BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1416
(177 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5U316|RAB35_RAT Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1
Length = 201
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 69/88 (78%), Gaps = 5/88 (5%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ- 150
LVGNKNDDP++KVV TEDA +FA QMGIQLFETSAK+N+NVEEMF IT LVLR+KK+
Sbjct: 117 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNL 176
Query: 151 -KERQVLNSDTVNIRKHTTKPGGKKKCC 177
K++Q +D V + K++ + KK+CC
Sbjct: 177 AKQQQQQQNDVVKLTKNSKR---KKRCC 201
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 46/63 (73%), Gaps = 5/63 (7%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ--KERQVLNSDTVNIRKHTTKPGGKK 58
MGIQLFETSAK+N+NVEEMF IT LVLR+KK+ K++Q +D V + K++ + KK
Sbjct: 142 MGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLTKNSKR---KK 198
Query: 59 KVC 61
+ C
Sbjct: 199 RCC 201
>sp|Q6PHN9|RAB35_MOUSE Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1
Length = 201
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 69/88 (78%), Gaps = 5/88 (5%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ- 150
LVGNKNDDP++KVV TEDA +FA QMGIQLFETSAK+N+NVEEMF IT LVLR+KK+
Sbjct: 117 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNL 176
Query: 151 -KERQVLNSDTVNIRKHTTKPGGKKKCC 177
K++Q +D V + K++ + KK+CC
Sbjct: 177 AKQQQQQQNDVVKLTKNSKR---KKRCC 201
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 46/63 (73%), Gaps = 5/63 (7%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ--KERQVLNSDTVNIRKHTTKPGGKK 58
MGIQLFETSAK+N+NVEEMF IT LVLR+KK+ K++Q +D V + K++ + KK
Sbjct: 142 MGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLTKNSKR---KK 198
Query: 59 KVC 61
+ C
Sbjct: 199 RCC 201
>sp|Q15286|RAB35_HUMAN Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1
Length = 201
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 69/88 (78%), Gaps = 5/88 (5%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ- 150
LVGNKNDDP++KVV TEDA +FA QMGIQLFETSAK+N+NVEEMF IT LVLR+KK+
Sbjct: 117 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNL 176
Query: 151 -KERQVLNSDTVNIRKHTTKPGGKKKCC 177
K++Q +D V + K++ + KK+CC
Sbjct: 177 AKQQQQQQNDVVKLTKNSKR---KKRCC 201
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 46/63 (73%), Gaps = 5/63 (7%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ--KERQVLNSDTVNIRKHTTKPGGKK 58
MGIQLFETSAK+N+NVEEMF IT LVLR+KK+ K++Q +D V + K++ + KK
Sbjct: 142 MGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLTKNSKR---KK 198
Query: 59 KVC 61
+ C
Sbjct: 199 RCC 201
>sp|Q9FPJ4|RAD2B_ARATH Ras-related protein RABD2b OS=Arabidopsis thaliana GN=RABD2B PE=2
SV=1
Length = 202
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNKND +KVV TE A+ FA+++GI ETSAK+ NVEE FMA+T ++++ +
Sbjct: 118 LVGNKNDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMT-AAIKTRMASQ 176
Query: 152 ERQVLNSDTVNIRKHTTKPGGKKKCC 177
TV IR + CC
Sbjct: 177 PAGGAKPPTVQIRGQPVNQ--QSGCC 200
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLV 27
+GI ETSAK+ NVEE FMA+T +
Sbjct: 143 LGIPFLETSAKNATNVEEAFMAMTAAI 169
>sp|Q05737|YPTM2_MAIZE GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1
Length = 203
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 12/91 (13%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK+D KVV TE A+ FA++MGI ETSAK+ NV++ FMA+ + K
Sbjct: 118 LVGNKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASI-------K 170
Query: 152 ERQVLNSDTVNIRKHTTKPGG-----KKKCC 177
+R N R T + G K CC
Sbjct: 171 DRMASQPAAANARPATVQIRGQPVNQKTSCC 201
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKV 60
MGI ETSAK+ NV++ FMA+ + Q TV IR +P +K
Sbjct: 143 MGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAANARPATVQIRG---QPVNQKTS 199
Query: 61 C 61
C
Sbjct: 200 C 200
>sp|Q5ZIT5|RAB10_CHICK Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1
Length = 200
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
L+GNK D K+VV ++ A + GI+ FETSAK NIN+E+ F+ + +LR K K
Sbjct: 119 LLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILR-KTPVK 177
Query: 152 ERQVLNSDTVNIRKHTTKPGGKKKCC 177
E NS+ V+I G K KCC
Sbjct: 178 EP---NSENVDISSGGGVTGWKSKCC 200
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 2 GIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKVC 61
GI+ FETSAK NIN+E+ F+ + +LR K KE NS+ V+I G K K C
Sbjct: 145 GIRFFETSAKANINIEKAFLTLAEDILR-KTPVKEP---NSENVDISSGGGVTGWKSKCC 200
>sp|Q9SEH3|RAD2C_ARATH Ras-related protein RABD2c OS=Arabidopsis thaliana GN=RABD2C PE=1
SV=1
Length = 202
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 37/52 (71%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143
LVGNK D +KVV TE A+ FA+++GI ETSAK+ NVEE FMA+T +
Sbjct: 118 LVGNKCDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAI 169
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLV 27
+GI ETSAK+ NVEE FMA+T +
Sbjct: 143 LGIPFLETSAKNATNVEEAFMAMTAAI 169
>sp|Q5R5U1|RAB10_PONAB Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1
Length = 200
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
L+GNK D K+VV ++ A + GI+ FETSAK NIN+E+ F+ + +LR K K
Sbjct: 119 LLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILR-KTPVK 177
Query: 152 ERQVLNSDTVNIRKHTTKPGGKKKCC 177
E NS+ V+I G K KCC
Sbjct: 178 EP---NSENVDISSGGGVTGWKSKCC 200
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 2 GIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKVC 61
GI+ FETSAK NIN+E+ F+ + +LR K KE NS+ V+I G K K C
Sbjct: 145 GIRFFETSAKANINIEKAFLTLAEDILR-KTPVKEP---NSENVDISSGGGVTGWKSKCC 200
>sp|P61027|RAB10_MOUSE Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1
Length = 200
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
L+GNK D K+VV ++ A + GI+ FETSAK NIN+E+ F+ + +LR K K
Sbjct: 119 LLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILR-KTPVK 177
Query: 152 ERQVLNSDTVNIRKHTTKPGGKKKCC 177
E NS+ V+I G K KCC
Sbjct: 178 EP---NSENVDISSGGGVTGWKSKCC 200
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 2 GIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKVC 61
GI+ FETSAK NIN+E+ F+ + +LR K KE NS+ V+I G K K C
Sbjct: 145 GIRFFETSAKANINIEKAFLTLAEDILR-KTPVKEP---NSENVDISSGGGVTGWKSKCC 200
>sp|P61026|RAB10_HUMAN Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1
Length = 200
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
L+GNK D K+VV ++ A + GI+ FETSAK NIN+E+ F+ + +LR K K
Sbjct: 119 LLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILR-KTPVK 177
Query: 152 ERQVLNSDTVNIRKHTTKPGGKKKCC 177
E NS+ V+I G K KCC
Sbjct: 178 EP---NSENVDISSGGGVTGWKSKCC 200
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 2 GIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKVC 61
GI+ FETSAK NIN+E+ F+ + +LR K KE NS+ V+I G K K C
Sbjct: 145 GIRFFETSAKANINIEKAFLTLAEDILR-KTPVKEP---NSENVDISSGGGVTGWKSKCC 200
>sp|P34140|RAB1B_DICDI Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B
PE=2 SV=2
Length = 206
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 51/91 (56%), Gaps = 11/91 (12%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK D +KK+V T A+ +A+ +GI ETSAK + NVE+ FM + + + KK Q
Sbjct: 118 LVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEI---KKLQG 174
Query: 152 ERQVLNSDTVNIRKHTTKPGG------KKKC 176
Q N+ T N H KP G KKKC
Sbjct: 175 GIQPNNNSTYN--AHVVKPTGFTPIGKKKKC 203
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPG----- 55
+GI ETSAK + NVE+ FM + + + KK Q Q N+ T N H KP
Sbjct: 143 VGIPFLETSAKSSANVEQAFMIMASEI---KKLQGGIQPNNNSTYN--AHVVKPTGFTPI 197
Query: 56 GKKKVCTVL 64
GKKK C+++
Sbjct: 198 GKKKKCSII 206
>sp|P24409|RAB10_CANFA Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=1 SV=1
Length = 200
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
L+GNK D K+VV ++ A + GI+ FETSAK NIN+E+ F+ + +LR K K
Sbjct: 119 LLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKVNINIEKAFLTLAEDILR-KTPVK 177
Query: 152 ERQVLNSDTVNIRKHTTKPGGKKKCC 177
E NS+ V+I G K KCC
Sbjct: 178 EP---NSENVDISSGGGVTGWKSKCC 200
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 2 GIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKVC 61
GI+ FETSAK NIN+E+ F+ + +LR K KE NS+ V+I G K K C
Sbjct: 145 GIRFFETSAKVNINIEKAFLTLAEDILR-KTPVKEP---NSENVDISSGGGVTGWKSKCC 200
>sp|Q9ZRE2|RABD1_ARATH Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1
SV=1
Length = 205
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 35/49 (71%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
L+GNKND + KVV TE + A+++GI ETSAKD+INVE+ F+ I
Sbjct: 118 LIGNKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIA 166
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 1 MGIQLFETSAKDNINVEEMFMAIT 24
+GI ETSAKD+INVE+ F+ I
Sbjct: 143 LGIPFLETSAKDSINVEQAFLTIA 166
>sp|P59190|RAB15_HUMAN Ras-related protein Rab-15 OS=Homo sapiens GN=RAB15 PE=1 SV=1
Length = 212
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 87 PSGLR--LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVL 144
P G++ L+GNK D+ QK+ V E Q+ A + G+ +ETSA N+N++E F +T LVL
Sbjct: 111 PEGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTELVL 170
Query: 145 RSKKEQKE 152
++ +++ E
Sbjct: 171 QAHRKELE 178
Score = 33.5 bits (75), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 2 GIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKE 36
G+ +ETSA N+N++E F +T LVL++ +++ E
Sbjct: 144 GMDFYETSACTNLNIKESFTRLTELVLQAHRKELE 178
>sp|Q1RMR4|RAB15_BOVIN Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 PE=2 SV=1
Length = 212
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 87 PSGLR--LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVL 144
P G++ L+GNK D+ QK+ V E Q+ A + G+ +ETSA N+N++E F +T LVL
Sbjct: 111 PEGVQKILIGNKADEEQKRQVGREQGQQLAREYGMDFYETSACTNLNIKESFTRLTELVL 170
Query: 145 RSKKEQKE 152
++ +++ E
Sbjct: 171 QAHRKELE 178
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKE 36
G+ +ETSA N+N++E F +T LVL++ +++ E
Sbjct: 143 YGMDFYETSACTNLNIKESFTRLTELVLQAHRKELE 178
>sp|Q96E17|RAB3C_HUMAN Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1
Length = 227
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK D ++V+ TE Q Q+G + FETSAKDNINV++ F + +++ E
Sbjct: 140 LVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESL 199
Query: 152 ERQ-VLNSDTVNIRKHTTKPGGKKKCC 177
E + + N R T P + C
Sbjct: 200 ETDPAITAAKQNTRLKETPPPPQPNCA 226
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQ-VLNSDTVNIRKHTTKP 54
+G + FETSAKDNINV++ F + +++ E E + + N R T P
Sbjct: 165 LGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQNTRLKETPP 219
>sp|P28188|RAD2A_ARATH Ras-related protein RABD2a OS=Arabidopsis thaliana GN=RABD2A PE=1
SV=3
Length = 203
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK+D + + + E A+ FA+++GI ETSAKD NVE+ FMA++ + Q
Sbjct: 118 LVGNKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQP 177
Query: 152 ERQVLNSDTVNIRKHTTKPGGKKKCC 177
TV IR K CC
Sbjct: 178 AGNNARPPTVQIRGQPV--AQKNGCC 201
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKV 60
+GI ETSAKD NVE+ FMA++ + Q TV IR +P +K
Sbjct: 143 IGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGNNARPPTVQIRG---QPVAQKNG 199
Query: 61 C 61
C
Sbjct: 200 C 200
>sp|P10949|RAB3C_BOVIN Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3
Length = 227
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK D ++V+ TE Q Q+G + FETSAKDNINV++ F + +++ E
Sbjct: 140 LVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESL 199
Query: 152 ERQ-VLNSDTVNIRKHTTKPGGKKKC 176
E + + N R T P + C
Sbjct: 200 ETDPAITAAKQNTRLKETPPPPQPNC 225
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQ-VLNSDTVNIRKHTTKP 54
+G + FETSAKDNINV++ F + +++ E E + + N R T P
Sbjct: 165 LGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQNTRLKETPP 219
>sp|P35289|RAB15_RAT Ras-related protein Rab-15 OS=Rattus norvegicus GN=Rab15 PE=2 SV=1
Length = 212
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 87 PSGLR--LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVL 144
P G++ L+GNK D+ QK+ V E Q+ A + G+ +ETSA N+N++E F +T LVL
Sbjct: 111 PEGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTELVL 170
Query: 145 RSKKEQ 150
++ +++
Sbjct: 171 QAHRKE 176
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 34
G+ +ETSA N+N++E F +T LVL++ +++
Sbjct: 143 YGMDFYETSACTNLNIKESFTRLTELVLQAHRKE 176
>sp|Q8K386|RAB15_MOUSE Ras-related protein Rab-15 OS=Mus musculus GN=Rab15 PE=1 SV=1
Length = 212
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 87 PSGLR--LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVL 144
P G++ L+GNK D+ QK+ V E Q+ A + G+ +ETSA N+N++E F +T LVL
Sbjct: 111 PEGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTELVL 170
Query: 145 RSKKEQ 150
++ +++
Sbjct: 171 QAHRKE 176
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 34
G+ +ETSA N+N++E F +T LVL++ +++
Sbjct: 143 YGMDFYETSACTNLNIKESFTRLTELVLQAHRKE 176
>sp|Q39433|RB1BV_BETVU Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1
Length = 215
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 92 LVGNKND-DPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 150
LVGNK D D K+ V T Q A++ GI+ FETSAK N+NVEE+F +I + + +
Sbjct: 125 LVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADS 184
Query: 151 KERQVLNSDTVNIR---KHTTKPGGKKKCC 177
RQ ++ I+ + + K CC
Sbjct: 185 DTRQEAQP-SITIKPADQSGNQAAAKSACC 213
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQ 38
GI+ FETSAK N+NVEE+F +I + + + RQ
Sbjct: 151 YGIKFFETSAKTNLNVEEVFFSIARDIKQRLADSDTRQ 188
>sp|P20790|RAB8A_DICDI Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A
PE=3 SV=1
Length = 208
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 18/94 (19%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
L+GNK D +KKVV + + A++ GI+ ETSAK++INVEE F+++ K+ K
Sbjct: 125 LIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLA-------KDIK 177
Query: 152 ERQVLNSDTVNIRKHTTKPGG--------KKKCC 177
+R + DT N + +PG KK CC
Sbjct: 178 KRMI---DTPNEQPQVVQPGTNLGANNNKKKACC 208
Score = 37.0 bits (84), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 17/67 (25%)
Query: 2 GIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPG------ 55
GI+ ETSAK++INVEE F+++ K+ K+R + DT N + +PG
Sbjct: 151 GIKFLETSAKNSINVEEAFISLA-------KDIKKRMI---DTPNEQPQVVQPGTNLGAN 200
Query: 56 -GKKKVC 61
KKK C
Sbjct: 201 NNKKKAC 207
>sp|P62824|RAB3C_RAT Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1
Length = 227
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
L GNK D ++VV TE QR Q+G + FETSAKDNINV++ F + +++ E
Sbjct: 140 LAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESL 199
Query: 152 ERQ-VLNSDTVNIRKHTTKPGGKKKC 176
E + + + R T P + C
Sbjct: 200 ETDPAITAAKQSTRLKETPPPPQPNC 225
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLV 27
+G + FETSAKDNINV++ F + +++
Sbjct: 165 LGFEFFETSAKDNINVKQTFERLVDII 191
>sp|P62823|RAB3C_MOUSE Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1
Length = 227
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
L GNK D ++VV TE QR Q+G + FETSAKDNINV++ F + +++ E
Sbjct: 140 LAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESL 199
Query: 152 ERQ-VLNSDTVNIRKHTTKPGGKKKC 176
E + + + R T P + C
Sbjct: 200 ETDPAITAAKQSTRLKETPPPPQPNC 225
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLV 27
+G + FETSAKDNINV++ F + +++
Sbjct: 165 LGFEFFETSAKDNINVKQTFERLVDII 191
>sp|P16976|YPTM1_MAIZE GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2
Length = 208
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSK 147
LVGNK D + + V T AQ +A ++GI ETSAK++INVEE F+A++ + +SK
Sbjct: 118 LVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKKSK 173
Score = 37.0 bits (84), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSK 31
+GI ETSAK++INVEE F+A++ + +SK
Sbjct: 143 VGIPFLETSAKESINVEEAFLAMSAAIKKSK 173
>sp|P22127|RAB10_DIPOM Ras-related protein Rab-10 OS=Diplobatis ommata PE=2 SV=1
Length = 200
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
L+GNK D K+VVL ++ A + I+ FETSAK NIN+E+ F+ + +L +
Sbjct: 119 LLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSAKANINIEKAFLTLAEDIL------Q 172
Query: 152 ERQVLNSDTVNIRKHTTKPG-GKKKCC 177
+ V D N+ TT G G KKCC
Sbjct: 173 KTPVKEPDRENVDISTTGGGTGLKKCC 199
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 2 GIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPG-GKKKV 60
I+ FETSAK NIN+E+ F+ + +L ++ V D N+ TT G G KK
Sbjct: 145 AIRFFETSAKANINIEKAFLTLAEDIL------QKTPVKEPDRENVDISTTGGGTGLKKC 198
Query: 61 CT 62
C+
Sbjct: 199 CS 200
>sp|Q54NU2|RAB1D_DICDI Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D
PE=1 SV=1
Length = 204
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK D +KVV + A+ FA GI ETSAK+ NVEE F+++ + + +
Sbjct: 120 LVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKNRLADIQ 179
Query: 152 ERQVLNSDTVNIR-KHTTKPGGKKKCC 177
E D V+I+ K+ TK GGKK C
Sbjct: 180 ETP--KPDEVDIKSKNKTKSGGKKSFC 204
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIR-KHTTKPGGKKK 59
GI ETSAK+ NVEE F+++ + + +E D V+I+ K+ TK GGKK
Sbjct: 145 YGIPFIETSAKNATNVEECFISMARDIKNRLADIQETP--KPDEVDIKSKNKTKSGGKKS 202
Query: 60 VC 61
C
Sbjct: 203 FC 204
>sp|O04486|RAA2A_ARATH Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2
SV=1
Length = 217
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR--SKKE 149
L+GNK D + V TEDAQ +A + G+ ETSA + +NVE+ F I + V R SKK
Sbjct: 122 LIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKS 181
Query: 150 QKERQ------VLNSDTVNIRKHTTKPGGKKKCC 177
Q + T+++ T++ KK CC
Sbjct: 182 ISSDQTTANANIKEGQTIDV-AATSESNAKKPCC 214
>sp|Q01890|YPT1_PHYIN Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1
PE=3 SV=1
Length = 201
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK+D K+VV T+ A+ FA +GI+ ETSAK+ NVE+ FM + + KK
Sbjct: 118 LVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQI---KKRMA 174
Query: 152 ERQVLNSDTVNIRKHTTKPG-GKKKCC 177
V V + P G KCC
Sbjct: 175 NAPVAPKAGVKLTPGQQVPSNGGSKCC 201
>sp|Q63942|RAB3D_RAT GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2
Length = 219
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK D ++VV ED QR A +G + FE SAK+NINV+++F + +++ E
Sbjct: 132 LVGNKCDLEDERVVSAEDGQRLAGDLGFEFFEASAKENINVKQVFERLVDIICDKMNESL 191
Query: 152 E 152
E
Sbjct: 192 E 192
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKE 36
+G + FE SAK+NINV+++F + +++ E E
Sbjct: 157 LGFEFFEASAKENINVKQVFERLVDIICDKMNESLE 192
>sp|P28186|RAE1C_ARATH Ras-related protein RABE1c OS=Arabidopsis thaliana GN=RABE1C PE=1
SV=1
Length = 216
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 92 LVGNKND-DPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139
LVGNK D D K+ V T Q A++ GI+ FETSAK N+NVEE+F +I
Sbjct: 125 LVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 1 MGIQLFETSAKDNINVEEMFMAI 23
GI+ FETSAK N+NVEE+F +I
Sbjct: 151 YGIKFFETSAKTNLNVEEVFFSI 173
>sp|Q9LZD4|RAE1D_ARATH Ras-related protein RABE1d OS=Arabidopsis thaliana GN=RABE1D PE=1
SV=1
Length = 216
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 92 LVGNKND-DPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
LVGNK D D K+ V T Q A++ GI+ FETSAK N+NVE +FM+I
Sbjct: 125 LVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVENVFMSIA 174
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 2 GIQLFETSAKDNINVEEMFMAIT 24
GI+ FETSAK N+NVE +FM+I
Sbjct: 152 GIKFFETSAKTNLNVENVFMSIA 174
>sp|P20791|RAB8B_DICDI Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B
PE=2 SV=1
Length = 203
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 12/88 (13%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
L+GNK D +KKVV + + A++ GI+ ETSAK+++NVEE F+ + K+ K
Sbjct: 125 LIGNKCDMTEKKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLA-------KDIK 177
Query: 152 ERQVLNSDTVNIRKHT--TKPGGKKKCC 177
+R + DT N HT P KK C
Sbjct: 178 KRMI---DTPNDPDHTICITPNNKKNTC 202
Score = 36.6 bits (83), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 12/62 (19%)
Query: 2 GIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHT--TKPGGKKK 59
GI+ ETSAK+++NVEE F+ + K+ K+R + DT N HT P KK
Sbjct: 151 GIKFLETSAKNSVNVEEAFIGLA-------KDIKKRMI---DTPNDPDHTICITPNNKKN 200
Query: 60 VC 61
C
Sbjct: 201 TC 202
>sp|O95716|RAB3D_HUMAN Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1
Length = 219
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK D ++VV ED +R A+ +G + FE SAK+NINV+++F + +++ E
Sbjct: 132 LVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESL 191
Query: 152 E 152
E
Sbjct: 192 E 192
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKE 36
+G + FE SAK+NINV+++F + +++ E E
Sbjct: 157 LGFEFFEASAKENINVKQVFERLVDVICEKMNESLE 192
>sp|P35276|RAB3D_MOUSE Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1
Length = 219
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK D ++VV ED +R A+ +G + FE SAK+NINV+++F + +++ E
Sbjct: 132 LVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDIICDKMNESL 191
Query: 152 E 152
E
Sbjct: 192 E 192
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKE 36
+G + FE SAK+NINV+++F + +++ E E
Sbjct: 157 LGFEFFEASAKENINVKQVFERLVDIICDKMNESLE 192
>sp|O24466|RAE1A_ARATH Ras-related protein RABE1a OS=Arabidopsis thaliana GN=RABE1A PE=1
SV=1
Length = 216
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 92 LVGNKND-DPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV---LRSK 147
LVGNK D D K+ V Q A++ G++ FETSAK N+NVEE+F +I + L
Sbjct: 125 LVGNKADMDESKRAVPKSKGQALADEYGMKFFETSAKTNLNVEEVFFSIAKDIKQRLADT 184
Query: 148 KEQKERQVLNSDTVNIRKHTTKPGGKKKCC 177
+ E Q + + + T++ K CC
Sbjct: 185 DARAEPQTIKINQSDQGAGTSQATQKSACC 214
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 2 GIQLFETSAKDNINVEEMFMAI 23
G++ FETSAK N+NVEE+F +I
Sbjct: 152 GMKFFETSAKTNLNVEEVFFSI 173
>sp|P41924|RYL1_YARLI Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=RYL1 PE=3 SV=1
Length = 203
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 149
L LVGNK D +K+VV TE Q A++ GI E S+K NINVEE F ++ + + +
Sbjct: 119 LILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRIRDTVAK 178
Query: 150 QKERQVLNSDTVNIRKHTTKPGGKKKCC 177
K + S +NI + + KCC
Sbjct: 179 TKGNES-GSGGINIAEG--EENSASKCC 203
>sp|P57735|RAB25_HUMAN Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2
Length = 213
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK+D Q + V TE+A+ FA G+ ETSA D+ NVE F + + +Q+
Sbjct: 122 LVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQR 181
Query: 152 ERQV-LNSDTVNIRKHTTKPG-GKKKCC 177
+ + N+ T+ + +PG G+K+ C
Sbjct: 182 QNSIRTNAITLGSAQAGQEPGPGEKRAC 209
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 2 GIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQV-LNSDTVNIRKHTTKPG-GKKK 59
G+ ETSA D+ NVE F + + +Q++ + N+ T+ + +PG G+K+
Sbjct: 148 GLLFLETSALDSTNVELAFETVLKEIFAKVSKQRQNSIRTNAITLGSAQAGQEPGPGEKR 207
Query: 60 VC 61
C
Sbjct: 208 AC 209
>sp|Q92928|RAB1C_HUMAN Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5
SV=2
Length = 201
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK+D KKVV A+ FA+ +GI ETSAK+ NVE+ FM + + KK+
Sbjct: 118 LVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI---KKQMG 174
Query: 152 ERQVLNSDTVNIRKHTT--KPGGKKKCC 177
+ N++ +T KP G CC
Sbjct: 175 PGAASGGERPNLKIDSTPVKPAG-GGCC 201
>sp|Q54FL2|RABG2_DICDI Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3
SV=2
Length = 197
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK D +K+V T A+ +A+ +GI E SA +NVEE FMA+ N + R+
Sbjct: 116 LVGNKCDLEDRKLVNTSIAREYADSLGIPFMEASAATGVNVEEAFMAMANEIYRNHMGGS 175
Query: 152 ERQVLN 157
+ V+N
Sbjct: 176 KPSVVN 181
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLN 41
+GI E SA +NVEE FMA+ N + R+ + V+N
Sbjct: 141 LGIPFMEASAATGVNVEEAFMAMANEIYRNHMGGSKPSVVN 181
>sp|Q96AX2|RAB37_HUMAN Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3
Length = 223
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
L+GNK D ++V+ +ED + A + G+ ETSAK +NVE F+AI KE K
Sbjct: 140 LLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIA-------KELK 192
Query: 152 ERQVLNSD--TVNIRKHTTKPGGKKKCC 177
R +D + IR + + CC
Sbjct: 193 YRAGHQADEPSFQIRDYVESQKKRSSCC 220
>sp|O93856|RAS_LACBI Ras-like protein OS=Laccaria bicolor PE=2 SV=1
Length = 209
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
FP + +VGNK D +++VV ++ + A Q G + ETSAK INVE F + + R
Sbjct: 114 FP--IIVVGNKCDLDKERVVSKQEGESLARQFGCKFIETSAKSRINVENAFYDLVREIRR 171
Query: 146 SKKEQKERQVLNSDTVNIRKHTTKPGGKKKCC 177
KE + + + ++PG CC
Sbjct: 172 YNKEMSNPSGFGARAPDSKMDVSEPGESAGCC 203
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 25/61 (40%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKV 60
G + ETSAK INVE F + + R KE + + + ++PG
Sbjct: 143 FGCKFIETSAKSRINVENAFYDLVREIRRYNKEMSNPSGFGARAPDSKMDVSEPGESAGC 202
Query: 61 C 61
C
Sbjct: 203 C 203
>sp|P36861|YPTV2_VOLCA GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1
Length = 217
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 92 LVGNKNDDPQ-KKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVL-RSKKE 149
LVGNK D + K+VV Q A++ G + +ETSAKDN++VEE F+A+ VL R + E
Sbjct: 123 LVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAKDVLARMEGE 182
Query: 150 QKERQVLN------SDTVNIRKHTTKPGGKKKCC 177
+Q+L + V + + P K CC
Sbjct: 183 HANQQLLQQQQLSAAQPVRLTSGSPSPAQGKSCC 216
Score = 37.7 bits (86), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVL 28
G + +ETSAKDN++VEE F+A+ VL
Sbjct: 149 FGFRFYETSAKDNVHVEEAFIAVAKDVL 176
>sp|Q9SF91|RAE1E_ARATH Ras-related protein RABE1e OS=Arabidopsis thaliana GN=RABE1E PE=1
SV=1
Length = 218
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 92 LVGNKND-DPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
LVGNK D D K+ V T Q A++ GI+ FETSAK N NVE++F++I
Sbjct: 125 LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNQNVEQVFLSIA 174
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 1 MGIQLFETSAKDNINVEEMFMAIT 24
GI+ FETSAK N NVE++F++I
Sbjct: 151 YGIKFFETSAKTNQNVEQVFLSIA 174
>sp|Q4R8X3|RAB1B_MACFA Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2
SV=1
Length = 201
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK+D KKVV A+ FA+ +GI ETSAK+ NVE+ FM + + KK
Sbjct: 118 LVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI---KKRMG 174
Query: 152 ERQVLNSDTVNIRKHTT--KPGGKKKCC 177
+ N++ +T KP G CC
Sbjct: 175 PGAASGGERPNLKIDSTPVKPAG-GGCC 201
>sp|Q5RE13|RAB1B_PONAB Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1
Length = 201
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK+D KKVV A+ FA+ +GI ETSAK+ NVE+ FM + + KK
Sbjct: 118 LVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI---KKRMG 174
Query: 152 ERQVLNSDTVNIRKHTT--KPGGKKKCC 177
+ N++ +T KP G CC
Sbjct: 175 PGAASGGERPNLKIDSTPVKPAG-GGCC 201
>sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1
Length = 201
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK+D KKVV A+ FA+ +GI ETSAK+ NVE+ FM + + KK
Sbjct: 118 LVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI---KKRMG 174
Query: 152 ERQVLNSDTVNIRKHTT--KPGGKKKCC 177
+ N++ +T KP G CC
Sbjct: 175 PGAASGGERPNLKIDSTPVKPAG-GGCC 201
>sp|P51156|RAB26_RAT Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2
Length = 257
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 149
L L+GNK D Q++VV ED ++ A + G+ ETSAK +NV+ F AI KE
Sbjct: 173 LMLLGNKVDSTQERVVKREDGEKLAKEYGLPFMETSAKSGLNVDLAFTAIA-------KE 225
Query: 150 QKERQVLNSDTVNIRKH--TTKPGGKKKCC 177
K+R R H + G CC
Sbjct: 226 LKQRSTKAPSEPRFRLHDYVKREGRGVSCC 255
>sp|Q5ZHW4|RAB5B_CHICK Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1
Length = 215
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 149
+ L GNK D K++V E+AQ +A+ + ETSAK +NV ++F+AI + +S+ +
Sbjct: 128 IALAGNKADLASKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQ 187
Query: 150 QKERQVLNSDTVNIRKHTTKPGGKKKCC 177
S V++ + T + K +CC
Sbjct: 188 STSGAAGRSRGVDLHEQTQQ--NKSQCC 213
>sp|Q9JKM7|RAB37_MOUSE Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2
Length = 223
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
L+GNK D ++V+ +ED + A + G+ ETSAK +NVE F+AI KE K
Sbjct: 140 LLGNKADVSSERVIRSEDGETLAREYGVPFMETSAKTGMNVELAFLAIA-------KELK 192
Query: 152 ERQVLNSD--TVNIRKHTTKPGGKKKCC 177
R D + IR + + CC
Sbjct: 193 YRAGRQPDEPSFQIRDYVESQKKRSSCC 220
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,502,602
Number of Sequences: 539616
Number of extensions: 2436838
Number of successful extensions: 7953
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 124
Number of HSP's that attempted gapping in prelim test: 6982
Number of HSP's gapped (non-prelim): 1119
length of query: 177
length of database: 191,569,459
effective HSP length: 110
effective length of query: 67
effective length of database: 132,211,699
effective search space: 8858183833
effective search space used: 8858183833
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)