 KQETE 179
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 3 IQLFETSAKDNINVEEMFMAITNLVLRSKKE 33
I FETSAK+ INVE+ F I L+ + E
Sbjct: 149 IPYFETSAKEAINVEQAFQTIARNALKQETE 179
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK+D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKSD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 92 LVGNKND-DPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137
L GNK D D ++V E A RFA + + ETSA NVEE F+
Sbjct: 120 LCGNKKDLDADREVTFLE-ASRFAQENELMFLETSALTGENVEEAFV 165
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK+D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKSD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRF-ANQMGIQLFETSAKDNINVEEMFMAITNLVL 144
FP ++GNK D ++V T+ AQ + ++ I FETSAK+ INVE+ F I L
Sbjct: 118 FP--FVVLGNKIDLENRQVA-TKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
Query: 145 RSKKE 149
+ + E
Sbjct: 175 KQETE 179
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 3 IQLFETSAKDNINVEEMFMAITNLVLRSKKE 33
I FETSAK+ INVE+ F I L+ + E
Sbjct: 149 IPYFETSAKEAINVEQAFQTIARNALKQETE 179
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 33.1 bits (74), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQ-MGIQLFETSAKDNINVEEMFMAITNLVLR 145
LVGNK D ++VV E Q A Q E+SAK INV E+F + + R
Sbjct: 113 LVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 33.1 bits (74), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSK 147
LVGNK D + V + AQ A GI ETSAK VE+ F + + + K
Sbjct: 113 LVGNKXD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHK 167
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 33.1 bits (74), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQ-MGIQLFETSAKDNINVEEMFMAITNLVLR 145
LVGNK D ++VV E Q A Q E+SAK INV E+F + + R
Sbjct: 113 LVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSK 147
LVGNK D + V + AQ A GI ETSAK VE+ F + + + K
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHK 167
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
L+GNK+D + V T++A+ FA + + ETSA ++ NV++ F
Sbjct: 120 LIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAF 164
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKXD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMF 136
FP ++GNK D +++V TE+AQ + G FETSAKD+ NV F
Sbjct: 121 FP--FVILGNKTDIKERQVS-TEEAQAWCKDNGDYPYFETSAKDSTNVAAAF 169
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVLR 145
LVGNK D ++VV E Q A Q E+SAK INV E+F + + R
Sbjct: 113 LVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVLR 145
LVGNK D ++VV E Q A Q E+SAK INV E+F + + R
Sbjct: 115 LVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 169
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV--LRSKKE 149
LVGNK+D + + V + + A + ETSA NV+E+F I V R KE
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 178
Query: 150 QKERQV 155
+ ER++
Sbjct: 179 KNERRL 184
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSA-KDNINVEEMFMAITNLVLRSKK 148
L LVGNK D + V TE+ ++ A ++ +E SA N+ E+F + V R +
Sbjct: 135 LILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRM 194
Query: 149 EQ 150
Q
Sbjct: 195 VQ 196
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSK 147
LVGNK D + V + AQ A GI ETSAK VE+ F + + + K
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHK 167
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF-MAITNLVLRSKK 148
LVGNK+D + + V E+ + A + + ETSA + N E+F A+ + LR +
Sbjct: 135 LVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGR 192
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSK 147
LVGNK D + V + AQ A GI ETSAK VE+ F + + + K
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHK 167
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSK 147
LVGNK D + V + AQ A GI ETSAK VE+ F + + + K
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHK 167
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF-MAITNLVLR 145
LVGNK+D + + V E+ + A + + ETSA + N E+F A+ + LR
Sbjct: 114 LVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 92 LVGNKND-DPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137
L GNK D D ++V E A RFA + + ETSA +VEE F+
Sbjct: 118 LCGNKKDLDADREVTFLE-ASRFAQENELMFLETSALTGEDVEEAFV 163
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 120 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 166
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 92 LVGNKND-DPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137
L GNK D D ++V E A RFA + + ETSA +VEE F+
Sbjct: 121 LCGNKKDLDADREVTFLE-ASRFAQENELMFLETSALTGEDVEEAFV 166
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF-MAITNLVLR 145
LVGNK+D + + V E+ + A + + ETSA + N E+F A+ + LR
Sbjct: 124 LVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 178
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 118 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 164
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 118 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 164
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 118 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 164
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
LV NK D + E+A+ A ++ ++ + TS K+++NV E+F
Sbjct: 114 LVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 119 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 165
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV--LRSKKE 149
LVGNK+D + + V + + A + ETSA NV+E+F I V R KE
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 178
Query: 150 QKERQV 155
+ ER++
Sbjct: 179 KNERRL 184
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKCD-LAGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVL 144
FP ++GNK D +++V TE+AQ + G FETSAKD NV F VL
Sbjct: 117 FP--FVILGNKIDISERQVS-TEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173
Query: 145 RSK 147
++
Sbjct: 174 ATE 176
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVL 144
FP ++GNK D +++V TE+AQ + G FETSAKD NV F VL
Sbjct: 119 FP--FVILGNKIDISERQVS-TEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 175
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGN+ D + V + AQ A GI ETSAK VE+ F +
Sbjct: 113 LVGNRCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 30.0 bits (66), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
+ LVGNK D ++V+ E+ + A E+SAK+N ++F I
Sbjct: 114 IMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 15/80 (18%)
Query: 82 YCWLFPSGLRLVGNKND---DPQ---------KKVVLTEDAQRFANQMGIQ-LFETSAKD 128
+C P + LVG K D DPQ ++ V +++ Q A+Q+G +E SAK
Sbjct: 111 FCQGVP--IILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKT 168
Query: 129 NINVEEMFMAITNLVLRSKK 148
V E+F A T L K
Sbjct: 169 GYGVREVFEAATRASLMGKS 188
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
+ LVGNK D ++V+ E+ + A E+SAK+N ++F I
Sbjct: 112 IMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 161
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
+ LVGNK D ++V+ E+ + A E+SAK+N ++F I
Sbjct: 114 IMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
+ LVGNK D ++V+ E+ + A E+SAK+N ++F
Sbjct: 109 IMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 155
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human Grlf1
(P190rhogap)
Length = 255
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 109 DAQRFA-NQMGIQLFETSAKDNINVEEMFMAITNLV 143
DA FA ++ +Q+ ETSA+ N+NV+ F + L+
Sbjct: 218 DAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 3 IQLFETSAKDNINVEEMFMAITNLV 27
+Q+ ETSA+ N+NV+ F + L+
Sbjct: 229 LQVVETSARSNVNVDLAFSTLVQLI 253
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK+D + + V + + A + ETSA NV+E+F I V R +++ K
Sbjct: 150 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV-RLRRDSK 208
Query: 152 ER 153
E+
Sbjct: 209 EK 210
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK+D + + V ++ + A + ETSA + NV+ +F + + R +++ K
Sbjct: 116 LVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI-RLRRDSK 174
Query: 152 E 152
E
Sbjct: 175 E 175
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVL 144
FP ++GNK D ++V TE+AQ + + G ETSAKD+ NV F VL
Sbjct: 117 FP--FVVLGNKVDKEDRQVT-TEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
+ LVGNK D + V E+ + A + ETSAK N++ +F
Sbjct: 109 IALVGNKTDLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
LVGNK D ++ V + + + A + G ETSAK V+E+F I
Sbjct: 113 LVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137
L GNK D ++KV F + +Q ++ SAK N N E+ F+
Sbjct: 113 LCGNKVDVKERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFL 156
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137
L GNK D ++KV F + +Q ++ SAK N N E+ F+
Sbjct: 114 LCGNKVDVKERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFL 157
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK+D + + V ++ + A + ETSA + NV+ +F + + R +++ K
Sbjct: 116 LVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI-RLRRDSK 174
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143
LVGNK+D + + V + + A + ETSA NV+E+F I V
Sbjct: 119 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
LVGNK+D + + V ++ + A + ETSA + NV+ +F +
Sbjct: 111 LVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137
L GNK D +KV + F + +Q ++ SAK N N E+ F+
Sbjct: 115 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 158
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136
LVGNK D + + V E+ + A + ETSA NV E+F
Sbjct: 116 LVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKD-NINVEEMFMAITNLV 143
FP + LV NK D + V + + A + I ETSAKD +NV++ F + ++
Sbjct: 124 FP--MILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKD-NINVEEMFMAITNLV 143
FP + LV NK D + V + + A + I ETSAKD +NV++ F + ++
Sbjct: 124 FP--MILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137
L GNK D +KV + F + +Q ++ SAK N N E+ F+
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137
L GNK D +KV + F + +Q ++ SAK N N E+ F+
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137
L GNK D +KV + F + +Q ++ SAK N N E+ F+
Sbjct: 121 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 164
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKD-NINVEEMFMAITNLV 143
FP + LV NK D + V + + A + I ETSAKD +NV++ F + ++
Sbjct: 124 FP--MILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 26.2 bits (56), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137
L GNK D ++KV F + +Q ++ SAK N N E+ F+
Sbjct: 121 LCGNKVDVKERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFL 164
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKD-NINVEEMFMAITNLV 143
FP + LV NK D + V + + A + I ETSAKD +NV++ F + ++
Sbjct: 119 FP--MILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,898,698
Number of Sequences: 62578
Number of extensions: 178109
Number of successful extensions: 752
Number of sequences better than 100.0: 203
Number of HSP's better than 100.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 431
Number of HSP's gapped (non-prelim): 378
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)