Query psy1416
Match_columns 177
No_of_seqs 354 out of 2874
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 20:58:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 99.9 6.2E-24 1.3E-28 155.3 8.1 115 60-177 88-204 (205)
2 KOG0078|consensus 99.9 1.4E-23 3E-28 155.3 9.1 88 60-149 91-179 (207)
3 KOG0092|consensus 99.9 1E-23 2.2E-28 153.7 6.3 115 60-177 84-199 (200)
4 KOG0098|consensus 99.9 3.8E-23 8.3E-28 149.9 7.0 92 60-153 85-177 (216)
5 KOG0091|consensus 99.9 2.1E-22 4.6E-27 143.3 8.4 92 60-151 88-180 (213)
6 KOG0079|consensus 99.9 2E-22 4.3E-27 141.3 7.0 111 60-177 87-198 (198)
7 KOG0094|consensus 99.9 8.3E-22 1.8E-26 144.0 6.4 88 60-148 101-189 (221)
8 KOG0088|consensus 99.9 1.1E-21 2.3E-26 139.1 6.4 88 60-149 92-180 (218)
9 KOG0093|consensus 99.8 1E-21 2.3E-26 137.5 5.5 88 60-149 100-188 (193)
10 cd04126 Rab20 Rab20 subfamily. 99.8 1.1E-20 2.3E-25 144.4 10.7 113 60-177 74-220 (220)
11 KOG0087|consensus 99.8 8.5E-21 1.8E-25 140.3 9.2 90 60-151 93-183 (222)
12 KOG0080|consensus 99.8 3.5E-21 7.6E-26 136.8 5.0 115 60-177 90-207 (209)
13 KOG0081|consensus 99.8 8.7E-20 1.9E-24 129.5 8.9 91 61-152 98-189 (219)
14 KOG0394|consensus 99.8 1.8E-19 4E-24 130.6 9.3 107 61-167 89-201 (210)
15 cd04120 Rab12 Rab12 subfamily. 99.8 2.3E-19 5E-24 135.4 9.5 86 60-147 79-166 (202)
16 KOG0083|consensus 99.8 3.4E-20 7.4E-25 128.1 2.8 86 60-147 77-163 (192)
17 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 9E-19 2E-23 131.8 10.5 118 60-177 80-201 (201)
18 KOG0086|consensus 99.8 1.5E-19 3.3E-24 127.5 5.7 100 60-161 88-188 (214)
19 cd04121 Rab40 Rab40 subfamily. 99.8 4.5E-19 9.8E-24 132.6 8.2 85 60-147 85-170 (189)
20 KOG0097|consensus 99.8 6.5E-19 1.4E-23 123.0 8.0 90 60-151 90-180 (215)
21 PTZ00099 rab6; Provisional 99.8 1.9E-18 4.1E-23 127.8 7.2 85 60-146 59-144 (176)
22 cd01873 RhoBTB RhoBTB subfamil 99.8 1.8E-18 3.8E-23 130.0 7.0 80 60-142 94-194 (195)
23 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 4.1E-18 8.8E-23 131.1 9.0 85 60-147 91-191 (232)
24 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 2.4E-18 5.1E-23 127.9 6.9 82 60-144 83-180 (182)
25 cd04133 Rop_like Rop subfamily 99.7 3.2E-18 6.8E-23 126.6 7.0 82 60-144 79-173 (176)
26 cd04144 Ras2 Ras2 subfamily. 99.7 2E-17 4.3E-22 123.5 9.5 90 60-149 77-168 (190)
27 cd04131 Rnd Rnd subfamily. Th 99.7 7.5E-18 1.6E-22 124.8 6.8 82 60-144 79-176 (178)
28 PLN03110 Rab GTPase; Provision 99.7 3.3E-17 7.1E-22 124.9 9.7 87 60-148 91-178 (216)
29 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 1.9E-17 4E-22 121.9 8.0 86 60-146 80-166 (172)
30 cd04112 Rab26 Rab26 subfamily. 99.7 4E-17 8.7E-22 121.9 9.7 111 60-177 80-191 (191)
31 cd04110 Rab35 Rab35 subfamily. 99.7 3.6E-17 7.8E-22 123.0 9.4 114 60-177 85-199 (199)
32 KOG0395|consensus 99.7 2.3E-17 4.9E-22 123.9 7.7 86 60-146 81-167 (196)
33 cd04103 Centaurin_gamma Centau 99.7 1.4E-17 3E-22 121.0 6.4 82 60-142 72-157 (158)
34 PF00071 Ras: Ras family; Int 99.7 5.5E-17 1.2E-21 117.4 8.3 83 60-144 78-161 (162)
35 cd04111 Rab39 Rab39 subfamily. 99.7 1.7E-16 3.8E-21 120.5 10.0 89 60-149 82-171 (211)
36 cd04109 Rab28 Rab28 subfamily. 99.7 1.3E-16 2.8E-21 121.4 9.2 87 60-146 80-168 (215)
37 cd04122 Rab14 Rab14 subfamily. 99.7 1.1E-16 2.4E-21 116.6 8.3 84 60-145 81-165 (166)
38 cd01875 RhoG RhoG subfamily. 99.7 8.1E-17 1.7E-21 120.4 7.7 83 60-145 81-178 (191)
39 PLN03108 Rab family protein; P 99.7 2.8E-16 6.1E-21 119.2 10.3 87 60-148 85-172 (210)
40 cd04134 Rho3 Rho3 subfamily. 99.7 1.6E-16 3.4E-21 118.6 8.3 83 60-145 78-175 (189)
41 cd04117 Rab15 Rab15 subfamily. 99.7 1.5E-16 3.2E-21 115.6 7.5 81 60-142 79-160 (161)
42 cd04127 Rab27A Rab27a subfamil 99.7 1.9E-16 4.2E-21 116.6 8.2 86 60-146 93-179 (180)
43 PTZ00369 Ras-like protein; Pro 99.7 2.2E-16 4.9E-21 117.7 8.1 87 60-147 83-170 (189)
44 cd04125 RabA_like RabA-like su 99.7 4.1E-16 9E-21 116.0 9.1 86 60-147 79-165 (188)
45 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 3.5E-16 7.6E-21 119.7 8.3 85 60-147 79-179 (222)
46 cd01874 Cdc42 Cdc42 subfamily. 99.6 3E-16 6.5E-21 115.8 6.7 81 60-143 79-174 (175)
47 cd04146 RERG_RasL11_like RERG/ 99.6 8.1E-16 1.8E-20 111.8 7.4 85 60-144 78-164 (165)
48 smart00176 RAN Ran (Ras-relate 99.6 1E-15 2.2E-20 115.4 7.7 82 60-146 74-156 (200)
49 cd04142 RRP22 RRP22 subfamily. 99.6 1.1E-15 2.4E-20 115.0 7.6 88 60-147 87-177 (198)
50 cd04132 Rho4_like Rho4-like su 99.6 2.2E-15 4.7E-20 111.8 8.8 87 60-149 79-172 (187)
51 cd04140 ARHI_like ARHI subfami 99.6 1.5E-15 3.2E-20 110.6 7.6 82 60-141 79-162 (165)
52 cd01867 Rab8_Rab10_Rab13_like 99.6 2.1E-15 4.5E-20 110.1 8.2 84 60-145 82-166 (167)
53 KOG0095|consensus 99.6 3E-16 6.4E-21 110.6 3.4 88 60-149 86-174 (213)
54 PLN03118 Rab family protein; P 99.6 5.7E-15 1.2E-19 112.0 10.5 86 60-146 92-179 (211)
55 cd01865 Rab3 Rab3 subfamily. 99.6 2.6E-15 5.6E-20 109.3 8.2 84 60-145 80-164 (165)
56 cd01871 Rac1_like Rac1-like su 99.6 1.3E-15 2.8E-20 112.3 6.6 80 60-142 79-173 (174)
57 cd04129 Rho2 Rho2 subfamily. 99.6 2.3E-15 5E-20 112.0 7.6 84 60-146 79-175 (187)
58 cd04118 Rab24 Rab24 subfamily. 99.6 7.5E-15 1.6E-19 109.5 10.0 85 60-147 80-169 (193)
59 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 4E-15 8.6E-20 108.2 7.9 83 60-144 81-164 (166)
60 cd04136 Rap_like Rap-like subf 99.6 3.6E-15 7.7E-20 107.8 7.5 83 60-143 79-162 (163)
61 cd04175 Rap1 Rap1 subgroup. T 99.6 3.9E-15 8.5E-20 108.0 7.4 83 60-143 79-162 (164)
62 smart00174 RHO Rho (Ras homolo 99.6 2.6E-15 5.7E-20 109.9 6.2 82 60-144 76-172 (174)
63 cd04128 Spg1 Spg1p. Spg1p (se 99.6 4.4E-15 9.5E-20 110.3 7.2 84 60-146 79-168 (182)
64 cd04148 RGK RGK subfamily. Th 99.6 6.6E-15 1.4E-19 112.6 8.1 87 60-147 79-166 (221)
65 cd04119 RJL RJL (RabJ-Like) su 99.6 7.2E-15 1.6E-19 106.4 7.6 85 60-144 79-167 (168)
66 PLN03071 GTP-binding nuclear p 99.6 5.7E-15 1.2E-19 112.8 7.2 83 60-147 92-175 (219)
67 cd04176 Rap2 Rap2 subgroup. T 99.6 7.7E-15 1.7E-19 106.3 7.3 83 60-143 79-162 (163)
68 cd04115 Rab33B_Rab33A Rab33B/R 99.6 9.6E-15 2.1E-19 106.9 7.6 83 60-143 82-168 (170)
69 cd01866 Rab2 Rab2 subfamily. 99.6 1.4E-14 3.1E-19 105.8 8.2 84 60-145 83-167 (168)
70 cd04145 M_R_Ras_like M-Ras/R-R 99.6 1.6E-14 3.4E-19 104.5 7.8 83 60-143 80-163 (164)
71 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 1.8E-14 3.9E-19 105.8 8.2 85 60-145 79-166 (170)
72 smart00173 RAS Ras subfamily o 99.6 1.6E-14 3.5E-19 104.6 7.8 84 60-144 78-162 (164)
73 cd01868 Rab11_like Rab11-like. 99.5 2.5E-14 5.4E-19 103.8 8.0 82 60-143 82-164 (165)
74 cd04106 Rab23_lke Rab23-like s 99.5 2.3E-14 4.9E-19 103.6 7.3 80 60-142 81-161 (162)
75 cd04116 Rab9 Rab9 subfamily. 99.5 3E-14 6.5E-19 104.0 7.4 82 60-142 84-169 (170)
76 cd01864 Rab19 Rab19 subfamily. 99.5 3.4E-14 7.5E-19 103.2 7.5 81 60-142 82-164 (165)
77 cd00877 Ran Ran (Ras-related n 99.5 3.2E-14 6.9E-19 104.0 7.2 81 60-145 79-160 (166)
78 cd04113 Rab4 Rab4 subfamily. 99.5 4.2E-14 9.1E-19 102.2 7.1 82 60-143 79-161 (161)
79 cd04138 H_N_K_Ras_like H-Ras/N 99.5 6.7E-14 1.5E-18 100.7 7.8 82 60-143 79-161 (162)
80 cd04135 Tc10 TC10 subfamily. 99.5 4.7E-14 1E-18 103.2 6.9 81 60-143 78-173 (174)
81 KOG0393|consensus 99.5 2.4E-14 5.1E-19 106.4 5.2 84 60-146 83-181 (198)
82 cd04101 RabL4 RabL4 (Rab-like4 99.5 8E-14 1.7E-18 101.0 7.9 81 60-143 82-163 (164)
83 cd04177 RSR1 RSR1 subgroup. R 99.5 8.2E-14 1.8E-18 101.7 7.9 84 60-144 79-164 (168)
84 cd04130 Wrch_1 Wrch-1 subfamil 99.5 7.9E-14 1.7E-18 102.3 7.1 79 60-141 78-171 (173)
85 cd04143 Rhes_like Rhes_like su 99.5 1.4E-13 3.1E-18 106.9 8.0 84 60-143 78-170 (247)
86 smart00175 RAB Rab subfamily o 99.5 2.9E-13 6.2E-18 97.8 7.9 84 60-145 79-163 (164)
87 cd04139 RalA_RalB RalA/RalB su 99.4 4E-13 8.8E-18 96.9 7.9 84 60-144 78-162 (164)
88 cd04124 RabL2 RabL2 subfamily. 99.4 6.3E-13 1.4E-17 96.4 7.1 81 60-146 79-160 (161)
89 cd04114 Rab30 Rab30 subfamily. 99.4 8.3E-13 1.8E-17 96.1 7.6 82 60-143 86-168 (169)
90 cd01861 Rab6 Rab6 subfamily. 99.4 8.2E-13 1.8E-17 95.3 7.3 81 60-142 79-160 (161)
91 cd04123 Rab21 Rab21 subfamily. 99.4 1E-12 2.2E-17 94.5 7.4 82 60-143 79-161 (162)
92 cd01860 Rab5_related Rab5-rela 99.4 1.5E-12 3.3E-17 94.0 8.0 82 60-143 80-162 (163)
93 cd01870 RhoA_like RhoA-like su 99.4 1.2E-12 2.5E-17 95.9 7.4 81 60-143 79-174 (175)
94 cd01863 Rab18 Rab18 subfamily. 99.4 1.5E-12 3.1E-17 94.1 7.5 81 60-142 79-160 (161)
95 cd01892 Miro2 Miro2 subfamily. 99.4 8.2E-13 1.8E-17 96.8 5.8 81 60-144 84-166 (169)
96 cd04158 ARD1 ARD1 subfamily. 99.4 1.6E-12 3.4E-17 95.1 6.5 84 60-146 73-163 (169)
97 cd04137 RheB Rheb (Ras Homolog 99.3 5.9E-12 1.3E-16 92.7 8.1 86 60-146 79-165 (180)
98 cd01862 Rab7 Rab7 subfamily. 99.3 7.4E-12 1.6E-16 91.1 8.3 87 60-146 79-169 (172)
99 cd00876 Ras Ras family. The R 99.3 5.7E-12 1.2E-16 90.4 7.3 82 60-142 77-159 (160)
100 cd01893 Miro1 Miro1 subfamily. 99.3 3.2E-12 6.9E-17 93.1 5.7 83 60-145 77-165 (166)
101 cd04149 Arf6 Arf6 subfamily. 99.3 3.5E-12 7.5E-17 93.4 5.4 79 60-141 83-167 (168)
102 cd04162 Arl9_Arfrp2_like Arl9/ 99.3 1.6E-12 3.4E-17 94.8 2.4 79 60-141 74-163 (164)
103 KOG4252|consensus 99.3 5.2E-12 1.1E-16 91.8 4.8 89 60-151 99-188 (246)
104 cd00157 Rho Rho (Ras homology) 99.3 9.5E-12 2.1E-16 90.5 6.2 79 60-141 78-170 (171)
105 cd04147 Ras_dva Ras-dva subfam 99.3 2.3E-11 5E-16 91.3 7.9 84 60-144 77-163 (198)
106 TIGR02528 EutP ethanolamine ut 99.3 2E-11 4.4E-16 86.5 7.1 72 60-140 69-141 (142)
107 PLN00223 ADP-ribosylation fact 99.2 2.3E-11 4.9E-16 90.2 6.7 81 60-146 91-180 (181)
108 cd04154 Arl2 Arl2 subfamily. 99.2 1.7E-11 3.8E-16 89.8 5.6 79 60-141 88-172 (173)
109 PTZ00133 ADP-ribosylation fact 99.2 6.7E-12 1.5E-16 93.1 3.0 85 60-147 91-181 (182)
110 cd04150 Arf1_5_like Arf1-Arf5- 99.2 5.8E-12 1.3E-16 91.3 2.2 79 60-141 74-158 (159)
111 cd00154 Rab Rab family. Rab G 99.2 5.1E-11 1.1E-15 84.8 6.9 79 60-140 79-158 (159)
112 smart00177 ARF ARF-like small 99.2 9E-12 1.9E-16 91.8 2.9 81 60-143 87-173 (175)
113 PTZ00132 GTP-binding nuclear p 99.2 6.7E-11 1.4E-15 89.8 7.8 82 60-146 88-170 (215)
114 TIGR00157 ribosome small subun 99.2 2.1E-11 4.5E-16 94.7 5.0 76 60-141 43-120 (245)
115 PRK12299 obgE GTPase CgtA; Rev 99.1 1.1E-10 2.4E-15 94.4 7.3 86 60-145 243-329 (335)
116 cd00879 Sar1 Sar1 subfamily. 99.1 7.9E-11 1.7E-15 87.5 5.5 80 60-142 93-189 (190)
117 cd01898 Obg Obg subfamily. Th 99.1 1.3E-10 2.8E-15 84.4 5.3 82 60-142 85-169 (170)
118 cd01897 NOG NOG1 is a nucleola 99.1 1.4E-10 3E-15 84.2 5.4 78 61-143 87-167 (168)
119 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.1 3.5E-10 7.7E-15 83.8 7.6 87 60-149 82-175 (183)
120 cd04157 Arl6 Arl6 subfamily. 99.1 6.7E-11 1.4E-15 85.2 3.1 80 60-141 75-161 (162)
121 cd04156 ARLTS1 ARLTS1 subfamil 99.1 1.3E-10 2.7E-15 83.8 3.5 79 60-141 74-159 (160)
122 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.0 5.1E-10 1.1E-14 82.2 5.4 79 60-141 89-173 (174)
123 cd00878 Arf_Arl Arf (ADP-ribos 99.0 3E-10 6.4E-15 81.7 3.9 79 60-141 73-157 (158)
124 cd04102 RabL3 RabL3 (Rab-like3 99.0 5.2E-10 1.1E-14 84.5 5.1 72 60-131 84-177 (202)
125 cd04151 Arl1 Arl1 subfamily. 99.0 2.2E-10 4.9E-15 82.6 2.6 79 60-141 73-157 (158)
126 cd04160 Arfrp1 Arfrp1 subfamil 99.0 9.3E-10 2E-14 79.8 5.2 79 60-141 80-166 (167)
127 cd04161 Arl2l1_Arl13_like Arl2 99.0 3.3E-10 7.2E-15 82.7 2.5 81 60-141 73-166 (167)
128 PRK15467 ethanolamine utilizat 98.9 3.6E-09 7.7E-14 76.8 7.5 77 60-146 71-149 (158)
129 KOG3883|consensus 98.9 2.6E-09 5.7E-14 75.9 5.7 81 61-145 92-176 (198)
130 TIGR02729 Obg_CgtA Obg family 98.9 3.4E-09 7.3E-14 85.7 6.5 82 61-143 243-328 (329)
131 cd01890 LepA LepA subfamily. 98.9 4.9E-09 1.1E-13 76.9 6.6 76 60-143 97-176 (179)
132 KOG4423|consensus 98.9 4.3E-09 9.3E-14 77.1 5.3 87 60-146 105-196 (229)
133 PRK04213 GTP-binding protein; 98.8 1.1E-08 2.3E-13 76.7 6.6 80 61-145 95-193 (201)
134 cd01878 HflX HflX subfamily. 98.8 6.4E-09 1.4E-13 78.2 4.8 76 60-142 127-203 (204)
135 KOG0078|consensus 98.8 9.4E-09 2E-13 76.7 5.3 33 1-33 147-179 (207)
136 KOG0096|consensus 98.8 1.8E-09 3.9E-14 79.3 1.3 80 61-145 90-170 (216)
137 KOG0091|consensus 98.8 1.3E-08 2.9E-13 73.1 5.5 33 1-33 146-178 (213)
138 cd04155 Arl3 Arl3 subfamily. 98.7 2.1E-08 4.5E-13 73.1 6.0 76 60-141 88-172 (173)
139 PLN00023 GTP-binding protein; 98.7 1.9E-08 4.1E-13 80.6 5.9 88 60-147 113-233 (334)
140 KOG0084|consensus 98.7 1.7E-08 3.6E-13 74.6 4.5 34 1-34 144-178 (205)
141 cd01881 Obg_like The Obg-like 98.7 1.2E-08 2.6E-13 74.3 3.6 83 60-142 81-175 (176)
142 cd01879 FeoB Ferrous iron tran 98.7 4.4E-08 9.4E-13 70.1 6.4 55 87-142 101-155 (158)
143 cd04159 Arl10_like Arl10-like 98.7 1.3E-08 2.7E-13 72.4 3.3 79 60-141 74-158 (159)
144 smart00178 SAR Sar1p-like memb 98.7 3E-08 6.4E-13 73.6 5.4 80 60-142 91-183 (184)
145 KOG0092|consensus 98.7 1.4E-08 3.1E-13 74.7 3.3 30 2-31 141-170 (200)
146 PRK12297 obgE GTPase CgtA; Rev 98.7 1E-07 2.3E-12 79.3 8.0 82 61-146 244-329 (424)
147 cd04171 SelB SelB subfamily. 98.6 4.9E-08 1.1E-12 70.1 5.4 54 88-141 105-163 (164)
148 KOG0394|consensus 98.6 7.4E-08 1.6E-12 70.5 5.5 32 2-33 152-183 (210)
149 PRK03003 GTP-binding protein D 98.6 4.9E-08 1.1E-12 82.6 5.1 81 61-146 301-384 (472)
150 COG1100 GTPase SAR1 and relate 98.6 2.9E-07 6.3E-12 69.6 7.7 87 60-148 84-189 (219)
151 KOG0083|consensus 98.6 5.4E-08 1.2E-12 67.8 3.2 31 1-31 133-163 (192)
152 KOG1707|consensus 98.5 5.9E-08 1.3E-12 81.9 2.4 86 60-145 86-176 (625)
153 cd00882 Ras_like_GTPase Ras-li 98.5 4.4E-07 9.6E-12 63.1 6.4 80 60-140 75-156 (157)
154 TIGR00437 feoB ferrous iron tr 98.5 2.6E-07 5.6E-12 80.2 5.8 57 86-143 98-154 (591)
155 TIGR00231 small_GTP small GTP- 98.5 5.1E-07 1.1E-11 63.6 6.1 76 61-139 81-159 (161)
156 cd01894 EngA1 EngA1 subfamily. 98.4 3.5E-07 7.5E-12 65.1 5.2 51 87-142 105-156 (157)
157 TIGR00450 mnmE_trmE_thdF tRNA 98.4 4.2E-07 9E-12 76.3 6.4 74 60-146 289-362 (442)
158 PRK15494 era GTPase Era; Provi 98.4 4.4E-07 9.6E-12 73.7 6.3 74 63-144 139-216 (339)
159 TIGR03156 GTP_HflX GTP-binding 98.4 3.9E-07 8.5E-12 74.3 4.8 75 60-142 275-350 (351)
160 cd01895 EngA2 EngA2 subfamily. 98.4 1E-06 2.2E-11 63.5 6.5 77 61-142 92-173 (174)
161 PRK12298 obgE GTPase CgtA; Rev 98.4 1E-06 2.2E-11 72.9 7.0 84 61-145 245-334 (390)
162 KOG0097|consensus 98.4 5.8E-07 1.3E-11 63.3 4.5 34 1-34 146-179 (215)
163 KOG0098|consensus 98.3 4.7E-07 1E-11 66.6 3.7 34 1-34 141-174 (216)
164 cd04164 trmE TrmE (MnmE, ThdF, 98.3 8.3E-07 1.8E-11 63.1 5.0 68 61-143 88-156 (157)
165 PRK05291 trmE tRNA modificatio 98.3 6.5E-07 1.4E-11 75.4 4.9 69 61-145 302-371 (449)
166 PRK00098 GTPase RsgA; Reviewed 98.3 6.6E-07 1.4E-11 71.5 4.5 76 60-141 87-164 (298)
167 PRK12288 GTPase RsgA; Reviewed 98.3 1.2E-06 2.7E-11 71.3 6.1 78 60-142 127-206 (347)
168 cd01887 IF2_eIF5B IF2/eIF5B (i 98.3 1.4E-06 3.1E-11 62.9 5.5 57 87-143 102-165 (168)
169 TIGR03594 GTPase_EngA ribosome 98.3 1.7E-06 3.7E-11 72.2 6.7 58 87-145 283-345 (429)
170 PRK12296 obgE GTPase CgtA; Rev 98.3 1.5E-06 3.1E-11 73.7 6.2 60 86-146 283-342 (500)
171 cd01854 YjeQ_engC YjeQ/EngC. 98.3 1E-06 2.2E-11 70.0 4.8 75 60-141 85-161 (287)
172 PRK11058 GTPase HflX; Provisio 98.3 1.7E-06 3.6E-11 72.4 6.2 79 60-145 283-363 (426)
173 PF00025 Arf: ADP-ribosylation 98.3 3.8E-06 8.2E-11 61.9 7.4 80 61-143 89-175 (175)
174 cd01896 DRG The developmentall 98.3 2.3E-06 5.1E-11 66.0 6.3 51 86-143 175-225 (233)
175 KOG1673|consensus 98.2 1.2E-06 2.5E-11 62.7 3.9 84 60-146 99-188 (205)
176 KOG0080|consensus 98.2 1.1E-06 2.4E-11 63.2 3.8 30 1-30 147-176 (209)
177 cd01855 YqeH YqeH. YqeH is an 98.2 4.9E-06 1.1E-10 61.9 7.5 57 87-144 61-125 (190)
178 TIGR00436 era GTP-binding prot 98.2 2.8E-06 6E-11 66.9 5.8 57 87-144 107-164 (270)
179 cd01888 eIF2_gamma eIF2-gamma 98.2 2.1E-06 4.5E-11 64.8 4.8 56 88-143 138-198 (203)
180 PRK03003 GTP-binding protein D 98.2 1.8E-06 3.9E-11 73.2 4.8 76 61-145 125-200 (472)
181 PRK12289 GTPase RsgA; Reviewed 98.2 2.1E-06 4.5E-11 70.1 5.0 76 60-142 96-173 (352)
182 TIGR03597 GTPase_YqeH ribosome 98.2 6.3E-06 1.4E-10 67.5 7.5 65 74-142 80-151 (360)
183 TIGR01393 lepA GTP-binding pro 98.2 4.8E-06 1E-10 72.4 6.7 76 61-144 101-180 (595)
184 cd00881 GTP_translation_factor 98.1 4.7E-06 1E-10 61.1 5.3 58 86-143 113-186 (189)
185 TIGR00475 selB selenocysteine- 98.1 4.1E-06 8.9E-11 72.7 5.5 76 61-144 81-166 (581)
186 TIGR00073 hypB hydrogenase acc 98.1 6.8E-06 1.5E-10 62.2 5.8 55 88-142 149-205 (207)
187 cd01889 SelB_euk SelB subfamil 98.1 4.9E-06 1.1E-10 62.0 4.9 58 87-144 120-186 (192)
188 TIGR00101 ureG urease accessor 98.1 8.8E-06 1.9E-10 61.3 6.1 53 91-143 141-195 (199)
189 cd04163 Era Era subfamily. Er 98.0 1E-05 2.2E-10 57.6 5.3 56 87-142 111-167 (168)
190 PRK00454 engB GTP-binding prot 98.0 1.2E-05 2.6E-10 59.7 5.7 57 87-143 135-193 (196)
191 cd00880 Era_like Era (E. coli 98.0 7.9E-06 1.7E-10 57.4 4.5 57 86-142 103-162 (163)
192 smart00010 small_GTPase Small 98.0 2.2E-06 4.8E-11 58.7 0.9 63 60-133 53-115 (124)
193 cd01859 MJ1464 MJ1464. This f 98.0 1.4E-05 3E-10 57.5 4.9 56 87-144 41-96 (156)
194 PRK13796 GTPase YqeH; Provisio 97.9 3.3E-05 7.1E-10 63.5 7.3 65 74-142 86-157 (365)
195 PRK00089 era GTPase Era; Revie 97.9 2.3E-05 4.9E-10 62.3 6.1 58 87-144 113-171 (292)
196 KOG0094|consensus 97.9 8.7E-06 1.9E-10 60.4 3.3 31 1-31 158-188 (221)
197 KOG0086|consensus 97.9 1.2E-05 2.6E-10 57.5 3.7 32 2-33 145-176 (214)
198 PF02421 FeoB_N: Ferrous iron 97.9 5.7E-06 1.2E-10 59.9 2.1 52 87-139 105-156 (156)
199 KOG0081|consensus 97.9 1.9E-05 4.2E-10 56.8 4.7 36 1-36 154-189 (219)
200 TIGR00487 IF-2 translation ini 97.9 2.9E-05 6.2E-10 67.4 6.7 53 86-141 186-247 (587)
201 PRK09518 bifunctional cytidyla 97.9 2.2E-05 4.8E-10 69.7 5.8 78 61-145 540-622 (712)
202 cd04120 Rab12 Rab12 subfamily. 97.9 2.1E-05 4.5E-10 59.4 4.6 30 2-31 137-166 (202)
203 PRK00093 GTP-binding protein D 97.9 2.3E-05 5E-10 65.6 5.1 58 87-145 284-345 (435)
204 PRK04000 translation initiatio 97.8 3.3E-05 7.1E-10 64.5 5.3 57 88-144 140-201 (411)
205 KOG0087|consensus 97.8 4.1E-05 8.8E-10 57.4 5.2 33 2-34 150-182 (222)
206 KOG0088|consensus 97.8 3.6E-05 7.8E-10 55.4 4.5 30 2-31 149-178 (218)
207 cd01876 YihA_EngB The YihA (En 97.8 3.7E-05 7.9E-10 54.9 4.5 56 87-142 110-169 (170)
208 cd04107 Rab32_Rab38 Rab38/Rab3 97.8 6.3E-05 1.4E-09 56.4 5.8 30 3-32 143-172 (201)
209 PRK05306 infB translation init 97.8 4.1E-05 8.9E-10 68.4 5.2 56 86-141 388-449 (787)
210 PRK05433 GTP-binding protein L 97.7 9.2E-05 2E-09 64.6 7.1 57 87-145 126-185 (600)
211 CHL00189 infB translation init 97.7 9.1E-05 2E-09 65.7 6.8 55 86-143 346-409 (742)
212 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.7 3.7E-05 8.1E-10 59.3 3.9 31 1-31 159-191 (232)
213 cd04111 Rab39 Rab39 subfamily. 97.7 7.8E-05 1.7E-09 56.5 5.4 32 1-32 139-170 (211)
214 PRK00093 GTP-binding protein D 97.7 7.1E-05 1.5E-09 62.7 5.6 50 87-141 109-159 (435)
215 cd01891 TypA_BipA TypA (tyrosi 97.7 7.3E-05 1.6E-09 55.7 4.9 49 87-135 117-173 (194)
216 TIGR03598 GTPase_YsxC ribosome 97.7 3.7E-05 7.9E-10 56.6 3.1 47 87-133 129-179 (179)
217 PRK10512 selenocysteinyl-tRNA- 97.7 8E-05 1.7E-09 65.1 5.6 56 88-143 104-165 (614)
218 PF08477 Miro: Miro-like prote 97.7 2.5E-05 5.5E-10 53.2 2.0 39 60-98 80-119 (119)
219 TIGR00483 EF-1_alpha translati 97.6 5.2E-05 1.1E-09 63.5 4.1 77 60-137 115-200 (426)
220 PRK09554 feoB ferrous iron tra 97.6 0.00014 3E-09 65.1 6.6 56 87-143 112-167 (772)
221 smart00176 RAN Ran (Ras-relate 97.6 8.6E-05 1.9E-09 56.0 4.0 29 2-30 128-156 (200)
222 PLN03118 Rab family protein; P 97.6 0.00019 4.2E-09 54.2 5.9 29 2-30 151-179 (211)
223 TIGR03680 eif2g_arch translati 97.6 0.00012 2.5E-09 61.1 4.9 57 88-144 135-196 (406)
224 PLN03108 Rab family protein; P 97.6 0.00019 4E-09 54.4 5.6 32 1-32 141-172 (210)
225 PTZ00099 rab6; Provisional 97.5 6E-05 1.3E-09 55.6 2.8 29 2-30 116-144 (176)
226 KOG0395|consensus 97.5 8.9E-05 1.9E-09 55.7 3.7 30 1-30 138-167 (196)
227 PF10662 PduV-EutP: Ethanolami 97.5 0.00037 8E-09 49.7 6.6 52 87-139 89-141 (143)
228 PLN03110 Rab GTPase; Provision 97.5 0.00022 4.9E-09 54.2 5.7 31 1-31 147-177 (216)
229 cd01849 YlqF_related_GTPase Yl 97.5 0.00023 4.9E-09 51.3 5.4 57 87-144 29-85 (155)
230 TIGR03594 GTPase_EngA ribosome 97.5 0.00022 4.8E-09 59.5 6.1 54 87-145 107-161 (429)
231 PF00009 GTP_EFTU: Elongation 97.5 0.00018 3.9E-09 53.4 4.9 58 87-144 122-187 (188)
232 KOG0073|consensus 97.5 0.00051 1.1E-08 49.7 6.6 84 60-146 90-180 (185)
233 cd04110 Rab35 Rab35 subfamily. 97.4 0.00024 5.3E-09 53.1 5.0 31 2-32 141-171 (199)
234 PLN03071 GTP-binding nuclear p 97.4 0.00015 3.2E-09 55.3 3.8 29 2-30 146-174 (219)
235 KOG0095|consensus 97.4 5.3E-05 1.1E-09 54.0 0.7 31 2-32 143-173 (213)
236 PRK09518 bifunctional cytidyla 97.4 0.00037 8.1E-09 62.1 6.2 56 86-145 382-437 (712)
237 cd01856 YlqF YlqF. Proteins o 97.2 0.00087 1.9E-08 49.0 5.8 56 87-144 46-101 (171)
238 cd01858 NGP_1 NGP-1. Autoanti 97.2 0.00064 1.4E-08 48.9 4.6 51 87-142 39-93 (157)
239 cd01857 HSR1_MMR1 HSR1/MMR1. 97.2 0.00061 1.3E-08 48.2 4.4 43 87-131 42-84 (141)
240 COG0378 HypB Ni2+-binding GTPa 97.2 0.00083 1.8E-08 50.1 5.1 52 91-142 146-199 (202)
241 TIGR00491 aIF-2 translation in 97.1 0.00024 5.2E-09 61.8 1.9 63 61-141 100-165 (590)
242 KOG3905|consensus 97.1 0.0016 3.5E-08 52.3 6.1 60 87-146 222-292 (473)
243 PRK14845 translation initiatio 97.0 0.002 4.4E-08 59.3 7.1 24 119-142 648-671 (1049)
244 cd04109 Rab28 Rab28 subfamily. 97.0 0.00086 1.9E-08 50.8 4.0 30 1-30 139-168 (215)
245 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.0 0.00091 2E-08 51.3 3.7 29 2-30 148-178 (222)
246 COG0532 InfB Translation initi 97.0 0.0028 6.1E-08 53.7 6.9 55 86-143 106-169 (509)
247 KOG1489|consensus 96.9 0.0018 3.9E-08 51.8 5.3 52 86-140 311-363 (366)
248 PRK10463 hydrogenase nickel in 96.9 0.0025 5.4E-08 50.7 5.7 54 88-141 231-286 (290)
249 cd04165 GTPBP1_like GTPBP1-lik 96.9 0.003 6.6E-08 48.4 5.9 54 87-140 138-219 (224)
250 PRK12317 elongation factor 1-a 96.8 0.00088 1.9E-08 56.1 3.0 50 88-137 140-198 (425)
251 COG0481 LepA Membrane GTPase L 96.8 0.0034 7.3E-08 52.9 6.2 57 86-145 127-187 (603)
252 TIGR03596 GTPase_YlqF ribosome 96.8 0.0039 8.5E-08 49.3 6.4 58 87-146 48-105 (276)
253 PRK09866 hypothetical protein; 96.8 0.0055 1.2E-07 53.7 7.3 54 88-141 290-350 (741)
254 COG0536 Obg Predicted GTPase [ 96.8 0.0035 7.5E-08 50.6 5.6 61 86-147 274-336 (369)
255 cd04148 RGK RGK subfamily. Th 96.7 0.0019 4.1E-08 49.3 4.0 28 2-29 137-164 (221)
256 cd04166 CysN_ATPS CysN_ATPS su 96.7 0.0019 4.2E-08 48.7 3.7 48 88-135 131-185 (208)
257 COG2262 HflX GTPases [General 96.7 0.0053 1.1E-07 50.7 6.2 56 86-146 303-358 (411)
258 TIGR01394 TypA_BipA GTP-bindin 96.7 0.003 6.6E-08 55.1 5.1 58 87-144 116-191 (594)
259 PRK01889 GTPase RsgA; Reviewed 96.7 0.0031 6.7E-08 51.7 4.9 51 87-140 142-193 (356)
260 COG4917 EutP Ethanolamine util 96.6 0.0075 1.6E-07 42.0 5.7 51 89-141 92-143 (148)
261 PRK04004 translation initiatio 96.6 0.0014 3.1E-08 57.1 2.6 50 87-146 123-172 (586)
262 KOG0462|consensus 96.6 0.0038 8.3E-08 53.3 5.0 56 86-144 176-235 (650)
263 KOG0070|consensus 96.6 0.0031 6.6E-08 46.5 3.9 59 85-145 116-179 (181)
264 PTZ00327 eukaryotic translatio 96.6 0.0038 8.3E-08 52.9 5.0 55 89-143 173-232 (460)
265 PRK13768 GTPase; Provisional 96.5 0.0061 1.3E-07 47.6 5.6 55 87-143 162-246 (253)
266 PRK09563 rbgA GTPase YlqF; Rev 96.5 0.0086 1.9E-07 47.6 6.3 58 87-146 51-108 (287)
267 KOG0076|consensus 96.5 0.0018 3.9E-08 47.4 2.1 61 86-146 125-189 (197)
268 cd01883 EF1_alpha Eukaryotic e 96.5 0.0018 4E-08 49.3 2.3 46 88-133 138-194 (219)
269 TIGR00750 lao LAO/AO transport 96.5 0.0029 6.2E-08 50.6 3.5 57 87-143 172-237 (300)
270 PTZ00132 GTP-binding nuclear p 96.5 0.0037 8.1E-08 47.2 3.9 28 2-29 142-169 (215)
271 COG1162 Predicted GTPases [Gen 96.4 0.0096 2.1E-07 47.5 5.8 58 86-143 109-166 (301)
272 KOG4423|consensus 96.3 0.0047 1E-07 45.8 3.6 28 4-31 170-197 (229)
273 cd04147 Ras_dva Ras-dva subfam 96.3 0.0055 1.2E-07 45.7 4.0 27 2-28 137-163 (198)
274 COG1159 Era GTPase [General fu 96.2 0.0085 1.8E-07 47.5 4.8 59 87-145 114-173 (298)
275 PRK12736 elongation factor Tu; 96.2 0.0095 2.1E-07 49.5 5.3 44 87-130 127-179 (394)
276 KOG0072|consensus 96.2 0.004 8.6E-08 44.4 2.5 58 86-145 118-180 (182)
277 COG1160 Predicted GTPases [Gen 96.2 0.017 3.8E-07 48.2 6.5 58 87-144 289-351 (444)
278 COG0486 ThdF Predicted GTPase 96.1 0.014 3E-07 49.0 5.4 56 86-146 323-378 (454)
279 KOG0075|consensus 96.0 0.0052 1.1E-07 43.9 2.4 52 86-142 121-180 (186)
280 cd04143 Rhes_like Rhes_like su 96.0 0.0082 1.8E-07 46.7 3.8 26 2-27 145-170 (247)
281 COG2229 Predicted GTPase [Gene 96.0 0.029 6.4E-07 41.4 6.2 53 88-142 122-176 (187)
282 PLN00043 elongation factor 1-a 96.0 0.01 2.2E-07 50.2 4.3 48 87-134 144-203 (447)
283 COG0370 FeoB Fe2+ transport sy 95.8 0.012 2.5E-07 51.5 4.0 57 87-144 108-164 (653)
284 TIGR00485 EF-Tu translation el 95.8 0.017 3.8E-07 47.9 4.9 44 87-130 127-179 (394)
285 PRK09435 membrane ATPase/prote 95.7 0.022 4.7E-07 46.3 5.1 55 90-144 197-260 (332)
286 cd01884 EF_Tu EF-Tu subfamily. 95.5 0.043 9.3E-07 41.1 5.7 47 87-133 117-172 (195)
287 cd04104 p47_IIGP_like p47 (47- 95.2 0.063 1.4E-06 40.1 5.8 63 87-149 107-189 (197)
288 KOG1145|consensus 95.1 0.1 2.2E-06 45.0 7.3 54 86-142 252-314 (683)
289 PF05783 DLIC: Dynein light in 95.1 0.042 9E-07 46.8 5.1 61 87-147 196-267 (472)
290 COG1163 DRG Predicted GTPase [ 95.0 0.082 1.8E-06 42.7 6.2 50 87-143 239-288 (365)
291 PRK05124 cysN sulfate adenylyl 95.0 0.02 4.4E-07 48.7 3.0 48 88-135 161-216 (474)
292 COG5257 GCD11 Translation init 94.9 0.028 6.1E-07 45.3 3.3 57 89-145 142-203 (415)
293 PRK12735 elongation factor Tu; 94.7 0.05 1.1E-06 45.2 4.6 45 87-131 127-180 (396)
294 COG0218 Predicted GTPase [Gene 94.7 0.08 1.7E-06 39.8 5.1 57 87-144 135-197 (200)
295 KOG1707|consensus 94.5 0.068 1.5E-06 46.1 4.7 79 61-144 503-583 (625)
296 KOG0705|consensus 94.4 0.069 1.5E-06 46.0 4.7 87 61-148 103-193 (749)
297 TIGR02034 CysN sulfate adenyly 94.4 0.044 9.5E-07 45.8 3.5 47 89-135 135-188 (406)
298 cd01899 Ygr210 Ygr210 subfamil 94.4 0.041 8.9E-07 44.5 3.2 54 87-144 214-269 (318)
299 KOG1532|consensus 94.4 0.23 5.1E-06 39.4 7.1 60 86-145 180-265 (366)
300 PRK10218 GTP-binding protein; 94.3 0.11 2.5E-06 45.6 5.9 58 87-144 120-195 (607)
301 TIGR00157 ribosome small subun 94.2 0.036 7.8E-07 43.1 2.5 26 1-26 96-121 (245)
302 COG1160 Predicted GTPases [Gen 94.2 0.11 2.4E-06 43.6 5.3 53 87-144 112-165 (444)
303 KOG1490|consensus 94.0 0.24 5.2E-06 42.3 7.1 64 87-150 281-347 (620)
304 cd04167 Snu114p Snu114p subfam 93.5 0.072 1.6E-06 40.2 3.0 14 87-100 123-136 (213)
305 KOG1423|consensus 93.1 0.17 3.7E-06 40.7 4.6 25 120-144 247-271 (379)
306 COG2895 CysN GTPases - Sulfate 93.1 0.12 2.5E-06 42.4 3.6 46 89-134 141-193 (431)
307 PRK05506 bifunctional sulfate 92.9 0.1 2.3E-06 46.0 3.4 47 88-134 158-211 (632)
308 KOG4252|consensus 92.8 0.071 1.5E-06 39.5 1.8 33 2-34 155-187 (246)
309 cd04105 SR_beta Signal recogni 92.7 0.14 3.1E-06 38.4 3.5 42 61-102 80-124 (203)
310 PRK09602 translation-associate 92.3 0.18 3.8E-06 42.1 3.9 45 87-135 217-261 (396)
311 COG1703 ArgK Putative periplas 92.2 0.26 5.7E-06 39.4 4.5 55 90-144 192-254 (323)
312 TIGR00437 feoB ferrous iron tr 91.5 0.21 4.6E-06 43.8 3.6 27 1-27 128-154 (591)
313 KOG0071|consensus 91.5 0.51 1.1E-05 33.7 4.8 55 86-142 117-176 (180)
314 PF03308 ArgK: ArgK protein; 91.3 0.19 4E-06 39.5 2.7 54 89-143 169-229 (266)
315 PF03029 ATP_bind_1: Conserved 91.1 0.12 2.7E-06 40.0 1.6 56 87-142 156-235 (238)
316 CHL00071 tufA elongation facto 90.9 0.23 5E-06 41.5 3.2 46 87-132 127-181 (409)
317 PTZ00141 elongation factor 1- 89.6 0.54 1.2E-05 39.8 4.4 48 87-134 144-203 (446)
318 cd04168 TetM_like Tet(M)-like 89.4 1.6 3.4E-05 33.7 6.4 25 119-143 210-234 (237)
319 PRK15494 era GTPase Era; Provi 88.9 0.38 8.2E-06 39.2 2.8 25 3-27 191-215 (339)
320 KOG0466|consensus 88.6 0.42 9E-06 38.6 2.8 57 89-145 181-242 (466)
321 cd01885 EF2 EF2 (for archaea a 88.4 0.71 1.5E-05 35.3 3.9 25 87-111 125-150 (222)
322 COG5258 GTPBP1 GTPase [General 88.1 1.2 2.6E-05 37.1 5.1 17 119-135 314-330 (527)
323 PRK00049 elongation factor Tu; 88.0 1.4 2.9E-05 36.8 5.6 45 87-131 127-180 (396)
324 cd00066 G-alpha G protein alph 87.9 1 2.2E-05 36.4 4.7 62 86-147 227-314 (317)
325 COG1084 Predicted GTPase [Gene 87.7 0.85 1.8E-05 37.0 4.0 58 87-146 280-338 (346)
326 PLN03126 Elongation factor Tu; 87.2 0.69 1.5E-05 39.6 3.5 46 87-132 196-250 (478)
327 cd04178 Nucleostemin_like Nucl 87.1 0.9 1.9E-05 33.3 3.7 15 87-101 30-44 (172)
328 COG3276 SelB Selenocysteine-sp 87.1 0.98 2.1E-05 38.0 4.2 56 89-144 105-162 (447)
329 cd01850 CDC_Septin CDC/Septin. 86.9 0.61 1.3E-05 36.9 2.8 41 87-127 143-185 (276)
330 PLN03127 Elongation factor Tu; 86.8 1.4 3E-05 37.5 5.0 56 87-142 176-250 (447)
331 KOG0461|consensus 86.6 1.7 3.7E-05 35.8 5.1 56 89-144 124-193 (522)
332 cd01855 YqeH YqeH. YqeH is an 86.3 0.93 2E-05 33.4 3.4 24 4-27 101-124 (190)
333 PRK12297 obgE GTPase CgtA; Rev 86.1 1.1 2.4E-05 37.8 4.1 26 3-28 302-327 (424)
334 PRK04000 translation initiatio 85.9 0.77 1.7E-05 38.5 3.1 26 2-27 175-200 (411)
335 PRK12740 elongation factor G; 85.1 2.9 6.2E-05 37.3 6.4 27 119-145 237-263 (668)
336 cd01859 MJ1464 MJ1464. This f 84.9 1.3 2.9E-05 31.3 3.6 27 2-28 70-96 (156)
337 TIGR00436 era GTP-binding prot 84.3 0.98 2.1E-05 35.4 2.8 24 4-27 140-163 (270)
338 PRK12296 obgE GTPase CgtA; Rev 84.0 1.4 3E-05 38.0 3.8 28 2-29 314-341 (500)
339 PRK00741 prfC peptide chain re 83.9 4.2 9.2E-05 35.3 6.7 27 119-145 249-275 (526)
340 COG5256 TEF1 Translation elong 83.8 1.2 2.6E-05 37.2 3.2 47 89-135 147-202 (428)
341 KOG4273|consensus 83.7 2 4.4E-05 33.8 4.2 80 60-143 85-221 (418)
342 TIGR03680 eif2g_arch translati 83.7 1.1 2.5E-05 37.3 3.1 26 2-27 170-195 (406)
343 PRK13351 elongation factor G; 83.5 3.3 7.1E-05 37.1 6.1 27 119-145 253-279 (687)
344 PRK11058 GTPase HflX; Provisio 83.4 1.4 3.1E-05 37.1 3.6 24 5-28 339-362 (426)
345 TIGR01393 lepA GTP-binding pro 83.4 1 2.2E-05 39.6 2.8 25 4-28 156-180 (595)
346 PRK05291 trmE tRNA modificatio 83.4 1.3 2.8E-05 37.6 3.4 27 2-28 344-370 (449)
347 TIGR00450 mnmE_trmE_thdF tRNA 83.3 1.4 3.1E-05 37.3 3.6 28 2-30 335-362 (442)
348 KOG0096|consensus 82.7 0.76 1.6E-05 34.4 1.5 27 2-28 143-169 (216)
349 TIGR00487 IF-2 translation ini 82.6 1.1 2.5E-05 39.3 2.8 23 3-25 225-247 (587)
350 PF06858 NOG1: Nucleolar GTP-b 82.2 1.1 2.3E-05 26.8 1.8 13 86-98 46-58 (58)
351 KOG1144|consensus 81.8 4.3 9.4E-05 36.7 5.9 29 121-149 664-692 (1064)
352 TIGR00475 selB selenocysteine- 81.5 1.4 3.1E-05 38.6 3.1 27 2-28 140-166 (581)
353 smart00275 G_alpha G protein a 81.4 4.9 0.00011 32.9 5.9 62 86-147 250-337 (342)
354 TIGR02836 spore_IV_A stage IV 81.2 3.4 7.4E-05 35.0 4.9 66 68-140 164-233 (492)
355 COG1100 GTPase SAR1 and relate 80.3 2.6 5.7E-05 31.4 3.8 28 4-31 159-188 (219)
356 PRK12288 GTPase RsgA; Reviewed 79.3 1.7 3.7E-05 35.6 2.6 26 2-27 182-207 (347)
357 COG0481 LepA Membrane GTPase L 78.6 1.7 3.6E-05 37.3 2.3 24 5-28 163-186 (603)
358 TIGR03597 GTPase_YqeH ribosome 78.2 2.7 5.9E-05 34.6 3.5 22 4-25 129-150 (360)
359 CHL00189 infB translation init 78.1 2 4.4E-05 38.8 2.9 24 3-26 385-408 (742)
360 PRK05306 infB translation init 78.0 1.8 3.9E-05 39.4 2.6 23 3-25 427-449 (787)
361 KOG0090|consensus 77.7 2.4 5.1E-05 32.5 2.7 22 119-141 215-236 (238)
362 COG1161 Predicted GTPases [Gen 76.4 5.6 0.00012 32.2 4.8 48 88-136 62-109 (322)
363 KOG1191|consensus 75.8 2.7 5.8E-05 36.0 2.9 58 88-146 390-452 (531)
364 KOG0082|consensus 75.8 7.3 0.00016 32.1 5.3 62 86-147 261-347 (354)
365 PRK00098 GTPase RsgA; Reviewed 75.2 2.7 5.9E-05 33.6 2.7 24 2-25 141-164 (298)
366 KOG0074|consensus 74.9 1.1 2.4E-05 32.1 0.3 73 61-140 93-175 (185)
367 KOG1143|consensus 74.9 7 0.00015 32.7 4.9 49 87-135 303-379 (591)
368 KOG0077|consensus 74.8 2.3 4.9E-05 31.3 1.9 23 86-110 120-142 (193)
369 PRK00089 era GTPase Era; Revie 74.2 3.7 8.1E-05 32.4 3.2 25 3-27 146-170 (292)
370 PRK13505 formate--tetrahydrofo 73.1 12 0.00027 32.6 6.2 56 86-143 371-428 (557)
371 TIGR00750 lao LAO/AO transport 72.9 5.3 0.00011 31.9 3.8 25 3-27 213-237 (300)
372 cd01886 EF-G Elongation factor 72.0 3.7 8.1E-05 32.3 2.7 15 87-101 116-130 (270)
373 cd01854 YjeQ_engC YjeQ/EngC. 70.3 4.4 9.6E-05 32.2 2.8 24 2-25 138-161 (287)
374 KOG0458|consensus 70.3 6.2 0.00013 34.5 3.8 48 88-135 316-373 (603)
375 PF14331 ImcF-related_N: ImcF- 70.2 7.2 0.00016 30.7 4.0 64 86-149 68-136 (266)
376 PRK10512 selenocysteinyl-tRNA- 69.7 4.7 0.0001 35.7 3.1 25 3-27 141-165 (614)
377 PRK05433 GTP-binding protein L 69.3 4.6 0.0001 35.6 2.9 24 5-28 161-184 (600)
378 PRK12289 GTPase RsgA; Reviewed 68.7 3.2 7E-05 34.1 1.7 27 1-27 148-174 (352)
379 cd04170 EF-G_bact Elongation f 68.5 8.4 0.00018 30.0 4.1 16 87-102 116-131 (268)
380 PTZ00258 GTP-binding protein; 67.5 6 0.00013 33.0 3.1 44 87-130 220-266 (390)
381 TIGR00483 EF-1_alpha translati 67.4 2.9 6.3E-05 35.1 1.3 19 3-21 182-200 (426)
382 PRK12298 obgE GTPase CgtA; Rev 67.3 8.2 0.00018 32.2 3.9 25 4-28 309-333 (390)
383 KOG0462|consensus 66.9 4.5 9.9E-05 35.2 2.3 23 5-27 212-234 (650)
384 KOG3905|consensus 66.4 6.5 0.00014 32.2 3.0 30 1-30 263-292 (473)
385 PF03193 DUF258: Protein of un 66.1 16 0.00034 26.6 4.7 33 109-141 3-35 (161)
386 cd04169 RF3 RF3 subfamily. Pe 65.9 15 0.00033 28.8 5.0 17 86-102 122-138 (267)
387 COG0012 Predicted GTPase, prob 65.5 9.1 0.0002 31.7 3.7 42 86-127 205-247 (372)
388 PRK12739 elongation factor G; 65.3 24 0.00051 31.8 6.6 25 120-144 254-278 (691)
389 KOG1424|consensus 65.1 6.1 0.00013 34.1 2.7 38 89-128 207-244 (562)
390 PF04670 Gtr1_RagA: Gtr1/RagA 64.6 8 0.00017 29.9 3.1 62 84-146 108-178 (232)
391 PRK13796 GTPase YqeH; Provisio 63.3 9.1 0.0002 31.6 3.4 23 4-26 135-157 (365)
392 PF09439 SRPRB: Signal recogni 61.9 6.8 0.00015 29.1 2.2 18 85-102 110-127 (181)
393 PRK09435 membrane ATPase/prote 60.6 13 0.00029 30.3 3.9 25 3-27 235-259 (332)
394 COG0532 InfB Translation initi 59.3 9 0.0002 33.0 2.8 23 3-25 145-167 (509)
395 cd01882 BMS1 Bms1. Bms1 is an 59.3 13 0.00028 28.3 3.5 46 87-132 132-184 (225)
396 KOG4271|consensus 58.2 11 0.00024 34.8 3.2 28 2-29 3-30 (1100)
397 PF07764 Omega_Repress: Omega 57.7 8.9 0.00019 23.1 1.8 21 9-29 44-64 (71)
398 TIGR00491 aIF-2 translation in 57.6 16 0.00034 32.3 4.1 25 119-143 191-215 (590)
399 KOG2485|consensus 56.5 18 0.00038 29.4 3.8 55 87-142 73-129 (335)
400 KOG0705|consensus 56.4 13 0.00029 32.6 3.3 28 3-30 164-191 (749)
401 TIGR00484 EF-G translation elo 53.1 26 0.00057 31.5 4.8 15 87-101 127-141 (689)
402 COG1217 TypA Predicted membran 51.4 48 0.001 28.7 5.7 59 86-144 119-195 (603)
403 PTZ00327 eukaryotic translatio 51.4 16 0.00034 31.3 3.0 26 2-27 207-232 (460)
404 KOG2486|consensus 50.4 5.5 0.00012 31.8 0.1 56 86-141 247-313 (320)
405 PRK09601 GTP-binding protein Y 49.7 21 0.00046 29.6 3.4 42 86-127 198-240 (364)
406 COG0523 Putative GTPases (G3E 49.4 22 0.00049 28.9 3.5 35 91-127 149-185 (323)
407 COG4359 Uncharacterized conser 49.3 35 0.00075 25.7 4.1 34 107-140 78-111 (220)
408 KOG1486|consensus 49.3 48 0.001 26.4 5.1 50 87-143 238-287 (364)
409 KOG0463|consensus 48.6 46 0.001 28.0 5.1 17 119-135 333-349 (641)
410 PRK14845 translation initiatio 47.6 20 0.00043 33.9 3.2 23 3-25 648-670 (1049)
411 PF08438 MMR_HSR1_C: GTPase of 47.3 21 0.00046 24.2 2.6 31 93-127 1-32 (109)
412 KOG1249|consensus 46.1 30 0.00064 30.2 3.8 23 121-143 188-210 (572)
413 PF00503 G-alpha: G-protein al 46.0 20 0.00044 29.6 2.8 58 86-143 302-389 (389)
414 PRK12317 elongation factor 1-a 45.8 11 0.00023 31.7 1.2 19 3-21 180-198 (425)
415 PRK04004 translation initiatio 45.5 25 0.00054 31.1 3.4 23 3-25 193-215 (586)
416 smart00053 DYNc Dynamin, GTPas 44.5 18 0.00039 28.1 2.2 15 87-101 192-206 (240)
417 PRK09554 feoB ferrous iron tra 43.9 23 0.00051 32.4 3.1 26 1-26 141-166 (772)
418 KOG0085|consensus 43.6 71 0.0015 25.1 5.2 62 86-147 265-352 (359)
419 PF11111 CENP-M: Centromere pr 42.5 1.4E+02 0.003 22.1 6.8 77 61-147 72-152 (176)
420 TIGR00503 prfC peptide chain r 41.2 18 0.0004 31.4 1.9 15 87-101 132-146 (527)
421 cd03110 Fer4_NifH_child This p 40.6 72 0.0016 22.8 4.8 33 87-122 143-175 (179)
422 COG0050 TufB GTPases - transla 38.8 50 0.0011 26.9 3.8 40 89-128 130-177 (394)
423 TIGR01394 TypA_BipA GTP-bindin 38.1 28 0.0006 30.8 2.6 27 2-28 155-191 (594)
424 COG1703 ArgK Putative periplas 37.8 41 0.00088 27.3 3.2 26 1-26 227-252 (323)
425 cd01849 YlqF_related_GTPase Yl 37.7 57 0.0012 22.9 3.8 25 4-28 61-85 (155)
426 PF03308 ArgK: ArgK protein; 37.4 39 0.00085 26.7 3.0 24 3-26 205-228 (266)
427 PRK00007 elongation factor G; 35.7 67 0.0014 29.0 4.6 16 87-102 127-142 (693)
428 cd04170 EF-G_bact Elongation f 35.5 40 0.00086 26.2 2.9 25 119-143 241-265 (268)
429 COG1908 FrhD Coenzyme F420-red 34.8 76 0.0016 22.0 3.7 58 89-146 56-124 (132)
430 COG3545 Predicted esterase of 34.7 61 0.0013 24.1 3.5 43 87-133 117-159 (181)
431 cd01900 YchF YchF subfamily. 31.8 35 0.00076 27.0 2.0 40 87-127 195-236 (274)
432 cd01856 YlqF YlqF. Proteins o 31.4 74 0.0016 22.8 3.6 24 4-27 77-100 (171)
433 PHA02436 hypothetical protein 30.7 50 0.0011 18.6 1.9 17 13-29 17-33 (52)
434 PF09419 PGP_phosphatase: Mito 28.9 2.3E+02 0.0051 20.7 7.0 60 74-138 67-126 (168)
435 PF03193 DUF258: Protein of un 28.8 81 0.0018 22.9 3.3 25 1-25 11-35 (161)
436 PLN00043 elongation factor 1-a 28.5 27 0.00059 29.7 0.9 16 3-18 188-203 (447)
437 cd01852 AIG1 AIG1 (avrRpt2-ind 27.7 2.4E+02 0.0052 20.5 5.8 58 88-145 117-185 (196)
438 KOG3929|consensus 27.2 39 0.00085 27.0 1.5 14 87-100 190-203 (363)
439 KOG2423|consensus 25.9 1.4E+02 0.0031 25.4 4.6 57 87-145 244-300 (572)
440 PF05198 IF3_N: Translation in 24.3 1.2E+02 0.0025 19.1 3.0 30 103-132 26-55 (76)
441 PF05783 DLIC: Dynein light in 23.5 97 0.0021 26.7 3.3 29 1-29 237-265 (472)
442 PF00205 TPP_enzyme_M: Thiamin 23.2 64 0.0014 22.1 1.9 36 87-126 12-47 (137)
443 cd00477 FTHFS Formyltetrahydro 22.3 2.2E+02 0.0047 24.9 5.1 57 86-144 355-413 (524)
444 TIGR00640 acid_CoA_mut_C methy 22.1 2.8E+02 0.006 19.2 5.0 41 104-145 39-79 (132)
445 COG0370 FeoB Fe2+ transport sy 21.7 93 0.002 28.0 2.9 25 1-25 137-161 (653)
446 COG1162 Predicted GTPases [Gen 21.2 61 0.0013 26.1 1.6 27 1-27 140-166 (301)
447 PF04800 ETC_C1_NDUFA4: ETC co 21.1 1E+02 0.0022 20.6 2.4 22 106-127 57-78 (101)
448 PRK10416 signal recognition pa 20.6 1.8E+02 0.004 23.5 4.3 42 89-136 261-302 (318)
449 COG0041 PurE Phosphoribosylcar 20.5 2.6E+02 0.0057 20.3 4.5 34 89-127 5-40 (162)
No 1
>KOG0084|consensus
Probab=99.90 E-value=6.2e-24 Score=155.33 Aligned_cols=115 Identities=29% Similarity=0.431 Sum_probs=93.4
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCc-EEEecCCCCCCHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ-LFETSAKDNINVEEMFM 137 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sak~~~~v~~~f~ 137 (177)
.+|||+++||.++. |+.+++ +-...++|++|||||+||.+.|+|+.++++.||.+++++ |+|||||++.||+++|.
T Consensus 88 vyDiT~~~SF~~v~~Wi~Ei~--~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~ 165 (205)
T KOG0084|consen 88 VYDITKQESFNNVKRWIQEID--RYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFL 165 (205)
T ss_pred EEEcccHHHhhhHHHHHHHhh--hhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHH
Confidence 49999999999998 999984 223357999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcccccCCCCCCCCCCCCC
Q psy1416 138 AITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKCC 177 (177)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~CC 177 (177)
.|+..+..++.............+.+...+. ....++||
T Consensus 166 ~la~~lk~~~~~~~~~~~~~~~~~ql~~~p~-~~~~~~~C 204 (205)
T KOG0084|consen 166 TLAKELKQRKGLHVKWSTASLESVQLKGTPV-KKSNGGCC 204 (205)
T ss_pred HHHHHHHHhcccCCCCCcCCCCceeeCCCCc-ccccCCCC
Confidence 9999998886554332223455666666333 23445577
No 2
>KOG0078|consensus
Probab=99.90 E-value=1.4e-23 Score=155.27 Aligned_cols=88 Identities=32% Similarity=0.431 Sum_probs=80.1
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
.+||||+.||+++. |+..+.+. . .+++|++|||||+||+.+|+|+.+.++++|.++|+.|+|||||+|.||+++|..
T Consensus 91 vyDitne~Sfeni~~W~~~I~e~-a-~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~ 168 (207)
T KOG0078|consen 91 VYDITNEKSFENIRNWIKNIDEH-A-SDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLS 168 (207)
T ss_pred EEEccchHHHHHHHHHHHHHHhh-C-CCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHH
Confidence 49999999999998 99988532 2 348999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1416 139 ITNLVLRSKKE 149 (177)
Q Consensus 139 ~~~~~~~~~~~ 149 (177)
|++.+..+...
T Consensus 169 La~~i~~k~~~ 179 (207)
T KOG0078|consen 169 LARDILQKLED 179 (207)
T ss_pred HHHHHHhhcch
Confidence 99999986544
No 3
>KOG0092|consensus
Probab=99.89 E-value=1e-23 Score=153.69 Aligned_cols=115 Identities=28% Similarity=0.397 Sum_probs=91.3
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|||+.+||..+. |+.++. ....+++.|.|||||+||.+.|+|..+++..+|+..|..|||||||||.||+++|..
T Consensus 84 vYDit~~~SF~~aK~WvkeL~--~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~ 161 (200)
T KOG0092|consen 84 VYDITDEESFEKAKNWVKELQ--RQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQA 161 (200)
T ss_pred EEecccHHHHHHHHHHHHHHH--hhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHH
Confidence 49999999999998 999984 233378999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcccccCCCCCCCCCCCCC
Q psy1416 139 ITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKCC 177 (177)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~CC 177 (177)
|++.++.............+..+.+..+. .+...++||
T Consensus 162 Ia~~lp~~~~~~~~~~~~~~~g~~l~~~~-~~~~~~~~C 199 (200)
T KOG0092|consen 162 IAEKLPCSDPQERQGLPNRRQGVDLNSNQ-EPARPSGCC 199 (200)
T ss_pred HHHhccCccccccccccccccceecccCC-CCcCcCCcC
Confidence 99999877544332112222455555442 223455666
No 4
>KOG0098|consensus
Probab=99.88 E-value=3.8e-23 Score=149.93 Aligned_cols=92 Identities=25% Similarity=0.311 Sum_probs=83.3
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
.+|||+++||+++. ||.++.+ ...+++.|+|+|||+||+..|.|+.+|++.||+++|..|+||||+++.||+++|..
T Consensus 85 Vydit~r~sF~hL~~wL~D~rq--~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 85 VYDITRRESFNHLTSWLEDARQ--HSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN 162 (216)
T ss_pred EEEccchhhHHHHHHHHHHHHH--hcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence 59999999999998 9988742 22468999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy1416 139 ITNLVLRSKKEQKER 153 (177)
Q Consensus 139 ~~~~~~~~~~~~~~~ 153 (177)
.+..|++..+.....
T Consensus 163 ta~~Iy~~~q~g~~~ 177 (216)
T KOG0098|consen 163 TAKEIYRKIQDGVFD 177 (216)
T ss_pred HHHHHHHHHHhcccc
Confidence 999999987765544
No 5
>KOG0091|consensus
Probab=99.88 E-value=2.1e-22 Score=143.29 Aligned_cols=92 Identities=25% Similarity=0.350 Sum_probs=82.9
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
.+||||++||+++. |+.+....-..+..+.+.|||.|+||...|+|+.++|+.+|..+|+.|+||||++|.||+++|..
T Consensus 88 vyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~m 167 (213)
T KOG0091|consen 88 VYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDM 167 (213)
T ss_pred EEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHH
Confidence 49999999999998 99887433444567888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1416 139 ITNLVLRSKKEQK 151 (177)
Q Consensus 139 ~~~~~~~~~~~~~ 151 (177)
+++.+...+++..
T Consensus 168 laqeIf~~i~qGe 180 (213)
T KOG0091|consen 168 LAQEIFQAIQQGE 180 (213)
T ss_pred HHHHHHHHHhcCc
Confidence 9999999887644
No 6
>KOG0079|consensus
Probab=99.87 E-value=2e-22 Score=141.33 Aligned_cols=111 Identities=44% Similarity=0.621 Sum_probs=92.1
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
.+||||.+||.++. |++++ +..++.+|-||||||.|+.++|.|..+++..||...|+.+||||||.+.||+.+|..
T Consensus 87 VYDVTn~ESF~Nv~rWLeei---~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKRWLEEI---RNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred EEECcchhhhHhHHHHHHHH---HhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence 49999999999998 99877 334568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcccccCCCCCCCCCCCCC
Q psy1416 139 ITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKCC 177 (177)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~CC 177 (177)
|.+.+++.+... .........+.+.+++. .+++||
T Consensus 164 it~qvl~~k~r~-~~~~~r~~~~~l~~n~~---~~~k~c 198 (198)
T KOG0079|consen 164 ITKQVLQAKLRE-SVEQQRADAVSLKDNSK---STKKCC 198 (198)
T ss_pred HHHHHHHHHHhh-cHHHHhhcceEeccCCC---ccccCC
Confidence 999998876221 12233456677776643 345788
No 7
>KOG0094|consensus
Probab=99.85 E-value=8.3e-22 Score=144.00 Aligned_cols=88 Identities=25% Similarity=0.283 Sum_probs=79.4
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
.+||||+.||++.. |++++.. .+...++.|+|||||.||.++|+|+.+++...|+++++.|+|||||.|+||.++|..
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~-e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrr 179 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRR-ERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRR 179 (221)
T ss_pred EEeccccchHHHHHHHHHHHHh-ccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHH
Confidence 39999999999998 9999853 334456889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy1416 139 ITNLVLRSKK 148 (177)
Q Consensus 139 ~~~~~~~~~~ 148 (177)
++..+.....
T Consensus 180 Iaa~l~~~~~ 189 (221)
T KOG0094|consen 180 IAAALPGMEV 189 (221)
T ss_pred HHHhccCccc
Confidence 9998887643
No 8
>KOG0088|consensus
Probab=99.85 E-value=1.1e-21 Score=139.13 Aligned_cols=88 Identities=25% Similarity=0.399 Sum_probs=79.6
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
.+||||++||..+. |+.++..- ....+-+++||||+||+.+|+|+.+++..+|+..|+.|+|||||.+.||.++|..
T Consensus 92 VyDITDrdSFqKVKnWV~Elr~m--lGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~ 169 (218)
T KOG0088|consen 92 VYDITDRDSFQKVKNWVLELRTM--LGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFES 169 (218)
T ss_pred EEeccchHHHHHHHHHHHHHHHH--hCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHH
Confidence 59999999999997 99888433 3357889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1416 139 ITNLVLRSKKE 149 (177)
Q Consensus 139 ~~~~~~~~~~~ 149 (177)
+...+++....
T Consensus 170 Lt~~MiE~~s~ 180 (218)
T KOG0088|consen 170 LTAKMIEHSSQ 180 (218)
T ss_pred HHHHHHHHhhh
Confidence 99999887543
No 9
>KOG0093|consensus
Probab=99.85 E-value=1e-21 Score=137.53 Aligned_cols=88 Identities=33% Similarity=0.596 Sum_probs=81.1
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
|+|+||.+||.++. |.-.+. .... .++|+|||||||||+++|.|+.+.+..++.++|..|||+|||.+.||+++|..
T Consensus 100 myDitNeeSf~svqdw~tqIk-tysw-~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~ 177 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQIK-TYSW-DNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFER 177 (193)
T ss_pred EEecCCHHHHHHHHHHHHHhe-eeec-cCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHH
Confidence 69999999999998 998774 4443 58999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1416 139 ITNLVLRSKKE 149 (177)
Q Consensus 139 ~~~~~~~~~~~ 149 (177)
++..|.+++..
T Consensus 178 lv~~Ic~kmse 188 (193)
T KOG0093|consen 178 LVDIICDKMSE 188 (193)
T ss_pred HHHHHHHHhhh
Confidence 99999988754
No 10
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.84 E-value=1.1e-20 Score=144.43 Aligned_cols=113 Identities=30% Similarity=0.290 Sum_probs=89.3
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcC-------------------CCccCHHHHHHHHHHcC-
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQ-------------------KKVVLTEDAQRFANQMG- 118 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~-------------------~~~v~~~~~~~~a~~~~- 118 (177)
++|+++++||.++. |+..+... ...++|++|||||+||.. .|.|+.+++..+|++++
T Consensus 74 V~Dvt~~~Sf~~l~~~~~~l~~~--~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~ 151 (220)
T cd04126 74 TYDVSNVQSLEELEDRFLGLTDT--ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINK 151 (220)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCc
Confidence 58999999999997 76655322 235789999999999975 68899999999999987
Q ss_pred -------------CcEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccCCCCCCCCCCCCC
Q psy1416 119 -------------IQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKCC 177 (177)
Q Consensus 119 -------------~~~~e~Sak~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~CC 177 (177)
++||||||++|.||+++|..+++.++................+.+..+ +.+|++||
T Consensus 152 ~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 220 (220)
T cd04126 152 YKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPNP---KRSKSKCC 220 (220)
T ss_pred cccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCc---ccCCCCCC
Confidence 689999999999999999999999988765554433333345555543 34678899
No 11
>KOG0087|consensus
Probab=99.84 E-value=8.5e-21 Score=140.25 Aligned_cols=90 Identities=27% Similarity=0.325 Sum_probs=80.8
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
.+|||.+.||+++. ||.++.. ...++++|+|||||+||...|.|..++++.+|++.+..|+||||+++.||+.+|..
T Consensus 93 VYDITr~~Tfenv~rWL~ELRd--had~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~ 170 (222)
T KOG0087|consen 93 VYDITRRQTFENVERWLKELRD--HADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFER 170 (222)
T ss_pred EEechhHHHHHHHHHHHHHHHh--cCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHH
Confidence 39999999999998 9998842 23358999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1416 139 ITNLVLRSKKEQK 151 (177)
Q Consensus 139 ~~~~~~~~~~~~~ 151 (177)
++..|+.......
T Consensus 171 ~l~~I~~~vs~k~ 183 (222)
T KOG0087|consen 171 VLTEIYKIVSKKQ 183 (222)
T ss_pred HHHHHHHHHHHHh
Confidence 9999988754443
No 12
>KOG0080|consensus
Probab=99.83 E-value=3.5e-21 Score=136.76 Aligned_cols=115 Identities=23% Similarity=0.296 Sum_probs=92.4
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
.+|||.++||.++. |+.+++ .+...+++..+|||||+|-++.|.|+.+++..||+++++.|+|+|||+.+||...|++
T Consensus 90 VYDVT~Rdtf~kLd~W~~Eld-~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fee 168 (209)
T KOG0080|consen 90 VYDVTSRDTFVKLDIWLKELD-LYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEE 168 (209)
T ss_pred EEEccchhhHHhHHHHHHHHH-hhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHH
Confidence 59999999999998 999985 6777788999999999999989999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcccccCCCCCC--CCCCCCC
Q psy1416 139 ITNLVLRSKKEQKERQVLNSDTVNIRKHTTKP--GGKKKCC 177 (177)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~CC 177 (177)
++.+|++.. ..-+..+.....++..++.-. ...++||
T Consensus 169 lveKIi~tp--~l~~~~n~~~~~~i~~~p~~~~~~~~g~~C 207 (209)
T KOG0080|consen 169 LVEKIIETP--SLWEEGNSSAGLDIASDPDGEASAHQGGCC 207 (209)
T ss_pred HHHHHhcCc--chhhccCCccccccccCCCcccccccCCcc
Confidence 999998752 122222333445555433222 2235677
No 13
>KOG0081|consensus
Probab=99.81 E-value=8.7e-20 Score=129.54 Aligned_cols=91 Identities=26% Similarity=0.407 Sum_probs=83.6
Q ss_pred cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q psy1416 61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139 (177)
Q Consensus 61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~ 139 (177)
.|+|++.||.++. |+..+. .+..+.++-|||+|||+||++.|+|+.+++.++|.+++++||||||.+|.||+++.+.+
T Consensus 98 FDlT~eqSFLnvrnWlSQL~-~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~L 176 (219)
T KOG0081|consen 98 FDLTSEQSFLNVRNWLSQLQ-THAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELL 176 (219)
T ss_pred EeccchHHHHHHHHHHHHHH-HhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHH
Confidence 8999999999998 999884 56666788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1416 140 TNLVLRSKKEQKE 152 (177)
Q Consensus 140 ~~~~~~~~~~~~~ 152 (177)
+..+++++....+
T Consensus 177 ldlvM~Rie~~v~ 189 (219)
T KOG0081|consen 177 LDLVMKRIEQCVE 189 (219)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998766544
No 14
>KOG0394|consensus
Probab=99.81 E-value=1.8e-19 Score=130.61 Aligned_cols=107 Identities=25% Similarity=0.266 Sum_probs=85.4
Q ss_pred cccchhhhhcccc-hhhhhhhhhc--cCCCCcEEEEeeCCCCcC--CCccCHHHHHHHHHHcC-CcEEEecCCCCCCHHH
Q psy1416 61 CTVLNECAWLGCG-WMTICPIIYC--WLFPSGLRLVGNKNDDPQ--KKVVLTEDAQRFANQMG-IQLFETSAKDNINVEE 134 (177)
Q Consensus 61 ~dit~~~Sf~~~~-w~~~~~~~~~--~~~~~~~ilvgnK~Dl~~--~~~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~ 134 (177)
+|+++.+||+++. |-+++..... .+...|+||+|||+|+.+ .|+|+.+.|..||...| ++|||||||.+.||++
T Consensus 89 ydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~ 168 (210)
T KOG0394|consen 89 YDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDE 168 (210)
T ss_pred eecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHH
Confidence 6999999999998 9988743332 235689999999999976 39999999999999876 8999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccccCCC
Q psy1416 135 MFMAITNLVLRSKKEQKERQVLNSDTVNIRKHT 167 (177)
Q Consensus 135 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 167 (177)
+|..+++.++..............+.+.+....
T Consensus 169 AFe~ia~~aL~~E~~~~~~~~~~~d~i~~~~~~ 201 (210)
T KOG0394|consen 169 AFEEIARRALANEDREIAELADYSDQIVLSTKA 201 (210)
T ss_pred HHHHHHHHHHhccchhhhhhhhcCccccccccc
Confidence 999999999987644232333445556555543
No 15
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.80 E-value=2.3e-19 Score=135.42 Aligned_cols=86 Identities=29% Similarity=0.471 Sum_probs=75.6
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHc-CCcEEEecCCCCCCHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQM-GIQLFETSAKDNINVEEMFM 137 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~-~~~~~e~Sak~~~~v~~~f~ 137 (177)
++|+|+++||+++. |+..+... ...++|++|||||+||...+.|+.+++.++|+++ ++.|+||||++|.||+++|.
T Consensus 79 VfDvtd~~Sf~~l~~w~~~i~~~--~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 79 VYDITKKETFDDLPKWMKMIDKY--ASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred EEECcCHHHHHHHHHHHHHHHHh--CCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHH
Confidence 58999999999998 99876322 2357999999999999888999999999999886 78999999999999999999
Q ss_pred HHHHHHHHHH
Q psy1416 138 AITNLVLRSK 147 (177)
Q Consensus 138 ~~~~~~~~~~ 147 (177)
.+++.+....
T Consensus 157 ~l~~~~~~~~ 166 (202)
T cd04120 157 KLVDDILKKM 166 (202)
T ss_pred HHHHHHHHhC
Confidence 9999887653
No 16
>KOG0083|consensus
Probab=99.79 E-value=3.4e-20 Score=128.13 Aligned_cols=86 Identities=30% Similarity=0.506 Sum_probs=77.4
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
.+||+|+.||+++. |+.++. .+.. ..+.++|+|||+|+..+|.|..++++.+|+.++++|+|+|||+|.||+.+|..
T Consensus 77 lydiankasfdn~~~wlsei~-ey~k-~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ 154 (192)
T KOG0083|consen 77 LYDIANKASFDNCQAWLSEIH-EYAK-EAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLA 154 (192)
T ss_pred eeecccchhHHHHHHHHHHHH-HHHH-hhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHH
Confidence 48999999999998 998873 3332 36788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 139 ITNLVLRSK 147 (177)
Q Consensus 139 ~~~~~~~~~ 147 (177)
+++++.+..
T Consensus 155 ia~~l~k~~ 163 (192)
T KOG0083|consen 155 IAEELKKLK 163 (192)
T ss_pred HHHHHHHhc
Confidence 999988764
No 17
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.79 E-value=9e-19 Score=131.84 Aligned_cols=118 Identities=26% Similarity=0.295 Sum_probs=87.6
Q ss_pred ccccchhhhhcccc-hhhhhhhhhc--cCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC-CcEEEecCCCCCCHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYC--WLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEM 135 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~--~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~~ 135 (177)
++|+++++||+++. |+..+..... ...++|++|||||+||...+.+..+++.++++.++ ..|+++||++|.||+++
T Consensus 80 v~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~ 159 (201)
T cd04107 80 VFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA 159 (201)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence 58999999999997 9887643211 12578999999999998777889999999999999 68999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcccccCCCCCCCCCCCCC
Q psy1416 136 FMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKCC 177 (177)
Q Consensus 136 f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~CC 177 (177)
|..+++.+.+..+............+....+....++.+.||
T Consensus 160 f~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (201)
T cd04107 160 MRFLVKNILANDKNLQQAETPEDGSVIDLKQTTTKKKSKGCC 201 (201)
T ss_pred HHHHHHHHHHhchhhHhhcCCCcccccccccceeccccCCCC
Confidence 999999998775443333322222222222222333445698
No 18
>KOG0086|consensus
Probab=99.79 E-value=1.5e-19 Score=127.52 Aligned_cols=100 Identities=23% Similarity=0.229 Sum_probs=86.4
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
.+|+|+++||+.+. |+.++. --.++++.++|+|||.||..+|+|+..++..||++..+.|.||||+||+||++.|..
T Consensus 88 VYD~TsrdsfnaLtnWL~DaR--~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~ 165 (214)
T KOG0086|consen 88 VYDITSRDSFNALTNWLTDAR--TLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK 165 (214)
T ss_pred EEeccchhhHHHHHHHHHHHH--hhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHH
Confidence 49999999999997 998773 333468999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcc
Q psy1416 139 ITNLVLRSKKEQKERQVLNSDTV 161 (177)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~ 161 (177)
.++.|+.+....+.++...+..|
T Consensus 166 c~~tIl~kIE~GElDPer~gsGI 188 (214)
T KOG0086|consen 166 CARTILNKIESGELDPERMGSGI 188 (214)
T ss_pred HHHHHHHHHhhcCCCHHHccccc
Confidence 99999998866655544444333
No 19
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.78 E-value=4.5e-19 Score=132.56 Aligned_cols=85 Identities=29% Similarity=0.382 Sum_probs=76.8
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|+|++.||+++. |++++.. . .+++|++|||||+||...+.|+.+++..+|+.++++||||||++|.||+++|..
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~-~--~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDE-H--APGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHH-h--CCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 59999999999998 9988842 2 247999999999999988899999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 139 ITNLVLRSK 147 (177)
Q Consensus 139 ~~~~~~~~~ 147 (177)
+++.+..+.
T Consensus 162 l~~~i~~~~ 170 (189)
T cd04121 162 LARIVLMRH 170 (189)
T ss_pred HHHHHHHhc
Confidence 999887653
No 20
>KOG0097|consensus
Probab=99.78 E-value=6.5e-19 Score=123.00 Aligned_cols=90 Identities=24% Similarity=0.356 Sum_probs=80.8
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
.+|||.+.++.++. |+.+. ++-..++..|+|+|||.||+.+|.|+.+++++||+++|..|+|+|||+|.||+++|.+
T Consensus 90 vyditrrstynhlsswl~da--r~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle 167 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSSWLTDA--RNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLE 167 (215)
T ss_pred EEEehhhhhhhhHHHHHhhh--hccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHH
Confidence 49999999999998 99765 3333468899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1416 139 ITNLVLRSKKEQK 151 (177)
Q Consensus 139 ~~~~~~~~~~~~~ 151 (177)
.++.|.+..+...
T Consensus 168 ~akkiyqniqdgs 180 (215)
T KOG0097|consen 168 TAKKIYQNIQDGS 180 (215)
T ss_pred HHHHHHHhhhcCc
Confidence 9999998776543
No 21
>PTZ00099 rab6; Provisional
Probab=99.75 E-value=1.9e-18 Score=127.83 Aligned_cols=85 Identities=24% Similarity=0.212 Sum_probs=75.1
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|+++++||..+. |+..+.... ..++|++|||||+||...+.|+.+++..++..++..|+|+||++|.||+++|..
T Consensus 59 v~D~t~~~sf~~~~~w~~~i~~~~--~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~ 136 (176)
T PTZ00099 59 VYDITNRQSFENTTKWIQDILNER--GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKK 136 (176)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 58999999999997 998774222 247899999999999877889999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy1416 139 ITNLVLRS 146 (177)
Q Consensus 139 ~~~~~~~~ 146 (177)
+++.+.+.
T Consensus 137 l~~~l~~~ 144 (176)
T PTZ00099 137 IAAKLPNL 144 (176)
T ss_pred HHHHHHhc
Confidence 99998764
No 22
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.75 E-value=1.8e-18 Score=129.98 Aligned_cols=80 Identities=19% Similarity=0.261 Sum_probs=70.4
Q ss_pred ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcC-------------------CCccCHHHHHHHHHHcC
Q psy1416 60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQ-------------------KKVVLTEDAQRFANQMG 118 (177)
Q Consensus 60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~-------------------~~~v~~~~~~~~a~~~~ 118 (177)
++|++++.||+++ . |+.++.. . .+++|++|||||+||.. .+.|+.+++..+|++++
T Consensus 94 v~d~t~~~Sf~~~~~~w~~~i~~-~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~ 170 (195)
T cd01873 94 CFSIASPNSLRNVKTMWYPEIRH-F--CPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELG 170 (195)
T ss_pred EEECCChhHHHHHHHHHHHHHHH-h--CCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhC
Confidence 5899999999999 3 9887732 2 24789999999999964 47899999999999999
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHH
Q psy1416 119 IQLFETSAKDNINVEEMFMAITNL 142 (177)
Q Consensus 119 ~~~~e~Sak~~~~v~~~f~~~~~~ 142 (177)
++|+|||||+|.||+++|..+++.
T Consensus 171 ~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 171 IPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHh
Confidence 999999999999999999999864
No 23
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.75 E-value=4.1e-18 Score=131.05 Aligned_cols=85 Identities=18% Similarity=0.169 Sum_probs=73.6
Q ss_pred ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcC------------CCccCHHHHHHHHHHcCC-cEEEe
Q psy1416 60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQ------------KKVVLTEDAQRFANQMGI-QLFET 124 (177)
Q Consensus 60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~------------~~~v~~~~~~~~a~~~~~-~~~e~ 124 (177)
++|+|+++||+++ . |+.++... .+++|+||||||+||.. .+.|+.+++.++|+++++ .||||
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~---~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~Et 167 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDY---CPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLEC 167 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHh---CCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEc
Confidence 5899999999985 5 99877422 24789999999999964 378999999999999998 69999
Q ss_pred cCCCCC-CHHHHHHHHHHHHHHHH
Q psy1416 125 SAKDNI-NVEEMFMAITNLVLRSK 147 (177)
Q Consensus 125 Sak~~~-~v~~~f~~~~~~~~~~~ 147 (177)
||++|. ||+++|..+++.+++..
T Consensus 168 SAktg~~~V~e~F~~~~~~~~~~~ 191 (232)
T cd04174 168 SAFTSEKSIHSIFRSASLLCLNKL 191 (232)
T ss_pred cCCcCCcCHHHHHHHHHHHHHHhc
Confidence 999998 89999999999988753
No 24
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.75 E-value=2.4e-18 Score=127.94 Aligned_cols=82 Identities=21% Similarity=0.229 Sum_probs=71.4
Q ss_pred ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcC------------CCccCHHHHHHHHHHcCC-cEEEe
Q psy1416 60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQ------------KKVVLTEDAQRFANQMGI-QLFET 124 (177)
Q Consensus 60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~------------~~~v~~~~~~~~a~~~~~-~~~e~ 124 (177)
++|++++.||+++ . |+..+.. . .+++|++|||||+||.+ .+.|+.+++.++|+++++ +|+||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~-~--~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQE-F--CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHH-H--CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 5999999999998 5 9987742 2 24789999999999964 356999999999999996 89999
Q ss_pred cCCCCCC-HHHHHHHHHHHHH
Q psy1416 125 SAKDNIN-VEEMFMAITNLVL 144 (177)
Q Consensus 125 Sak~~~~-v~~~f~~~~~~~~ 144 (177)
||++|.| |+++|..+++.++
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 160 SALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHh
Confidence 9999998 9999999998654
No 25
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.74 E-value=3.2e-18 Score=126.63 Aligned_cols=82 Identities=23% Similarity=0.333 Sum_probs=71.3
Q ss_pred ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcCCC----------ccCHHHHHHHHHHcCC-cEEEecC
Q psy1416 60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQKK----------VVLTEDAQRFANQMGI-QLFETSA 126 (177)
Q Consensus 60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~----------~v~~~~~~~~a~~~~~-~~~e~Sa 126 (177)
++|+++++||+++ . |+.++... .+++|++|||||+||.+++ .|+.+++..+|+.+++ .|+||||
T Consensus 79 vyd~~~~~Sf~~~~~~w~~~i~~~---~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 155 (176)
T cd04133 79 AFSLISRASYENVLKKWVPELRHY---APNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSS 155 (176)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCC
Confidence 5999999999998 5 99877322 2479999999999997653 5899999999999998 5999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy1416 127 KDNINVEEMFMAITNLVL 144 (177)
Q Consensus 127 k~~~~v~~~f~~~~~~~~ 144 (177)
++|.||+++|..+++.+.
T Consensus 156 k~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 156 KTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred CcccCHHHHHHHHHHHHh
Confidence 999999999999998763
No 26
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.73 E-value=2e-17 Score=123.47 Aligned_cols=90 Identities=22% Similarity=0.317 Sum_probs=76.7
Q ss_pred ccccchhhhhcccc-hhhhhhhhhcc-CCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCW-LFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~ 137 (177)
++|+++..||+++. |+..+...... ..++|++|||||+||...+.++..++..+++.++++|+++||++|.||+++|.
T Consensus 77 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~ 156 (190)
T cd04144 77 VYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFY 156 (190)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHH
Confidence 58999999999997 98777433221 35789999999999988788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1416 138 AITNLVLRSKKE 149 (177)
Q Consensus 138 ~~~~~~~~~~~~ 149 (177)
.+++.+..+...
T Consensus 157 ~l~~~l~~~~~~ 168 (190)
T cd04144 157 TLVRALRQQRQG 168 (190)
T ss_pred HHHHHHHHhhcc
Confidence 999988765433
No 27
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.73 E-value=7.5e-18 Score=124.80 Aligned_cols=82 Identities=22% Similarity=0.198 Sum_probs=70.7
Q ss_pred ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcC------------CCccCHHHHHHHHHHcCC-cEEEe
Q psy1416 60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQ------------KKVVLTEDAQRFANQMGI-QLFET 124 (177)
Q Consensus 60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~------------~~~v~~~~~~~~a~~~~~-~~~e~ 124 (177)
++|+++++||+++ . |+..+.. . .+++|++|||||+||.. .+.|+.+++.++|+++++ .|+||
T Consensus 79 vfdit~~~Sf~~~~~~w~~~i~~-~--~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~ 155 (178)
T cd04131 79 CFDISRPETLDSVLKKWRGEIQE-F--CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLEC 155 (178)
T ss_pred EEECCChhhHHHHHHHHHHHHHH-H--CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEEC
Confidence 5999999999996 5 9987742 2 25789999999999964 356999999999999997 79999
Q ss_pred cCCCCCC-HHHHHHHHHHHHH
Q psy1416 125 SAKDNIN-VEEMFMAITNLVL 144 (177)
Q Consensus 125 Sak~~~~-v~~~f~~~~~~~~ 144 (177)
||++|.| |+++|..+++..+
T Consensus 156 SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 156 SAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred ccCcCCcCHHHHHHHHHHHHh
Confidence 9999995 9999999998654
No 28
>PLN03110 Rab GTPase; Provisional
Probab=99.72 E-value=3.3e-17 Score=124.86 Aligned_cols=87 Identities=24% Similarity=0.262 Sum_probs=76.3
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|++++.||.++. |+..+... ...++|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~ 168 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDH--ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT 168 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHh--CCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 48899999999997 99877422 2247999999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy1416 139 ITNLVLRSKK 148 (177)
Q Consensus 139 ~~~~~~~~~~ 148 (177)
+++.+.+...
T Consensus 169 l~~~i~~~~~ 178 (216)
T PLN03110 169 ILLEIYHIIS 178 (216)
T ss_pred HHHHHHHHhh
Confidence 9999987543
No 29
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.72 E-value=1.9e-17 Score=121.88 Aligned_cols=86 Identities=22% Similarity=0.298 Sum_probs=75.5
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|++++.||..+. |+..+... ...+++|++|||||+||.+.+.++.+++..+++.++++|+||||++|.||+++|..
T Consensus 80 v~d~~~~~Sf~~~~~~~~~i~~~-~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~ 158 (172)
T cd04141 80 CYSVTDRHSFQEASEFKKLITRV-RLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHG 158 (172)
T ss_pred EEECCchhHHHHHHHHHHHHHHh-cCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHH
Confidence 58999999999997 87766432 22357999999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy1416 139 ITNLVLRS 146 (177)
Q Consensus 139 ~~~~~~~~ 146 (177)
+++.+.+.
T Consensus 159 l~~~~~~~ 166 (172)
T cd04141 159 LVREIRRK 166 (172)
T ss_pred HHHHHHHh
Confidence 99988764
No 30
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.72 E-value=4e-17 Score=121.93 Aligned_cols=111 Identities=30% Similarity=0.414 Sum_probs=85.4
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|+++++||+++. |+..+... ...++|++|||||+||...+.+..+++..++..++.+|+|+||++|.||+++|..
T Consensus 80 v~D~~~~~s~~~~~~~~~~i~~~--~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~ 157 (191)
T cd04112 80 LYDITNKASFDNIRAWLTEIKEY--AQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTA 157 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 58999999999997 98877422 2247899999999999877888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcccccCCCCCCCCCCCCC
Q psy1416 139 ITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKCC 177 (177)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~CC 177 (177)
+++.+.+.... .... ....+..=....+++++||
T Consensus 158 l~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~ 191 (191)
T cd04112 158 VAKELKHRKYE----QPDE-GKFKISDYVTKQKKISRCC 191 (191)
T ss_pred HHHHHHHhccc----cCCC-CcEEeccccCcccccCCCC
Confidence 99998766322 1111 1222322223345678898
No 31
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.72 E-value=3.6e-17 Score=123.02 Aligned_cols=114 Identities=47% Similarity=0.659 Sum_probs=85.8
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|+++++||..+. |+..+.. ..+.+|++|||||+||...+.+..+++..+++.++..||++||++|.||+++|..
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~---~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQ---NCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHH---hCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence 58999999999997 9987632 2247899999999999887788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcccccCCCCCCCCCCCCC
Q psy1416 139 ITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKCC 177 (177)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~CC 177 (177)
+++.++........ ....-+.......+.+.+++++||
T Consensus 162 l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T cd04110 162 ITELVLRAKKDNLA-KQQQQQQNDVVKLPKNSKRKKRCC 199 (199)
T ss_pred HHHHHHHhhhccCc-ccccCCccccCccchhccccccCC
Confidence 99999876433211 111111122222233335677898
No 32
>KOG0395|consensus
Probab=99.71 E-value=2.3e-17 Score=123.89 Aligned_cols=86 Identities=24% Similarity=0.236 Sum_probs=76.5
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
.++||++.||+.+. |+..+. .......+|++|||||+||...|.|+.++|..+|..++++|+|+||+.+.+|+++|..
T Consensus 81 Vysitd~~SF~~~~~l~~~I~-r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~ 159 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQIL-RVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYE 159 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHH-HhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHH
Confidence 49999999999997 776663 3333456999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy1416 139 ITNLVLRS 146 (177)
Q Consensus 139 ~~~~~~~~ 146 (177)
+++.+...
T Consensus 160 L~r~~~~~ 167 (196)
T KOG0395|consen 160 LVREIRLP 167 (196)
T ss_pred HHHHHHhh
Confidence 99988763
No 33
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.71 E-value=1.4e-17 Score=121.04 Aligned_cols=82 Identities=22% Similarity=0.264 Sum_probs=70.5
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCc--CCCccCHHHHHHHHHHc-CCcEEEecCCCCCCHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDP--QKKVVLTEDAQRFANQM-GIQLFETSAKDNINVEEM 135 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~--~~~~v~~~~~~~~a~~~-~~~~~e~Sak~~~~v~~~ 135 (177)
++|++|++||.++. |+..+.. ....+++|++|||||.||. ..+.|+.+++.+++++. ++.|+||||++|.||+++
T Consensus 72 v~d~~~~~sf~~~~~~~~~i~~-~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~ 150 (158)
T cd04103 72 VFSLENEASFQTVYNLYHQLSS-YRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERV 150 (158)
T ss_pred EEECCCHHHHHHHHHHHHHHHH-hcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHH
Confidence 59999999999997 9988742 2223578999999999995 46889999999999887 489999999999999999
Q ss_pred HHHHHHH
Q psy1416 136 FMAITNL 142 (177)
Q Consensus 136 f~~~~~~ 142 (177)
|..+++.
T Consensus 151 f~~~~~~ 157 (158)
T cd04103 151 FQEAAQK 157 (158)
T ss_pred HHHHHhh
Confidence 9999865
No 34
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.70 E-value=5.5e-17 Score=117.42 Aligned_cols=83 Identities=31% Similarity=0.450 Sum_probs=75.0
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|+++++||+++. |+..+..... .++|++|||||.|+.+.+.|+.+++..++++++.+|+|+||+++.||.++|..
T Consensus 78 ~fd~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 155 (162)
T PF00071_consen 78 VFDVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQE 155 (162)
T ss_dssp EEETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHH
T ss_pred ccccccccccccccccccccccccc--ccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHH
Confidence 58999999999998 9988743222 46899999999999988899999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy1416 139 ITNLVL 144 (177)
Q Consensus 139 ~~~~~~ 144 (177)
+++.+.
T Consensus 156 ~i~~i~ 161 (162)
T PF00071_consen 156 LIRKIL 161 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
No 35
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.69 E-value=1.7e-16 Score=120.49 Aligned_cols=89 Identities=27% Similarity=0.356 Sum_probs=77.3
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|+++++||.++. |+..+... .....+|++|||||+||...+.++.+++..+++.+++.|+|+||++|.||+++|..
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~-~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSH-IQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 58999999999997 99877422 22246889999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1416 139 ITNLVLRSKKE 149 (177)
Q Consensus 139 ~~~~~~~~~~~ 149 (177)
+++.+.+....
T Consensus 161 l~~~~~~~~~~ 171 (211)
T cd04111 161 LTQEIYERIKR 171 (211)
T ss_pred HHHHHHHHhhc
Confidence 99998877533
No 36
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.69 E-value=1.3e-16 Score=121.40 Aligned_cols=87 Identities=24% Similarity=0.291 Sum_probs=76.0
Q ss_pred ccccchhhhhcccc-hhhhhhhhhcc-CCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCW-LFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~ 137 (177)
++|+++++||.++. |+..+...... ..++|++|||||+||...+.++.+++..+++.++++|+++||++|.||+++|.
T Consensus 80 V~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~ 159 (215)
T cd04109 80 VYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQ 159 (215)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 59999999999997 99877433221 24678999999999988888999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 138 AITNLVLRS 146 (177)
Q Consensus 138 ~~~~~~~~~ 146 (177)
.+++.+...
T Consensus 160 ~l~~~l~~~ 168 (215)
T cd04109 160 QLAAELLGV 168 (215)
T ss_pred HHHHHHHhc
Confidence 999998764
No 37
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.69 E-value=1.1e-16 Score=116.61 Aligned_cols=84 Identities=26% Similarity=0.389 Sum_probs=74.3
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|+++++||..+. |+..+... ..++.|++|||||+||...+.++.+++..+++.++++|+|+||++|.||+++|..
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~ 158 (166)
T cd04122 81 VYDITRRSTYNHLSSWLTDARNL--TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLE 158 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 58999999999997 99776322 2347899999999999988889999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy1416 139 ITNLVLR 145 (177)
Q Consensus 139 ~~~~~~~ 145 (177)
+++.+.+
T Consensus 159 l~~~~~~ 165 (166)
T cd04122 159 TAKKIYQ 165 (166)
T ss_pred HHHHHhh
Confidence 9988754
No 38
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.69 E-value=8.1e-17 Score=120.42 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=70.8
Q ss_pred ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcC-CcEEEe
Q psy1416 60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMG-IQLFET 124 (177)
Q Consensus 60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~-~~~~e~ 124 (177)
++|++++.||+++. |+..+.. . .+++|++|||||+||.+. +.|+.+++..+|++++ ..|+|+
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~-~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~ 157 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCH-H--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLEC 157 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-h--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEe
Confidence 58999999999994 9876632 2 247999999999999754 3578899999999998 589999
Q ss_pred cCCCCCCHHHHHHHHHHHHHH
Q psy1416 125 SAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 125 Sak~~~~v~~~f~~~~~~~~~ 145 (177)
||++|.||+++|..+++.+..
T Consensus 158 SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 158 SALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999987753
No 39
>PLN03108 Rab family protein; Provisional
Probab=99.68 E-value=2.8e-16 Score=119.21 Aligned_cols=87 Identities=25% Similarity=0.370 Sum_probs=76.5
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||.++. |+..+... ....+|+++||||+||...+.++.+++..+++.++++|+|+||+++.||+++|..
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~--~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~ 162 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQH--ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 58999999999997 98766322 2247899999999999988889999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy1416 139 ITNLVLRSKK 148 (177)
Q Consensus 139 ~~~~~~~~~~ 148 (177)
+++.++++..
T Consensus 163 l~~~~~~~~~ 172 (210)
T PLN03108 163 TAAKIYKKIQ 172 (210)
T ss_pred HHHHHHHHhh
Confidence 9999987654
No 40
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.68 E-value=1.6e-16 Score=118.57 Aligned_cols=83 Identities=22% Similarity=0.203 Sum_probs=70.2
Q ss_pred ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCC------------ccCHHHHHHHHHHcC-CcEEEe
Q psy1416 60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKK------------VVLTEDAQRFANQMG-IQLFET 124 (177)
Q Consensus 60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~------------~v~~~~~~~~a~~~~-~~~~e~ 124 (177)
++|+++++||.++. |+..+.. . .+++|++|||||+||...+ .++.+++..+++..+ +.|+|+
T Consensus 78 v~dv~~~~sf~~~~~~~~~~i~~-~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 154 (189)
T cd04134 78 CFSVDSPDSLENVESKWLGEIRE-H--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLEC 154 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHH-h--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 49999999999984 9877742 1 2479999999999997543 467888999999887 689999
Q ss_pred cCCCCCCHHHHHHHHHHHHHH
Q psy1416 125 SAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 125 Sak~~~~v~~~f~~~~~~~~~ 145 (177)
||++|.||+++|..+++.++.
T Consensus 155 SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 155 SAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred cCCcCCCHHHHHHHHHHHHhc
Confidence 999999999999999988863
No 41
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.67 E-value=1.5e-16 Score=115.65 Aligned_cols=81 Identities=31% Similarity=0.409 Sum_probs=71.9
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|+++++||..+. |+..+... ...++|+++||||.||...+.++.+++..+++.++.+|+|+||++|.||+++|..
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~--~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 156 (161)
T cd04117 79 VYDISSERSYQHIMKWVSDVDEY--APEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTR 156 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 48999999999998 99876422 2247999999999999888889999999999999999999999999999999999
Q ss_pred HHHH
Q psy1416 139 ITNL 142 (177)
Q Consensus 139 ~~~~ 142 (177)
|++.
T Consensus 157 l~~~ 160 (161)
T cd04117 157 LTEL 160 (161)
T ss_pred HHhh
Confidence 9864
No 42
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.67 E-value=1.9e-16 Score=116.64 Aligned_cols=86 Identities=30% Similarity=0.465 Sum_probs=75.7
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|+++++||.++. |+..+.. ....+++|++|||||+||...+.++.+++..++++++++|+++||++|.||+++|..
T Consensus 93 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~ 171 (180)
T cd04127 93 IFDLTNEQSFLNVRNWMSQLQT-HAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVER 171 (180)
T ss_pred EEECCCHHHHHHHHHHHHHHHH-hcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 58999999999997 9987742 222357899999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy1416 139 ITNLVLRS 146 (177)
Q Consensus 139 ~~~~~~~~ 146 (177)
+++.++++
T Consensus 172 l~~~~~~~ 179 (180)
T cd04127 172 LLDLVMKR 179 (180)
T ss_pred HHHHHHhh
Confidence 99888754
No 43
>PTZ00369 Ras-like protein; Provisional
Probab=99.67 E-value=2.2e-16 Score=117.70 Aligned_cols=87 Identities=25% Similarity=0.300 Sum_probs=75.7
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|+++++||+.+. |+..+... ...+++|++|||||+|+...+.++.+++..+++.++.+|+++||++|.||+++|..
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~-~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRV-KDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 58999999999997 98776422 22357899999999999877888988999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 139 ITNLVLRSK 147 (177)
Q Consensus 139 ~~~~~~~~~ 147 (177)
+++.+.+..
T Consensus 162 l~~~l~~~~ 170 (189)
T PTZ00369 162 LVREIRKYL 170 (189)
T ss_pred HHHHHHHHh
Confidence 999887653
No 44
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.66 E-value=4.1e-16 Score=115.99 Aligned_cols=86 Identities=30% Similarity=0.387 Sum_probs=75.3
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++++||.++. |+..+... ....+|++|||||+|+...+.+..+++..+++..+++|+|+||++|.||+++|..
T Consensus 79 v~d~~~~~s~~~i~~~~~~i~~~--~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~ 156 (188)
T cd04125 79 VYDVTDQESFENLKFWINEINRY--ARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFIL 156 (188)
T ss_pred EEECcCHHHHHHHHHHHHHHHHh--CCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 48999999999998 99877422 2245899999999999888888999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 139 ITNLVLRSK 147 (177)
Q Consensus 139 ~~~~~~~~~ 147 (177)
+++.+..+.
T Consensus 157 l~~~~~~~~ 165 (188)
T cd04125 157 LVKLIIKRL 165 (188)
T ss_pred HHHHHHHHh
Confidence 999987653
No 45
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.66 E-value=3.5e-16 Score=119.65 Aligned_cols=85 Identities=20% Similarity=0.183 Sum_probs=71.5
Q ss_pred ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcCC-cEEEe
Q psy1416 60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMGI-QLFET 124 (177)
Q Consensus 60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~e~ 124 (177)
++|+++++||+++ . |..++. ...+++|++|||||+||... ..|+.+++..+|+++++ .|+||
T Consensus 79 vfdis~~~Sf~~i~~~w~~~~~---~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~ 155 (222)
T cd04173 79 CFDISRPETLDSVLKKWQGETQ---EFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVEC 155 (222)
T ss_pred EEECCCHHHHHHHHHHHHHHHH---hhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEc
Confidence 6999999999999 4 876552 22357999999999999642 24888999999999996 89999
Q ss_pred cCCCCCC-HHHHHHHHHHHHHHHH
Q psy1416 125 SAKDNIN-VEEMFMAITNLVLRSK 147 (177)
Q Consensus 125 Sak~~~~-v~~~f~~~~~~~~~~~ 147 (177)
||+++.+ |+++|..+++.++...
T Consensus 156 SAk~~~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 156 SSRSSERSVRDVFHVATVASLGRG 179 (222)
T ss_pred CCCcCCcCHHHHHHHHHHHHHhcc
Confidence 9999985 9999999999887654
No 46
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.65 E-value=3e-16 Score=115.77 Aligned_cols=81 Identities=16% Similarity=0.232 Sum_probs=69.5
Q ss_pred ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcC-CcEEEe
Q psy1416 60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMG-IQLFET 124 (177)
Q Consensus 60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~-~~~~e~ 124 (177)
++|+++++||+++. |+..+.. . .+++|++|||||+||... +.|+.+++.+++++.+ ..|+|+
T Consensus 79 v~d~~~~~s~~~~~~~w~~~i~~-~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~ 155 (175)
T cd01874 79 CFSVVSPSSFENVKEKWVPEITH-H--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVEC 155 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHH-h--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEe
Confidence 59999999999994 9877632 2 247899999999999653 6789999999999987 689999
Q ss_pred cCCCCCCHHHHHHHHHHHH
Q psy1416 125 SAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 125 Sak~~~~v~~~f~~~~~~~ 143 (177)
||++|.||+++|..+++.+
T Consensus 156 SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 156 SALTQKGLKNVFDEAILAA 174 (175)
T ss_pred cCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998754
No 47
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.63 E-value=8.1e-16 Score=111.84 Aligned_cols=85 Identities=24% Similarity=0.283 Sum_probs=73.0
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCC-CHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNI-NVEEMFM 137 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~-~v~~~f~ 137 (177)
++|++++.||+.+. |+..+........++|++|||||+|+...+.++.+++..+++..+++|+++||++|. ||+++|.
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~ 157 (165)
T cd04146 78 VYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFH 157 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHH
Confidence 58999999999997 887764322213479999999999998778899999999999999999999999995 9999999
Q ss_pred HHHHHHH
Q psy1416 138 AITNLVL 144 (177)
Q Consensus 138 ~~~~~~~ 144 (177)
.+++.+.
T Consensus 158 ~l~~~~~ 164 (165)
T cd04146 158 ELCREVR 164 (165)
T ss_pred HHHHHHh
Confidence 9998764
No 48
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.63 E-value=1e-15 Score=115.44 Aligned_cols=82 Identities=21% Similarity=0.291 Sum_probs=69.8
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|++++.||.++. |+.++... .+++|++|||||+||.. +.+..+. ..+++..++.||||||++|.||+++|..
T Consensus 74 V~D~t~~~S~~~i~~w~~~i~~~---~~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~ 148 (200)
T smart00176 74 MFDVTARVTYKNVPNWHRDLVRV---CENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLW 148 (200)
T ss_pred EEECCChHHHHHHHHHHHHHHHh---CCCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 58999999999997 99887432 24799999999999964 4566554 4788889999999999999999999999
Q ss_pred HHHHHHHH
Q psy1416 139 ITNLVLRS 146 (177)
Q Consensus 139 ~~~~~~~~ 146 (177)
+++.+.+.
T Consensus 149 l~~~i~~~ 156 (200)
T smart00176 149 LARKLIGD 156 (200)
T ss_pred HHHHHHhc
Confidence 99998765
No 49
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.62 E-value=1.1e-15 Score=114.99 Aligned_cols=88 Identities=14% Similarity=0.023 Sum_probs=73.6
Q ss_pred ccccchhhhhcccc-hhhhhhhhhc-cCCCCcEEEEeeCCCCcCCCccCHHHHHHHHH-HcCCcEEEecCCCCCCHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYC-WLFPSGLRLVGNKNDDPQKKVVLTEDAQRFAN-QMGIQLFETSAKDNINVEEMF 136 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~-~~~~~~~e~Sak~~~~v~~~f 136 (177)
++|+++++||+.+. |++.+..... ...++|++|||||+||...+.+..+++..++. .++++||+|||++|.||+++|
T Consensus 87 v~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf 166 (198)
T cd04142 87 VYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLF 166 (198)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHH
Confidence 59999999999997 8876643221 23579999999999998778888888887765 568999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1416 137 MAITNLVLRSK 147 (177)
Q Consensus 137 ~~~~~~~~~~~ 147 (177)
..+++.++...
T Consensus 167 ~~i~~~~~~~~ 177 (198)
T cd04142 167 KELLISATTRG 177 (198)
T ss_pred HHHHHHhhccC
Confidence 99999888654
No 50
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.62 E-value=2.2e-15 Score=111.79 Aligned_cols=87 Identities=25% Similarity=0.283 Sum_probs=73.8
Q ss_pred ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCC----CccCHHHHHHHHHHcCC-cEEEecCCCCCCH
Q psy1416 60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQK----KVVLTEDAQRFANQMGI-QLFETSAKDNINV 132 (177)
Q Consensus 60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~----~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v 132 (177)
++|+++++||+++. |+..+.. ..+++|++|||||.||... +.+..+++.+++..++. +|+++||++|.||
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 155 (187)
T cd04132 79 CYAVDNPTSLDNVEDKWFPEVNH---FCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENV 155 (187)
T ss_pred EEECCCHHHHHHHHHHHHHHHHH---hCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCH
Confidence 48999999999994 9876632 1347899999999999653 46788999999999998 8999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1416 133 EEMFMAITNLVLRSKKE 149 (177)
Q Consensus 133 ~~~f~~~~~~~~~~~~~ 149 (177)
+++|..+++.+......
T Consensus 156 ~~~f~~l~~~~~~~~~~ 172 (187)
T cd04132 156 EEVFDTAIEEALKKEGK 172 (187)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 99999999999876533
No 51
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.62 E-value=1.5e-15 Score=110.62 Aligned_cols=82 Identities=28% Similarity=0.296 Sum_probs=70.6
Q ss_pred ccccchhhhhcccc-hhhhhhhhhcc-CCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCW-LFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~ 137 (177)
++|+++++||.++. |+..+...... .+++|++|||||+|+...+.+..+++..++..+++.|+|+||++|.||+++|.
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~ 158 (165)
T cd04140 79 VYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQ 158 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Confidence 59999999999997 88766433322 25799999999999987788888899999999999999999999999999999
Q ss_pred HHHH
Q psy1416 138 AITN 141 (177)
Q Consensus 138 ~~~~ 141 (177)
.|+.
T Consensus 159 ~l~~ 162 (165)
T cd04140 159 ELLN 162 (165)
T ss_pred HHHh
Confidence 9874
No 52
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.62 E-value=2.1e-15 Score=110.07 Aligned_cols=84 Identities=35% Similarity=0.453 Sum_probs=74.3
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|++++.||..+. |+..+... ...++|++|||||+||.+.+.+..+++..+++.++.+|+++||++|.||+++|..
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 159 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH--ASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFT 159 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh--CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 48999999999997 99877432 2357899999999999888888999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy1416 139 ITNLVLR 145 (177)
Q Consensus 139 ~~~~~~~ 145 (177)
+++.+..
T Consensus 160 i~~~~~~ 166 (167)
T cd01867 160 LAKDIKK 166 (167)
T ss_pred HHHHHHh
Confidence 9998864
No 53
>KOG0095|consensus
Probab=99.61 E-value=3e-16 Score=110.58 Aligned_cols=88 Identities=23% Similarity=0.307 Sum_probs=77.5
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
.+||+-..||+.+- |+.+++ .+.. ..+-.||||||+|+.++|.|....+++|++.+.+.|.|||||...||+.+|.+
T Consensus 86 vydiscqpsfdclpewlreie-~yan-~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~ 163 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIE-QYAN-NKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLD 163 (213)
T ss_pred EEecccCcchhhhHHHHHHHH-HHhh-cceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHH
Confidence 38999999999997 999985 3332 46778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1416 139 ITNLVLRSKKE 149 (177)
Q Consensus 139 ~~~~~~~~~~~ 149 (177)
++-++....+.
T Consensus 164 ~a~rli~~ar~ 174 (213)
T KOG0095|consen 164 LACRLISEARQ 174 (213)
T ss_pred HHHHHHHHHHh
Confidence 99888776543
No 54
>PLN03118 Rab family protein; Provisional
Probab=99.61 E-value=5.7e-15 Score=111.96 Aligned_cols=86 Identities=26% Similarity=0.307 Sum_probs=73.7
Q ss_pred ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416 60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137 (177)
Q Consensus 60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~ 137 (177)
+.|+++++||..+. |...+. ......+.|++|||||+||...+.++.+++..++..+++.|+|+||++|.||+++|.
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~-~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~ 170 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVE-LYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFE 170 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHH-HhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 48999999999995 766553 222234689999999999988788888999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 138 AITNLVLRS 146 (177)
Q Consensus 138 ~~~~~~~~~ 146 (177)
.+++.+...
T Consensus 171 ~l~~~~~~~ 179 (211)
T PLN03118 171 ELALKIMEV 179 (211)
T ss_pred HHHHHHHhh
Confidence 999999765
No 55
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.61 E-value=2.6e-15 Score=109.33 Aligned_cols=84 Identities=31% Similarity=0.498 Sum_probs=73.3
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++++||+.+. |+..+... ....+|++|||||+||...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 157 (165)
T cd01865 80 MYDITNEESFNAVQDWSTQIKTY--SWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFER 157 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 58999999999997 99877322 2247899999999999888888889999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy1416 139 ITNLVLR 145 (177)
Q Consensus 139 ~~~~~~~ 145 (177)
+++.+.+
T Consensus 158 l~~~~~~ 164 (165)
T cd01865 158 LVDIICD 164 (165)
T ss_pred HHHHHHh
Confidence 9987654
No 56
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.61 E-value=1.3e-15 Score=112.28 Aligned_cols=80 Identities=15% Similarity=0.211 Sum_probs=68.4
Q ss_pred ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcCC-cEEEe
Q psy1416 60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMGI-QLFET 124 (177)
Q Consensus 60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~e~ 124 (177)
++|+++++||.++ . |+..+... .+++|++|||||+||... +.|+.+++..++++++. .|+|+
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~---~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 155 (174)
T cd01871 79 CFSLVSPASFENVRAKWYPEVRHH---CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 155 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEe
Confidence 4999999999999 4 98766322 247999999999999643 46899999999999985 89999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q psy1416 125 SAKDNINVEEMFMAITNL 142 (177)
Q Consensus 125 Sak~~~~v~~~f~~~~~~ 142 (177)
||++|.||+++|..+++.
T Consensus 156 Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 156 SALTQKGLKTVFDEAIRA 173 (174)
T ss_pred cccccCCHHHHHHHHHHh
Confidence 999999999999999864
No 57
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.60 E-value=2.3e-15 Score=112.03 Aligned_cols=84 Identities=24% Similarity=0.245 Sum_probs=70.8
Q ss_pred ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcC----------CCccCHHHHHHHHHHcCC-cEEEecC
Q psy1416 60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQ----------KKVVLTEDAQRFANQMGI-QLFETSA 126 (177)
Q Consensus 60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~----------~~~v~~~~~~~~a~~~~~-~~~e~Sa 126 (177)
++|+++.+||..+. |+..+... .+++|++|||||+||.. .+.++.+++..+++.++. .||||||
T Consensus 79 v~~i~~~~s~~~~~~~~~~~i~~~---~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 155 (187)
T cd04129 79 GFAVDTPDSLENVRTKWIEEVRRY---CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSA 155 (187)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccC
Confidence 48999999999994 98877422 24699999999999954 466788899999999985 7999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q psy1416 127 KDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 127 k~~~~v~~~f~~~~~~~~~~ 146 (177)
++|.||+++|..+++.++.-
T Consensus 156 ~~~~~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 156 LTGEGVDDVFEAATRAALLV 175 (187)
T ss_pred CCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999877543
No 58
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.60 E-value=7.5e-15 Score=109.51 Aligned_cols=85 Identities=24% Similarity=0.322 Sum_probs=72.1
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcC----CCccCHHHHHHHHHHcCCcEEEecCCCCCCHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQ----KKVVLTEDAQRFANQMGIQLFETSAKDNINVEE 134 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~----~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~ 134 (177)
+.|++++.||+++. |+..+... .+++|++|||||+||.. .+.+..+++..++..++++|+++||++|.||++
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 156 (193)
T cd04118 80 CYDLTDSSSFERAKFWVKELQNL---EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDE 156 (193)
T ss_pred EEECCCHHHHHHHHHHHHHHHhc---CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 48999999999987 99877422 24789999999999853 356777888899999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1416 135 MFMAITNLVLRSK 147 (177)
Q Consensus 135 ~f~~~~~~~~~~~ 147 (177)
+|..+++.+.+..
T Consensus 157 l~~~i~~~~~~~~ 169 (193)
T cd04118 157 LFQKVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999997653
No 59
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.59 E-value=4e-15 Score=108.23 Aligned_cols=83 Identities=34% Similarity=0.440 Sum_probs=73.4
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|+++++||..+. |+..+.... .+++|+++||||+|+...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 158 (166)
T cd01869 81 VYDVTDQESFNNVKQWLQEIDRYA--SENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMT 158 (166)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHH
Confidence 48999999999997 998774221 247899999999999888888999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy1416 139 ITNLVL 144 (177)
Q Consensus 139 ~~~~~~ 144 (177)
+++.+.
T Consensus 159 i~~~~~ 164 (166)
T cd01869 159 MAREIK 164 (166)
T ss_pred HHHHHH
Confidence 998775
No 60
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.59 E-value=3.6e-15 Score=107.82 Aligned_cols=83 Identities=29% Similarity=0.349 Sum_probs=71.5
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|++++.||+.+. |+..+... ....++|++|||||+||...+.++.+++..+++.++.+|+++||++|.||+++|..
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd04136 79 VYSITSQSSFNDLQDLREQILRV-KDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFAD 157 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 47999999999997 98777432 22357899999999999877788888899999999999999999999999999999
Q ss_pred HHHHH
Q psy1416 139 ITNLV 143 (177)
Q Consensus 139 ~~~~~ 143 (177)
+++.+
T Consensus 158 l~~~~ 162 (163)
T cd04136 158 LVRQI 162 (163)
T ss_pred HHHhc
Confidence 98754
No 61
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.59 E-value=3.9e-15 Score=108.05 Aligned_cols=83 Identities=29% Similarity=0.312 Sum_probs=71.9
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+... ....++|++|||||+||...+.++.+++..+++.++++|+++||++|.||+++|..
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 157 (164)
T cd04175 79 VYSITAQSTFNDLQDLREQILRV-KDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYD 157 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 48999999999997 88776422 22357999999999999888888888889999999999999999999999999999
Q ss_pred HHHHH
Q psy1416 139 ITNLV 143 (177)
Q Consensus 139 ~~~~~ 143 (177)
+++.+
T Consensus 158 l~~~l 162 (164)
T cd04175 158 LVRQI 162 (164)
T ss_pred HHHHh
Confidence 98765
No 62
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.58 E-value=2.6e-15 Score=109.90 Aligned_cols=82 Identities=22% Similarity=0.272 Sum_probs=70.3
Q ss_pred ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcCC-cEEEe
Q psy1416 60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMGI-QLFET 124 (177)
Q Consensus 60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~e~ 124 (177)
++|+++++||+++. |+..+... .+++|++|||||+||... +.|+.+++..+++.++. .|+|+
T Consensus 76 v~d~~~~~s~~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 152 (174)
T smart00174 76 CFSVDSPASFENVKEKWYPEVKHF---CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLEC 152 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh---CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEe
Confidence 47999999999983 98876422 247999999999999653 34888999999999996 89999
Q ss_pred cCCCCCCHHHHHHHHHHHHH
Q psy1416 125 SAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 125 Sak~~~~v~~~f~~~~~~~~ 144 (177)
||++|.||+++|..+++.++
T Consensus 153 Sa~~~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 153 SALTQEGVREVFEEAIRAAL 172 (174)
T ss_pred cCCCCCCHHHHHHHHHHHhc
Confidence 99999999999999998875
No 63
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.58 E-value=4.4e-15 Score=110.30 Aligned_cols=84 Identities=19% Similarity=0.225 Sum_probs=67.3
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcC-----CCccCHHHHHHHHHHcCCcEEEecCCCCCCHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQ-----KKVVLTEDAQRFANQMGIQLFETSAKDNINVE 133 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~-----~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~ 133 (177)
++|+++++||.++. |+..+.... ...+| +|||||+||.. .+.+..+++..+++.++++|+++||++|.||+
T Consensus 79 v~D~t~~~s~~~i~~~~~~~~~~~--~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~ 155 (182)
T cd04128 79 MFDLTRKSTLNSIKEWYRQARGFN--KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQ 155 (182)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC--CCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 49999999999997 998774321 23466 68999999942 22223567888999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1416 134 EMFMAITNLVLRS 146 (177)
Q Consensus 134 ~~f~~~~~~~~~~ 146 (177)
++|..+++.+.+.
T Consensus 156 ~lf~~l~~~l~~~ 168 (182)
T cd04128 156 KIFKIVLAKAFDL 168 (182)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988753
No 64
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.58 E-value=6.6e-15 Score=112.58 Aligned_cols=87 Identities=22% Similarity=0.200 Sum_probs=75.3
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|++++.||.++. |+..+... ....++|++|||||+||...+.|+.+++..++..++++|+|+||++|.||+++|..
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~-~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~ 157 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRN-RQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEG 157 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 48999999999997 98776422 22357999999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 139 ITNLVLRSK 147 (177)
Q Consensus 139 ~~~~~~~~~ 147 (177)
+++.+....
T Consensus 158 l~~~~~~~~ 166 (221)
T cd04148 158 IVRQIRLRR 166 (221)
T ss_pred HHHHHHhhh
Confidence 999886543
No 65
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.57 E-value=7.2e-15 Score=106.40 Aligned_cols=85 Identities=21% Similarity=0.259 Sum_probs=73.2
Q ss_pred ccccchhhhhcccc-hhhhhhhhhcc---CCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCW---LFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEM 135 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~---~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~ 135 (177)
++|++++.||..+. |+.++...... ..++|+++||||+|+..++.+..+++..++..++++|+++||++|.||+++
T Consensus 79 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 158 (168)
T cd04119 79 VYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEM 158 (168)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 48999999999997 99877432221 246899999999999867778899999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 136 FMAITNLVL 144 (177)
Q Consensus 136 f~~~~~~~~ 144 (177)
|..+++.++
T Consensus 159 ~~~l~~~l~ 167 (168)
T cd04119 159 FQTLFSSIV 167 (168)
T ss_pred HHHHHHHHh
Confidence 999998875
No 66
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.57 E-value=5.7e-15 Score=112.79 Aligned_cols=83 Identities=22% Similarity=0.276 Sum_probs=70.1
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|++++.||.++. |+..+... .+++|++|||||+||.. +.+..+++ .+++..++.||||||++|.||+++|..
T Consensus 92 vfD~~~~~s~~~i~~w~~~i~~~---~~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~ 166 (219)
T PLN03071 92 MFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY 166 (219)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHh---CCCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHH
Confidence 48999999999997 99877422 35799999999999964 45666665 788888999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 139 ITNLVLRSK 147 (177)
Q Consensus 139 ~~~~~~~~~ 147 (177)
+++.+.+..
T Consensus 167 l~~~~~~~~ 175 (219)
T PLN03071 167 LARKLAGDP 175 (219)
T ss_pred HHHHHHcCc
Confidence 999987653
No 67
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.57 E-value=7.7e-15 Score=106.31 Aligned_cols=83 Identities=24% Similarity=0.278 Sum_probs=71.2
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|++++.||.++. |+..+.... ...++|++|||||+|+...+.+...++..++..++.+|+++||++|.||+++|..
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd04176 79 VYSLVNQQTFQDIKPMRDQIVRVK-GYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAE 157 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHH
Confidence 48999999999997 987764322 2257899999999999877788888899999988999999999999999999999
Q ss_pred HHHHH
Q psy1416 139 ITNLV 143 (177)
Q Consensus 139 ~~~~~ 143 (177)
+++.+
T Consensus 158 l~~~l 162 (163)
T cd04176 158 IVRQM 162 (163)
T ss_pred HHHhc
Confidence 98754
No 68
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.56 E-value=9.6e-15 Score=106.88 Aligned_cols=83 Identities=37% Similarity=0.461 Sum_probs=73.0
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCC---CCCHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKD---NINVEEM 135 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~---~~~v~~~ 135 (177)
++|++++.||..+. |+..+.. .....++|++|||||+||...+.++.+++..+++.++++|+|+||++ +.+|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQ-HSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHH-hcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence 59999999999997 9987742 22235799999999999998888999999999999999999999999 9999999
Q ss_pred HHHHHHHH
Q psy1416 136 FMAITNLV 143 (177)
Q Consensus 136 f~~~~~~~ 143 (177)
|..+++.+
T Consensus 161 f~~l~~~~ 168 (170)
T cd04115 161 FMTLAHKL 168 (170)
T ss_pred HHHHHHHh
Confidence 99998765
No 69
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.56 E-value=1.4e-14 Score=105.81 Aligned_cols=84 Identities=26% Similarity=0.343 Sum_probs=74.0
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|++++.||..+. |+..+.... .+++|++|||||.|+...+.++.+++..++..+++.|+|+||+++.||+++|..
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~ 160 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHS--NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFIN 160 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 58999999999997 998774222 357999999999999877788999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy1416 139 ITNLVLR 145 (177)
Q Consensus 139 ~~~~~~~ 145 (177)
+++.+.+
T Consensus 161 ~~~~~~~ 167 (168)
T cd01866 161 TAKEIYE 167 (168)
T ss_pred HHHHHHh
Confidence 9988764
No 70
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.55 E-value=1.6e-14 Score=104.51 Aligned_cols=83 Identities=28% Similarity=0.334 Sum_probs=71.5
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+... ....++|++|||||+||...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 158 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRV-KDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHD 158 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHH-hCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHH
Confidence 48999999999997 98776422 22347899999999999887888888899999999999999999999999999999
Q ss_pred HHHHH
Q psy1416 139 ITNLV 143 (177)
Q Consensus 139 ~~~~~ 143 (177)
+++.+
T Consensus 159 l~~~~ 163 (164)
T cd04145 159 LVRVI 163 (164)
T ss_pred HHHhh
Confidence 98764
No 71
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.55 E-value=1.8e-14 Score=105.76 Aligned_cols=85 Identities=22% Similarity=0.259 Sum_probs=70.1
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCc--cCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKV--VLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~--v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f 136 (177)
+.|+++++||.++. |+..+.... .+..+|++|||||+||...+. +..+++..++++++++|+++||++|.||+++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 79 VFDLTDVASLEHTRQWLEDALKEN-DPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFF 157 (170)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhc-CCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 47999999999998 998763222 224678999999999965443 45678888999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 137 MAITNLVLR 145 (177)
Q Consensus 137 ~~~~~~~~~ 145 (177)
..+++.+.+
T Consensus 158 ~~l~~~~~~ 166 (170)
T cd04108 158 FRVAALTFE 166 (170)
T ss_pred HHHHHHHHH
Confidence 999988754
No 72
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.55 E-value=1.6e-14 Score=104.63 Aligned_cols=84 Identities=27% Similarity=0.325 Sum_probs=71.8
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++++||..+. |...+.... ...+.|+++||||+|+...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus 78 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 156 (164)
T smart00173 78 VYSITDRQSFEEIKKFREQILRVK-DRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYD 156 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHH
Confidence 58899999999997 876663222 2247899999999999887888888999999999999999999999999999999
Q ss_pred HHHHHH
Q psy1416 139 ITNLVL 144 (177)
Q Consensus 139 ~~~~~~ 144 (177)
+++.+.
T Consensus 157 l~~~~~ 162 (164)
T smart00173 157 LVREIR 162 (164)
T ss_pred HHHHHh
Confidence 998764
No 73
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.54 E-value=2.5e-14 Score=103.84 Aligned_cols=82 Identities=30% Similarity=0.371 Sum_probs=71.6
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||.++. |+..+.... ..++|++|||||+|+...+.+..++...++..+++.|+++||++|.||+++|..
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 159 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHA--DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQ 159 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 47999999999998 998774222 236899999999999888888899999999999999999999999999999999
Q ss_pred HHHHH
Q psy1416 139 ITNLV 143 (177)
Q Consensus 139 ~~~~~ 143 (177)
++..+
T Consensus 160 l~~~i 164 (165)
T cd01868 160 LLTEI 164 (165)
T ss_pred HHHHh
Confidence 98765
No 74
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.53 E-value=2.3e-14 Score=103.58 Aligned_cols=80 Identities=25% Similarity=0.326 Sum_probs=70.5
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|+++++||..+. |+..+.. ...++|++|||||+|+..++.++.+++..+++.++++|+++||++|.|++++|..
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 157 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEA---ECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEY 157 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHH---hCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 48999999999997 9887632 2247999999999999888888999999999999999999999999999999999
Q ss_pred HHHH
Q psy1416 139 ITNL 142 (177)
Q Consensus 139 ~~~~ 142 (177)
++..
T Consensus 158 l~~~ 161 (162)
T cd04106 158 LAEK 161 (162)
T ss_pred HHHh
Confidence 8753
No 75
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.53 E-value=3e-14 Score=103.98 Aligned_cols=82 Identities=29% Similarity=0.301 Sum_probs=69.1
Q ss_pred ccccchhhhhcccc-hhhhhhhhhc--cCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCCHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYC--WLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEM 135 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~--~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~ 135 (177)
++|+++++||..+. |+..+..... ...++|++|||||+||. .+.++.+++.+++++++. .|+++||++|.||+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 162 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAA 162 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHH
Confidence 48999999999997 9876632221 12478999999999997 577889999999999884 7999999999999999
Q ss_pred HHHHHHH
Q psy1416 136 FMAITNL 142 (177)
Q Consensus 136 f~~~~~~ 142 (177)
|..+++.
T Consensus 163 ~~~~~~~ 169 (170)
T cd04116 163 FEEAVRR 169 (170)
T ss_pred HHHHHhh
Confidence 9999875
No 76
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.52 E-value=3.4e-14 Score=103.24 Aligned_cols=81 Identities=28% Similarity=0.382 Sum_probs=70.5
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEMFM 137 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~f~ 137 (177)
++|++++.||..+. |+..+... ...++|++|||||+|+...+.+..+++..+++..+. .|+|+||++|.||+++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~ 159 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKY--GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFL 159 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh--CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence 58999999999997 99877422 235789999999999988888888999999999886 689999999999999999
Q ss_pred HHHHH
Q psy1416 138 AITNL 142 (177)
Q Consensus 138 ~~~~~ 142 (177)
.+++.
T Consensus 160 ~l~~~ 164 (165)
T cd01864 160 LMATE 164 (165)
T ss_pred HHHHh
Confidence 99875
No 77
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.52 E-value=3.2e-14 Score=103.96 Aligned_cols=81 Identities=23% Similarity=0.295 Sum_probs=67.5
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|+++.+||.++. |+..+.... .++|++|||||+||.. +.+.. ++..+++..++.|||+||++|.||+++|..
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~---~~~piiiv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 79 MFDVTSRVTYKNVPNWHRDLVRVC---GNIPIVLCGNKVDIKD-RKVKA-KQITFHRKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhccc-ccCCH-HHHHHHHHcCCEEEEEeCCCCCChHHHHHH
Confidence 59999999999997 998874322 2799999999999973 44443 456778888889999999999999999999
Q ss_pred HHHHHHH
Q psy1416 139 ITNLVLR 145 (177)
Q Consensus 139 ~~~~~~~ 145 (177)
|++.+.+
T Consensus 154 l~~~~~~ 160 (166)
T cd00877 154 LARKLLG 160 (166)
T ss_pred HHHHHHh
Confidence 9998875
No 78
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.51 E-value=4.2e-14 Score=102.24 Aligned_cols=82 Identities=29% Similarity=0.378 Sum_probs=71.9
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||.++. |+..+... ..+++|++|||||.|+...+.+..+++..++...+..|+++||+++.||+++|..
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 156 (161)
T cd04113 79 VYDITNRTSFEALPTWLSDARAL--ASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLK 156 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 58999999999997 98776322 2357899999999999887888999999999999999999999999999999999
Q ss_pred HHHHH
Q psy1416 139 ITNLV 143 (177)
Q Consensus 139 ~~~~~ 143 (177)
+++.+
T Consensus 157 ~~~~~ 161 (161)
T cd04113 157 CARSI 161 (161)
T ss_pred HHHhC
Confidence 98753
No 79
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.51 E-value=6.7e-14 Score=100.70 Aligned_cols=82 Identities=26% Similarity=0.259 Sum_probs=68.9
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|++++.||.++. |+..+... ....++|++|||||+|+.. +.+..+++..+++..+++|+++||++|.||+++|..
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~-~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 156 (162)
T cd04138 79 VFAINSRKSFEDIHTYREQIKRV-KDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYT 156 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHH
Confidence 47899999999997 88766422 2234789999999999976 567788899999999999999999999999999999
Q ss_pred HHHHH
Q psy1416 139 ITNLV 143 (177)
Q Consensus 139 ~~~~~ 143 (177)
+++.+
T Consensus 157 l~~~~ 161 (162)
T cd04138 157 LVREI 161 (162)
T ss_pred HHHHh
Confidence 98754
No 80
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.50 E-value=4.7e-14 Score=103.24 Aligned_cols=81 Identities=21% Similarity=0.252 Sum_probs=69.0
Q ss_pred ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcCC-cEEEe
Q psy1416 60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMGI-QLFET 124 (177)
Q Consensus 60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~e~ 124 (177)
+.|+++++||+.+. |+..+... .+++|++|||||+||.+. +.|+.+++..+++..+. .|+|+
T Consensus 78 v~~~~~~~s~~~~~~~~~~~l~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 154 (174)
T cd04135 78 CFSVVNPASFQNVKEEWVPELKEY---APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVEC 154 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh---CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 57899999999994 88776322 357999999999999643 46888999999999986 79999
Q ss_pred cCCCCCCHHHHHHHHHHHH
Q psy1416 125 SAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 125 Sak~~~~v~~~f~~~~~~~ 143 (177)
||++|.||+++|..+++.+
T Consensus 155 Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 155 SALTQKGLKTVFDEAILAI 173 (174)
T ss_pred cCCcCCCHHHHHHHHHHHh
Confidence 9999999999999999876
No 81
>KOG0393|consensus
Probab=99.50 E-value=2.4e-14 Score=106.43 Aligned_cols=84 Identities=23% Similarity=0.304 Sum_probs=73.8
Q ss_pred ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcC-CcEEEe
Q psy1416 60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMG-IQLFET 124 (177)
Q Consensus 60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~-~~~~e~ 124 (177)
|.+|.+++||+++. |+.++. ..++++|+||||+|.||.++ ..|+.+++..+|++.| ..|+|+
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~---~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIK---HHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHH---hhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 68999999999995 987663 34479999999999999743 3689999999999999 579999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHH
Q psy1416 125 SAKDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 125 Sak~~~~v~~~f~~~~~~~~~~ 146 (177)
||++..||.++|...++.++..
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~~ 181 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALRP 181 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhcc
Confidence 9999999999999999988764
No 82
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.50 E-value=8e-14 Score=100.97 Aligned_cols=81 Identities=30% Similarity=0.377 Sum_probs=70.4
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++++||..+. |+..+.... .++|++|||||+|+...+.+...++..++..++++|+++||++|.||+++|..
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 158 (164)
T cd04101 82 VYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFES 158 (164)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHH
Confidence 48999999999997 987764222 46899999999999877788888888888888999999999999999999999
Q ss_pred HHHHH
Q psy1416 139 ITNLV 143 (177)
Q Consensus 139 ~~~~~ 143 (177)
+++.+
T Consensus 159 l~~~~ 163 (164)
T cd04101 159 LARAF 163 (164)
T ss_pred HHHHh
Confidence 99865
No 83
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.50 E-value=8.2e-14 Score=101.68 Aligned_cols=84 Identities=29% Similarity=0.358 Sum_probs=72.7
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC-CcEEEecCCCCCCHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFM 137 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~~f~ 137 (177)
+.|+++++||+++. |...+... ....++|+++||||.|+...+.++.+++..+++.++ ++|+++||++|.||+++|.
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~-~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~ 157 (168)
T cd04177 79 VYSVTSEASLNELGELREQVLRI-KDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFI 157 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-hCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHH
Confidence 58899999999997 98777432 223579999999999998888888889999999988 8899999999999999999
Q ss_pred HHHHHHH
Q psy1416 138 AITNLVL 144 (177)
Q Consensus 138 ~~~~~~~ 144 (177)
.+++.++
T Consensus 158 ~i~~~~~ 164 (168)
T cd04177 158 DLVRQII 164 (168)
T ss_pred HHHHHHh
Confidence 9998764
No 84
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.49 E-value=7.9e-14 Score=102.30 Aligned_cols=79 Identities=23% Similarity=0.288 Sum_probs=67.2
Q ss_pred ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcC------------CCccCHHHHHHHHHHcCC-cEEEe
Q psy1416 60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQ------------KKVVLTEDAQRFANQMGI-QLFET 124 (177)
Q Consensus 60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~------------~~~v~~~~~~~~a~~~~~-~~~e~ 124 (177)
+.|+++++||.++ . |+..+... .+++|++|||||+||.. ++.|+.+++..+++..+. .|+|+
T Consensus 78 v~d~~~~~sf~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~ 154 (173)
T cd04130 78 CFSVVNPSSFQNISEKWIPEIRKH---NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIEC 154 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh---CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEE
Confidence 4799999999998 3 98766321 24689999999999963 567899999999999998 89999
Q ss_pred cCCCCCCHHHHHHHHHH
Q psy1416 125 SAKDNINVEEMFMAITN 141 (177)
Q Consensus 125 Sak~~~~v~~~f~~~~~ 141 (177)
||++|.||+++|..++.
T Consensus 155 Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 155 SALTQKNLKEVFDTAIL 171 (173)
T ss_pred eCCCCCCHHHHHHHHHh
Confidence 99999999999988764
No 85
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.47 E-value=1.4e-13 Score=106.94 Aligned_cols=84 Identities=23% Similarity=0.222 Sum_probs=69.8
Q ss_pred ccccchhhhhcccc-hhhhhhhhhc-------cCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHH-cCCcEEEecCCCCC
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYC-------WLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ-MGIQLFETSAKDNI 130 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~-------~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~-~~~~~~e~Sak~~~ 130 (177)
++|+++++||+++. |+.++..... ...++|+||||||+||...+.+..+++.+++.. .++.|+++||++|.
T Consensus 78 Vfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~ 157 (247)
T cd04143 78 VFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNS 157 (247)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCC
Confidence 58999999999997 8877743211 224789999999999987778888888888764 46789999999999
Q ss_pred CHHHHHHHHHHHH
Q psy1416 131 NVEEMFMAITNLV 143 (177)
Q Consensus 131 ~v~~~f~~~~~~~ 143 (177)
||+++|..++..+
T Consensus 158 gI~elf~~L~~~~ 170 (247)
T cd04143 158 NLDEMFRALFSLA 170 (247)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999865
No 86
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.45 E-value=2.9e-13 Score=97.77 Aligned_cols=84 Identities=33% Similarity=0.449 Sum_probs=73.2
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||+.+. |+..+..... +++|+++|+||+|+...+.+..+.+..+++.++++|+|+||++|.|++++|..
T Consensus 79 v~d~~~~~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~ 156 (164)
T smart00175 79 VYDITNRESFENLKNWLKELREYAD--PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEE 156 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 48899999999987 9987743221 47999999999999877778889999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy1416 139 ITNLVLR 145 (177)
Q Consensus 139 ~~~~~~~ 145 (177)
+++.+.+
T Consensus 157 i~~~~~~ 163 (164)
T smart00175 157 LAREILK 163 (164)
T ss_pred HHHHHhh
Confidence 9988764
No 87
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.44 E-value=4e-13 Score=96.90 Aligned_cols=84 Identities=29% Similarity=0.288 Sum_probs=70.3
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||.++. |+..+..... ..++|+++|+||+|+...+.+..++...++..++.+|+++||++|.||+++|..
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 156 (164)
T cd04139 78 VFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYD 156 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHH
Confidence 47889999999997 7766532222 357999999999999775667788888899999999999999999999999999
Q ss_pred HHHHHH
Q psy1416 139 ITNLVL 144 (177)
Q Consensus 139 ~~~~~~ 144 (177)
+++.+.
T Consensus 157 l~~~~~ 162 (164)
T cd04139 157 LVREIR 162 (164)
T ss_pred HHHHHH
Confidence 988765
No 88
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.41 E-value=6.3e-13 Score=96.44 Aligned_cols=81 Identities=25% Similarity=0.286 Sum_probs=67.0
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|++++.||.++. |+..+.. . .+++|++|||||+||... + .+++..+++.++++++++||++|.||+++|..
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~-~--~~~~p~ivv~nK~Dl~~~--~-~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 79 VFDVTRKITYKNLSKWYEELRE-Y--RPEIPCIVVANKIDLDPS--V-TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHH-h--CCCCcEEEEEECccCchh--H-HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 58999999999997 9987742 1 247899999999999532 2 35566788888899999999999999999999
Q ss_pred HHHHHHHH
Q psy1416 139 ITNLVLRS 146 (177)
Q Consensus 139 ~~~~~~~~ 146 (177)
+++.++++
T Consensus 153 l~~~~~~~ 160 (161)
T cd04124 153 AIKLAVSY 160 (161)
T ss_pred HHHHHHhc
Confidence 99988764
No 89
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.41 E-value=8.3e-13 Score=96.08 Aligned_cols=82 Identities=24% Similarity=0.289 Sum_probs=69.7
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+... ...++|+++||||+|+...+.+..+.+..+.+.....++++||++|.|++++|..
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~--~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 163 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQY--ANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD 163 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHh--CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence 47999999999987 98766322 2246899999999999877888888888888888889999999999999999999
Q ss_pred HHHHH
Q psy1416 139 ITNLV 143 (177)
Q Consensus 139 ~~~~~ 143 (177)
+++.+
T Consensus 164 i~~~~ 168 (169)
T cd04114 164 LACRL 168 (169)
T ss_pred HHHHh
Confidence 99765
No 90
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.40 E-value=8.2e-13 Score=95.28 Aligned_cols=81 Identities=30% Similarity=0.342 Sum_probs=70.2
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|+++++||..+. |+..+.... ..++|++|||||+|+...+.+..++...+++..++.++++||++|.|++++|..
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 156 (161)
T cd01861 79 VYDITNRQSFDNTDKWIDDVRDER--GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRK 156 (161)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 48999999999997 998764222 237999999999999777778889999999999999999999999999999999
Q ss_pred HHHH
Q psy1416 139 ITNL 142 (177)
Q Consensus 139 ~~~~ 142 (177)
+++.
T Consensus 157 i~~~ 160 (161)
T cd01861 157 IASA 160 (161)
T ss_pred HHHh
Confidence 9864
No 91
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.40 E-value=1e-12 Score=94.52 Aligned_cols=82 Identities=27% Similarity=0.439 Sum_probs=70.9
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|+++.+||..+. |+..+..... .++|+++||||+|+...+.+..++...+++..+..++++||+++.|++++|..
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~ 156 (162)
T cd04123 79 VYDITDADSFQKVKKWIKELKQMRG--NNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLS 156 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 48999999999997 9877743222 37899999999999877788888888899999999999999999999999999
Q ss_pred HHHHH
Q psy1416 139 ITNLV 143 (177)
Q Consensus 139 ~~~~~ 143 (177)
+++.+
T Consensus 157 l~~~~ 161 (162)
T cd04123 157 LAKRM 161 (162)
T ss_pred HHHHh
Confidence 98765
No 92
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.39 E-value=1.5e-12 Score=94.01 Aligned_cols=82 Identities=34% Similarity=0.425 Sum_probs=71.7
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|.++.+||..+. |+..+.... .+.+|+++|+||+|+...+.+..++...++..++..++++||++|.|++++|..
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd01860 80 VYDITSEESFEKAKSWVKELQRNA--SPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTE 157 (163)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 48889999999997 998774322 257999999999999877778888999999999999999999999999999999
Q ss_pred HHHHH
Q psy1416 139 ITNLV 143 (177)
Q Consensus 139 ~~~~~ 143 (177)
+++.+
T Consensus 158 l~~~l 162 (163)
T cd01860 158 IAKKL 162 (163)
T ss_pred HHHHh
Confidence 99875
No 93
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.39 E-value=1.2e-12 Score=95.90 Aligned_cols=81 Identities=25% Similarity=0.275 Sum_probs=66.7
Q ss_pred ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcCC-cEEEe
Q psy1416 60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMGI-QLFET 124 (177)
Q Consensus 60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~e~ 124 (177)
+.|+++++||+++. |+..+.+. ..++|++|||||+||... +.+...++..++...+. .|++|
T Consensus 79 v~~~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 155 (175)
T cd01870 79 CFSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMEC 155 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh---CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEe
Confidence 37999999999994 98766321 247899999999998532 45677889999998875 79999
Q ss_pred cCCCCCCHHHHHHHHHHHH
Q psy1416 125 SAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 125 Sak~~~~v~~~f~~~~~~~ 143 (177)
||++|.||+++|..+++.+
T Consensus 156 Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 156 SAKTKEGVREVFEMATRAA 174 (175)
T ss_pred ccccCcCHHHHHHHHHHHh
Confidence 9999999999999998764
No 94
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.38 E-value=1.5e-12 Score=94.05 Aligned_cols=81 Identities=26% Similarity=0.316 Sum_probs=68.9
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|+++..||..+. |+..+. ......++|+++||||+|+. .+.+..++...++...+++|+++||++|.|++++|..
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~-~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 156 (161)
T cd01863 79 VYDVTRRDTFTNLETWLNELE-TYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEE 156 (161)
T ss_pred EEECCCHHHHHhHHHHHHHHH-HhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence 48999999999997 988764 23334579999999999997 3456778899999999999999999999999999999
Q ss_pred HHHH
Q psy1416 139 ITNL 142 (177)
Q Consensus 139 ~~~~ 142 (177)
+++.
T Consensus 157 ~~~~ 160 (161)
T cd01863 157 LVEK 160 (161)
T ss_pred HHHh
Confidence 8865
No 95
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.37 E-value=8.2e-13 Score=96.79 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=67.0
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEMFM 137 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~f~ 137 (177)
+.|++++.||..+. |+..+.. ..++|+++||||+||...+.+...+...+++.+++ .++++||++|.||+++|.
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 84 VYDSSDPKSFSYCAEVYKKYFM----LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT 159 (169)
T ss_pred EEeCCCHHHHHHHHHHHHHhcc----CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence 48999999999996 8865521 13689999999999976666655667788888887 479999999999999999
Q ss_pred HHHHHHH
Q psy1416 138 AITNLVL 144 (177)
Q Consensus 138 ~~~~~~~ 144 (177)
.+++.+.
T Consensus 160 ~l~~~~~ 166 (169)
T cd01892 160 KLATAAQ 166 (169)
T ss_pred HHHHHhh
Confidence 9998875
No 96
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.36 E-value=1.6e-12 Score=95.13 Aligned_cols=84 Identities=11% Similarity=-0.013 Sum_probs=65.0
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC------CcEEEecCCCCCCH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG------IQLFETSAKDNINV 132 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~------~~~~e~Sak~~~~v 132 (177)
++|+++++||..+. |+..+.... ...+.|++|||||+||.. .++.+++..++...+ ..|+++||++|.||
T Consensus 73 V~D~s~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 149 (169)
T cd04158 73 VVDSSHRDRVSEAHSELAKLLTEK-ELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGL 149 (169)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCh-hhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCH
Confidence 48999999999997 887663222 224589999999999964 367777777765332 25889999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1416 133 EEMFMAITNLVLRS 146 (177)
Q Consensus 133 ~~~f~~~~~~~~~~ 146 (177)
+++|..+++.+.+.
T Consensus 150 ~~~f~~l~~~~~~~ 163 (169)
T cd04158 150 YEGLDWLSRQLVAA 163 (169)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999877653
No 97
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.33 E-value=5.9e-12 Score=92.68 Aligned_cols=86 Identities=26% Similarity=0.269 Sum_probs=71.6
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..+|..+. |+..+.... ...+.|++||+||+|+...+.+..++...+++.++.+|+++||+++.||+++|..
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 157 (180)
T cd04137 79 VYSVTSRKSFEVVKVIYDKILDML-GKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFEL 157 (180)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 47889999999997 766553222 2246899999999999877778888888889988999999999999999999999
Q ss_pred HHHHHHHH
Q psy1416 139 ITNLVLRS 146 (177)
Q Consensus 139 ~~~~~~~~ 146 (177)
+++.+...
T Consensus 158 l~~~~~~~ 165 (180)
T cd04137 158 LIEEIEKV 165 (180)
T ss_pred HHHHHHHh
Confidence 99887644
No 98
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.32 E-value=7.4e-12 Score=91.11 Aligned_cols=87 Identities=33% Similarity=0.364 Sum_probs=71.8
Q ss_pred ccccchhhhhcccc-hhhhhhhhhc--cCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC-CcEEEecCCCCCCHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYC--WLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEM 135 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~--~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~~ 135 (177)
++|+++..+|.++. |...+..... ...++|++|||||+|+...+.+..++...+++..+ .+++++||++|.||+++
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 158 (172)
T cd01862 79 VYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQA 158 (172)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHH
Confidence 48899999999997 9876532211 12478999999999998666777888888888887 78999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1416 136 FMAITNLVLRS 146 (177)
Q Consensus 136 f~~~~~~~~~~ 146 (177)
|..+++.+++.
T Consensus 159 ~~~i~~~~~~~ 169 (172)
T cd01862 159 FETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHhc
Confidence 99999988765
No 99
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.32 E-value=5.7e-12 Score=90.39 Aligned_cols=82 Identities=27% Similarity=0.309 Sum_probs=69.4
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|+++.+||..+. |...+.... ....+|+++||||+|+...+.+..+++..++..++.+|+++||+++.||+++|..
T Consensus 77 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 77 VYSITDRESFEEIKGYREQILRVK-DDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Confidence 58999999999987 766553222 1147899999999999877778889999999999999999999999999999999
Q ss_pred HHHH
Q psy1416 139 ITNL 142 (177)
Q Consensus 139 ~~~~ 142 (177)
+++.
T Consensus 156 l~~~ 159 (160)
T cd00876 156 LVRE 159 (160)
T ss_pred HHhh
Confidence 9875
No 100
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.31 E-value=3.2e-12 Score=93.13 Aligned_cols=83 Identities=27% Similarity=0.273 Sum_probs=62.6
Q ss_pred ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccC--HHHHHHHHHHcC--CcEEEecCCCCCCHH
Q psy1416 60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVL--TEDAQRFANQMG--IQLFETSAKDNINVE 133 (177)
Q Consensus 60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~--~~~~~~~a~~~~--~~~~e~Sak~~~~v~ 133 (177)
++|++++.||..+. |+..+.. .. +++|++|||||+|+.+.+... .++...++..++ ..|+++||++|.||+
T Consensus 77 v~d~~~~~s~~~~~~~~~~~i~~-~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 153 (166)
T cd01893 77 VYSVDRPSTLERIRTKWLPLIRR-LG--VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVS 153 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHH-hC--CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHH
Confidence 48999999999983 8876632 22 378999999999997655431 333444444443 379999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1416 134 EMFMAITNLVLR 145 (177)
Q Consensus 134 ~~f~~~~~~~~~ 145 (177)
++|..+++.+..
T Consensus 154 ~lf~~~~~~~~~ 165 (166)
T cd01893 154 EVFYYAQKAVLH 165 (166)
T ss_pred HHHHHHHHHhcC
Confidence 999999987653
No 101
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.30 E-value=3.5e-12 Score=93.42 Aligned_cols=79 Identities=11% Similarity=-0.058 Sum_probs=59.5
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHH-----cCCcEEEecCCCCCCHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ-----MGIQLFETSAKDNINVE 133 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~-----~~~~~~e~Sak~~~~v~ 133 (177)
+.|++++.||.++. |+..+... ....++|++|||||+||.. .++.+++..+... ....++++||++|.||+
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIIND-REMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcC-HhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 58999999999986 77655322 1124689999999999964 3566777665432 22468999999999999
Q ss_pred HHHHHHHH
Q psy1416 134 EMFMAITN 141 (177)
Q Consensus 134 ~~f~~~~~ 141 (177)
++|..|++
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99998864
No 102
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.27 E-value=1.6e-12 Score=94.81 Aligned_cols=79 Identities=18% Similarity=0.050 Sum_probs=62.7
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCH----HHHHHHHHHcCCcEEEecCCC------
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLT----EDAQRFANQMGIQLFETSAKD------ 128 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~----~~~~~~a~~~~~~~~e~Sak~------ 128 (177)
+.|.+++.+|..+. |+..+... .+++|++|||||+|+...+.+.. .++..++++.++.||+|||++
T Consensus 74 V~D~t~~~s~~~~~~~l~~~~~~---~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~ 150 (164)
T cd04162 74 VVDSADSERLPLARQELHQLLQH---PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSR 150 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHhC---CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhH
Confidence 48999999999887 88766321 15799999999999987665432 345667777788999999999
Q ss_pred CCCHHHHHHHHHH
Q psy1416 129 NINVEEMFMAITN 141 (177)
Q Consensus 129 ~~~v~~~f~~~~~ 141 (177)
++||+++|..++.
T Consensus 151 ~~~v~~~~~~~~~ 163 (164)
T cd04162 151 MEAVKDLLSQLIN 163 (164)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998763
No 103
>KOG4252|consensus
Probab=99.27 E-value=5.2e-12 Score=91.79 Aligned_cols=89 Identities=18% Similarity=0.212 Sum_probs=79.5
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
..+.||+.||+.+. |.+.+. ..+.++|.++|-||+||.++.+++..+++.+|+..+..+|.+|+|...||..+|.+
T Consensus 99 VFSTTDr~SFea~~~w~~kv~---~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~Y 175 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEWYNKVQ---KETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAY 175 (246)
T ss_pred EEecccHHHHHHHHHHHHHHH---HHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHH
Confidence 47789999999997 998773 22358999999999999998999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1416 139 ITNLVLRSKKEQK 151 (177)
Q Consensus 139 ~~~~~~~~~~~~~ 151 (177)
|+..+.+++..+.
T Consensus 176 LaeK~~q~~kq~~ 188 (246)
T KOG4252|consen 176 LAEKLTQQKKQSL 188 (246)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998876543
No 104
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.27 E-value=9.5e-12 Score=90.46 Aligned_cols=79 Identities=20% Similarity=0.279 Sum_probs=65.7
Q ss_pred ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCC-----------ccCHHHHHHHHHHcCC-cEEEec
Q psy1416 60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKK-----------VVLTEDAQRFANQMGI-QLFETS 125 (177)
Q Consensus 60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~-----------~v~~~~~~~~a~~~~~-~~~e~S 125 (177)
+.|++++.||.... |+..+.... .+.|+++||||+|+...+ .+..+++..++..++. .|+++|
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 154 (171)
T cd00157 78 CFSVDSPSSFENVKTKWIPEIRHYC---PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECS 154 (171)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEee
Confidence 58999999998874 887664222 379999999999996543 4568889999999987 899999
Q ss_pred CCCCCCHHHHHHHHHH
Q psy1416 126 AKDNINVEEMFMAITN 141 (177)
Q Consensus 126 ak~~~~v~~~f~~~~~ 141 (177)
|++|.|++++|..+++
T Consensus 155 a~~~~gi~~l~~~i~~ 170 (171)
T cd00157 155 ALTQEGVKEVFEEAIR 170 (171)
T ss_pred cCCCCCHHHHHHHHhh
Confidence 9999999999998875
No 105
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.26 E-value=2.3e-11 Score=91.31 Aligned_cols=84 Identities=25% Similarity=0.158 Sum_probs=66.8
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcC-CCccCHHHHHHHHH-HcCCcEEEecCCCCCCHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQ-KKVVLTEDAQRFAN-QMGIQLFETSAKDNINVEEMF 136 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~-~~~v~~~~~~~~a~-~~~~~~~e~Sak~~~~v~~~f 136 (177)
+.|+++..||..+. |+..+.... ...++|++|||||+|+.. .+.+..+++.+.+. .++..|+++||++|.||+++|
T Consensus 77 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 155 (198)
T cd04147 77 VYAVDDPESFEEVERLREEILEVK-EDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVF 155 (198)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHH
Confidence 48999999999997 877663222 224799999999999965 56677666665554 456789999999999999999
Q ss_pred HHHHHHHH
Q psy1416 137 MAITNLVL 144 (177)
Q Consensus 137 ~~~~~~~~ 144 (177)
..+++.+.
T Consensus 156 ~~l~~~~~ 163 (198)
T cd04147 156 KELLRQAN 163 (198)
T ss_pred HHHHHHhh
Confidence 99998765
No 106
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.25 E-value=2e-11 Score=86.48 Aligned_cols=72 Identities=19% Similarity=0.184 Sum_probs=58.5
Q ss_pred ccccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||....|+... ..|+++|+||+||.. +.+..+++.++++..+. +|+++||++|.||+++|..
T Consensus 69 v~d~~~~~s~~~~~~~~~~--------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 139 (142)
T TIGR02528 69 VQSATDPESRFPPGFASIF--------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDY 139 (142)
T ss_pred EecCCCCCcCCChhHHHhc--------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHH
Confidence 5899999999775575432 138999999999965 34567788888888876 7999999999999999988
Q ss_pred HH
Q psy1416 139 IT 140 (177)
Q Consensus 139 ~~ 140 (177)
++
T Consensus 140 l~ 141 (142)
T TIGR02528 140 LN 141 (142)
T ss_pred Hh
Confidence 75
No 107
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.23 E-value=2.3e-11 Score=90.22 Aligned_cols=81 Identities=15% Similarity=0.078 Sum_probs=58.8
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC--------cEEEecCCCCC
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI--------QLFETSAKDNI 130 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~--------~~~e~Sak~~~ 130 (177)
+.|+++++||..+. |+..+.... ..+++|++|||||+|+.+. +..++ +++..++ .++++||++|+
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~-~~~~~piilv~NK~Dl~~~--~~~~~---~~~~l~l~~~~~~~~~~~~~Sa~~g~ 164 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNA--MNAAE---ITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCH-hhCCCCEEEEEECCCCCCC--CCHHH---HHHHhCccccCCCceEEEeccCCCCC
Confidence 47999999999886 776552211 2247899999999999754 33333 3333332 35689999999
Q ss_pred CHHHHHHHHHHHHHHH
Q psy1416 131 NVEEMFMAITNLVLRS 146 (177)
Q Consensus 131 ~v~~~f~~~~~~~~~~ 146 (177)
||+++|..|++.+..+
T Consensus 165 gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 165 GLYEGLDWLSNNIANK 180 (181)
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999999999887653
No 108
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.22 E-value=1.7e-11 Score=89.81 Aligned_cols=79 Identities=14% Similarity=0.026 Sum_probs=59.6
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHH-----HcCCcEEEecCCCCCCHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFAN-----QMGIQLFETSAKDNINVE 133 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~Sak~~~~v~ 133 (177)
++|++++.||..+. |+..+.. .....++|++|||||+|+.... ..++...+.. ..+++|+++||++|.||+
T Consensus 88 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 164 (173)
T cd04154 88 VVDSSDRLRLDDCKRELKELLQ-EERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGLL 164 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHh-ChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence 58999999999886 8766532 1122479999999999997543 4555555543 245689999999999999
Q ss_pred HHHHHHHH
Q psy1416 134 EMFMAITN 141 (177)
Q Consensus 134 ~~f~~~~~ 141 (177)
++|..++.
T Consensus 165 ~l~~~l~~ 172 (173)
T cd04154 165 QGIDWLVD 172 (173)
T ss_pred HHHHHHhc
Confidence 99998864
No 109
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.21 E-value=6.7e-12 Score=93.12 Aligned_cols=85 Identities=14% Similarity=-0.036 Sum_probs=59.3
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHH-----HHcCCcEEEecCCCCCCHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFA-----NQMGIQLFETSAKDNINVE 133 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a-----~~~~~~~~e~Sak~~~~v~ 133 (177)
++|+++++||..+. |+..+.... ...++|++|||||.||... +..++..... +...+.++++||++|.||+
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSED-ELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCH-hhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 48999999999886 665542211 1246899999999999643 2333322211 1112346799999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1416 134 EMFMAITNLVLRSK 147 (177)
Q Consensus 134 ~~f~~~~~~~~~~~ 147 (177)
++|..+++.+.+++
T Consensus 168 e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 168 EGLDWLSANIKKSM 181 (182)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887765
No 110
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.20 E-value=5.8e-12 Score=91.34 Aligned_cols=79 Identities=14% Similarity=-0.008 Sum_probs=55.0
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHH-HHHHHH----HcCCcEEEecCCCCCCHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTED-AQRFAN----QMGIQLFETSAKDNINVE 133 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~-~~~~a~----~~~~~~~e~Sak~~~~v~ 133 (177)
+.|++++.||..+. |+..+.... ....+|++|||||+||.+. +..++ ...++. ..++.++++||++|.||+
T Consensus 74 v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~ 150 (159)
T cd04150 74 VVDSNDRERIGEAREELQRMLNED-ELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLY 150 (159)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhcH-HhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHH
Confidence 48999999999987 766552221 1246899999999999643 23333 222221 123457899999999999
Q ss_pred HHHHHHHH
Q psy1416 134 EMFMAITN 141 (177)
Q Consensus 134 ~~f~~~~~ 141 (177)
++|..|++
T Consensus 151 ~~~~~l~~ 158 (159)
T cd04150 151 EGLDWLSN 158 (159)
T ss_pred HHHHHHhc
Confidence 99998864
No 111
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.20 E-value=5.1e-11 Score=84.84 Aligned_cols=79 Identities=35% Similarity=0.456 Sum_probs=67.6
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|.+++++|..+. |+..+.... ....|+++|+||+|+...+.+..++...++..++.+|+++||+++.+|+++|..
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 156 (159)
T cd00154 79 VYDITNRESFENLDKWLKELKEYA--PENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQS 156 (159)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence 48888999999997 998774222 247899999999999756677889999999999999999999999999999998
Q ss_pred HH
Q psy1416 139 IT 140 (177)
Q Consensus 139 ~~ 140 (177)
++
T Consensus 157 i~ 158 (159)
T cd00154 157 LA 158 (159)
T ss_pred Hh
Confidence 76
No 112
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.20 E-value=9e-12 Score=91.77 Aligned_cols=81 Identities=12% Similarity=-0.054 Sum_probs=56.8
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHH-----HcCCcEEEecCCCCCCHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFAN-----QMGIQLFETSAKDNINVE 133 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~Sak~~~~v~ 133 (177)
+.|+++++||.... |+..+.... ..+++|++|||||+||.+.. ..++...... ...+.|+++||++|.||+
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNED-ELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCH-hhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 47999999999886 776553211 12478999999999997532 3333222211 112347789999999999
Q ss_pred HHHHHHHHHH
Q psy1416 134 EMFMAITNLV 143 (177)
Q Consensus 134 ~~f~~~~~~~ 143 (177)
++|..|++.+
T Consensus 164 e~~~~l~~~~ 173 (175)
T smart00177 164 EGLTWLSNNL 173 (175)
T ss_pred HHHHHHHHHh
Confidence 9999987764
No 113
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.20 E-value=6.7e-11 Score=89.84 Aligned_cols=82 Identities=22% Similarity=0.294 Sum_probs=67.1
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|++++.||..+. |+..+... ..++|+++||||+|+.. +.+..+. ..+++..++.|+++||++|.||+++|..
T Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~---~~~~~i~lv~nK~Dl~~-~~~~~~~-~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 162 (215)
T PTZ00132 88 MFDVTSRITYKNVPNWHRDIVRV---CENIPIVLVGNKVDVKD-RQVKARQ-ITFHRKKNLQYYDISAKSNYNFEKPFLW 162 (215)
T ss_pred EEECcCHHHHHHHHHHHHHHHHh---CCCCCEEEEEECccCcc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 58999999999997 98776422 24789999999999964 3344433 4678888899999999999999999999
Q ss_pred HHHHHHHH
Q psy1416 139 ITNLVLRS 146 (177)
Q Consensus 139 ~~~~~~~~ 146 (177)
+++.+...
T Consensus 163 ia~~l~~~ 170 (215)
T PTZ00132 163 LARRLTND 170 (215)
T ss_pred HHHHHhhc
Confidence 99988764
No 114
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.19 E-value=2.1e-11 Score=94.71 Aligned_cols=76 Identities=18% Similarity=0.187 Sum_probs=61.4
Q ss_pred ccccchhh-hhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416 60 VCTVLNEC-AWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137 (177)
Q Consensus 60 ~~dit~~~-Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~ 137 (177)
++|++++. ||..+. |+..+.. .++|++||+||+||.+.+.+..+.+..++ .+++.+|++||++|.||+++|.
T Consensus 43 V~d~~~p~~s~~~l~r~l~~~~~-----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~v~~~SAktg~gi~eLf~ 116 (245)
T TIGR00157 43 VSSAVLPELSLNQLDRFLVVAEA-----QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQVLMTSSKNQDGLKELIE 116 (245)
T ss_pred EEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCeEEEEecCCchhHHHHHh
Confidence 58999888 899997 9865521 47899999999999766666555555554 4789999999999999999999
Q ss_pred HHHH
Q psy1416 138 AITN 141 (177)
Q Consensus 138 ~~~~ 141 (177)
.+..
T Consensus 117 ~l~~ 120 (245)
T TIGR00157 117 ALQN 120 (245)
T ss_pred hhcC
Confidence 8874
No 115
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.15 E-value=1.1e-10 Score=94.45 Aligned_cols=86 Identities=16% Similarity=-0.030 Sum_probs=67.2
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++.++|+.+. |+.++........+.|++||+||+||.....+..+....++...+.+++++||+++.||+++|..
T Consensus 243 ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~ 322 (335)
T PRK12299 243 LVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRA 322 (335)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 48889888999987 98877432222246899999999999765555445556666667789999999999999999999
Q ss_pred HHHHHHH
Q psy1416 139 ITNLVLR 145 (177)
Q Consensus 139 ~~~~~~~ 145 (177)
+.+.+.+
T Consensus 323 L~~~l~~ 329 (335)
T PRK12299 323 LWELLEE 329 (335)
T ss_pred HHHHHHh
Confidence 9987754
No 116
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.13 E-value=7.9e-11 Score=87.45 Aligned_cols=80 Identities=16% Similarity=0.089 Sum_probs=61.0
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHH----------------cCCcEE
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ----------------MGIQLF 122 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~----------------~~~~~~ 122 (177)
+.|+++..+|.... |+..+... ....+.|++|||||+|+.. .+..++...+... ..+.++
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~-~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSD-EELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcC-ccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 58999999998776 77665321 1224689999999999963 5677777776643 224689
Q ss_pred EecCCCCCCHHHHHHHHHHH
Q psy1416 123 ETSAKDNINVEEMFMAITNL 142 (177)
Q Consensus 123 e~Sak~~~~v~~~f~~~~~~ 142 (177)
+|||++|.||+++|..++..
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EeEecCCCChHHHHHHHHhh
Confidence 99999999999999999864
No 117
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.10 E-value=1.3e-10 Score=84.43 Aligned_cols=82 Identities=16% Similarity=0.080 Sum_probs=61.2
Q ss_pred ccccchh-hhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHH-cCCcEEEecCCCCCCHHHHH
Q psy1416 60 VCTVLNE-CAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ-MGIQLFETSAKDNINVEEMF 136 (177)
Q Consensus 60 ~~dit~~-~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~-~~~~~~e~Sak~~~~v~~~f 136 (177)
+.|.++. ++|.++. |++.+..........|+++|+||+|+.....+ .+....+... .+.+++++||+++.||+++|
T Consensus 85 v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 163 (170)
T cd01898 85 VIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGLDELL 163 (170)
T ss_pred EEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCHHHHH
Confidence 3888998 7999887 98776432211236899999999999765443 3344445555 37789999999999999999
Q ss_pred HHHHHH
Q psy1416 137 MAITNL 142 (177)
Q Consensus 137 ~~~~~~ 142 (177)
..+++.
T Consensus 164 ~~i~~~ 169 (170)
T cd01898 164 RKLAEL 169 (170)
T ss_pred HHHHhh
Confidence 998864
No 118
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.10 E-value=1.4e-10 Score=84.17 Aligned_cols=78 Identities=13% Similarity=0.032 Sum_probs=57.4
Q ss_pred cccchhhhh--cccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416 61 CTVLNECAW--LGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137 (177)
Q Consensus 61 ~dit~~~Sf--~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~ 137 (177)
.|.++..+| .... |+..+... ..+.|++||+||+|+...+.+.. ...++...+.+++++||++|.||+++|.
T Consensus 87 ~d~~~~~~~~~~~~~~~~~~l~~~---~~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (168)
T cd01897 87 FDPSETCGYSLEEQLSLFEEIKPL---FKNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEGVDEVKN 161 (168)
T ss_pred EeCCcccccchHHHHHHHHHHHhh---cCcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCCHHHHHH
Confidence 566777665 3433 76655321 13789999999999976554332 4556666678899999999999999999
Q ss_pred HHHHHH
Q psy1416 138 AITNLV 143 (177)
Q Consensus 138 ~~~~~~ 143 (177)
.+++.+
T Consensus 162 ~l~~~~ 167 (168)
T cd01897 162 KACELL 167 (168)
T ss_pred HHHHHh
Confidence 998876
No 119
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.10 E-value=3.5e-10 Score=83.81 Aligned_cols=87 Identities=10% Similarity=0.069 Sum_probs=63.8
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHH--c----CCcEEEecCCCCCCH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ--M----GIQLFETSAKDNINV 132 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~--~----~~~~~e~Sak~~~~v 132 (177)
+.|.++..+|..+. |+..+... ....+.|++||+||+|+... +..++...+... . +.+++++||++|.||
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~-~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRF-SENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhh-hhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence 47889999998887 88766322 12246899999999999643 444555544431 1 245889999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1416 133 EEMFMAITNLVLRSKKE 149 (177)
Q Consensus 133 ~~~f~~~~~~~~~~~~~ 149 (177)
+++|..+++.+.+....
T Consensus 159 ~~l~~~l~~~l~~~~~~ 175 (183)
T cd04152 159 QEGLEKLYEMILKRRKM 175 (183)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999766543
No 120
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.08 E-value=6.7e-11 Score=85.22 Aligned_cols=80 Identities=11% Similarity=0.010 Sum_probs=55.6
Q ss_pred ccccchhhhhcccc-hhhhhhhhhcc-CCCCcEEEEeeCCCCcCCCccCHHHHHHH---HH--HcCCcEEEecCCCCCCH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCW-LFPSGLRLVGNKNDDPQKKVVLTEDAQRF---AN--QMGIQLFETSAKDNINV 132 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~---a~--~~~~~~~e~Sak~~~~v 132 (177)
+.|+++..||..+. |+..+...... ..++|++|||||+|+.... ..++.... +. .....++++||++|.||
T Consensus 75 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv 152 (162)
T cd04157 75 VIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGL 152 (162)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCch
Confidence 47899999998886 87765322221 2479999999999997532 22222221 11 12345899999999999
Q ss_pred HHHHHHHHH
Q psy1416 133 EEMFMAITN 141 (177)
Q Consensus 133 ~~~f~~~~~ 141 (177)
+++|..|++
T Consensus 153 ~~~~~~l~~ 161 (162)
T cd04157 153 DEGVQWLQA 161 (162)
T ss_pred HHHHHHHhc
Confidence 999998864
No 121
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.05 E-value=1.3e-10 Score=83.76 Aligned_cols=79 Identities=16% Similarity=0.116 Sum_probs=55.9
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHH------HHHHcCCcEEEecCCCCCCH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQR------FANQMGIQLFETSAKDNINV 132 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~------~a~~~~~~~~e~Sak~~~~v 132 (177)
++|.++..+|..+. |+..+.... ...++|++||+||+|+... +..++... ++...+.+++++||++|.||
T Consensus 74 v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 150 (160)
T cd04156 74 VVDSSDEARLDESQKELKHILKNE-HIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGL 150 (160)
T ss_pred EEECCcHHHHHHHHHHHHHHHhch-hhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCCh
Confidence 48889999999887 776653221 2247899999999999642 22333222 22223457999999999999
Q ss_pred HHHHHHHHH
Q psy1416 133 EEMFMAITN 141 (177)
Q Consensus 133 ~~~f~~~~~ 141 (177)
+++|..+++
T Consensus 151 ~~~~~~i~~ 159 (160)
T cd04156 151 AEAFRKLAS 159 (160)
T ss_pred HHHHHHHhc
Confidence 999998864
No 122
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.01 E-value=5.1e-10 Score=82.23 Aligned_cols=79 Identities=11% Similarity=-0.061 Sum_probs=56.3
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHH-HHHH----HHcCCcEEEecCCCCCCHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDA-QRFA----NQMGIQLFETSAKDNINVE 133 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~-~~~a----~~~~~~~~e~Sak~~~~v~ 133 (177)
+.|++++++|..+. |+..+.... ...++|++||+||+|+... +..++. ..+. +..+++++++||++|.||+
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~-~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~ 165 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHE-DLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLP 165 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhch-hhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHH
Confidence 48889999998886 665553222 2246899999999999652 233332 2222 2344579999999999999
Q ss_pred HHHHHHHH
Q psy1416 134 EMFMAITN 141 (177)
Q Consensus 134 ~~f~~~~~ 141 (177)
++|..|++
T Consensus 166 e~~~~l~~ 173 (174)
T cd04153 166 EGLDWIAS 173 (174)
T ss_pred HHHHHHhc
Confidence 99999875
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.01 E-value=3e-10 Score=81.72 Aligned_cols=79 Identities=13% Similarity=-0.089 Sum_probs=57.9
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHH-----HcCCcEEEecCCCCCCHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFAN-----QMGIQLFETSAKDNINVE 133 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~Sak~~~~v~ 133 (177)
+.|+++.++|..+. |+..+.... ...+.|+++|+||+|+...+ +.++..+... ....+++++||++|.||+
T Consensus 73 v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 149 (158)
T cd00878 73 VVDSSDRERIEEAKEELHKLLNEE-ELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLD 149 (158)
T ss_pred EEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHH
Confidence 58999999999886 776653222 23578999999999997543 3333333322 234679999999999999
Q ss_pred HHHHHHHH
Q psy1416 134 EMFMAITN 141 (177)
Q Consensus 134 ~~f~~~~~ 141 (177)
++|..|+.
T Consensus 150 ~~~~~l~~ 157 (158)
T cd00878 150 EGLDWLLQ 157 (158)
T ss_pred HHHHHHhh
Confidence 99998874
No 124
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.00 E-value=5.2e-10 Score=84.49 Aligned_cols=72 Identities=14% Similarity=-0.031 Sum_probs=56.4
Q ss_pred ccccchhhhhcccc-hhhhhhhhh-----------------ccCCCCcEEEEeeCCCCcCCCccCHH----HHHHHHHHc
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIY-----------------CWLFPSGLRLVGNKNDDPQKKVVLTE----DAQRFANQM 117 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~-----------------~~~~~~~~ilvgnK~Dl~~~~~v~~~----~~~~~a~~~ 117 (177)
++|+|+++||+++. |+.++.... ....++|++|||||+||.++|.++.+ ....+|++.
T Consensus 84 VyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~ 163 (202)
T cd04102 84 VHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQG 163 (202)
T ss_pred EEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhc
Confidence 59999999999998 998874321 11247999999999999887777665 345678899
Q ss_pred CCcEEEecCCCCCC
Q psy1416 118 GIQLFETSAKDNIN 131 (177)
Q Consensus 118 ~~~~~e~Sak~~~~ 131 (177)
+++.++.+++++..
T Consensus 164 ~~~~i~~~c~~~~~ 177 (202)
T cd04102 164 NAEEINLNCTNGRL 177 (202)
T ss_pred CCceEEEecCCccc
Confidence 99999999886543
No 125
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.99 E-value=2.2e-10 Score=82.56 Aligned_cols=79 Identities=16% Similarity=0.046 Sum_probs=53.0
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHH-HH----HHcCCcEEEecCCCCCCHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQR-FA----NQMGIQLFETSAKDNINVE 133 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~-~a----~~~~~~~~e~Sak~~~~v~ 133 (177)
+.|++++.+|.... |+..+.... ...+.|++||+||+|+.+.. ...+... +. ...+.+++++||++|.||+
T Consensus 73 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 149 (158)
T cd04151 73 VVDSTDRDRLGTAKEELHAMLEEE-ELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLD 149 (158)
T ss_pred EEECCCHHHHHHHHHHHHHHHhch-hhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHH
Confidence 48888988887764 554332111 12468999999999997432 2222221 11 1123469999999999999
Q ss_pred HHHHHHHH
Q psy1416 134 EMFMAITN 141 (177)
Q Consensus 134 ~~f~~~~~ 141 (177)
++|..+++
T Consensus 150 ~l~~~l~~ 157 (158)
T cd04151 150 EGMDWLVN 157 (158)
T ss_pred HHHHHHhc
Confidence 99999875
No 126
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.97 E-value=9.3e-10 Score=79.75 Aligned_cols=79 Identities=15% Similarity=0.062 Sum_probs=58.2
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHH-------cCCcEEEecCCCCCC
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ-------MGIQLFETSAKDNIN 131 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~-------~~~~~~e~Sak~~~~ 131 (177)
+.|.++.++|..+. |+..+... ....++|++||+||+|+... +..++...+... .+.+++++||++|.|
T Consensus 80 vvd~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 156 (167)
T cd04160 80 VIDSTDRERFEESKSALEKVLRN-EALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTG 156 (167)
T ss_pred EEECchHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCCcC
Confidence 47888888888886 77665322 12247899999999998653 445555555433 235799999999999
Q ss_pred HHHHHHHHHH
Q psy1416 132 VEEMFMAITN 141 (177)
Q Consensus 132 v~~~f~~~~~ 141 (177)
|+++|..|++
T Consensus 157 v~e~~~~l~~ 166 (167)
T cd04160 157 VREGIEWLVE 166 (167)
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 127
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.95 E-value=3.3e-10 Score=82.74 Aligned_cols=81 Identities=10% Similarity=-0.030 Sum_probs=57.5
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCcc----CHHHHHHHHHHcC--CcEEEecCCCC---
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVV----LTEDAQRFANQMG--IQLFETSAKDN--- 129 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v----~~~~~~~~a~~~~--~~~~e~Sak~~--- 129 (177)
+.|++++.+|..+. |+..+... ....++|++|||||+|+...+.. .......++++.+ ..++++||++|
T Consensus 73 V~D~s~~~s~~~~~~~l~~l~~~-~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~ 151 (167)
T cd04161 73 VVDSSDDDRVQEVKEILRELLQH-PRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGK 151 (167)
T ss_pred EEECCchhHHHHHHHHHHHHHcC-ccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCC
Confidence 47999999999987 88776322 22247899999999999865521 1112233443333 45778999998
Q ss_pred ---CCHHHHHHHHHH
Q psy1416 130 ---INVEEMFMAITN 141 (177)
Q Consensus 130 ---~~v~~~f~~~~~ 141 (177)
.||++.|..|+.
T Consensus 152 ~~~~g~~~~~~wl~~ 166 (167)
T cd04161 152 KIDPSIVEGLRWLLA 166 (167)
T ss_pred ccccCHHHHHHHHhc
Confidence 899999999864
No 128
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.94 E-value=3.6e-09 Score=76.81 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=59.2
Q ss_pred ccccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC--cEEEecCCCCCCHHHHHH
Q psy1416 60 VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI--QLFETSAKDNINVEEMFM 137 (177)
Q Consensus 60 ~~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~--~~~e~Sak~~~~v~~~f~ 137 (177)
++|.++..|+.. .|+..+. ...|+++|+||+|+.. ...+...+++.+.+. ++|++||++|.||+++|.
T Consensus 71 v~d~~~~~s~~~-~~~~~~~------~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 71 VHGANDPESRLP-AGLLDIG------VSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEeCCCcccccC-HHHHhcc------CCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 478888887732 2764431 2568999999999964 345677788888875 899999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 138 AITNLVLRS 146 (177)
Q Consensus 138 ~~~~~~~~~ 146 (177)
.+++.+.+.
T Consensus 141 ~l~~~~~~~ 149 (158)
T PRK15467 141 YLASLTKQE 149 (158)
T ss_pred HHHHhchhh
Confidence 998777543
No 129
>KOG3883|consensus
Probab=98.92 E-value=2.6e-09 Score=75.91 Aligned_cols=81 Identities=16% Similarity=0.143 Sum_probs=71.5
Q ss_pred cccchhhhhcccc----hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q psy1416 61 CTVLNECAWLGCG----WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136 (177)
Q Consensus 61 ~dit~~~Sf~~~~----w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f 136 (177)
+|..|++||+.+. |++. ......+||++.|||+|+.+.+.|..+-+..||++..+..+|++|++...+-+.|
T Consensus 92 Ys~~d~eSf~rv~llKk~Idk----~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf 167 (198)
T KOG3883|consen 92 YSPMDPESFQRVELLKKEIDK----HKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF 167 (198)
T ss_pred ecCCCHHHHHHHHHHHHHHhh----ccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence 7888999999985 5432 3334579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 137 MAITNLVLR 145 (177)
Q Consensus 137 ~~~~~~~~~ 145 (177)
..++..+..
T Consensus 168 ~~l~~rl~~ 176 (198)
T KOG3883|consen 168 TYLASRLHQ 176 (198)
T ss_pred HHHHHhccC
Confidence 999988764
No 130
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.89 E-value=3.4e-09 Score=85.65 Aligned_cols=82 Identities=17% Similarity=0.064 Sum_probs=61.0
Q ss_pred cccchh---hhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q psy1416 61 CTVLNE---CAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136 (177)
Q Consensus 61 ~dit~~---~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f 136 (177)
.|+++. ++++.+. |.+++........+.|++||+||+||..... ..+....+++..+.+++++||+++.||+++|
T Consensus 243 vD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~ 321 (329)
T TIGR02729 243 IDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGEGLDELL 321 (329)
T ss_pred EcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCcCHHHHH
Confidence 677776 6777776 8776642222224689999999999975432 2345556677778899999999999999999
Q ss_pred HHHHHHH
Q psy1416 137 MAITNLV 143 (177)
Q Consensus 137 ~~~~~~~ 143 (177)
..+++.+
T Consensus 322 ~~I~~~l 328 (329)
T TIGR02729 322 YALAELL 328 (329)
T ss_pred HHHHHHh
Confidence 9998754
No 131
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.88 E-value=4.9e-09 Score=76.85 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=54.8
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCc---EEEecCCCCCCHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ---LFETSAKDNINVEEM 135 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~---~~e~Sak~~~~v~~~ 135 (177)
+.|+++..++.... |.... ..++|+++|+||+|+.+.+ ..+...++++.+++. ++++||++|.||+++
T Consensus 97 v~D~~~~~~~~~~~~~~~~~------~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 168 (179)
T cd01890 97 LVDATQGVEAQTLANFYLAL------ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAILVSAKTGLGVEDL 168 (179)
T ss_pred EEECCCCccHhhHHHHHHHH------HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEEEeeccCCCCHHHH
Confidence 37777776766665 53222 1367899999999996533 223345667777763 899999999999999
Q ss_pred HHHHHHHH
Q psy1416 136 FMAITNLV 143 (177)
Q Consensus 136 f~~~~~~~ 143 (177)
|..+++.+
T Consensus 169 ~~~l~~~~ 176 (179)
T cd01890 169 LEAIVERI 176 (179)
T ss_pred HHHHHhhC
Confidence 99998764
No 132
>KOG4423|consensus
Probab=98.86 E-value=4.3e-09 Score=77.11 Aligned_cols=87 Identities=23% Similarity=0.216 Sum_probs=68.8
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccC--CCCcEEEEeeCCCCcCCCccC-HHHHHHHHHHcCC-cEEEecCCCCCCHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWL--FPSGLRLVGNKNDDPQKKVVL-TEDAQRFANQMGI-QLFETSAKDNINVEE 134 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~--~~~~~ilvgnK~Dl~~~~~v~-~~~~~~~a~~~~~-~~~e~Sak~~~~v~~ 134 (177)
..|+|+.-+|+.+. |..++...-..+ .++|+||.+||||.+..-... ......|.+++|. .++|||||.+.||+|
T Consensus 105 Vfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~E 184 (229)
T KOG4423|consen 105 VFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPE 184 (229)
T ss_pred EEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhH
Confidence 48999999999998 998874322222 467899999999997543222 4566778888886 599999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1416 135 MFMAITNLVLRS 146 (177)
Q Consensus 135 ~f~~~~~~~~~~ 146 (177)
+-..+++.++..
T Consensus 185 a~r~lVe~~lvn 196 (229)
T KOG4423|consen 185 AQRELVEKILVN 196 (229)
T ss_pred HHHHHHHHHHhh
Confidence 999999888755
No 133
>PRK04213 GTP-binding protein; Provisional
Probab=98.82 E-value=1.1e-08 Score=76.73 Aligned_cols=80 Identities=19% Similarity=0.190 Sum_probs=55.3
Q ss_pred cccchhhhhccc-c-hhhh--------hhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC---------cE
Q psy1416 61 CTVLNECAWLGC-G-WMTI--------CPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI---------QL 121 (177)
Q Consensus 61 ~dit~~~Sf~~~-~-w~~~--------~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~---------~~ 121 (177)
.++.|..+|.++ . |... +..... ..++|++||+||+||...+ .+...++++.+++ ++
T Consensus 95 i~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 170 (201)
T PRK04213 95 VLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR-ELGIPPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDII 170 (201)
T ss_pred EEEEeCccccccccccccCCCcHHHHHHHHHHH-HcCCCeEEEEECccccCcH---HHHHHHHHHHhcCCccccccCCcE
Confidence 456677777665 3 6432 111111 1378999999999996543 3455667777665 47
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHH
Q psy1416 122 FETSAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 122 ~e~Sak~~~~v~~~f~~~~~~~~~ 145 (177)
+++||++| ||+++|..|++.+.+
T Consensus 171 ~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 171 APISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred EEEecccC-CHHHHHHHHHHhhcC
Confidence 99999999 999999999987644
No 134
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.80 E-value=6.4e-09 Score=78.17 Aligned_cols=76 Identities=17% Similarity=-0.042 Sum_probs=55.0
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|.++..++..+. |...+... ...+.|+++|+||+|+.....+. .++...+.+++++||++|.||+++|..
T Consensus 127 v~D~~~~~~~~~~~~~~~~l~~~--~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 199 (204)
T cd01878 127 VVDASDPDYEEQIETVEKVLKEL--GAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGEGLDELLEA 199 (204)
T ss_pred EEECCCCChhhHHHHHHHHHHHc--CcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCCCHHHHHHH
Confidence 46777777877765 66544221 12368999999999996543221 344556678999999999999999999
Q ss_pred HHHH
Q psy1416 139 ITNL 142 (177)
Q Consensus 139 ~~~~ 142 (177)
+...
T Consensus 200 L~~~ 203 (204)
T cd01878 200 IEEL 203 (204)
T ss_pred HHhh
Confidence 8765
No 135
>KOG0078|consensus
Probab=98.79 E-value=9.4e-09 Score=76.66 Aligned_cols=33 Identities=42% Similarity=0.748 Sum_probs=29.9
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 33 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~~ 33 (177)
+|+.|+|||||+|.||+++|..||+.|+.+...
T Consensus 147 ~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 147 YGIKFFETSAKTNFNIEEAFLSLARDILQKLED 179 (207)
T ss_pred hCCeEEEccccCCCCHHHHHHHHHHHHHhhcch
Confidence 589999999999999999999999999976543
No 136
>KOG0096|consensus
Probab=98.79 E-value=1.8e-09 Score=79.25 Aligned_cols=80 Identities=24% Similarity=0.288 Sum_probs=64.8
Q ss_pred cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q psy1416 61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139 (177)
Q Consensus 61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~ 139 (177)
.|||.+-++.++. |.+++... +.++|||++|||.|..... + ......+-+..++.||+.||+++.|.+..|..+
T Consensus 90 FdVtsr~t~~n~~rwhrd~~rv---~~NiPiv~cGNKvDi~~r~-~-k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L 164 (216)
T KOG0096|consen 90 FDVTSRFTYKNVPRWHRDLVRV---RENIPIVLCGNKVDIKARK-V-KAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL 164 (216)
T ss_pred eeeeehhhhhcchHHHHHHHHH---hcCCCeeeeccceeccccc-c-ccccceeeecccceeEEeecccccccccchHHH
Confidence 8999999999997 98877432 3479999999999987543 2 223344556678899999999999999999999
Q ss_pred HHHHHH
Q psy1416 140 TNLVLR 145 (177)
Q Consensus 140 ~~~~~~ 145 (177)
++.+..
T Consensus 165 arKl~G 170 (216)
T KOG0096|consen 165 ARKLTG 170 (216)
T ss_pred hhhhcC
Confidence 998864
No 137
>KOG0091|consensus
Probab=98.78 E-value=1.3e-08 Score=73.14 Aligned_cols=33 Identities=33% Similarity=0.528 Sum_probs=30.5
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 33 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~~ 33 (177)
+||.|+|||||+|.||++||..|+++|+..+..
T Consensus 146 hgM~FVETSak~g~NVeEAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 146 HGMAFVETSAKNGCNVEEAFDMLAQEIFQAIQQ 178 (213)
T ss_pred cCceEEEecccCCCcHHHHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999987654
No 138
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.75 E-value=2.1e-08 Score=73.09 Aligned_cols=76 Identities=14% Similarity=0.049 Sum_probs=53.6
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC--------cEEEecCCCCC
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI--------QLFETSAKDNI 130 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~--------~~~e~Sak~~~ 130 (177)
+.|+++..+|.... |+..+... ....++|+++|+||+|+.... .. ..+.+..++ .++++||++|.
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~--~~---~~i~~~l~~~~~~~~~~~~~~~Sa~~~~ 161 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEE-EKLAGVPVLVFANKQDLATAA--PA---EEIAEALNLHDLRDRTWHIQACSAKTGE 161 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECCCCccCC--CH---HHHHHHcCCcccCCCeEEEEEeECCCCC
Confidence 47888988998876 66544221 122468999999999986432 22 233344332 37899999999
Q ss_pred CHHHHHHHHHH
Q psy1416 131 NVEEMFMAITN 141 (177)
Q Consensus 131 ~v~~~f~~~~~ 141 (177)
||+++|..+++
T Consensus 162 gi~~~~~~l~~ 172 (173)
T cd04155 162 GLQEGMNWVCK 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999875
No 139
>PLN00023 GTP-binding protein; Provisional
Probab=98.74 E-value=1.9e-08 Score=80.64 Aligned_cols=88 Identities=17% Similarity=0.257 Sum_probs=60.1
Q ss_pred ccccchhhhhcccc-hhhhhhhhhcc----------CCCCcEEEEeeCCCCcCCC---c---cCHHHHHHHHHHcCCc--
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCW----------LFPSGLRLVGNKNDDPQKK---V---VLTEDAQRFANQMGIQ-- 120 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~----------~~~~~~ilvgnK~Dl~~~~---~---v~~~~~~~~a~~~~~~-- 120 (177)
+.|+|++.||+++. |++++...... ..++|++|||||+||..++ . +..+++++||+++++.
T Consensus 113 VyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~l~~ 192 (334)
T PLN00023 113 VHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGLLPS 192 (334)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHHHHHHHHHcCCCcc
Confidence 58999999999998 99888533210 1358999999999997642 3 3689999999998841
Q ss_pred --------------EEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy1416 121 --------------LFETSAKDNINVEEMFMAITNLVLRSK 147 (177)
Q Consensus 121 --------------~~e~Sak~~~~v~~~f~~~~~~~~~~~ 147 (177)
-+.++||.+.==.|+.....+.+++++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (334)
T PLN00023 193 SEELPLTESFPGNGGLIAAAKEARYDKEALIKFFRMLIRRR 233 (334)
T ss_pred ccccccccccCCCccHhhhhhhhcccHHHHHHHHHHHHHHH
Confidence 123456655433445455555555443
No 140
>KOG0084|consensus
Probab=98.71 E-value=1.7e-08 Score=74.57 Aligned_cols=34 Identities=38% Similarity=0.610 Sum_probs=30.1
Q ss_pred CCCc-EEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy1416 1 MGIQ-LFETSAKDNINVEEMFMAITNLVLRSKKEQ 34 (177)
Q Consensus 1 ~~~~-f~EtSAk~~~nV~~~F~~l~~~i~~~~~~~ 34 (177)
++++ |+|||||++.||+++|+.|+..|++++...
T Consensus 144 ~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~~ 178 (205)
T KOG0084|consen 144 LGIPIFLETSAKDSTNVEDAFLTLAKELKQRKGLH 178 (205)
T ss_pred cCCcceeecccCCccCHHHHHHHHHHHHHHhcccC
Confidence 4688 999999999999999999999998876543
No 141
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.71 E-value=1.2e-08 Score=74.30 Aligned_cols=83 Identities=19% Similarity=0.093 Sum_probs=57.7
Q ss_pred ccccchh------hhhcccc-hhhhhhhhhcc-----CCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCC
Q psy1416 60 VCTVLNE------CAWLGCG-WMTICPIIYCW-----LFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAK 127 (177)
Q Consensus 60 ~~dit~~------~Sf~~~~-w~~~~~~~~~~-----~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak 127 (177)
.+|.++. .++.... |...+...... ....|+++|+||+|+...+.+............+..++++||+
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAK 160 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehh
Confidence 3677777 5777776 66555322111 1368999999999997655443333334445566789999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy1416 128 DNINVEEMFMAITNL 142 (177)
Q Consensus 128 ~~~~v~~~f~~~~~~ 142 (177)
++.|++++|..+++.
T Consensus 161 ~~~gl~~l~~~l~~~ 175 (176)
T cd01881 161 TEEGLDELIRAIYEL 175 (176)
T ss_pred hhcCHHHHHHHHHhh
Confidence 999999999988754
No 142
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.70 E-value=4.4e-08 Score=70.06 Aligned_cols=55 Identities=20% Similarity=0.313 Sum_probs=46.2
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNL 142 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~ 142 (177)
+.|+++|+||+|+.+.+.+..+ ...++..++.+++++||++|.|++++|..+.+.
T Consensus 101 ~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 101 GLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred CCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHH
Confidence 6899999999999765555443 457788889999999999999999999988765
No 143
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.69 E-value=1.3e-08 Score=72.45 Aligned_cols=79 Identities=18% Similarity=0.121 Sum_probs=54.7
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHH-----HHcCCcEEEecCCCCCCHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFA-----NQMGIQLFETSAKDNINVE 133 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a-----~~~~~~~~e~Sak~~~~v~ 133 (177)
+.|+++..+|.... |+..+... ....+.|+++|+||+|+.+...+ .+..... .....+++++||++|.||+
T Consensus 74 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 150 (159)
T cd04159 74 VVDAADRTALEAAKNELHDLLEK-PSLEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNID 150 (159)
T ss_pred EEECCCHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChH
Confidence 57888888998776 76655322 12247899999999999764322 2221111 1223578999999999999
Q ss_pred HHHHHHHH
Q psy1416 134 EMFMAITN 141 (177)
Q Consensus 134 ~~f~~~~~ 141 (177)
++|..+++
T Consensus 151 ~l~~~l~~ 158 (159)
T cd04159 151 IVLDWLIK 158 (159)
T ss_pred HHHHHHhh
Confidence 99998865
No 144
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.69 E-value=3e-08 Score=73.56 Aligned_cols=80 Identities=13% Similarity=0.093 Sum_probs=57.8
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHH------------cCCcEEEecC
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ------------MGIQLFETSA 126 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~------------~~~~~~e~Sa 126 (177)
+.|++++.+|.... |+..+.... ...+.|++||+||+|+.. .++.++......- ....++++||
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSDE-ELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCh-hhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 47889999998886 776653211 124689999999999963 4566655543311 1235899999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy1416 127 KDNINVEEMFMAITNL 142 (177)
Q Consensus 127 k~~~~v~~~f~~~~~~ 142 (177)
++|.|++++|..|...
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999754
No 145
>KOG0092|consensus
Probab=98.68 E-value=1.4e-08 Score=74.68 Aligned_cols=30 Identities=47% Similarity=0.605 Sum_probs=27.7
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVLRSK 31 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~ 31 (177)
|++|||||||||.||+++|..|++.|....
T Consensus 141 gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 141 GLLFFETSAKTGENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred CCEEEEEecccccCHHHHHHHHHHhccCcc
Confidence 789999999999999999999999997654
No 146
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.65 E-value=1e-07 Score=79.31 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=60.2
Q ss_pred cccchh---hhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q psy1416 61 CTVLNE---CAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136 (177)
Q Consensus 61 ~dit~~---~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f 136 (177)
.|+++. +++.+.. |.+++..........|++||+||+||... .+....+++.++.+++++||+++.||+++|
T Consensus 244 ID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~ 319 (424)
T PRK12297 244 IDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQGLDELL 319 (424)
T ss_pred EeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCCCHHHHH
Confidence 577654 6677765 77666422221236899999999998532 345566777777889999999999999999
Q ss_pred HHHHHHHHHH
Q psy1416 137 MAITNLVLRS 146 (177)
Q Consensus 137 ~~~~~~~~~~ 146 (177)
..+++.+.+.
T Consensus 320 ~~L~~~l~~~ 329 (424)
T PRK12297 320 YAVAELLEET 329 (424)
T ss_pred HHHHHHHHhC
Confidence 9999877654
No 147
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.65 E-value=4.9e-08 Score=70.12 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=39.6
Q ss_pred CcEEEEeeCCCCcCCC--ccCHHHHHHHHHH---cCCcEEEecCCCCCCHHHHHHHHHH
Q psy1416 88 SGLRLVGNKNDDPQKK--VVLTEDAQRFANQ---MGIQLFETSAKDNINVEEMFMAITN 141 (177)
Q Consensus 88 ~~~ilvgnK~Dl~~~~--~v~~~~~~~~a~~---~~~~~~e~Sak~~~~v~~~f~~~~~ 141 (177)
.|++||+||+|+.... ....++..++... .+.+++++||++|.||+++|..+.+
T Consensus 105 ~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 105 KRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred CcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 3899999999997532 1122344444444 4678999999999999999988764
No 148
>KOG0394|consensus
Probab=98.62 E-value=7.4e-08 Score=70.55 Aligned_cols=32 Identities=41% Similarity=0.562 Sum_probs=29.1
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVLRSKKE 33 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~~ 33 (177)
++||||||||++.||++||+.+++..+..+..
T Consensus 152 nipyfEtSAK~~~NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 152 NIPYFETSAKEATNVDEAFEEIARRALANEDR 183 (210)
T ss_pred CceeEEecccccccHHHHHHHHHHHHHhccch
Confidence 58999999999999999999999999987643
No 149
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.61 E-value=4.9e-08 Score=82.58 Aligned_cols=81 Identities=15% Similarity=0.010 Sum_probs=53.5
Q ss_pred cccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCc--cCHHHH-HHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416 61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKV--VLTEDA-QRFANQMGIQLFETSAKDNINVEEMFM 137 (177)
Q Consensus 61 ~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~--v~~~~~-~~~a~~~~~~~~e~Sak~~~~v~~~f~ 137 (177)
.|.++..|+..+.|+..+. ..+.|+|||+||+||..... ....+. ..++....++++++||++|.||+++|.
T Consensus 301 ~Da~~~~s~~~~~~~~~~~-----~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~ 375 (472)
T PRK03003 301 IDASEPISEQDQRVLSMVI-----EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVP 375 (472)
T ss_pred EeCCCCCCHHHHHHHHHHH-----HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHH
Confidence 6666666666665544332 13689999999999964211 111111 122222347899999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 138 AITNLVLRS 146 (177)
Q Consensus 138 ~~~~~~~~~ 146 (177)
.+++.+...
T Consensus 376 ~i~~~~~~~ 384 (472)
T PRK03003 376 ALETALESW 384 (472)
T ss_pred HHHHHHHHh
Confidence 999876543
No 150
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.56 E-value=2.9e-07 Score=69.65 Aligned_cols=87 Identities=24% Similarity=0.122 Sum_probs=62.2
Q ss_pred ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcCCC------------ccCHHHHHHHHHHc---CCcEE
Q psy1416 60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQKK------------VVLTEDAQRFANQM---GIQLF 122 (177)
Q Consensus 60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~------------~v~~~~~~~~a~~~---~~~~~ 122 (177)
++|+++..++..+ . |+..+..... ...|++|||||+||...+ .+........+... ...++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALL 161 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCC--CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhccccee
Confidence 5888885555555 4 9877632221 469999999999998763 33444434333333 34499
Q ss_pred EecCC--CCCCHHHHHHHHHHHHHHHHH
Q psy1416 123 ETSAK--DNINVEEMFMAITNLVLRSKK 148 (177)
Q Consensus 123 e~Sak--~~~~v~~~f~~~~~~~~~~~~ 148 (177)
++||+ ++.+|.++|..+++.+.+...
T Consensus 162 ~~s~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (219)
T COG1100 162 ETSAKSLTGPNVNELFKELLRKLLEEIE 189 (219)
T ss_pred EeecccCCCcCHHHHHHHHHHHHHHhhh
Confidence 99999 999999999999999976543
No 151
>KOG0083|consensus
Probab=98.56 E-value=5.4e-08 Score=67.81 Aligned_cols=31 Identities=42% Similarity=0.580 Sum_probs=28.5
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSK 31 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~ 31 (177)
||+||+|||||+|.||+-+|..||+++.+..
T Consensus 133 y~ipfmetsaktg~nvd~af~~ia~~l~k~~ 163 (192)
T KOG0083|consen 133 YGIPFMETSAKTGFNVDLAFLAIAEELKKLK 163 (192)
T ss_pred HCCCceeccccccccHhHHHHHHHHHHHHhc
Confidence 5899999999999999999999999987753
No 152
>KOG1707|consensus
Probab=98.49 E-value=5.9e-08 Score=81.88 Aligned_cols=86 Identities=23% Similarity=0.264 Sum_probs=62.6
Q ss_pred ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHH-HHHHHHHcC-C-cEEEecCCCCCCHHH
Q psy1416 60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTED-AQRFANQMG-I-QLFETSAKDNINVEE 134 (177)
Q Consensus 60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~-~~~~a~~~~-~-~~~e~Sak~~~~v~~ 134 (177)
.+++++++|.+.+. |+..+....+...++||||||||+|+.....-+.+. ...+..++. + .-+||||++..++.+
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e 165 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSE 165 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHh
Confidence 37789999999996 998774333334689999999999997544333332 222333332 2 478999999999999
Q ss_pred HHHHHHHHHHH
Q psy1416 135 MFMAITNLVLR 145 (177)
Q Consensus 135 ~f~~~~~~~~~ 145 (177)
+|+...+.++.
T Consensus 166 ~fYyaqKaVih 176 (625)
T KOG1707|consen 166 LFYYAQKAVIH 176 (625)
T ss_pred hhhhhhheeec
Confidence 99999888764
No 153
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.48 E-value=4.4e-07 Score=63.14 Aligned_cols=80 Identities=35% Similarity=0.485 Sum_probs=56.8
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHH-HHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTED-AQRFANQMGIQLFETSAKDNINVEEMFM 137 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~-~~~~a~~~~~~~~e~Sak~~~~v~~~f~ 137 (177)
+.|.++..++.... |+.... ........|+++|+||+|+.......... ...+....+.+++++||+.+.+++++|.
T Consensus 75 v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 153 (157)
T cd00882 75 VYDVTDRESFENVKEWLLLIL-INKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFE 153 (157)
T ss_pred EEECcCHHHHHHHHHHHHHHH-HhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHH
Confidence 47788888888776 632211 22223578999999999997544332222 4455566678999999999999999999
Q ss_pred HHH
Q psy1416 138 AIT 140 (177)
Q Consensus 138 ~~~ 140 (177)
.++
T Consensus 154 ~l~ 156 (157)
T cd00882 154 ELA 156 (157)
T ss_pred HHh
Confidence 875
No 154
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.47 E-value=2.6e-07 Score=80.16 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=48.9
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~ 143 (177)
.+.|+++|+||+|+.+++.+. .+...+++..+++++++||++|.|++++|..+++.+
T Consensus 98 ~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 98 LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999997665554 356788899999999999999999999999998753
No 155
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.45 E-value=5.1e-07 Score=63.63 Aligned_cols=76 Identities=21% Similarity=0.055 Sum_probs=52.0
Q ss_pred cccchh-hhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416 61 CTVLNE-CAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137 (177)
Q Consensus 61 ~dit~~-~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~ 137 (177)
+|++.. .++.... |...+..... .+.|+++|+||+|+...+ +.......+......+++++||++|.|++++|.
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~ 157 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE--SNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFK 157 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc--cCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHH
Confidence 555555 5555542 6554422221 278999999999997644 444444555555567899999999999999998
Q ss_pred HH
Q psy1416 138 AI 139 (177)
Q Consensus 138 ~~ 139 (177)
.+
T Consensus 158 ~l 159 (161)
T TIGR00231 158 IV 159 (161)
T ss_pred Hh
Confidence 75
No 156
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.45 E-value=3.5e-07 Score=65.13 Aligned_cols=51 Identities=22% Similarity=0.214 Sum_probs=40.1
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEMFMAITNL 142 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~f~~~~~~ 142 (177)
+.|+++|+||+|+...... .......+. .++++||++|.||+++|..+++.
T Consensus 105 ~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 105 KKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred CCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 5899999999999764322 223334565 78999999999999999999865
No 157
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.45 E-value=4.2e-07 Score=76.31 Aligned_cols=74 Identities=15% Similarity=0.003 Sum_probs=56.4
Q ss_pred ccccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q psy1416 60 VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139 (177)
Q Consensus 60 ~~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~ 139 (177)
+.|+++..|+... |+..+. ..+.|+++|+||+||... +...+++.++.+|+++||++ .||+++|..+
T Consensus 289 V~D~s~~~s~~~~-~l~~~~-----~~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L 355 (442)
T TIGR00450 289 VLDASQPLTKDDF-LIIDLN-----KSKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLL 355 (442)
T ss_pred EEECCCCCChhHH-HHHHHh-----hCCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CCHHHHHHHH
Confidence 4677777777765 765442 136799999999999643 22456677788999999998 6999999999
Q ss_pred HHHHHHH
Q psy1416 140 TNLVLRS 146 (177)
Q Consensus 140 ~~~~~~~ 146 (177)
.+.+.+.
T Consensus 356 ~~~i~~~ 362 (442)
T TIGR00450 356 TQKINAF 362 (442)
T ss_pred HHHHHHH
Confidence 9988764
No 158
>PRK15494 era GTPase Era; Provisional
Probab=98.44 E-value=4.4e-07 Score=73.74 Aligned_cols=74 Identities=18% Similarity=0.073 Sum_probs=53.0
Q ss_pred cchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC--CcEEEecCCCCCCHHHHHHH
Q psy1416 63 VLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG--IQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 63 it~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~--~~~~e~Sak~~~~v~~~f~~ 138 (177)
++...+|.... |+..+.. .+.|++||+||+||... ...+..+++...+ ..+|++||++|.||+++|..
T Consensus 139 vD~~~s~~~~~~~il~~l~~-----~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~ 210 (339)
T PRK15494 139 IDSLKSFDDITHNILDKLRS-----LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEY 210 (339)
T ss_pred EECCCCCCHHHHHHHHHHHh-----cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHH
Confidence 45566777774 5544421 14567889999999643 2455666666554 57999999999999999999
Q ss_pred HHHHHH
Q psy1416 139 ITNLVL 144 (177)
Q Consensus 139 ~~~~~~ 144 (177)
++..+.
T Consensus 211 L~~~l~ 216 (339)
T PRK15494 211 ITSKAK 216 (339)
T ss_pred HHHhCC
Confidence 988764
No 159
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.39 E-value=3.9e-07 Score=74.34 Aligned_cols=75 Identities=16% Similarity=-0.036 Sum_probs=50.5
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
..|++++.++..+. |...+.... ..+.|+++|+||+|+.....+ ..+ .....+++++||++|.||+++|..
T Consensus 275 VvD~s~~~~~~~~~~~~~~L~~l~--~~~~piIlV~NK~Dl~~~~~v-----~~~-~~~~~~~i~iSAktg~GI~eL~~~ 346 (351)
T TIGR03156 275 VVDASDPDREEQIEAVEKVLEELG--AEDIPQLLVYNKIDLLDEPRI-----ERL-EEGYPEAVFVSAKTGEGLDLLLEA 346 (351)
T ss_pred EEECCCCchHHHHHHHHHHHHHhc--cCCCCEEEEEEeecCCChHhH-----HHH-HhCCCCEEEEEccCCCCHHHHHHH
Confidence 36777777777664 554432111 236799999999999653222 111 122346899999999999999998
Q ss_pred HHHH
Q psy1416 139 ITNL 142 (177)
Q Consensus 139 ~~~~ 142 (177)
+.+.
T Consensus 347 I~~~ 350 (351)
T TIGR03156 347 IAER 350 (351)
T ss_pred HHhh
Confidence 8754
No 160
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.39 E-value=1e-06 Score=63.55 Aligned_cols=77 Identities=16% Similarity=0.063 Sum_probs=49.1
Q ss_pred cccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHH-HHHHc----CCcEEEecCCCCCCHHHH
Q psy1416 61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQR-FANQM----GIQLFETSAKDNINVEEM 135 (177)
Q Consensus 61 ~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~-~a~~~----~~~~~e~Sak~~~~v~~~ 135 (177)
.|.++..++....++..+. ..+.|+++|+||+|+...+....++... ..+.. ..+++++||+++.|++++
T Consensus 92 ~d~~~~~~~~~~~~~~~~~-----~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (174)
T cd01895 92 IDATEGITEQDLRIAGLIL-----EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKL 166 (174)
T ss_pred EeCCCCcchhHHHHHHHHH-----hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHH
Confidence 5555555554433322221 1257999999999997654222332222 22333 368999999999999999
Q ss_pred HHHHHHH
Q psy1416 136 FMAITNL 142 (177)
Q Consensus 136 f~~~~~~ 142 (177)
|..+.+.
T Consensus 167 ~~~l~~~ 173 (174)
T cd01895 167 FDAIDEV 173 (174)
T ss_pred HHHHHHh
Confidence 9988763
No 161
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.38 E-value=1e-06 Score=72.87 Aligned_cols=84 Identities=15% Similarity=0.080 Sum_probs=57.6
Q ss_pred cccc---hhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC--CcEEEecCCCCCCHHH
Q psy1416 61 CTVL---NECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG--IQLFETSAKDNINVEE 134 (177)
Q Consensus 61 ~dit---~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~--~~~~e~Sak~~~~v~~ 134 (177)
.|++ +.+.+.... |++++..........|++||+||+|+.....+ .+....+.+..+ ..++.+||+++.+|++
T Consensus 245 VD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIde 323 (390)
T PRK12298 245 IDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASGLGVKE 323 (390)
T ss_pred eccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCCcCHHH
Confidence 4555 455666665 77766422211235799999999999754333 234444555544 4689999999999999
Q ss_pred HHHHHHHHHHH
Q psy1416 135 MFMAITNLVLR 145 (177)
Q Consensus 135 ~f~~~~~~~~~ 145 (177)
++..+++.+.+
T Consensus 324 Ll~~I~~~L~~ 334 (390)
T PRK12298 324 LCWDLMTFIEE 334 (390)
T ss_pred HHHHHHHHhhh
Confidence 99999988764
No 162
>KOG0097|consensus
Probab=98.37 E-value=5.8e-07 Score=63.30 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=30.9
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 34 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~~~ 34 (177)
+|+.|+|+|||+|.||+++|...++.|+++.+..
T Consensus 146 ngl~fle~saktg~nvedafle~akkiyqniqdg 179 (215)
T KOG0097|consen 146 NGLMFLEASAKTGQNVEDAFLETAKKIYQNIQDG 179 (215)
T ss_pred cCeEEEEecccccCcHHHHHHHHHHHHHHhhhcC
Confidence 4789999999999999999999999999987653
No 163
>KOG0098|consensus
Probab=98.34 E-value=4.7e-07 Score=66.57 Aligned_cols=34 Identities=35% Similarity=0.497 Sum_probs=30.9
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 34 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~~~ 34 (177)
||+.|+|||||++.||+|||...+..|+++.+..
T Consensus 141 hgLifmETSakt~~~VEEaF~nta~~Iy~~~q~g 174 (216)
T KOG0098|consen 141 HGLIFMETSAKTAENVEEAFINTAKEIYRKIQDG 174 (216)
T ss_pred cCceeehhhhhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999876543
No 164
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.34 E-value=8.3e-07 Score=63.06 Aligned_cols=68 Identities=16% Similarity=0.042 Sum_probs=48.5
Q ss_pred cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q psy1416 61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139 (177)
Q Consensus 61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~ 139 (177)
.|++++.++.... |.. ....|+++|+||+|+.+.... .....+.+++++||+++.|+++++..+
T Consensus 88 ~d~~~~~~~~~~~~~~~--------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l 152 (157)
T cd04164 88 IDASRGLDEEDLEILEL--------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLDELKEAL 152 (157)
T ss_pred EECCCCCCHHHHHHHHh--------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHHHHHHHH
Confidence 5555555555443 211 246899999999999754432 334456789999999999999999998
Q ss_pred HHHH
Q psy1416 140 TNLV 143 (177)
Q Consensus 140 ~~~~ 143 (177)
...+
T Consensus 153 ~~~~ 156 (157)
T cd04164 153 LELA 156 (157)
T ss_pred HHhh
Confidence 7643
No 165
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.33 E-value=6.5e-07 Score=75.36 Aligned_cols=69 Identities=19% Similarity=0.076 Sum_probs=49.9
Q ss_pred cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q psy1416 61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139 (177)
Q Consensus 61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~ 139 (177)
.|.++..++.... |.. ..+.|+++|+||+||...+.+. ...+.+++++||++|.||+++|..+
T Consensus 302 vD~s~~~s~~~~~~l~~--------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L 365 (449)
T PRK05291 302 LDASEPLTEEDDEILEE--------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGIDELREAI 365 (449)
T ss_pred ecCCCCCChhHHHHHHh--------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCHHHHHHHH
Confidence 5555665555444 321 2368999999999997543321 3445689999999999999999999
Q ss_pred HHHHHH
Q psy1416 140 TNLVLR 145 (177)
Q Consensus 140 ~~~~~~ 145 (177)
.+.+..
T Consensus 366 ~~~l~~ 371 (449)
T PRK05291 366 KELAFG 371 (449)
T ss_pred HHHHhh
Confidence 987753
No 166
>PRK00098 GTPase RsgA; Reviewed
Probab=98.32 E-value=6.6e-07 Score=71.46 Aligned_cols=76 Identities=14% Similarity=0.078 Sum_probs=55.0
Q ss_pred ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416 60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137 (177)
Q Consensus 60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~ 137 (177)
+.|++++.++... . |+..+.. .++|++||+||+||.+.+. ...+...+.+..+++++.+||+++.|++++|.
T Consensus 87 V~d~~~p~~~~~~idr~L~~~~~-----~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~ 160 (298)
T PRK00098 87 VFAAKEPDFSTDLLDRFLVLAEA-----NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGEGLDELKP 160 (298)
T ss_pred EEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCccHHHHHh
Confidence 4788888777665 4 7755421 3689999999999964322 12233445566788999999999999999998
Q ss_pred HHHH
Q psy1416 138 AITN 141 (177)
Q Consensus 138 ~~~~ 141 (177)
.+..
T Consensus 161 ~l~g 164 (298)
T PRK00098 161 LLAG 164 (298)
T ss_pred hccC
Confidence 7753
No 167
>PRK12288 GTPase RsgA; Reviewed
Probab=98.32 E-value=1.2e-06 Score=71.27 Aligned_cols=78 Identities=19% Similarity=0.205 Sum_probs=55.8
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCc-cCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKV-VLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~-v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~ 137 (177)
+++++...||..+. |+..+. ..++|++||+||+||..... ....+.....+..+++++++||+++.|++++|.
T Consensus 127 V~s~~p~~s~~~Ldr~L~~a~-----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~GideL~~ 201 (347)
T PRK12288 127 VSAVLPELSLNIIDRYLVACE-----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGLEELEA 201 (347)
T ss_pred EEeCCCCCCHHHHHHHHHHHH-----hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCHHHHHH
Confidence 36677888888887 975442 13688999999999964321 111222333456788999999999999999998
Q ss_pred HHHHH
Q psy1416 138 AITNL 142 (177)
Q Consensus 138 ~~~~~ 142 (177)
.+...
T Consensus 202 ~L~~k 206 (347)
T PRK12288 202 ALTGR 206 (347)
T ss_pred HHhhC
Confidence 88654
No 168
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.30 E-value=1.4e-06 Score=62.85 Aligned_cols=57 Identities=21% Similarity=0.224 Sum_probs=38.7
Q ss_pred CCcEEEEeeCCCCcCCCccCH-HHHHHHHH------HcCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLT-EDAQRFAN------QMGIQLFETSAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~-~~~~~~a~------~~~~~~~e~Sak~~~~v~~~f~~~~~~~ 143 (177)
+.|+++|+||+|+.....-.. +....+.. ....+++++||++|.||+++|..+.+..
T Consensus 102 ~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 102 NVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred CCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 679999999999964321111 11111111 1136799999999999999999998754
No 169
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.30 E-value=1.7e-06 Score=72.22 Aligned_cols=58 Identities=19% Similarity=0.099 Sum_probs=40.9
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHH-HHH----cCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRF-ANQ----MGIQLFETSAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~-a~~----~~~~~~e~Sak~~~~v~~~f~~~~~~~~~ 145 (177)
+.|+++|+||+||.... ...++.... ... .+++++++||++|.||+++|..+.+.+..
T Consensus 283 ~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 283 GKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred CCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 68999999999997211 112222222 122 24789999999999999999999886654
No 170
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.29 E-value=1.5e-06 Score=73.73 Aligned_cols=60 Identities=25% Similarity=0.229 Sum_probs=45.0
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~ 146 (177)
...|++||+||+||.+.+.+. +.........++++|++||+++.||++++..|++.+...
T Consensus 283 ~~kP~IVVlNKiDL~da~el~-e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 283 AERPRLVVLNKIDVPDARELA-EFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred cCCCEEEEEECccchhhHHHH-HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 367999999999997543322 222223344578999999999999999999999887654
No 171
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.28 E-value=1e-06 Score=69.99 Aligned_cols=75 Identities=15% Similarity=0.021 Sum_probs=55.0
Q ss_pred ccccchhh-hhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416 60 VCTVLNEC-AWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137 (177)
Q Consensus 60 ~~dit~~~-Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~ 137 (177)
.+|++++. |+..+. |+..+.. .++|++||+||+||.... .......+....+.+++.+||+++.|+++++.
T Consensus 85 V~d~~~p~~s~~~ldr~L~~~~~-----~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~ 157 (287)
T cd01854 85 VVSLNEPFFNPRLLDRYLVAAEA-----AGIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAKTGEGLDELRE 157 (287)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHH-----cCCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECCCCccHHHHHh
Confidence 37777777 788776 8865531 268999999999996542 11222333455788999999999999999998
Q ss_pred HHHH
Q psy1416 138 AITN 141 (177)
Q Consensus 138 ~~~~ 141 (177)
.+..
T Consensus 158 ~L~~ 161 (287)
T cd01854 158 YLKG 161 (287)
T ss_pred hhcc
Confidence 8764
No 172
>PRK11058 GTPase HflX; Provisional
Probab=98.28 E-value=1.7e-06 Score=72.39 Aligned_cols=79 Identities=16% Similarity=-0.032 Sum_probs=53.6
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCc-EEEecCCCCCCHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ-LFETSAKDNINVEEMFM 137 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sak~~~~v~~~f~ 137 (177)
+.|.+++.++.++. |...+.... ..+.|+++|+||+|+..... ... . ....+.+ ++++||++|.||+++|.
T Consensus 283 VvDaS~~~~~e~l~~v~~iL~el~--~~~~pvIiV~NKiDL~~~~~-~~~---~-~~~~~~~~~v~ISAktG~GIdeL~e 355 (426)
T PRK11058 283 VVDAADVRVQENIEAVNTVLEEID--AHEIPTLLVMNKIDMLDDFE-PRI---D-RDEENKPIRVWLSAQTGAGIPLLFQ 355 (426)
T ss_pred EEeCCCccHHHHHHHHHHHHHHhc--cCCCCEEEEEEcccCCCchh-HHH---H-HHhcCCCceEEEeCCCCCCHHHHHH
Confidence 47888888888774 433332111 13689999999999964311 111 1 1124555 58999999999999999
Q ss_pred HHHHHHHH
Q psy1416 138 AITNLVLR 145 (177)
Q Consensus 138 ~~~~~~~~ 145 (177)
.+.+.+..
T Consensus 356 ~I~~~l~~ 363 (426)
T PRK11058 356 ALTERLSG 363 (426)
T ss_pred HHHHHhhh
Confidence 99988754
No 173
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.28 E-value=3.8e-06 Score=61.86 Aligned_cols=80 Identities=15% Similarity=0.065 Sum_probs=55.5
Q ss_pred cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHH------cCCcEEEecCCCCCCHH
Q psy1416 61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ------MGIQLFETSAKDNINVE 133 (177)
Q Consensus 61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~------~~~~~~e~Sak~~~~v~ 133 (177)
.|.++.+.|.... .+..+.... ...++|+++++||.|+.+ .++.++....... ..+..+.+||++|+||.
T Consensus 89 vDssd~~~l~e~~~~L~~ll~~~-~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~ 165 (175)
T PF00025_consen 89 VDSSDPERLQEAKEELKELLNDP-ELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVD 165 (175)
T ss_dssp EETTGGGGHHHHHHHHHHHHTSG-GGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHH
T ss_pred Eecccceeecccccchhhhcchh-hcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHH
Confidence 6666777666664 555442221 224799999999999874 3455555544332 23458899999999999
Q ss_pred HHHHHHHHHH
Q psy1416 134 EMFMAITNLV 143 (177)
Q Consensus 134 ~~f~~~~~~~ 143 (177)
+.|..|.+.|
T Consensus 166 e~l~WL~~~~ 175 (175)
T PF00025_consen 166 EGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 9999998764
No 174
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.26 E-value=2.3e-06 Score=65.95 Aligned_cols=51 Identities=24% Similarity=0.096 Sum_probs=41.1
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~ 143 (177)
..+|+++|+||+|+. ..+++..++.. ..++++||++|.|++++|..+.+.+
T Consensus 175 ~y~p~iiV~NK~Dl~-----~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 175 VYIPCLYVYNKIDLI-----SIEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred eEeeEEEEEECccCC-----CHHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 357999999999985 34555566654 3589999999999999999998754
No 175
>KOG1673|consensus
Probab=98.25 E-value=1.2e-06 Score=62.73 Aligned_cols=84 Identities=19% Similarity=0.223 Sum_probs=65.3
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcC--CCc---cCHHHHHHHHHHcCCcEEEecCCCCCCHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQ--KKV---VLTEDAQRFANQMGIQLFETSAKDNINVE 133 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~--~~~---v~~~~~~~~a~~~~~~~~e~Sak~~~~v~ 133 (177)
..|+|.+.++.++. |+++. ++....+.-||||+|.|+-- .+. --..+++.+|+-.++..|.+|+..+.||.
T Consensus 99 mFDLt~r~TLnSi~~WY~QA---r~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~ 175 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKEWYRQA---RGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQ 175 (205)
T ss_pred EEecCchHHHHHHHHHHHHH---hccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHH
Confidence 38999999999997 98655 33334455589999999731 111 11347788999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1416 134 EMFMAITNLVLRS 146 (177)
Q Consensus 134 ~~f~~~~~~~~~~ 146 (177)
.+|.-+..++...
T Consensus 176 KIFK~vlAklFnL 188 (205)
T KOG1673|consen 176 KIFKIVLAKLFNL 188 (205)
T ss_pred HHHHHHHHHHhCC
Confidence 9999998888754
No 176
>KOG0080|consensus
Probab=98.25 E-value=1.1e-06 Score=63.17 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=27.9
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNLVLRS 30 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~ 30 (177)
|++.|+|+|||+..||+.+|+.|+.+|++-
T Consensus 147 h~~LFiE~SAkt~~~V~~~FeelveKIi~t 176 (209)
T KOG0080|consen 147 HRCLFIECSAKTRENVQCCFEELVEKIIET 176 (209)
T ss_pred hCcEEEEcchhhhccHHHHHHHHHHHHhcC
Confidence 578999999999999999999999999864
No 177
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.24 E-value=4.9e-06 Score=61.93 Aligned_cols=57 Identities=30% Similarity=0.312 Sum_probs=42.1
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHH-----HHcCC---cEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFA-----NQMGI---QLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a-----~~~~~---~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
+.|++||+||+||.... ...+....+. +..+. .++.+||++|.||+++|..+.+.+.
T Consensus 61 ~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 61 NNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 57999999999996532 3344444444 23333 5899999999999999999988663
No 178
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.21 E-value=2.8e-06 Score=66.90 Aligned_cols=57 Identities=19% Similarity=0.072 Sum_probs=42.6
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
+.|+++|+||+|+..... ..+....++...+. +++++||++|.||++++..+.+.+.
T Consensus 107 ~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~ 164 (270)
T TIGR00436 107 KRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLP 164 (270)
T ss_pred CCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCC
Confidence 679999999999964322 22344455555444 7999999999999999999877654
No 179
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.20 E-value=2.1e-06 Score=64.76 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=40.4
Q ss_pred CcEEEEeeCCCCcCCCcc--CHHHHHHHHHHc---CCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416 88 SGLRLVGNKNDDPQKKVV--LTEDAQRFANQM---GIQLFETSAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 88 ~~~ilvgnK~Dl~~~~~v--~~~~~~~~a~~~---~~~~~e~Sak~~~~v~~~f~~~~~~~ 143 (177)
.|++||+||+||...... ..++...+...+ +.+++++||++|.||+++|..+.+.+
T Consensus 138 ~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 138 KHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred CcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 478999999999643211 123344444433 56799999999999999999988654
No 180
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.20 E-value=1.8e-06 Score=73.18 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=49.8
Q ss_pred cccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q psy1416 61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140 (177)
Q Consensus 61 ~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~ 140 (177)
.|+++..++....|...+. . .+.|++||+||+|+... ..+....+....+ ..+++||++|.||+++|..++
T Consensus 125 vD~~~~~s~~~~~i~~~l~-~----~~~piilV~NK~Dl~~~---~~~~~~~~~~g~~-~~~~iSA~~g~gi~eL~~~i~ 195 (472)
T PRK03003 125 VDATVGATATDEAVARVLR-R----SGKPVILAANKVDDERG---EADAAALWSLGLG-EPHPVSALHGRGVGDLLDAVL 195 (472)
T ss_pred EECCCCCCHHHHHHHHHHH-H----cCCCEEEEEECccCCcc---chhhHHHHhcCCC-CeEEEEcCCCCCcHHHHHHHH
Confidence 6666665554333443332 1 36899999999999642 1222222322222 357999999999999999999
Q ss_pred HHHHH
Q psy1416 141 NLVLR 145 (177)
Q Consensus 141 ~~~~~ 145 (177)
..+.+
T Consensus 196 ~~l~~ 200 (472)
T PRK03003 196 AALPE 200 (472)
T ss_pred hhccc
Confidence 88755
No 181
>PRK12289 GTPase RsgA; Reviewed
Probab=98.20 E-value=2.1e-06 Score=70.07 Aligned_cols=76 Identities=17% Similarity=0.066 Sum_probs=51.0
Q ss_pred ccccchhh-hhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416 60 VCTVLNEC-AWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137 (177)
Q Consensus 60 ~~dit~~~-Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~ 137 (177)
.+|++++. ++..+. |+..+. ..++|++||+||+||.....+ +........+++.++.+||+++.||++++.
T Consensus 96 V~d~~~p~~~~~~LdR~L~~a~-----~~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~iSA~tg~GI~eL~~ 168 (352)
T PRK12289 96 VFALAEPPLDPWQLSRFLVKAE-----STGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFISVETGIGLEALLE 168 (352)
T ss_pred EEECCCCCCCHHHHHHHHHHHH-----HCCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEEEcCCCCCHHHHhh
Confidence 47777654 333444 664331 136899999999999643211 122223346788999999999999999998
Q ss_pred HHHHH
Q psy1416 138 AITNL 142 (177)
Q Consensus 138 ~~~~~ 142 (177)
.+...
T Consensus 169 ~L~~k 173 (352)
T PRK12289 169 QLRNK 173 (352)
T ss_pred hhccc
Confidence 88754
No 182
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.18 E-value=6.3e-06 Score=67.55 Aligned_cols=65 Identities=23% Similarity=0.256 Sum_probs=47.3
Q ss_pred hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHH----HHHcCC---cEEEecCCCCCCHHHHHHHHHHH
Q psy1416 74 WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRF----ANQMGI---QLFETSAKDNINVEEMFMAITNL 142 (177)
Q Consensus 74 w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~----a~~~~~---~~~e~Sak~~~~v~~~f~~~~~~ 142 (177)
|..++.... .+.|++||+||+||.. +.+..++...| ++++++ .++++||++|.||+++|..+.+.
T Consensus 80 ~~~~l~~~~---~~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 80 LIPELKRFV---GGNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred ccHHHHHHh---CCCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 776663221 2578999999999965 34445555543 566776 48999999999999999988653
No 183
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.16 E-value=4.8e-06 Score=72.36 Aligned_cols=76 Identities=20% Similarity=0.114 Sum_probs=53.1
Q ss_pred cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCc---EEEecCCCCCCHHHHH
Q psy1416 61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ---LFETSAKDNINVEEMF 136 (177)
Q Consensus 61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~---~~e~Sak~~~~v~~~f 136 (177)
.|.++..++.... |...+. .++|+++|+||+|+.... ..+...++++.+++. ++++||++|.||+++|
T Consensus 101 vDat~g~~~qt~~~~~~~~~------~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Ll 172 (595)
T TIGR01393 101 VDAAQGIEAQTLANVYLALE------NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASEAILASAKTGIGIEEIL 172 (595)
T ss_pred ecCCCCCCHhHHHHHHHHHH------cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHH
Confidence 5666655555554 533221 367999999999996432 223345566666653 8999999999999999
Q ss_pred HHHHHHHH
Q psy1416 137 MAITNLVL 144 (177)
Q Consensus 137 ~~~~~~~~ 144 (177)
..+++.+.
T Consensus 173 e~I~~~lp 180 (595)
T TIGR01393 173 EAIVKRVP 180 (595)
T ss_pred HHHHHhCC
Confidence 99987764
No 184
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.13 E-value=4.7e-06 Score=61.13 Aligned_cols=58 Identities=19% Similarity=0.170 Sum_probs=42.0
Q ss_pred CCCcEEEEeeCCCCcCCCcc--CHHHHHHHHHH--------------cCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVV--LTEDAQRFANQ--------------MGIQLFETSAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v--~~~~~~~~a~~--------------~~~~~~e~Sak~~~~v~~~f~~~~~~~ 143 (177)
.+.|+++|+||+|+.....+ ..++..+..+. ...+++++||++|.|++++|..+.+.+
T Consensus 113 ~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 113 GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 37899999999999753221 12233333333 346799999999999999999988765
No 185
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.12 E-value=4.1e-06 Score=72.66 Aligned_cols=76 Identities=16% Similarity=0.102 Sum_probs=52.8
Q ss_pred cccch---hhhhcccchhhhhhhhhccCCCCc-EEEEeeCCCCcCCCcc--CHHHHHHHHHHc----CCcEEEecCCCCC
Q psy1416 61 CTVLN---ECAWLGCGWMTICPIIYCWLFPSG-LRLVGNKNDDPQKKVV--LTEDAQRFANQM----GIQLFETSAKDNI 130 (177)
Q Consensus 61 ~dit~---~~Sf~~~~w~~~~~~~~~~~~~~~-~ilvgnK~Dl~~~~~v--~~~~~~~~a~~~----~~~~~e~Sak~~~ 130 (177)
.|.++ .++++++.|+... ++| +++|+||+|+.+...+ ..++...+.... +++++++||++|.
T Consensus 81 VDa~~G~~~qT~ehl~il~~l--------gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~ 152 (581)
T TIGR00475 81 VDADEGVMTQTGEHLAVLDLL--------GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQ 152 (581)
T ss_pred EECCCCCcHHHHHHHHHHHHc--------CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCC
Confidence 55555 5666665543222 566 9999999999764432 234555666554 4789999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy1416 131 NVEEMFMAITNLVL 144 (177)
Q Consensus 131 ~v~~~f~~~~~~~~ 144 (177)
||++++..+...+.
T Consensus 153 GI~eL~~~L~~l~~ 166 (581)
T TIGR00475 153 GIGELKKELKNLLE 166 (581)
T ss_pred CchhHHHHHHHHHH
Confidence 99999988876543
No 186
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.11 E-value=6.8e-06 Score=62.16 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=42.0
Q ss_pred CcEEEEeeCCCCcCCCccCHHHHHHHHHHcC--CcEEEecCCCCCCHHHHHHHHHHH
Q psy1416 88 SGLRLVGNKNDDPQKKVVLTEDAQRFANQMG--IQLFETSAKDNINVEEMFMAITNL 142 (177)
Q Consensus 88 ~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~--~~~~e~Sak~~~~v~~~f~~~~~~ 142 (177)
.|.++|+||+|+........++.....++.+ .+++++||++|.||+++|..+.+.
T Consensus 149 ~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 149 EADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999997543333444555555544 789999999999999999998764
No 187
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.10 E-value=4.9e-06 Score=61.98 Aligned_cols=58 Identities=21% Similarity=0.087 Sum_probs=41.2
Q ss_pred CCcEEEEeeCCCCcCCC--ccCHHHHHHHHH-------HcCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKK--VVLTEDAQRFAN-------QMGIQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~--~v~~~~~~~~a~-------~~~~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
+.|+++|+||+|+.... ....++...... ..+++++.+||++|.|+++++..+...+.
T Consensus 120 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 120 CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 56999999999996322 112223322211 13578999999999999999999988765
No 188
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.09 E-value=8.8e-06 Score=61.33 Aligned_cols=53 Identities=19% Similarity=-0.008 Sum_probs=39.3
Q ss_pred EEEeeCCCCcCCCccCHHHHHHHHHH--cCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416 91 RLVGNKNDDPQKKVVLTEDAQRFANQ--MGIQLFETSAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 91 ilvgnK~Dl~~~~~v~~~~~~~~a~~--~~~~~~e~Sak~~~~v~~~f~~~~~~~ 143 (177)
++|+||+|+.....-..+...+.++. .+.++|++||++|.||+++|..+.+.+
T Consensus 141 ~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 141 LLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred EEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 89999999974211223344444444 457899999999999999999998654
No 189
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.03 E-value=1e-05 Score=57.64 Aligned_cols=56 Identities=25% Similarity=0.203 Sum_probs=41.6
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC-CcEEEecCCCCCCHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNL 142 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~~f~~~~~~ 142 (177)
..|+++|+||+|+........+....++...+ .+++++|++++.+++++|..+.+.
T Consensus 111 ~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 111 KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 57899999999997433322333444444443 689999999999999999988754
No 190
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.02 E-value=1.2e-05 Score=59.69 Aligned_cols=57 Identities=14% Similarity=0.067 Sum_probs=42.3
Q ss_pred CCcEEEEeeCCCCcCCCc--cCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKV--VLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~--v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~ 143 (177)
+.|+++|+||+|+..... ...++...+.......++++||++|.|++++|..+.+.+
T Consensus 135 ~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 135 GIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 678999999999965322 122334444444467899999999999999999887655
No 191
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.02 E-value=7.9e-06 Score=57.45 Aligned_cols=57 Identities=18% Similarity=0.055 Sum_probs=41.6
Q ss_pred CCCcEEEEeeCCCCcCCCccCHH---HHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTE---DAQRFANQMGIQLFETSAKDNINVEEMFMAITNL 142 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~---~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~ 142 (177)
...|+++|+||+|+.....+... .........+.+++++||+++.|+++++..+.+.
T Consensus 103 ~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 103 RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 47899999999999754322211 1223333456789999999999999999988764
No 192
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.98 E-value=2.2e-06 Score=58.68 Aligned_cols=63 Identities=19% Similarity=0.046 Sum_probs=44.3
Q ss_pred ccccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHH
Q psy1416 60 VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVE 133 (177)
Q Consensus 60 ~~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~ 133 (177)
+.|+++++||.++ |+..+.. ....++|++++|||.|+...+.+..+++ ..|+++||++|.||.
T Consensus 53 v~~~~~~~s~~~~-~~~~i~~--~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 53 CWRVDDRDSADNK-NVPEVLV--GNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred EEEccCHHHHHHH-hHHHHHh--cCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence 4778888888776 8765532 2234689999999999965444444333 356788999999984
No 193
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.96 E-value=1.4e-05 Score=57.54 Aligned_cols=56 Identities=27% Similarity=0.270 Sum_probs=41.0
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
+.|+++|.||+|+...... .....+....+.+++.+||+++.|+++++..+.+.+.
T Consensus 41 ~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 41 GKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred CCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEEEccccccHHHHHHHHHHHHh
Confidence 5799999999999532111 1111233445678999999999999999998887664
No 194
>PRK13796 GTPase YqeH; Provisional
Probab=97.94 E-value=3.3e-05 Score=63.48 Aligned_cols=65 Identities=25% Similarity=0.362 Sum_probs=46.3
Q ss_pred hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHH----HHHcCC---cEEEecCCCCCCHHHHHHHHHHH
Q psy1416 74 WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRF----ANQMGI---QLFETSAKDNINVEEMFMAITNL 142 (177)
Q Consensus 74 w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~----a~~~~~---~~~e~Sak~~~~v~~~f~~~~~~ 142 (177)
|...+.... .+.|++||+||+||.. +.+..++...| ++.+++ .++.+||+++.||+++|..+.+.
T Consensus 86 ~~~~L~~~~---~~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 86 WIPGLHRFV---GNNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred hhHHHHHHh---CCCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 666553222 2568999999999964 33444444444 555665 57999999999999999998654
No 195
>PRK00089 era GTPase Era; Reviewed
Probab=97.93 E-value=2.3e-05 Score=62.26 Aligned_cols=58 Identities=24% Similarity=0.201 Sum_probs=44.3
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC-CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
+.|+++|+||+|+...+.........+.+..+ ..++.+||+++.|+++++..+.+.+.
T Consensus 113 ~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 113 KTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred CCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence 57999999999997433333344555555444 57999999999999999999988764
No 196
>KOG0094|consensus
Probab=97.93 E-value=8.7e-06 Score=60.39 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=27.5
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSK 31 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~ 31 (177)
+|+.|+|||||+|.||..+|..++..+...+
T Consensus 158 l~a~f~etsak~g~NVk~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 158 LNAEFIETSAKAGENVKQLFRRIAAALPGME 188 (221)
T ss_pred hCcEEEEecccCCCCHHHHHHHHHHhccCcc
Confidence 4678999999999999999999999887654
No 197
>KOG0086|consensus
Probab=97.91 E-value=1.2e-05 Score=57.50 Aligned_cols=32 Identities=31% Similarity=0.415 Sum_probs=28.8
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVLRSKKE 33 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~~ 33 (177)
.+.|+||||++|.||+|+|...++.|+.+...
T Consensus 145 el~flETSa~TGeNVEEaFl~c~~tIl~kIE~ 176 (214)
T KOG0086|consen 145 ELMFLETSALTGENVEEAFLKCARTILNKIES 176 (214)
T ss_pred ceeeeeecccccccHHHHHHHHHHHHHHHHhh
Confidence 36799999999999999999999999987654
No 198
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=97.91 E-value=5.7e-06 Score=59.92 Aligned_cols=52 Identities=25% Similarity=0.395 Sum_probs=41.9
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~ 139 (177)
+.|+++|.||+|+..++.+.. +...+.+..+++.+.+||+++.|+++++..+
T Consensus 105 g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 105 GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 689999999999875444333 4667888899999999999999999998764
No 199
>KOG0081|consensus
Probab=97.91 E-value=1.9e-05 Score=56.79 Aligned_cols=36 Identities=33% Similarity=0.451 Sum_probs=32.3
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKE 36 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~~~~~ 36 (177)
+|+|||||||-+|.||+++.+.|...|++++.....
T Consensus 154 yglPYfETSA~tg~Nv~kave~LldlvM~Rie~~v~ 189 (219)
T KOG0081|consen 154 YGLPYFETSACTGTNVEKAVELLLDLVMKRIEQCVE 189 (219)
T ss_pred hCCCeeeeccccCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999998765543
No 200
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.90 E-value=2.9e-05 Score=67.44 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=39.4
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC---------CcEEEecCCCCCCHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG---------IQLFETSAKDNINVEEMFMAITN 141 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~---------~~~~e~Sak~~~~v~~~f~~~~~ 141 (177)
.++|+++++||+|+... ..++.......++ .+|+++||++|.||+++|..+..
T Consensus 186 ~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 186 ANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred cCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 36899999999999642 2344444433332 46999999999999999998874
No 201
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.88 E-value=2.2e-05 Score=69.73 Aligned_cols=78 Identities=15% Similarity=0.030 Sum_probs=49.4
Q ss_pred cccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHH-HHHHc----CCcEEEecCCCCCCHHHH
Q psy1416 61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQR-FANQM----GIQLFETSAKDNINVEEM 135 (177)
Q Consensus 61 ~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~-~a~~~----~~~~~e~Sak~~~~v~~~ 135 (177)
.|.++..++..+.|+..+. ..+.|++||+||+||.+... .+.... +.... ..+.+.+||++|.||+++
T Consensus 540 iDat~~~s~~~~~i~~~~~-----~~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L 612 (712)
T PRK09518 540 FDASQPISEQDLKVMSMAV-----DAGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRL 612 (712)
T ss_pred EECCCCCCHHHHHHHHHHH-----HcCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHH
Confidence 4555555555554333221 13689999999999964321 111111 11111 246789999999999999
Q ss_pred HHHHHHHHHH
Q psy1416 136 FMAITNLVLR 145 (177)
Q Consensus 136 f~~~~~~~~~ 145 (177)
|..+.+.+.+
T Consensus 613 ~~~i~~~~~~ 622 (712)
T PRK09518 613 APAMQEALES 622 (712)
T ss_pred HHHHHHHHHH
Confidence 9999987765
No 202
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.87 E-value=2.1e-05 Score=59.40 Aligned_cols=30 Identities=40% Similarity=0.758 Sum_probs=27.0
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVLRSK 31 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~ 31 (177)
++.|+|||||+|.||+++|..|++.+++..
T Consensus 137 ~~~~~etSAktg~gV~e~F~~l~~~~~~~~ 166 (202)
T cd04120 137 GMRFCEASAKDNFNVDEIFLKLVDDILKKM 166 (202)
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHhC
Confidence 578999999999999999999999887653
No 203
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.86 E-value=2.3e-05 Score=65.62 Aligned_cols=58 Identities=21% Similarity=0.129 Sum_probs=40.1
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHH----cCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQ----MGIQLFETSAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~----~~~~~~e~Sak~~~~v~~~f~~~~~~~~~ 145 (177)
..|+++|+||+|+.+... ..+....+... ..++++++||++|.||+++|..+.+....
T Consensus 284 ~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 284 GRALVIVVNKWDLVDEKT-MEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred CCcEEEEEECccCCCHHH-HHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 579999999999974321 11111112222 24789999999999999999998875543
No 204
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=97.81 E-value=3.3e-05 Score=64.45 Aligned_cols=57 Identities=21% Similarity=0.267 Sum_probs=41.4
Q ss_pred CcEEEEeeCCCCcCCCcc--CHHHHHHHHHHc---CCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 88 SGLRLVGNKNDDPQKKVV--LTEDAQRFANQM---GIQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 88 ~~~ilvgnK~Dl~~~~~v--~~~~~~~~a~~~---~~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
.|+++|+||+|+.+.... ..++...++... +.+++++||++|.||+++|..+...+.
T Consensus 140 ~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 140 KNIVIVQNKIDLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred CcEEEEEEeeccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 368999999999753221 123444454432 478999999999999999999887653
No 205
>KOG0087|consensus
Probab=97.81 E-value=4.1e-05 Score=57.45 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=29.7
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 34 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~~~ 34 (177)
|+.|+||||.++.||++||..+..+|++.....
T Consensus 150 ~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~k 182 (222)
T KOG0087|consen 150 GLFFLETSALDATNVEKAFERVLTEIYKIVSKK 182 (222)
T ss_pred CceEEEecccccccHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999876543
No 206
>KOG0088|consensus
Probab=97.80 E-value=3.6e-05 Score=55.39 Aligned_cols=30 Identities=37% Similarity=0.613 Sum_probs=27.0
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVLRSK 31 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~ 31 (177)
|..|+|||||+|.+|.++|+.|...++...
T Consensus 149 GA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 149 GALYMETSAKDNVGISELFESLTAKMIEHS 178 (218)
T ss_pred chhheecccccccCHHHHHHHHHHHHHHHh
Confidence 678999999999999999999999887643
No 207
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.78 E-value=3.7e-05 Score=54.90 Aligned_cols=56 Identities=13% Similarity=0.095 Sum_probs=38.9
Q ss_pred CCcEEEEeeCCCCcCCCc--cCHHHHHHHHH--HcCCcEEEecCCCCCCHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKV--VLTEDAQRFAN--QMGIQLFETSAKDNINVEEMFMAITNL 142 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~--v~~~~~~~~a~--~~~~~~~e~Sak~~~~v~~~f~~~~~~ 142 (177)
..|+++|+||+|+..... ..........+ ....+++++||+++.++++++..+.+.
T Consensus 110 ~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 110 GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 478999999999853221 11122222232 234679999999999999999998764
No 208
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.77 E-value=6.3e-05 Score=56.35 Aligned_cols=30 Identities=43% Similarity=0.589 Sum_probs=26.8
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITNLVLRSKK 32 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~ 32 (177)
+.|+|||||+|.||+++|..|++.+++...
T Consensus 143 ~~~~e~Sak~~~~v~e~f~~l~~~l~~~~~ 172 (201)
T cd04107 143 IGWFETSAKEGINIEEAMRFLVKNILANDK 172 (201)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHHhch
Confidence 579999999999999999999999887543
No 209
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.75 E-value=4.1e-05 Score=68.39 Aligned_cols=56 Identities=23% Similarity=0.215 Sum_probs=39.2
Q ss_pred CCCcEEEEeeCCCCcCCC--ccCHH--HHHHHHHHcC--CcEEEecCCCCCCHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKK--VVLTE--DAQRFANQMG--IQLFETSAKDNINVEEMFMAITN 141 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~--~v~~~--~~~~~a~~~~--~~~~e~Sak~~~~v~~~f~~~~~ 141 (177)
.++|+|||+||+|+.... .+..+ +...++..++ ++|+++||++|.||+++|..+..
T Consensus 388 ~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 388 AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 368999999999996421 11111 1111234444 68999999999999999998875
No 210
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.74 E-value=9.2e-05 Score=64.57 Aligned_cols=57 Identities=28% Similarity=0.265 Sum_probs=42.8
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCc---EEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ---LFETSAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~---~~e~Sak~~~~v~~~f~~~~~~~~~ 145 (177)
++|+++|+||+|+.... ......++....++. ++.+||++|.||+++|..+++.+..
T Consensus 126 ~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 126 DLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred CCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 68999999999996432 122234455555654 8999999999999999999887653
No 211
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.72 E-value=9.1e-05 Score=65.74 Aligned_cols=55 Identities=20% Similarity=0.255 Sum_probs=40.1
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHHH-------HHHcC--CcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRF-------ANQMG--IQLFETSAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~-------a~~~~--~~~~e~Sak~~~~v~~~f~~~~~~~ 143 (177)
.++|+|||+||+|+.... .++.... ...++ ++|+++||++|.||+++|..++...
T Consensus 346 ~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 346 ANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred cCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 368999999999997532 2222221 23334 6899999999999999999887653
No 212
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.71 E-value=3.7e-05 Score=59.29 Aligned_cols=31 Identities=23% Similarity=0.315 Sum_probs=26.9
Q ss_pred CCC-cEEEeccCCCC-CHHHHHHHHHHHHHHHH
Q psy1416 1 MGI-QLFETSAKDNI-NVEEMFMAITNLVLRSK 31 (177)
Q Consensus 1 ~~~-~f~EtSAk~~~-nV~~~F~~l~~~i~~~~ 31 (177)
+|+ .|||||||+|. ||+++|..+++.++++.
T Consensus 159 ~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~ 191 (232)
T cd04174 159 LGAEVYLECSAFTSEKSIHSIFRSASLLCLNKL 191 (232)
T ss_pred cCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhc
Confidence 366 59999999998 89999999999987653
No 213
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.70 E-value=7.8e-05 Score=56.52 Aligned_cols=32 Identities=38% Similarity=0.516 Sum_probs=28.3
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKK 32 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~ 32 (177)
++++|+||||++|.||+++|..|++.+++.+.
T Consensus 139 ~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~~ 170 (211)
T cd04111 139 LGMKYIETSARTGDNVEEAFELLTQEIYERIK 170 (211)
T ss_pred hCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 35789999999999999999999999887643
No 214
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.69 E-value=7.1e-05 Score=62.69 Aligned_cols=50 Identities=28% Similarity=0.416 Sum_probs=38.0
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCc-EEEecCCCCCCHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ-LFETSAKDNINVEEMFMAITN 141 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sak~~~~v~~~f~~~~~ 141 (177)
+.|++||+||+|+... .+...++ ...+.. ++++||++|.||+++|..++.
T Consensus 109 ~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 109 NKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred CCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 6799999999997542 1222222 345654 899999999999999999987
No 215
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.68 E-value=7.3e-05 Score=55.69 Aligned_cols=49 Identities=16% Similarity=0.162 Sum_probs=34.5
Q ss_pred CCcEEEEeeCCCCcCCCc-cCHHHHHHHHHH-------cCCcEEEecCCCCCCHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKV-VLTEDAQRFANQ-------MGIQLFETSAKDNINVEEM 135 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~-v~~~~~~~~a~~-------~~~~~~e~Sak~~~~v~~~ 135 (177)
++|++||+||+|+...+. ...++...+... .+++++++||++|.|+.+.
T Consensus 117 ~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 117 GLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 689999999999965432 123444444422 3678999999999888543
No 216
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.66 E-value=3.7e-05 Score=56.59 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=33.7
Q ss_pred CCcEEEEeeCCCCcCCC--ccCHHHHHHHHHHcC--CcEEEecCCCCCCHH
Q psy1416 87 PSGLRLVGNKNDDPQKK--VVLTEDAQRFANQMG--IQLFETSAKDNINVE 133 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~--~v~~~~~~~~a~~~~--~~~~e~Sak~~~~v~ 133 (177)
+.|+++|+||+|+.... ....++.+.+....+ ..+|++||++|+||+
T Consensus 129 ~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 129 GIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 68999999999996432 222344555555543 479999999999974
No 217
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.66 E-value=8e-05 Score=65.09 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=40.3
Q ss_pred Cc-EEEEeeCCCCcCCCccC--HHHHHHHHHHcC---CcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416 88 SG-LRLVGNKNDDPQKKVVL--TEDAQRFANQMG---IQLFETSAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 88 ~~-~ilvgnK~Dl~~~~~v~--~~~~~~~a~~~~---~~~~e~Sak~~~~v~~~f~~~~~~~ 143 (177)
+| ++||.||+|+.++..+. .++...+....+ .+++.+||++|.||++++..+....
T Consensus 104 i~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 104 NPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLP 165 (614)
T ss_pred CCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence 44 68999999997532221 234445555444 6799999999999999998887644
No 218
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.65 E-value=2.5e-05 Score=53.24 Aligned_cols=39 Identities=21% Similarity=0.024 Sum_probs=27.0
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCC
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKND 98 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~D 98 (177)
++|+++..||..+. |+..+........++|++|||||.|
T Consensus 80 v~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 80 VYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 48999999999973 3333332333345699999999998
No 219
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.64 E-value=5.2e-05 Score=63.47 Aligned_cols=77 Identities=16% Similarity=0.021 Sum_probs=47.7
Q ss_pred ccccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCc----cCHHHHHHHHHHcC-----CcEEEecCCCCC
Q psy1416 60 VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKV----VLTEDAQRFANQMG-----IQLFETSAKDNI 130 (177)
Q Consensus 60 ~~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~----v~~~~~~~~a~~~~-----~~~~e~Sak~~~ 130 (177)
+.|.++.+++....|...+..... ....|++||+||+|+.+... ...++...+++..+ ++|+++||++|.
T Consensus 115 VvDa~~~~~~~~~~t~~~~~~~~~-~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ 193 (426)
T TIGR00483 115 VVAVGDGEFEVQPQTREHAFLART-LGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGD 193 (426)
T ss_pred EEECCCCCcccCCchHHHHHHHHH-cCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccc
Confidence 367777765533333221110111 12357999999999964211 12356666777665 579999999999
Q ss_pred CHHHHHH
Q psy1416 131 NVEEMFM 137 (177)
Q Consensus 131 ~v~~~f~ 137 (177)
||++++.
T Consensus 194 ni~~~~~ 200 (426)
T TIGR00483 194 NVIKKSE 200 (426)
T ss_pred ccccccc
Confidence 9998664
No 220
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.62 E-value=0.00014 Score=65.15 Aligned_cols=56 Identities=14% Similarity=0.120 Sum_probs=47.4
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~ 143 (177)
+.|+++|.||+|+.+++.+. .+...+++.+|++++.+||++|.||+++...+.+..
T Consensus 112 giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 112 GIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred CCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 68999999999997655553 466788899999999999999999999988877643
No 221
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=97.58 E-value=8.6e-05 Score=55.96 Aligned_cols=29 Identities=28% Similarity=0.492 Sum_probs=26.6
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVLRS 30 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~ 30 (177)
++.|+|||||+|.||+++|..|++.+++.
T Consensus 128 ~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 128 NLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 67899999999999999999999988654
No 222
>PLN03118 Rab family protein; Provisional
Probab=97.57 E-value=0.00019 Score=54.18 Aligned_cols=29 Identities=31% Similarity=0.422 Sum_probs=26.7
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVLRS 30 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~ 30 (177)
+++|+|+||++|.||+++|..|++.++..
T Consensus 151 ~~~~~e~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 151 GCLFLECSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 57899999999999999999999998764
No 223
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=97.56 E-value=0.00012 Score=61.05 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=41.3
Q ss_pred CcEEEEeeCCCCcCCCc--cCHHHHHHHHHHc---CCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 88 SGLRLVGNKNDDPQKKV--VLTEDAQRFANQM---GIQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 88 ~~~ilvgnK~Dl~~~~~--v~~~~~~~~a~~~---~~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
.|+++|+||+|+.+... ...++...+.... +++++++||++|.|+++++..|...+.
T Consensus 135 ~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 135 KNIVIVQNKIDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred CeEEEEEEccccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 36899999999975322 1233444444443 568999999999999999999887553
No 224
>PLN03108 Rab family protein; Provisional
Probab=97.55 E-value=0.00019 Score=54.36 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=28.6
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKK 32 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~ 32 (177)
++++|+|+||++|.||+++|..+++.++++..
T Consensus 141 ~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~~~ 172 (210)
T PLN03108 141 HGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQ 172 (210)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 36789999999999999999999999987654
No 225
>PTZ00099 rab6; Provisional
Probab=97.55 E-value=6e-05 Score=55.60 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=26.0
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVLRS 30 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~ 30 (177)
++.|+|||||+|.||+++|..|++.+...
T Consensus 116 ~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 116 NTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 56799999999999999999999988653
No 226
>KOG0395|consensus
Probab=97.54 E-value=8.9e-05 Score=55.75 Aligned_cols=30 Identities=37% Similarity=0.463 Sum_probs=27.0
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNLVLRS 30 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~ 30 (177)
|+++|+|||||.+.||+++|..|.+.+...
T Consensus 138 ~~~~f~E~Sak~~~~v~~~F~~L~r~~~~~ 167 (196)
T KOG0395|consen 138 WGCAFIETSAKLNYNVDEVFYELVREIRLP 167 (196)
T ss_pred cCCcEEEeeccCCcCHHHHHHHHHHHHHhh
Confidence 578999999999999999999999987544
No 227
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.54 E-value=0.00037 Score=49.66 Aligned_cols=52 Identities=25% Similarity=0.265 Sum_probs=43.1
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCc-EEEecCCCCCCHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ-LFETSAKDNINVEEMFMAI 139 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sak~~~~v~~~f~~~ 139 (177)
+.|+|-|.+|+|+... ....+.++++.+..|+. .|++|+.+|+||+++...|
T Consensus 89 ~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 89 NKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred CCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHH
Confidence 4689999999999832 23567888888888874 7999999999999998876
No 228
>PLN03110 Rab GTPase; Provisional
Probab=97.52 E-value=0.00022 Score=54.17 Aligned_cols=31 Identities=32% Similarity=0.395 Sum_probs=27.9
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSK 31 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~ 31 (177)
++++|+||||++|.||+++|..|+..|.+..
T Consensus 147 ~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~~ 177 (216)
T PLN03110 147 EGLSFLETSALEATNVEKAFQTILLEIYHII 177 (216)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 3688999999999999999999999998754
No 229
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.52 E-value=0.00023 Score=51.26 Aligned_cols=57 Identities=25% Similarity=0.134 Sum_probs=39.3
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
+.|+++|.||+||..+..+ .+-...+....+...+.+||++|.++++++..+.....
T Consensus 29 ~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i~~~~~ 85 (155)
T cd01849 29 GKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKKESAFTKQTN 85 (155)
T ss_pred CCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhHHHHHHHHhH
Confidence 6899999999999543211 01111232334556889999999999999988876644
No 230
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.51 E-value=0.00022 Score=59.53 Aligned_cols=54 Identities=24% Similarity=0.306 Sum_probs=41.7
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~f~~~~~~~~~ 145 (177)
+.|++||+||+|+...... ..+ ...++. .++++||++|.||+++|..+.+.+..
T Consensus 107 ~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 107 GKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred CCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCc
Confidence 6789999999998754321 122 345666 69999999999999999999877644
No 231
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.50 E-value=0.00018 Score=53.37 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=38.7
Q ss_pred CCcEEEEeeCCCCcCCCcc-CHHHHH-HHHHHcC------CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVV-LTEDAQ-RFANQMG------IQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v-~~~~~~-~~a~~~~------~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
++|+++|.||+|+...+.. ..++.. .+.+..+ .+++.+||++|.||++++..+.+.+.
T Consensus 122 ~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 122 GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 6889999999999732110 011222 3333332 46999999999999999998887653
No 232
>KOG0073|consensus
Probab=97.47 E-value=0.00051 Score=49.74 Aligned_cols=84 Identities=19% Similarity=0.141 Sum_probs=59.1
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHH------HHHHHHHHcCCcEEEecCCCCCCH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTE------DAQRFANQMGIQLFETSAKDNINV 132 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~------~~~~~a~~~~~~~~e~Sak~~~~v 132 (177)
+-|..|+..|+.+. -+..+.. ....-..|++|++||.|+.. .++.+ +...+++....+.+-|||.+|+++
T Consensus 90 vvDssD~~r~~e~~~~L~~lL~-eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l 166 (185)
T KOG0073|consen 90 VVDSSDRMRMQECKQELTELLV-EERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL 166 (185)
T ss_pred EEECchHHHHHHHHHHHHHHHh-hhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence 46667777777764 3433311 11112579999999999973 22322 334556778899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1416 133 EEMFMAITNLVLRS 146 (177)
Q Consensus 133 ~~~f~~~~~~~~~~ 146 (177)
.+.|..++..+..+
T Consensus 167 ~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 167 LEGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988774
No 233
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.44 E-value=0.00024 Score=53.14 Aligned_cols=31 Identities=81% Similarity=1.087 Sum_probs=27.8
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVLRSKK 32 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~ 32 (177)
++.||||||++|.||+++|..|++.+++...
T Consensus 141 ~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~~ 171 (199)
T cd04110 141 GISLFETSAKENINVEEMFNCITELVLRAKK 171 (199)
T ss_pred CCEEEEEECCCCcCHHHHHHHHHHHHHHhhh
Confidence 5789999999999999999999999987543
No 234
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.44 E-value=0.00015 Score=55.30 Aligned_cols=29 Identities=31% Similarity=0.472 Sum_probs=26.4
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVLRS 30 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~ 30 (177)
++.|||||||+|.||+++|..|++.++..
T Consensus 146 ~~~~~e~SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 146 NLQYYEISAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 57899999999999999999999988654
No 235
>KOG0095|consensus
Probab=97.39 E-value=5.3e-05 Score=54.03 Aligned_cols=31 Identities=29% Similarity=0.517 Sum_probs=27.3
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVLRSKK 32 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~ 32 (177)
.+.|+|||||+..||+..|+.||-++...+.
T Consensus 143 dmyfletsakea~nve~lf~~~a~rli~~ar 173 (213)
T KOG0095|consen 143 DMYFLETSAKEADNVEKLFLDLACRLISEAR 173 (213)
T ss_pred hhhhhhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 3679999999999999999999999887654
No 236
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.39 E-value=0.00037 Score=62.05 Aligned_cols=56 Identities=18% Similarity=0.168 Sum_probs=39.8
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~ 145 (177)
.+.|++||+||+|+.... ......+....+ ..|++||++|.||+++|..++..+..
T Consensus 382 ~~~pvIlV~NK~D~~~~~---~~~~~~~~lg~~-~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 382 AGKPVVLAVNKIDDQASE---YDAAEFWKLGLG-EPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred cCCCEEEEEECcccccch---hhHHHHHHcCCC-CeEEEECCCCCCchHHHHHHHHhccc
Confidence 368999999999986431 111222222222 36789999999999999999988754
No 237
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.24 E-value=0.00087 Score=49.03 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=38.7
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
+.|+++|.||+||.....+ ....++.+..+..++.+||+++.|++++...+...+.
T Consensus 46 ~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 46 NKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred CCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 4689999999999643211 1111222333456899999999999999888877653
No 238
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.19 E-value=0.00064 Score=48.94 Aligned_cols=51 Identities=16% Similarity=0.136 Sum_probs=35.1
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHc----CCcEEEecCCCCCCHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQM----GIQLFETSAKDNINVEEMFMAITNL 142 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~----~~~~~e~Sak~~~~v~~~f~~~~~~ 142 (177)
+.|+++|.||+||..+. +...+...+ ....+.+||+.+.|++++...+...
T Consensus 39 ~~p~ilVlNKiDl~~~~-----~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 39 HKHLIFVLNKCDLVPTW-----VTARWVKILSKEYPTIAFHASINNPFGKGSLIQLLRQF 93 (157)
T ss_pred CCCEEEEEEchhcCCHH-----HHHHHHHHHhcCCcEEEEEeeccccccHHHHHHHHHHH
Confidence 57999999999996432 222333332 2224679999999999888777553
No 239
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.18 E-value=0.00061 Score=48.23 Aligned_cols=43 Identities=19% Similarity=0.050 Sum_probs=31.5
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCC
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNIN 131 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~ 131 (177)
+.|+++|.||+||..+.. ..+...+.+..+..++.+||+++.+
T Consensus 42 ~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~~~~~ 84 (141)
T cd01857 42 RKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSALKENA 84 (141)
T ss_pred CCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEecCCCc
Confidence 579999999999964332 2233455556678899999999875
No 240
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.18 E-value=0.00083 Score=50.11 Aligned_cols=52 Identities=23% Similarity=0.075 Sum_probs=40.3
Q ss_pred EEEeeCCCCcCCCccCHHHHHHHHHHc--CCcEEEecCCCCCCHHHHHHHHHHH
Q psy1416 91 RLVGNKNDDPQKKVVLTEDAQRFANQM--GIQLFETSAKDNINVEEMFMAITNL 142 (177)
Q Consensus 91 ilvgnK~Dl~~~~~v~~~~~~~~a~~~--~~~~~e~Sak~~~~v~~~f~~~~~~ 142 (177)
+||.||.||...-..+.+....-+++. +.+|+++|+++|.|+++++..+...
T Consensus 146 llVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 146 LLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred EEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 799999999865444556666666665 4789999999999999997776543
No 241
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.11 E-value=0.00024 Score=61.79 Aligned_cols=63 Identities=13% Similarity=0.171 Sum_probs=43.7
Q ss_pred cccch---hhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416 61 CTVLN---ECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137 (177)
Q Consensus 61 ~dit~---~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~ 137 (177)
.|+++ +.+|..+.|+.. .++|++||+||+|+.. .|+...+++|+|+||+++.+|..-|.
T Consensus 100 vD~~~g~~~qt~e~i~~l~~--------~~vpiIVv~NK~Dl~~----------~~~~~~~~~f~e~sak~~~~v~~~~~ 161 (590)
T TIGR00491 100 VDINEGFKPQTQEALNILRM--------YKTPFVVAANKIDRIP----------GWRSHEGRPFMESFSKQEIQVQQNLD 161 (590)
T ss_pred EECCcCCCHhHHHHHHHHHH--------cCCCEEEEEECCCccc----------hhhhccCchHHHHHHhhhHHHHHHHH
Confidence 45554 566666554321 2679999999999853 35677889999999999987765444
Q ss_pred HHHH
Q psy1416 138 AITN 141 (177)
Q Consensus 138 ~~~~ 141 (177)
....
T Consensus 162 ~~~~ 165 (590)
T TIGR00491 162 TKVY 165 (590)
T ss_pred HHHH
Confidence 3333
No 242
>KOG3905|consensus
Probab=97.08 E-value=0.0016 Score=52.34 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=48.3
Q ss_pred CCcEEEEeeCCCC----cCCCccC-------HHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDD----PQKKVVL-------TEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 87 ~~~~ilvgnK~Dl----~~~~~v~-------~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~ 146 (177)
.+|+++|.+|+|+ +.+.... ....+.||-++|+..|.||+|...|++-++.+|+.+++..
T Consensus 222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG~ 292 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYGF 292 (473)
T ss_pred CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcCc
Confidence 7899999999998 2221111 2356778899999999999999999999999999988654
No 243
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.03 E-value=0.002 Score=59.31 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=20.2
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHH
Q psy1416 119 IQLFETSAKDNINVEEMFMAITNL 142 (177)
Q Consensus 119 ~~~~e~Sak~~~~v~~~f~~~~~~ 142 (177)
.+++.+||++|+||+++...+...
T Consensus 648 v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 648 VAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHh
Confidence 578999999999999998766543
No 244
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.01 E-value=0.00086 Score=50.83 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=26.7
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNLVLRS 30 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~ 30 (177)
++++|+|+|||+|.||+++|..|++.+...
T Consensus 139 ~~~~~~~iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 139 NGMESCLVSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 367899999999999999999999988753
No 245
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=96.96 E-value=0.00091 Score=51.26 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=25.1
Q ss_pred CC-cEEEeccCCCCC-HHHHHHHHHHHHHHH
Q psy1416 2 GI-QLFETSAKDNIN-VEEMFMAITNLVLRS 30 (177)
Q Consensus 2 ~~-~f~EtSAk~~~n-V~~~F~~l~~~i~~~ 30 (177)
|+ +|||||||++.| |+++|..+++..+.+
T Consensus 148 ~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 148 GAVSYVECSSRSSERSVRDVFHVATVASLGR 178 (222)
T ss_pred CCCEEEEcCCCcCCcCHHHHHHHHHHHHHhc
Confidence 54 799999999996 999999999977654
No 246
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.0028 Score=53.71 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=39.7
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHHHHHH-------cC--CcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ-------MG--IQLFETSAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~-------~~--~~~~e~Sak~~~~v~~~f~~~~~~~ 143 (177)
.++|+++..||+|..+. .+.....-..+ |+ ..|+.+||++|+||++|+..++-..
T Consensus 106 a~vP~iVAiNKiDk~~~---np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 106 AGVPIVVAINKIDKPEA---NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred CCCCEEEEEecccCCCC---CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence 37999999999998743 23333332233 33 4699999999999999998877543
No 247
>KOG1489|consensus
Probab=96.95 E-value=0.0018 Score=51.82 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=38.2
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCc-EEEecCCCCCCHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ-LFETSAKDNINVEEMFMAIT 140 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sak~~~~v~~~f~~~~ 140 (177)
.+-|.++|+||+|+.+.. ..-..++++...-+ .+.+||+++++++++...|-
T Consensus 311 ~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr 363 (366)
T KOG1489|consen 311 ADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLR 363 (366)
T ss_pred ccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHh
Confidence 467899999999995211 12235677776555 89999999999998876553
No 248
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.88 E-value=0.0025 Score=50.67 Aligned_cols=54 Identities=15% Similarity=0.067 Sum_probs=38.5
Q ss_pred CcEEEEeeCCCCcCCCccCHHHHHHHHHHc--CCcEEEecCCCCCCHHHHHHHHHH
Q psy1416 88 SGLRLVGNKNDDPQKKVVLTEDAQRFANQM--GIQLFETSAKDNINVEEMFMAITN 141 (177)
Q Consensus 88 ~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~--~~~~~e~Sak~~~~v~~~f~~~~~ 141 (177)
..-++|.||+||........+......+.. .++.+.+||++|+|++++...+..
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999643222233444444443 478999999999999999988865
No 249
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=96.86 E-value=0.003 Score=48.42 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=35.0
Q ss_pred CCcEEEEeeCCCCcCCCccC--HHHHHHHHHH--------------------------cCCcEEEecCCCCCCHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVL--TEDAQRFANQ--------------------------MGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~--~~~~~~~a~~--------------------------~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|+++|.||+|+.++..+. .++...+... ...++|.+||.+|.|++++...
T Consensus 138 ~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~ 217 (224)
T cd04165 138 NIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAF 217 (224)
T ss_pred CCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHH
Confidence 57899999999985432111 1122222210 1248999999999999988766
Q ss_pred HH
Q psy1416 139 IT 140 (177)
Q Consensus 139 ~~ 140 (177)
|.
T Consensus 218 L~ 219 (224)
T cd04165 218 LN 219 (224)
T ss_pred HH
Confidence 53
No 250
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=96.84 E-value=0.00088 Score=56.09 Aligned_cols=50 Identities=22% Similarity=0.194 Sum_probs=35.8
Q ss_pred CcEEEEeeCCCCcCCCc----cCHHHHHHHHHHcC-----CcEEEecCCCCCCHHHHHH
Q psy1416 88 SGLRLVGNKNDDPQKKV----VLTEDAQRFANQMG-----IQLFETSAKDNINVEEMFM 137 (177)
Q Consensus 88 ~~~ilvgnK~Dl~~~~~----v~~~~~~~~a~~~~-----~~~~e~Sak~~~~v~~~f~ 137 (177)
.|++||+||+|+..... ...++...+....+ .+++.+||++|.||++++.
T Consensus 140 ~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 140 NQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred CeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 46999999999964211 12345555665555 4699999999999998664
No 251
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=96.83 E-value=0.0034 Score=52.85 Aligned_cols=57 Identities=26% Similarity=0.283 Sum_probs=43.0
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHH-HHHHHcCC---cEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQ-RFANQMGI---QLFETSAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~-~~a~~~~~---~~~e~Sak~~~~v~~~f~~~~~~~~~ 145 (177)
.+.-||-|.||+||+... .+..+ +...-.|+ .-+.+|||+|.||++++..++..+..
T Consensus 127 ~~LeIiPViNKIDLP~Ad---pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 127 NNLEIIPVLNKIDLPAAD---PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred cCcEEEEeeecccCCCCC---HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence 477899999999997542 33333 34444564 47899999999999999999887754
No 252
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.82 E-value=0.0039 Score=49.25 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=39.7
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~ 146 (177)
+.|+++|.||+||.+...+ ..-.++.+..+..++.+||+++.+++++...+.+.+.+.
T Consensus 48 ~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 48 NKPRLIVLNKADLADPAVT--KQWLKYFEEKGIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred CCCEEEEEEccccCCHHHH--HHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 4689999999999542111 111112233456789999999999999988887766543
No 253
>PRK09866 hypothetical protein; Provisional
Probab=96.77 E-value=0.0055 Score=53.65 Aligned_cols=54 Identities=15% Similarity=0.103 Sum_probs=39.3
Q ss_pred CcEEEEeeCCCCcCCCccCHHHHHHHHHHc----C---CcEEEecCCCCCCHHHHHHHHHH
Q psy1416 88 SGLRLVGNKNDDPQKKVVLTEDAQRFANQM----G---IQLFETSAKDNINVEEMFMAITN 141 (177)
Q Consensus 88 ~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~----~---~~~~e~Sak~~~~v~~~f~~~~~ 141 (177)
.|+++|.||+|+.++..-..+....+.... + ...|.+||+.|.|++++...+..
T Consensus 290 ~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 290 VPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 699999999998643322244555553322 2 35899999999999999998887
No 254
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=96.75 E-value=0.0035 Score=50.63 Aligned_cols=61 Identities=25% Similarity=0.258 Sum_probs=41.7
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCc--EEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ--LFETSAKDNINVEEMFMAITNLVLRSK 147 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~--~~e~Sak~~~~v~~~f~~~~~~~~~~~ 147 (177)
.+-|.+||.||+|+...+.-.......+++..+.. ++ +||.++.+++++...+.+.+.+..
T Consensus 274 ~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~-ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 274 AEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYL-ISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred ccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCccee-eehhcccCHHHHHHHHHHHHHHhh
Confidence 45689999999996543322222333344444433 33 999999999999999888877664
No 255
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=96.75 E-value=0.0019 Score=49.31 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=25.6
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVLR 29 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~ 29 (177)
+++|+||||++|.||+++|..|++.+..
T Consensus 137 ~~~~~e~SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 137 DCKFIETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999998864
No 256
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=96.70 E-value=0.0019 Score=48.74 Aligned_cols=48 Identities=27% Similarity=0.225 Sum_probs=32.6
Q ss_pred CcEEEEeeCCCCcCCCcc----CHHHHHHHHHHcCC---cEEEecCCCCCCHHHH
Q psy1416 88 SGLRLVGNKNDDPQKKVV----LTEDAQRFANQMGI---QLFETSAKDNINVEEM 135 (177)
Q Consensus 88 ~~~ilvgnK~Dl~~~~~v----~~~~~~~~a~~~~~---~~~e~Sak~~~~v~~~ 135 (177)
.++|+|.||+|+.....- ...+...+...++. +++.+||++|.||++.
T Consensus 131 ~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 131 RHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred CcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 357889999999642210 12344555566664 4899999999999753
No 257
>COG2262 HflX GTPases [General function prediction only]
Probab=96.67 E-value=0.0053 Score=50.65 Aligned_cols=56 Identities=18% Similarity=-0.050 Sum_probs=40.0
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~ 146 (177)
.++|+|+|-||+|+..... ....+....-..+.+||++|.|++.+...|...+...
T Consensus 303 ~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 303 DEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred CCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 3589999999999754322 1112222211589999999999999999988887644
No 258
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=96.66 E-value=0.003 Score=55.15 Aligned_cols=58 Identities=21% Similarity=0.217 Sum_probs=40.9
Q ss_pred CCcEEEEeeCCCCcCCCcc-CHHHHHHHHH-------HcCCcEEEecCCCCC----------CHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVV-LTEDAQRFAN-------QMGIQLFETSAKDNI----------NVEEMFMAITNLVL 144 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v-~~~~~~~~a~-------~~~~~~~e~Sak~~~----------~v~~~f~~~~~~~~ 144 (177)
++|+++|+||+|+.+.+.. ..++...+.. +..++++.+||++|. +++.+|..++..+.
T Consensus 116 ~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 116 GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 6889999999999754321 1233333332 235689999999996 79999988887664
No 259
>PRK01889 GTPase RsgA; Reviewed
Probab=96.66 E-value=0.0031 Score=51.74 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=36.2
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHH-HcCCcEEEecCCCCCCHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFAN-QMGIQLFETSAKDNINVEEMFMAIT 140 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~-~~~~~~~e~Sak~~~~v~~~f~~~~ 140 (177)
+++.+||.||+||.+.. .+....+.. ..+++.+.+||+++.+++++...+.
T Consensus 142 ~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 142 GAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred CCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCccHHHHHHHhh
Confidence 67789999999997531 111222222 3467889999999999998877764
No 260
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=96.62 E-value=0.0075 Score=42.00 Aligned_cols=51 Identities=29% Similarity=0.301 Sum_probs=42.1
Q ss_pred cEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHHHHHH
Q psy1416 89 GLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEMFMAITN 141 (177)
Q Consensus 89 ~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~f~~~~~ 141 (177)
|+|-|.+|.||.... ..+..+.|..+.|. +.|++|+.+..+|++++..+..
T Consensus 92 ~vIgvVTK~DLaed~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 92 KVIGVVTKADLAEDA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred ceEEEEecccccchH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 588899999998543 34667788888886 4999999999999999988864
No 261
>PRK04004 translation initiation factor IF-2; Validated
Probab=96.59 E-value=0.0014 Score=57.10 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=41.8
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~ 146 (177)
++|+++|+||+|+.. .|+...+..|+++|++++.++.+.|......+...
T Consensus 123 ~vpiIvviNK~D~~~----------~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~ 172 (586)
T PRK04004 123 KTPFVVAANKIDRIP----------GWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQ 172 (586)
T ss_pred CCCEEEEEECcCCch----------hhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 689999999999851 35556688999999999999999999988777654
No 262
>KOG0462|consensus
Probab=96.58 E-value=0.0038 Score=53.27 Aligned_cols=56 Identities=29% Similarity=0.220 Sum_probs=41.8
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHHHH----HHcCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFA----NQMGIQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a----~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
.+..+|.|.||+||...+ .+...... .....+.+.+|||+|.||++++..+++.+.
T Consensus 176 ~~L~iIpVlNKIDlp~ad---pe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 176 AGLAIIPVLNKIDLPSAD---PERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred cCCeEEEeeeccCCCCCC---HHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCC
Confidence 367899999999998654 23333222 223457899999999999999998888775
No 263
>KOG0070|consensus
Probab=96.58 E-value=0.0031 Score=46.46 Aligned_cols=59 Identities=17% Similarity=0.101 Sum_probs=42.9
Q ss_pred CCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHc-----CCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416 85 LFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQM-----GIQLFETSAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 85 ~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~-----~~~~~e~Sak~~~~v~~~f~~~~~~~~~ 145 (177)
..++|+++.+||-|+.+. .+..+......-. ...+..|+|.+|+|+.+.+..+...+..
T Consensus 116 l~~~~llv~aNKqD~~~a--ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 116 LRNAPLLVFANKQDLPGA--LSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred cCCceEEEEechhhcccc--CCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence 358999999999999753 3444443333222 2346789999999999999999887753
No 264
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=96.58 E-value=0.0038 Score=52.85 Aligned_cols=55 Identities=16% Similarity=0.191 Sum_probs=37.8
Q ss_pred cEEEEeeCCCCcCCCcc--CHHHHHHHHHH---cCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416 89 GLRLVGNKNDDPQKKVV--LTEDAQRFANQ---MGIQLFETSAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 89 ~~ilvgnK~Dl~~~~~v--~~~~~~~~a~~---~~~~~~e~Sak~~~~v~~~f~~~~~~~ 143 (177)
++|||.||+|+.+...+ ..++...+... .+.+++.+||++|.||+.+...|...+
T Consensus 173 ~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 173 HIIILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred cEEEEEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 58999999999742211 12233333322 257899999999999998888877544
No 265
>PRK13768 GTPase; Provisional
Probab=96.53 E-value=0.0061 Score=47.58 Aligned_cols=55 Identities=22% Similarity=0.240 Sum_probs=39.0
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHH----------------------------HHHHcC--CcEEEecCCCCCCHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQR----------------------------FANQMG--IQLFETSAKDNINVEEMF 136 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~----------------------------~a~~~~--~~~~e~Sak~~~~v~~~f 136 (177)
+.|+++|.||+|+...... ++... ..+..+ .+++++||+++.+++++.
T Consensus 162 ~~~~i~v~nK~D~~~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~ 239 (253)
T PRK13768 162 GLPQIPVLNKADLLSEEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELY 239 (253)
T ss_pred CCCEEEEEEhHhhcCchhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHH
Confidence 6899999999998654321 11111 112233 578999999999999999
Q ss_pred HHHHHHH
Q psy1416 137 MAITNLV 143 (177)
Q Consensus 137 ~~~~~~~ 143 (177)
..+.+.+
T Consensus 240 ~~I~~~l 246 (253)
T PRK13768 240 AAIQEVF 246 (253)
T ss_pred HHHHHHc
Confidence 8887665
No 266
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.49 E-value=0.0086 Score=47.60 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=40.0
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~ 146 (177)
+.|+++|.||+||.+... .+....+.++.+..++.+||+++.+++++...+...+.+.
T Consensus 51 ~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 51 NKPRLLILNKSDLADPEV--TKKWIEYFEEQGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred CCCEEEEEEchhcCCHHH--HHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 468999999999953211 1111222234466789999999999999888877766543
No 267
>KOG0076|consensus
Probab=96.48 E-value=0.0018 Score=47.42 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=44.2
Q ss_pred CCCcEEEEeeCCCCcCCCccC-HHHHHHHHHHc---CCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVL-TEDAQRFANQM---GIQLFETSAKDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~-~~~~~~~a~~~---~~~~~e~Sak~~~~v~~~f~~~~~~~~~~ 146 (177)
.++|+++.+||-|+.+.-.+. .......++.. ..+|..+||.+|+||++....+++.+.+.
T Consensus 125 eg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 125 EGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred cCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 579999999999998643221 11222223333 36799999999999999999999887654
No 268
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=96.48 E-value=0.0018 Score=49.26 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=30.0
Q ss_pred CcEEEEeeCCCCcCC--CccC----HHHHHHHHHHcC-----CcEEEecCCCCCCHH
Q psy1416 88 SGLRLVGNKNDDPQK--KVVL----TEDAQRFANQMG-----IQLFETSAKDNINVE 133 (177)
Q Consensus 88 ~~~ilvgnK~Dl~~~--~~v~----~~~~~~~a~~~~-----~~~~e~Sak~~~~v~ 133 (177)
.|+++|.||+|+... ..-. .++...+....+ .+++.+||++|.||+
T Consensus 138 ~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 138 KQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred CeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 578999999999731 1001 112222334443 569999999999987
No 269
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.48 E-value=0.0029 Score=50.64 Aligned_cols=57 Identities=21% Similarity=0.158 Sum_probs=38.0
Q ss_pred CCcEEEEeeCCCCcCCCccCHHH-----H-HHHHH---HcCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTED-----A-QRFAN---QMGIQLFETSAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~-----~-~~~a~---~~~~~~~e~Sak~~~~v~~~f~~~~~~~ 143 (177)
..|.++|.||+|+.......... . ..+.. .+..+++.+||+++.||++++..+.+..
T Consensus 172 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 172 EIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred hhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 56789999999997432111000 0 11111 1334699999999999999999998763
No 270
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=96.45 E-value=0.0037 Score=47.21 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=25.6
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVLR 29 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~ 29 (177)
++.|+||||++|.||+++|..||+.++.
T Consensus 142 ~~~~~e~Sa~~~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 142 NLQYYDISAKSNYNFEKPFLWLARRLTN 169 (215)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 5779999999999999999999998864
No 271
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.38 E-value=0.0096 Score=47.47 Aligned_cols=58 Identities=19% Similarity=0.106 Sum_probs=44.3
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~ 143 (177)
.++..+||.||+||.+......++.......+|++.+.+||+++.+++++...+...+
T Consensus 109 ~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~l~~~~ 166 (301)
T COG1162 109 GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEELAELLAGKI 166 (301)
T ss_pred cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHHHHHhcCCe
Confidence 3677788899999986543222345556677899999999999999999988877553
No 272
>KOG4423|consensus
Probab=96.33 E-value=0.0047 Score=45.82 Aligned_cols=28 Identities=32% Similarity=0.329 Sum_probs=25.9
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy1416 4 QLFETSAKDNINVEEMFMAITNLVLRSK 31 (177)
Q Consensus 4 ~f~EtSAk~~~nV~~~F~~l~~~i~~~~ 31 (177)
.|+|||||++.||+|+-+.|+++|+.+.
T Consensus 170 gwtets~Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 170 GWTETSAKENKNIPEAQRELVEKILVND 197 (229)
T ss_pred ceeeeccccccChhHHHHHHHHHHHhhc
Confidence 5999999999999999999999998764
No 273
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=96.30 E-value=0.0055 Score=45.69 Aligned_cols=27 Identities=41% Similarity=0.404 Sum_probs=24.7
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVL 28 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~ 28 (177)
+++|+++||++|.||+++|..|++.+.
T Consensus 137 ~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 137 NCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred CCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 467999999999999999999999775
No 274
>COG1159 Era GTPase [General function prediction only]
Probab=96.24 E-value=0.0085 Score=47.53 Aligned_cols=59 Identities=22% Similarity=0.190 Sum_probs=40.4
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC-CcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~~f~~~~~~~~~ 145 (177)
+.|++|+.||+|......+-......+..... ...+.+||+.|.|++.+...+...+.+
T Consensus 114 ~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 114 KTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred CCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 57999999999987544311222222222222 368999999999999998888776643
No 275
>PRK12736 elongation factor Tu; Reviewed
Probab=96.20 E-value=0.0095 Score=49.50 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=29.4
Q ss_pred CCc-EEEEeeCCCCcCCCccC---HHHHHHHHHHcC-----CcEEEecCCCCC
Q psy1416 87 PSG-LRLVGNKNDDPQKKVVL---TEDAQRFANQMG-----IQLFETSAKDNI 130 (177)
Q Consensus 87 ~~~-~ilvgnK~Dl~~~~~v~---~~~~~~~a~~~~-----~~~~e~Sak~~~ 130 (177)
++| +|+|.||+|+.+...+. .++...+....+ ++++.+||++|.
T Consensus 127 g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 127 GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKAL 179 (394)
T ss_pred CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccc
Confidence 566 68899999996432211 234455555554 579999999984
No 276
>KOG0072|consensus
Probab=96.19 E-value=0.004 Score=44.38 Aligned_cols=58 Identities=14% Similarity=0.072 Sum_probs=41.4
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHH-----HHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQR-----FANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~-----~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~ 145 (177)
....++|++||.|.... .+..|+.. ..+..-...+++||.+|+|+++++..+.+.+..
T Consensus 118 q~a~llv~anKqD~~~~--~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 118 QHAKLLVFANKQDYSGA--LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred cCceEEEEeccccchhh--hhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhc
Confidence 35789999999998642 22233222 122223679999999999999999999987754
No 277
>COG1160 Predicted GTPases [General function prediction only]
Probab=96.16 E-value=0.017 Score=48.25 Aligned_cols=58 Identities=19% Similarity=0.163 Sum_probs=43.7
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHc-----CCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQM-----GIQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~-----~~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
.-++++|.||-|+..+...+.++.+...+.. .++.+.+||++|.++..+|..+.....
T Consensus 289 g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 289 GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence 4689999999998765445555555444432 367899999999999999998876544
No 278
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=96.05 E-value=0.014 Score=48.96 Aligned_cols=56 Identities=21% Similarity=0.095 Sum_probs=40.2
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~ 146 (177)
.+.|+++|.||+||........ .....+.+++.+||++|.|++.+-..+...+...
T Consensus 323 ~~~~~i~v~NK~DL~~~~~~~~-----~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 323 KKKPIIVVLNKADLVSKIELES-----EKLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred cCCCEEEEEechhcccccccch-----hhccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 4578999999999986533111 1112344689999999999999888777666544
No 279
>KOG0075|consensus
Probab=96.02 E-value=0.0052 Score=43.93 Aligned_cols=52 Identities=23% Similarity=0.310 Sum_probs=39.0
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC--------CcEEEecCCCCCCHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG--------IQLFETSAKDNINVEEMFMAITNL 142 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~--------~~~~e~Sak~~~~v~~~f~~~~~~ 142 (177)
..+|+++.|||.|+.+. .+.. .+..+.| +-.|.+|+|...||+.+...+.+.
T Consensus 121 ~gip~LVLGnK~d~~~A--L~~~---~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~h 180 (186)
T KOG0075|consen 121 TGIPLLVLGNKIDLPGA--LSKI---ALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEH 180 (186)
T ss_pred cCCcEEEecccccCccc--ccHH---HHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHH
Confidence 57999999999999742 2222 3444554 357899999999999988887754
No 280
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=96.01 E-value=0.0082 Score=46.69 Aligned_cols=26 Identities=46% Similarity=0.635 Sum_probs=23.4
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
++.|+|||||+|.||+++|..|++..
T Consensus 145 ~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 145 NCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999854
No 281
>COG2229 Predicted GTPase [General function prediction only]
Probab=95.96 E-value=0.029 Score=41.43 Aligned_cols=53 Identities=11% Similarity=0.028 Sum_probs=42.4
Q ss_pred CcEEEEeeCCCCcCCCccCHHHHHHHHHHc--CCcEEEecCCCCCCHHHHHHHHHHH
Q psy1416 88 SGLRLVGNKNDDPQKKVVLTEDAQRFANQM--GIQLFETSAKDNINVEEMFMAITNL 142 (177)
Q Consensus 88 ~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~--~~~~~e~Sak~~~~v~~~f~~~~~~ 142 (177)
+|+++..||.||.+.+ +.++..++.+.. ..+.++++|..+.++.+....+...
T Consensus 122 ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 122 IPVVVAINKQDLFDAL--PPEKIREALKLELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred CCEEEEeeccccCCCC--CHHHHHHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence 8999999999998654 566666655554 7899999999999998887776644
No 282
>PLN00043 elongation factor 1-alpha; Provisional
Probab=95.96 E-value=0.01 Score=50.24 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=34.2
Q ss_pred CC-cEEEEeeCCCCcCCC--c----cCHHHHHHHHHHcC-----CcEEEecCCCCCCHHH
Q psy1416 87 PS-GLRLVGNKNDDPQKK--V----VLTEDAQRFANQMG-----IQLFETSAKDNINVEE 134 (177)
Q Consensus 87 ~~-~~ilvgnK~Dl~~~~--~----v~~~~~~~~a~~~~-----~~~~e~Sak~~~~v~~ 134 (177)
.+ ++|++.||+|+.+.. . -..++...+.++.| ++|+.+||++|.||.+
T Consensus 144 gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 144 GVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred CCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 55 478899999986210 0 01356667777766 5799999999999864
No 283
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=95.78 E-value=0.012 Score=51.48 Aligned_cols=57 Identities=25% Similarity=0.299 Sum_probs=47.6
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
+.|++++-|++|...++-+.. +...+.+..|++.+.+||++|.|++++...+.+...
T Consensus 108 g~p~ilaLNm~D~A~~~Gi~I-D~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 108 GIPMILALNMIDEAKKRGIRI-DIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAE 164 (653)
T ss_pred CCCeEEEeccHhhHHhcCCcc-cHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhcc
Confidence 678999999999987665543 556788999999999999999999999888876443
No 284
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=95.76 E-value=0.017 Score=47.92 Aligned_cols=44 Identities=14% Similarity=0.128 Sum_probs=30.2
Q ss_pred CCcE-EEEeeCCCCcCCCccC---HHHHHHHHHHcC-----CcEEEecCCCCC
Q psy1416 87 PSGL-RLVGNKNDDPQKKVVL---TEDAQRFANQMG-----IQLFETSAKDNI 130 (177)
Q Consensus 87 ~~~~-ilvgnK~Dl~~~~~v~---~~~~~~~a~~~~-----~~~~e~Sak~~~ 130 (177)
++|. |+|.||+|+.+..... .++...+.+.++ ++++.+||++|.
T Consensus 127 gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 127 GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 4564 5789999997532211 235666666665 689999999985
No 285
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.70 E-value=0.022 Score=46.33 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=36.8
Q ss_pred EEEEeeCCCCcCCCcc--CHHHHHHHHHH-------cCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 90 LRLVGNKNDDPQKKVV--LTEDAQRFANQ-------MGIQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 90 ~ilvgnK~Dl~~~~~v--~~~~~~~~a~~-------~~~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
-++|.||.|+...... ...+....... +..+++.+||+++.||++++..+.+.+.
T Consensus 197 DIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 197 DLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred heEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999998653211 11122211111 2357999999999999999999988643
No 286
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=95.45 E-value=0.043 Score=41.12 Aligned_cols=47 Identities=13% Similarity=0.175 Sum_probs=30.9
Q ss_pred CCc-EEEEeeCCCCcCCCcc---CHHHHHHHHHHcC-----CcEEEecCCCCCCHH
Q psy1416 87 PSG-LRLVGNKNDDPQKKVV---LTEDAQRFANQMG-----IQLFETSAKDNINVE 133 (177)
Q Consensus 87 ~~~-~ilvgnK~Dl~~~~~v---~~~~~~~~a~~~~-----~~~~e~Sak~~~~v~ 133 (177)
++| +|+|.||+|+..+... ..++...+....+ ++++.+||++|.|+.
T Consensus 117 ~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 117 GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence 455 7899999998532211 1224444544443 579999999999863
No 287
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=95.17 E-value=0.063 Score=40.08 Aligned_cols=63 Identities=13% Similarity=0.110 Sum_probs=40.9
Q ss_pred CCcEEEEeeCCCCcCCCc----c---CHH----HHHHHH----HHcC---CcEEEecCC--CCCCHHHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKV----V---LTE----DAQRFA----NQMG---IQLFETSAK--DNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~----v---~~~----~~~~~a----~~~~---~~~~e~Sak--~~~~v~~~f~~~~~~~~~~ 146 (177)
..|+++|+||+|+..... . ..+ +..+.+ ...+ -.+|-+|+. .++++..+...+...+.+.
T Consensus 107 ~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 107 GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 468999999999842100 0 111 111111 1222 368999998 6799999999999998876
Q ss_pred HHH
Q psy1416 147 KKE 149 (177)
Q Consensus 147 ~~~ 149 (177)
++-
T Consensus 187 ~~~ 189 (197)
T cd04104 187 KRH 189 (197)
T ss_pred HHH
Confidence 543
No 288
>KOG1145|consensus
Probab=95.13 E-value=0.1 Score=45.00 Aligned_cols=54 Identities=26% Similarity=0.207 Sum_probs=38.9
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHHHHHH-------cC--CcEEEecCCCCCCHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ-------MG--IQLFETSAKDNINVEEMFMAITNL 142 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~-------~~--~~~~e~Sak~~~~v~~~f~~~~~~ 142 (177)
-++|+|+..||+|-+.. .++....-... +| ...+.+||++|.|++.+-..++-.
T Consensus 252 A~VpiVvAinKiDkp~a---~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 252 ANVPIVVAINKIDKPGA---NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLL 314 (683)
T ss_pred cCCCEEEEEeccCCCCC---CHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHH
Confidence 47999999999997643 34444433333 33 468999999999999887776643
No 289
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=95.09 E-value=0.042 Score=46.77 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=47.2
Q ss_pred CCcEEEEeeCCCCcC----CCcc-------CHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQ----KKVV-------LTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSK 147 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~----~~~v-------~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~~ 147 (177)
.+|++||.+|+|.-. +... -..-.+.+|-.+|+.+|.||++...|++.++.+|...++...
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~~ 267 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGFP 267 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccCC
Confidence 689999999999631 1111 123456778889999999999999999999999888887643
No 290
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=95.02 E-value=0.082 Score=42.68 Aligned_cols=50 Identities=30% Similarity=0.288 Sum_probs=40.5
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~ 143 (177)
-+|.+.|.||+|+.. .++...+.+.. .++.+||+.+.|++++-..+.+.+
T Consensus 239 Y~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 239 YKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred eeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 478999999999964 35555555555 789999999999999998888765
No 291
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=95.00 E-value=0.02 Score=48.73 Aligned_cols=48 Identities=29% Similarity=0.210 Sum_probs=31.5
Q ss_pred CcEEEEeeCCCCcCCCccCHH----HHHHHHHHc----CCcEEEecCCCCCCHHHH
Q psy1416 88 SGLRLVGNKNDDPQKKVVLTE----DAQRFANQM----GIQLFETSAKDNINVEEM 135 (177)
Q Consensus 88 ~~~ilvgnK~Dl~~~~~v~~~----~~~~~a~~~----~~~~~e~Sak~~~~v~~~ 135 (177)
.|++||.||+|+...+.-..+ +...+.... ..+++.+||++|.||+++
T Consensus 161 ~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 161 KHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred CceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 368999999999743221112 222333333 367999999999999865
No 292
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=94.91 E-value=0.028 Score=45.31 Aligned_cols=57 Identities=19% Similarity=0.251 Sum_probs=42.6
Q ss_pred cEEEEeeCCCCcCCCc--cCHHHHHHHHHH---cCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416 89 GLRLVGNKNDDPQKKV--VLTEDAQRFANQ---MGIQLFETSAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 89 ~~ilvgnK~Dl~~~~~--v~~~~~~~~a~~---~~~~~~e~Sak~~~~v~~~f~~~~~~~~~ 145 (177)
-+|+|-||+||..+.. -..++.++|.+- -+++.+-+||.-+.||+.++..+.+.|..
T Consensus 142 ~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 142 NIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred eEEEEecccceecHHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 3899999999965321 124455555543 25789999999999999999998887754
No 293
>PRK12735 elongation factor Tu; Reviewed
Probab=94.75 E-value=0.05 Score=45.24 Aligned_cols=45 Identities=11% Similarity=0.111 Sum_probs=29.4
Q ss_pred CCcEE-EEeeCCCCcCCCcc---CHHHHHHHHHHcC-----CcEEEecCCCCCC
Q psy1416 87 PSGLR-LVGNKNDDPQKKVV---LTEDAQRFANQMG-----IQLFETSAKDNIN 131 (177)
Q Consensus 87 ~~~~i-lvgnK~Dl~~~~~v---~~~~~~~~a~~~~-----~~~~e~Sak~~~~ 131 (177)
++|.+ +|.||+|+.++... ...+...+...++ ++|+.+||++|.|
T Consensus 127 gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 127 GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhcccc
Confidence 56754 68999999642211 1235555666553 6799999999953
No 294
>COG0218 Predicted GTPase [General function prediction only]
Probab=94.70 E-value=0.08 Score=39.77 Aligned_cols=57 Identities=14% Similarity=0.094 Sum_probs=37.7
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC----Cc--EEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG----IQ--LFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~----~~--~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
++|+++|.||+|-....... ......++..+ .. ++..|+.++.|++++-..|...+.
T Consensus 135 ~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 135 GIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred CCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 78999999999976432211 11222333322 22 778899999999998888776654
No 295
>KOG1707|consensus
Probab=94.45 E-value=0.068 Score=46.13 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=53.2
Q ss_pred cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCc-EEEecCCCCCCHHHHHHH
Q psy1416 61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ-LFETSAKDNINVEEMFMA 138 (177)
Q Consensus 61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sak~~~~v~~~f~~ 138 (177)
+|.+++.||.-+. -++ .......+|+++|+.|+||....+...-.-.+++.+++++ -...|.++.-. .++|..
T Consensus 503 YDsS~p~sf~~~a~v~~----~~~~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~k 577 (625)
T KOG1707|consen 503 YDSSNPRSFEYLAEVYN----KYFDLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIK 577 (625)
T ss_pred cccCCchHHHHHHHHHH----HhhhccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHH
Confidence 7778899998775 222 1222258999999999999764432222227899999975 45556654222 789999
Q ss_pred HHHHHH
Q psy1416 139 ITNLVL 144 (177)
Q Consensus 139 ~~~~~~ 144 (177)
|+..+.
T Consensus 578 L~~~A~ 583 (625)
T KOG1707|consen 578 LATMAQ 583 (625)
T ss_pred HHHhhh
Confidence 997764
No 296
>KOG0705|consensus
Probab=94.42 E-value=0.069 Score=45.95 Aligned_cols=87 Identities=22% Similarity=0.327 Sum_probs=61.4
Q ss_pred cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCc--CCCccCHHHHHHHHHHc-CCcEEEecCCCCCCHHHHH
Q psy1416 61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDP--QKKVVLTEDAQRFANQM-GIQLFETSAKDNINVEEMF 136 (177)
Q Consensus 61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~--~~~~v~~~~~~~~a~~~-~~~~~e~Sak~~~~v~~~f 136 (177)
..+-+..||..+. ....+. .+.....+|+++||.+--.. ..|.+...++..++..+ .+.||+++|-+|.+|+..|
T Consensus 103 f~~~d~~s~q~v~~l~~~l~-~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf 181 (749)
T KOG0705|consen 103 FSVEDEQSFQAVQALAHEMS-SYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF 181 (749)
T ss_pred EEeccccCHHHHHHHHhhcc-cccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence 3345777887775 222221 11223578999999986543 35667777777766655 4789999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1416 137 MAITNLVLRSKK 148 (177)
Q Consensus 137 ~~~~~~~~~~~~ 148 (177)
..++..++....
T Consensus 182 ~~~~~k~i~~~~ 193 (749)
T KOG0705|consen 182 QEVAQKIVQLRK 193 (749)
T ss_pred HHHHHHHHHHHh
Confidence 999988876643
No 297
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=94.39 E-value=0.044 Score=45.76 Aligned_cols=47 Identities=28% Similarity=0.228 Sum_probs=31.1
Q ss_pred cEEEEeeCCCCcCCCccC----HHHHHHHHHHcC---CcEEEecCCCCCCHHHH
Q psy1416 89 GLRLVGNKNDDPQKKVVL----TEDAQRFANQMG---IQLFETSAKDNINVEEM 135 (177)
Q Consensus 89 ~~ilvgnK~Dl~~~~~v~----~~~~~~~a~~~~---~~~~e~Sak~~~~v~~~ 135 (177)
++++|.||+|+.....-. .++...+.+..+ ++++.+||++|.|++++
T Consensus 135 ~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 135 HVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred cEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 589999999996422111 122333344444 46999999999999863
No 298
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=94.38 E-value=0.041 Score=44.49 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=37.5
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHc-CCcEEEecCCCCCCHHHHHH-HHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQM-GIQLFETSAKDNINVEEMFM-AITNLVL 144 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~-~~~~~e~Sak~~~~v~~~f~-~~~~~~~ 144 (177)
..|+|+|.||.|+..... ....+.... ...++.+||+.+.+++++.. .+++.+.
T Consensus 214 ~KPvI~VlNK~Dl~~~~~----~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lP 269 (318)
T cd01899 214 SKPMVIAANKADIPDAEN----NISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDP 269 (318)
T ss_pred CCcEEEEEEHHHccChHH----HHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCC
Confidence 579999999999853221 111222222 45799999999999999887 4766654
No 299
>KOG1532|consensus
Probab=94.36 E-value=0.23 Score=39.39 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=39.3
Q ss_pred CCCcEEEEeeCCCCcCCCcc-----CHH---HHHHH---------HHH---------cCCcEEEecCCCCCCHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVV-----LTE---DAQRF---------ANQ---------MGIQLFETSAKDNINVEEMFMAI 139 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v-----~~~---~~~~~---------a~~---------~~~~~~e~Sak~~~~v~~~f~~~ 139 (177)
..+|+|+|-||+|+.+..-. ..+ ++..- .+. .++...-+||.+|.|.+++|..+
T Consensus 180 tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av 259 (366)
T KOG1532|consen 180 TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAV 259 (366)
T ss_pred ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHH
Confidence 37899999999999653210 111 11110 000 12568899999999999999888
Q ss_pred HHHHHH
Q psy1416 140 TNLVLR 145 (177)
Q Consensus 140 ~~~~~~ 145 (177)
-..+-+
T Consensus 260 ~~~vdE 265 (366)
T KOG1532|consen 260 DESVDE 265 (366)
T ss_pred HHHHHH
Confidence 766544
No 300
>PRK10218 GTP-binding protein; Provisional
Probab=94.28 E-value=0.11 Score=45.60 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=37.6
Q ss_pred CCcEEEEeeCCCCcCCCcc-CHHHHHHHHH-------HcCCcEEEecCCCCC----------CHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVV-LTEDAQRFAN-------QMGIQLFETSAKDNI----------NVEEMFMAITNLVL 144 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v-~~~~~~~~a~-------~~~~~~~e~Sak~~~----------~v~~~f~~~~~~~~ 144 (177)
++|+++|.||+|+...+.- ..++...+.. ...++++.+||++|. ++..+|..++..+.
T Consensus 120 gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 120 GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 6789999999999753321 1123333321 134678999999998 47777776665553
No 301
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=94.21 E-value=0.036 Score=43.08 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.0
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNL 26 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~ 26 (177)
+|+.+|+||||+|.||+++|..|+..
T Consensus 96 ~g~~v~~~SAktg~gi~eLf~~l~~~ 121 (245)
T TIGR00157 96 IGYQVLMTSSKNQDGLKELIEALQNR 121 (245)
T ss_pred CCCeEEEEecCCchhHHHHHhhhcCC
Confidence 36789999999999999999988764
No 302
>COG1160 Predicted GTPases [General function prediction only]
Probab=94.17 E-value=0.11 Score=43.57 Aligned_cols=53 Identities=25% Similarity=0.259 Sum_probs=39.6
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC-CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
+.|++||.||+|-... .+...+| -.+| -..+-+||.-|.|+.++...++..+.
T Consensus 112 ~kpviLvvNK~D~~~~----e~~~~ef-yslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 112 KKPVILVVNKIDNLKA----EELAYEF-YSLGFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred CCCEEEEEEcccCchh----hhhHHHH-HhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 5799999999996421 1222333 3344 46899999999999999999998873
No 303
>KOG1490|consensus
Probab=94.04 E-value=0.24 Score=42.33 Aligned_cols=64 Identities=19% Similarity=0.158 Sum_probs=48.4
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHH---HHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDA---QRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 150 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~---~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~~~~~ 150 (177)
+-|.|||.||+|+.....+..+.. .......+++++++|..+-+||-++=...+..++..+.+.
T Consensus 281 NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~ 347 (620)
T KOG1490|consen 281 NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALLAARVEQ 347 (620)
T ss_pred CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHHHHHHHH
Confidence 568999999999976555555432 2334445589999999999999999888888887765443
No 304
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=93.52 E-value=0.072 Score=40.21 Aligned_cols=14 Identities=36% Similarity=0.114 Sum_probs=12.5
Q ss_pred CCcEEEEeeCCCCc
Q psy1416 87 PSGLRLVGNKNDDP 100 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~ 100 (177)
+.|+++|+||+|+.
T Consensus 123 ~~p~iiviNK~D~~ 136 (213)
T cd04167 123 GLPIVLVINKIDRL 136 (213)
T ss_pred CCCEEEEEECcccC
Confidence 58999999999975
No 305
>KOG1423|consensus
Probab=93.15 E-value=0.17 Score=40.66 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=21.7
Q ss_pred cEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 120 QLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 120 ~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
.+|-+||++|+||+++-.++...+.
T Consensus 247 ~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 247 RVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred eEEEEecccccCHHHHHHHHHhcCC
Confidence 3899999999999999998887654
No 306
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=93.12 E-value=0.12 Score=42.35 Aligned_cols=46 Identities=26% Similarity=0.174 Sum_probs=35.0
Q ss_pred cEEEEeeCCCCcCCCccCH----HHHHHHHHHcCC---cEEEecCCCCCCHHH
Q psy1416 89 GLRLVGNKNDDPQKKVVLT----EDAQRFANQMGI---QLFETSAKDNINVEE 134 (177)
Q Consensus 89 ~~ilvgnK~Dl~~~~~v~~----~~~~~~a~~~~~---~~~e~Sak~~~~v~~ 134 (177)
.+||..||+||.+..+-.. .+-..||..++. .|+.+||+.|+||-.
T Consensus 141 hvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 141 HVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred EEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 4789999999987543222 345668888874 599999999999853
No 307
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=92.91 E-value=0.1 Score=46.02 Aligned_cols=47 Identities=26% Similarity=0.225 Sum_probs=31.0
Q ss_pred CcEEEEeeCCCCcCCCccCH----HHHHHHHHHcC---CcEEEecCCCCCCHHH
Q psy1416 88 SGLRLVGNKNDDPQKKVVLT----EDAQRFANQMG---IQLFETSAKDNINVEE 134 (177)
Q Consensus 88 ~~~ilvgnK~Dl~~~~~v~~----~~~~~~a~~~~---~~~~e~Sak~~~~v~~ 134 (177)
.+++||.||+|+.+...-.. .+...+....+ .+++.+||++|.|+++
T Consensus 158 ~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 158 RHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred CeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 46889999999964211111 22333444555 3589999999999974
No 308
>KOG4252|consensus
Probab=92.78 E-value=0.071 Score=39.49 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=28.9
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 34 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~~~ 34 (177)
++.||.||+|+..||..+|..|++++.+++..+
T Consensus 155 ~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq~ 187 (246)
T KOG4252|consen 155 HKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQS 187 (246)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999998876543
No 309
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=92.70 E-value=0.14 Score=38.41 Aligned_cols=42 Identities=7% Similarity=-0.212 Sum_probs=26.5
Q ss_pred cccchh-hhhcccc-hhhhhh-hhhccCCCCcEEEEeeCCCCcCC
Q psy1416 61 CTVLNE-CAWLGCG-WMTICP-IIYCWLFPSGLRLVGNKNDDPQK 102 (177)
Q Consensus 61 ~dit~~-~Sf~~~~-w~~~~~-~~~~~~~~~~~ilvgnK~Dl~~~ 102 (177)
.|.++. .++..+. |+..+. ......+.+|++||+||+||...
T Consensus 80 vD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 80 VDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred EECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 566665 5666664 654432 11112257999999999998653
No 310
>PRK09602 translation-associated GTPase; Reviewed
Probab=92.32 E-value=0.18 Score=42.09 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=31.3
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEM 135 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~ 135 (177)
..|+++|.||.|+.... +....+.+..+..++.+||+.+.+++++
T Consensus 217 ~KPvI~VlNK~D~~~~~----~~l~~i~~~~~~~vvpISA~~e~~l~~~ 261 (396)
T PRK09602 217 SKPMVIAANKADLPPAE----ENIERLKEEKYYIVVPTSAEAELALRRA 261 (396)
T ss_pred CCCEEEEEEchhcccch----HHHHHHHhcCCCcEEEEcchhhhhHHHH
Confidence 57999999999975322 1122222223456899999999999883
No 311
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.23 E-value=0.26 Score=39.41 Aligned_cols=55 Identities=22% Similarity=0.142 Sum_probs=34.9
Q ss_pred EEEEeeCCCCcCCCcc--CHHHHHHHH------HHcCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 90 LRLVGNKNDDPQKKVV--LTEDAQRFA------NQMGIQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 90 ~ilvgnK~Dl~~~~~v--~~~~~~~~a------~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
=++|.||.|...-... ...-+..+. ..|..+.+.|||.+|+||++++..+....-
T Consensus 192 Di~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 192 DIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred heeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 3789999996532100 001111111 123467999999999999999988876543
No 312
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=91.52 E-value=0.21 Score=43.80 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=24.2
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
+|+++++|||++|.||+++|..+++..
T Consensus 128 lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 128 LGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999998754
No 313
>KOG0071|consensus
Probab=91.45 E-value=0.51 Score=33.69 Aligned_cols=55 Identities=15% Similarity=0.066 Sum_probs=40.5
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHc-----CCcEEEecCCCCCCHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQM-----GIQLFETSAKDNINVEEMFMAITNL 142 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~-----~~~~~e~Sak~~~~v~~~f~~~~~~ 142 (177)
.++|+++.+||-||.+.+ ++.+...+.+-- ..-...++|.+|.++.|-|..+...
T Consensus 117 ~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn 176 (180)
T KOG0071|consen 117 RDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNN 176 (180)
T ss_pred hcceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhh
Confidence 478999999999998654 455555443322 2335689999999999999888754
No 314
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=91.25 E-value=0.19 Score=39.45 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=31.6
Q ss_pred cEEEEeeCCCCcCCCccCHHHHH---HHHHH----cCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416 89 GLRLVGNKNDDPQKKVVLTEDAQ---RFANQ----MGIQLFETSAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 89 ~~ilvgnK~Dl~~~~~v~~~~~~---~~a~~----~~~~~~e~Sak~~~~v~~~f~~~~~~~ 143 (177)
.=++|.||.|+..... +..+.. .+... |..+.+.|||.++.||++++..+.+..
T Consensus 169 aDi~vVNKaD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 169 ADIFVVNKADRPGADR-TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp -SEEEEE--SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ccEEEEeCCChHHHHH-HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3478999999653211 111212 22111 235799999999999999998887643
No 315
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=91.07 E-value=0.12 Score=39.97 Aligned_cols=56 Identities=23% Similarity=0.195 Sum_probs=31.4
Q ss_pred CCcEEEEeeCCCCcCCCc---c----C------------HHHHHHHHHH---cC-C-cEEEecCCCCCCHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKV---V----L------------TEDAQRFANQ---MG-I-QLFETSAKDNINVEEMFMAITNL 142 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~---v----~------------~~~~~~~a~~---~~-~-~~~e~Sak~~~~v~~~f~~~~~~ 142 (177)
++|.|.|.||+||..... + . ..-...+++- ++ . .|+.+|+++++++++++..+-+.
T Consensus 156 ~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 156 ELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp TSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred CCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 789999999999975210 0 0 0001111111 22 3 69999999999999998777654
No 316
>CHL00071 tufA elongation factor Tu
Probab=90.93 E-value=0.23 Score=41.50 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=30.7
Q ss_pred CCc-EEEEeeCCCCcCCCccC---HHHHHHHHHHcC-----CcEEEecCCCCCCH
Q psy1416 87 PSG-LRLVGNKNDDPQKKVVL---TEDAQRFANQMG-----IQLFETSAKDNINV 132 (177)
Q Consensus 87 ~~~-~ilvgnK~Dl~~~~~v~---~~~~~~~a~~~~-----~~~~e~Sak~~~~v 132 (177)
++| +|+|.||+|+.+..... .++...+.+..+ ++++.+||++|.|+
T Consensus 127 g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 127 GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence 567 77899999996532211 124445555443 67999999999764
No 317
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=89.61 E-value=0.54 Score=39.83 Aligned_cols=48 Identities=17% Similarity=0.222 Sum_probs=29.8
Q ss_pred CCc-EEEEeeCCCCcC--CCc--c--CHHHHHHHHHHcC-----CcEEEecCCCCCCHHH
Q psy1416 87 PSG-LRLVGNKNDDPQ--KKV--V--LTEDAQRFANQMG-----IQLFETSAKDNINVEE 134 (177)
Q Consensus 87 ~~~-~ilvgnK~Dl~~--~~~--v--~~~~~~~~a~~~~-----~~~~e~Sak~~~~v~~ 134 (177)
.+| +|++.||+|+.. ... . ..++...+....+ ++|+.+||.+|.|+.+
T Consensus 144 gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 144 GVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred CCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 455 679999999531 111 0 1233333334333 5799999999999864
No 318
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=89.39 E-value=1.6 Score=33.73 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=19.1
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416 119 IQLFETSAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 119 ~~~~e~Sak~~~~v~~~f~~~~~~~ 143 (177)
++.|-.||.++.||..++..+.+.+
T Consensus 210 ~Pv~~gsa~~~~Gv~~ll~~~~~~~ 234 (237)
T cd04168 210 FPVYHGSALKGIGIEELLEGITKLF 234 (237)
T ss_pred EEEEEccccCCcCHHHHHHHHHHhc
Confidence 4677778888888888887776654
No 319
>PRK15494 era GTPase Era; Provisional
Probab=88.88 E-value=0.38 Score=39.23 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=22.3
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
..+|++||++|.||+++|..|++.+
T Consensus 191 ~~i~~iSAktg~gv~eL~~~L~~~l 215 (339)
T PRK15494 191 SLLFPISALSGKNIDGLLEYITSKA 215 (339)
T ss_pred cEEEEEeccCccCHHHHHHHHHHhC
Confidence 4689999999999999999998854
No 320
>KOG0466|consensus
Probab=88.59 E-value=0.42 Score=38.56 Aligned_cols=57 Identities=19% Similarity=0.199 Sum_probs=41.3
Q ss_pred cEEEEeeCCCCcCCCcc--CHHHHHHHHHH---cCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416 89 GLRLVGNKNDDPQKKVV--LTEDAQRFANQ---MGIQLFETSAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 89 ~~ilvgnK~Dl~~~~~v--~~~~~~~~a~~---~~~~~~e~Sak~~~~v~~~f~~~~~~~~~ 145 (177)
.++++-||+||-.+.+- ..++...|.+. -+++.+.+||.-.+||+-+.+++++.+..
T Consensus 181 hiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv 242 (466)
T KOG0466|consen 181 HIIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV 242 (466)
T ss_pred eEEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence 47899999999643221 12334444443 25789999999999999999999988753
No 321
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=88.39 E-value=0.71 Score=35.34 Aligned_cols=25 Identities=28% Similarity=0.062 Sum_probs=18.0
Q ss_pred CCcEEEEeeCCCCc-CCCccCHHHHH
Q psy1416 87 PSGLRLVGNKNDDP-QKKVVLTEDAQ 111 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~-~~~~v~~~~~~ 111 (177)
++|++||+||+|+. .++.++.+++.
T Consensus 125 ~~p~ilviNKiD~~~~e~~~~~~~~~ 150 (222)
T cd01885 125 RVKPVLVINKIDRLILELKLSPEEAY 150 (222)
T ss_pred CCCEEEEEECCCcchhhhcCCHHHHH
Confidence 57999999999985 34455555443
No 322
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=88.08 E-value=1.2 Score=37.14 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=14.5
Q ss_pred CcEEEecCCCCCCHHHH
Q psy1416 119 IQLFETSAKDNINVEEM 135 (177)
Q Consensus 119 ~~~~e~Sak~~~~v~~~ 135 (177)
.+.|.+|+.||++++-+
T Consensus 314 vPi~~tSsVTg~GldlL 330 (527)
T COG5258 314 VPIFYTSSVTGEGLDLL 330 (527)
T ss_pred EEEEEEecccCccHHHH
Confidence 58999999999998643
No 323
>PRK00049 elongation factor Tu; Reviewed
Probab=87.98 E-value=1.4 Score=36.78 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=27.2
Q ss_pred CCcEE-EEeeCCCCcCCCccC---HHHHHHHHHHc-----CCcEEEecCCCCCC
Q psy1416 87 PSGLR-LVGNKNDDPQKKVVL---TEDAQRFANQM-----GIQLFETSAKDNIN 131 (177)
Q Consensus 87 ~~~~i-lvgnK~Dl~~~~~v~---~~~~~~~a~~~-----~~~~~e~Sak~~~~ 131 (177)
++|++ ++.||+|+....... ..+...+.... +++++.+||++|.+
T Consensus 127 g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 127 GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccC
Confidence 56765 689999996421111 12333333333 36799999999863
No 324
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=87.91 E-value=1 Score=36.39 Aligned_cols=62 Identities=26% Similarity=0.271 Sum_probs=43.6
Q ss_pred CCCcEEEEeeCCCCcCCC----------------ccCHHHHHHHHHHc----------CCcEEEecCCCCCCHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKK----------------VVLTEDAQRFANQM----------GIQLFETSAKDNINVEEMFMAI 139 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~----------------~v~~~~~~~~a~~~----------~~~~~e~Sak~~~~v~~~f~~~ 139 (177)
.+.|++|++||.|+-.++ .-..+.+..|.... .+..+.|+|.+..+|..+|..+
T Consensus 227 ~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v 306 (317)
T cd00066 227 ANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAV 306 (317)
T ss_pred cCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHH
Confidence 478999999999973210 12345555554431 2335679999999999999999
Q ss_pred HHHHHHHH
Q psy1416 140 TNLVLRSK 147 (177)
Q Consensus 140 ~~~~~~~~ 147 (177)
...|+...
T Consensus 307 ~~~i~~~~ 314 (317)
T cd00066 307 KDIILQNN 314 (317)
T ss_pred HHHHHHHH
Confidence 98887653
No 325
>COG1084 Predicted GTPase [General function prediction only]
Probab=87.69 E-value=0.85 Score=36.99 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=39.6
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC-CcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~~f~~~~~~~~~~ 146 (177)
..|+++|.||+|+.+...+ +++.......+ ......++..+.+++.+-..+...+.+.
T Consensus 280 ~~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 280 KAPIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred CCCeEEEEecccccchhHH--HHHHHHHHhhccccccceeeeehhhHHHHHHHHHHHhhch
Confidence 4799999999999754433 33333344444 3477888988989887777766665443
No 326
>PLN03126 Elongation factor Tu; Provisional
Probab=87.20 E-value=0.69 Score=39.58 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=29.8
Q ss_pred CCc-EEEEeeCCCCcCCCccC---HHHHHHHHHHc-----CCcEEEecCCCCCCH
Q psy1416 87 PSG-LRLVGNKNDDPQKKVVL---TEDAQRFANQM-----GIQLFETSAKDNINV 132 (177)
Q Consensus 87 ~~~-~ilvgnK~Dl~~~~~v~---~~~~~~~a~~~-----~~~~~e~Sak~~~~v 132 (177)
++| ++++.||+|+.+..... .++...+.... +++|+.+||.+|.++
T Consensus 196 gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 196 GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccc
Confidence 567 78899999996532111 12444454443 467999999998654
No 327
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=87.14 E-value=0.9 Score=33.31 Aligned_cols=15 Identities=40% Similarity=0.135 Sum_probs=13.1
Q ss_pred CCcEEEEeeCCCCcC
Q psy1416 87 PSGLRLVGNKNDDPQ 101 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~ 101 (177)
+.|++||.||+||.+
T Consensus 30 ~kp~IlVlNK~DL~~ 44 (172)
T cd04178 30 NKKLVLVLNKIDLVP 44 (172)
T ss_pred CCCEEEEEehhhcCC
Confidence 578999999999964
No 328
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=87.11 E-value=0.98 Score=37.96 Aligned_cols=56 Identities=20% Similarity=0.172 Sum_probs=37.8
Q ss_pred cEEEEeeCCCCcCCCccC--HHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 89 GLRLVGNKNDDPQKKVVL--TEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 89 ~~ilvgnK~Dl~~~~~v~--~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
-.++|.+|+|+.+...+. ..+......-..+++|-+||++|.||+++-.+|....-
T Consensus 105 ~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 105 NGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred ceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 359999999987542111 11111111122467899999999999999999988774
No 329
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=86.95 E-value=0.61 Score=36.91 Aligned_cols=41 Identities=10% Similarity=0.066 Sum_probs=30.5
Q ss_pred CCcEEEEeeCCCCcC--CCccCHHHHHHHHHHcCCcEEEecCC
Q psy1416 87 PSGLRLVGNKNDDPQ--KKVVLTEDAQRFANQMGIQLFETSAK 127 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~--~~~v~~~~~~~~a~~~~~~~~e~Sak 127 (177)
.+|+++|+||+|+.. +.........+.+..+++.+|.....
T Consensus 143 ~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 143 RVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred cCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence 689999999999854 23334556777788899998876653
No 330
>PLN03127 Elongation factor Tu; Provisional
Probab=86.80 E-value=1.4 Score=37.45 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=30.6
Q ss_pred CCc-EEEEeeCCCCcCCCccCH---HHHHHHHHHc-----CCcEEEecCC---CCCC-------HHHHHHHHHHH
Q psy1416 87 PSG-LRLVGNKNDDPQKKVVLT---EDAQRFANQM-----GIQLFETSAK---DNIN-------VEEMFMAITNL 142 (177)
Q Consensus 87 ~~~-~ilvgnK~Dl~~~~~v~~---~~~~~~a~~~-----~~~~~e~Sak---~~~~-------v~~~f~~~~~~ 142 (177)
++| +|+|.||+|+.++..... .+...+.... .++++.+||. +|.| +..++..+...
T Consensus 176 gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 176 GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence 577 578999999964322111 1222333322 2578888876 5555 45555544443
No 331
>KOG0461|consensus
Probab=86.58 E-value=1.7 Score=35.80 Aligned_cols=56 Identities=23% Similarity=0.267 Sum_probs=32.3
Q ss_pred cEEEEeeCCCCc--CCCccCHHH-HHHHHHHc-------CCcEEEecCCCC----CCHHHHHHHHHHHHH
Q psy1416 89 GLRLVGNKNDDP--QKKVVLTED-AQRFANQM-------GIQLFETSAKDN----INVEEMFMAITNLVL 144 (177)
Q Consensus 89 ~~ilvgnK~Dl~--~~~~v~~~~-~~~~a~~~-------~~~~~e~Sak~~----~~v~~~f~~~~~~~~ 144 (177)
..|+|.||+|+- ++|.-..++ ++.+++.+ +.+.+++||+.| ++|.++-+.+-..+.
T Consensus 124 klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 124 KLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred ceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 357888999874 344433332 22233222 268999999999 555555444444443
No 332
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=86.30 E-value=0.93 Score=33.39 Aligned_cols=24 Identities=38% Similarity=0.435 Sum_probs=21.7
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 4 QLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 4 ~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
.++.+||++|.||+++|..|.+.+
T Consensus 101 ~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 101 DVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998865
No 333
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=86.07 E-value=1.1 Score=37.77 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=23.1
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITNLVL 28 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~~i~ 28 (177)
.+++++||+++.||+++|..|++.+.
T Consensus 302 ~~i~~iSA~tgeGI~eL~~~L~~~l~ 327 (424)
T PRK12297 302 PKVFPISALTGQGLDELLYAVAELLE 327 (424)
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988664
No 334
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=85.89 E-value=0.77 Score=38.48 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=23.2
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
+++|+++||++|.||+++|..|...+
T Consensus 175 ~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 175 NAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred CCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 46799999999999999999998765
No 335
>PRK12740 elongation factor G; Reviewed
Probab=85.08 E-value=2.9 Score=37.27 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=22.3
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416 119 IQLFETSAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 119 ~~~~e~Sak~~~~v~~~f~~~~~~~~~ 145 (177)
++.+..||++|.||+.++..+...+..
T Consensus 237 ~Pv~~gSA~~~~Gv~~LLd~i~~~lPs 263 (668)
T PRK12740 237 VPVFCGSALKNKGVQRLLDAVVDYLPS 263 (668)
T ss_pred EEEEeccccCCccHHHHHHHHHHHCCC
Confidence 457889999999999999888876643
No 336
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=84.91 E-value=1.3 Score=31.34 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=22.9
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVL 28 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~ 28 (177)
+.+++.+||+++.|+++++..+.+.+.
T Consensus 70 ~~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 70 GIPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred CCcEEEEEccccccHHHHHHHHHHHHh
Confidence 457899999999999999998887653
No 337
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=84.28 E-value=0.98 Score=35.42 Aligned_cols=24 Identities=17% Similarity=0.016 Sum_probs=21.3
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 4 QLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 4 ~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
.++++||++|.||++++..|.+.+
T Consensus 140 ~v~~iSA~~g~gi~~L~~~l~~~l 163 (270)
T TIGR00436 140 DIVPISALTGDNTSFLAAFIEVHL 163 (270)
T ss_pred ceEEEecCCCCCHHHHHHHHHHhC
Confidence 589999999999999998887754
No 338
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=83.95 E-value=1.4 Score=37.97 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=24.8
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVLR 29 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~ 29 (177)
++++|++||+++.||+++|..|++.+..
T Consensus 314 g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 314 GWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5679999999999999999999987644
No 339
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=83.86 E-value=4.2 Score=35.29 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=23.1
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416 119 IQLFETSAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 119 ~~~~e~Sak~~~~v~~~f~~~~~~~~~ 145 (177)
++.|..||+++.||..++..+++.+..
T Consensus 249 ~PV~~GSA~~n~Gv~~LLd~i~~~~P~ 275 (526)
T PRK00741 249 TPVFFGSALNNFGVQEFLDAFVEWAPA 275 (526)
T ss_pred EEEEEeecccCcCHHHHHHHHHHHCCC
Confidence 468889999999999999998887753
No 340
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=83.83 E-value=1.2 Score=37.23 Aligned_cols=47 Identities=17% Similarity=0.102 Sum_probs=32.2
Q ss_pred cEEEEeeCCCCcCCCccCHHHHH----HHHHHcC-----CcEEEecCCCCCCHHHH
Q psy1416 89 GLRLVGNKNDDPQKKVVLTEDAQ----RFANQMG-----IQLFETSAKDNINVEEM 135 (177)
Q Consensus 89 ~~ilvgnK~Dl~~~~~v~~~~~~----~~a~~~~-----~~~~e~Sak~~~~v~~~ 135 (177)
.+|++.||+|+.+.++-..++.. .+.+..| ..|+-+||..|.|+.+.
T Consensus 147 ~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 147 QLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred eEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 47999999999875433333322 2333444 56999999999998654
No 341
>KOG4273|consensus
Probab=83.66 E-value=2 Score=33.75 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=51.6
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------------C---------c-------
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------------K---------V------- 104 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------------~---------~------- 104 (177)
..|++....+..+. |+..- .-..-+ ..+-+|||+|-... | -
T Consensus 85 vfdlse~s~l~alqdwl~ht---dinsfd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegs 160 (418)
T KOG4273|consen 85 VFDLSEKSGLDALQDWLPHT---DINSFD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGS 160 (418)
T ss_pred EEeccchhhhHHHHhhcccc---ccccch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccc
Confidence 37888888888887 98432 111112 24678999985210 0 0
Q ss_pred ----------cCHHHHHHHHHHcCCcEEEecCCC------------CCCHHHHHHHHHHHH
Q psy1416 105 ----------VLTEDAQRFANQMGIQLFETSAKD------------NINVEEMFMAITNLV 143 (177)
Q Consensus 105 ----------v~~~~~~~~a~~~~~~~~e~Sak~------------~~~v~~~f~~~~~~~ 143 (177)
.-...+.+|+.++|+.|+|.+|.. ..||+.+|..+-..+
T Consensus 161 sllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahm 221 (418)
T KOG4273|consen 161 SLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHM 221 (418)
T ss_pred cccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhcc
Confidence 112356789999999999999942 357888887766543
No 342
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=83.65 E-value=1.1 Score=37.34 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=23.2
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
+++|+++||++|.||+++|..|...+
T Consensus 170 ~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 170 NAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHhC
Confidence 46799999999999999999998765
No 343
>PRK13351 elongation factor G; Reviewed
Probab=83.48 E-value=3.3 Score=37.06 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=22.3
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416 119 IQLFETSAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 119 ~~~~e~Sak~~~~v~~~f~~~~~~~~~ 145 (177)
++.|..||++|.||+.++..++..+..
T Consensus 253 ~PV~~gSA~~~~Gv~~LLd~I~~~lPs 279 (687)
T PRK13351 253 VPVLFGSALKNIGIEPLLDAVVDYLPS 279 (687)
T ss_pred EEEEecccCcCccHHHHHHHHHHHCCC
Confidence 357778999999999999988887654
No 344
>PRK11058 GTPase HflX; Provisional
Probab=83.43 E-value=1.4 Score=37.13 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=21.7
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHH
Q psy1416 5 LFETSAKDNINVEEMFMAITNLVL 28 (177)
Q Consensus 5 f~EtSAk~~~nV~~~F~~l~~~i~ 28 (177)
++++||++|.||+++|..|.+.+.
T Consensus 339 ~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 339 RVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHhh
Confidence 489999999999999999998764
No 345
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=83.41 E-value=1 Score=39.63 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=22.3
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416 4 QLFETSAKDNINVEEMFMAITNLVL 28 (177)
Q Consensus 4 ~f~EtSAk~~~nV~~~F~~l~~~i~ 28 (177)
.++++||++|.||+++|..|++.+.
T Consensus 156 ~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 156 EAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred eEEEeeccCCCCHHHHHHHHHHhCC
Confidence 3799999999999999999998763
No 346
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=83.40 E-value=1.3 Score=37.57 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=23.7
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVL 28 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~ 28 (177)
+.+++++||++|.||+++|..|.+.+.
T Consensus 344 ~~~~i~iSAktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 344 GKPVIRISAKTGEGIDELREAIKELAF 370 (449)
T ss_pred CCceEEEEeeCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999988663
No 347
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=83.28 E-value=1.4 Score=37.30 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=24.1
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVLRS 30 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~ 30 (177)
+++|+++|||+ .||++.|..|.+.+.+.
T Consensus 335 ~~~~~~vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 335 VLNSSNLSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred CCceEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 56789999998 69999999999987643
No 348
>KOG0096|consensus
Probab=82.70 E-value=0.76 Score=34.43 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=24.5
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVL 28 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~ 28 (177)
++.|+|.|||++-|.+.-|.-|++++.
T Consensus 143 nl~y~~iSaksn~NfekPFl~LarKl~ 169 (216)
T KOG0096|consen 143 NLQYYEISAKSNYNFERPFLWLARKLT 169 (216)
T ss_pred cceeEEeecccccccccchHHHhhhhc
Confidence 467999999999999999999999763
No 349
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=82.56 E-value=1.1 Score=39.30 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=20.8
Q ss_pred CcEEEeccCCCCCHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITN 25 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~ 25 (177)
.+|+++||++|.||+++|..|+.
T Consensus 225 ~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 225 TIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred ceEEEEECCCCCChHHHHHhhhh
Confidence 46999999999999999998864
No 350
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=82.23 E-value=1.1 Score=26.80 Aligned_cols=13 Identities=31% Similarity=0.077 Sum_probs=8.8
Q ss_pred CCCcEEEEeeCCC
Q psy1416 86 FPSGLRLVGNKND 98 (177)
Q Consensus 86 ~~~~~ilvgnK~D 98 (177)
.+.|+++|.||+|
T Consensus 46 ~~~P~i~V~nK~D 58 (58)
T PF06858_consen 46 PNKPVIVVLNKID 58 (58)
T ss_dssp TTS-EEEEE--TT
T ss_pred CCCCEEEEEeccC
Confidence 3789999999998
No 351
>KOG1144|consensus
Probab=81.75 E-value=4.3 Score=36.72 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=23.3
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHHHH
Q psy1416 121 LFETSAKDNINVEEMFMAITNLVLRSKKE 149 (177)
Q Consensus 121 ~~e~Sak~~~~v~~~f~~~~~~~~~~~~~ 149 (177)
.+.|||.+|+||.+|...|+......+..
T Consensus 664 iVPTSA~sGeGipdLl~llv~ltQk~m~~ 692 (1064)
T KOG1144|consen 664 IVPTSAISGEGIPDLLLLLVQLTQKTMVE 692 (1064)
T ss_pred eeecccccCCCcHHHHHHHHHHHHHHHHH
Confidence 45799999999999999888776655544
No 352
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=81.52 E-value=1.4 Score=38.59 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=23.4
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVL 28 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~ 28 (177)
+++|+++||++|.||+++|..|...+-
T Consensus 140 ~~~ii~vSA~tG~GI~eL~~~L~~l~~ 166 (581)
T TIGR00475 140 NAKIFKTSAKTGQGIGELKKELKNLLE 166 (581)
T ss_pred CCcEEEEeCCCCCCchhHHHHHHHHHH
Confidence 478999999999999999998877543
No 353
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=81.45 E-value=4.9 Score=32.86 Aligned_cols=62 Identities=27% Similarity=0.256 Sum_probs=42.9
Q ss_pred CCCcEEEEeeCCCCcCCC---------------ccCHHHHHHHHHH-----c------CCcEEEecCCCCCCHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKK---------------VVLTEDAQRFANQ-----M------GIQLFETSAKDNINVEEMFMAI 139 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~---------------~v~~~~~~~~a~~-----~------~~~~~e~Sak~~~~v~~~f~~~ 139 (177)
.++|++|++||.|+-.+. .-..+.+..|... . .+..+.|+|.+-.++..+|..+
T Consensus 250 ~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v 329 (342)
T smart00275 250 ANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAV 329 (342)
T ss_pred cCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHH
Confidence 578999999999983210 0133445444433 1 1335689999999999999998
Q ss_pred HHHHHHHH
Q psy1416 140 TNLVLRSK 147 (177)
Q Consensus 140 ~~~~~~~~ 147 (177)
...|++..
T Consensus 330 ~~~I~~~~ 337 (342)
T smart00275 330 KDIILQRN 337 (342)
T ss_pred HHHHHHHH
Confidence 88888754
No 354
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=81.25 E-value=3.4 Score=35.02 Aligned_cols=66 Identities=3% Similarity=0.069 Sum_probs=39.8
Q ss_pred hhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCC--CCCCHHHHHHHHH
Q psy1416 68 AWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAK--DNINVEEMFMAIT 140 (177)
Q Consensus 68 Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak--~~~~v~~~f~~~~ 140 (177)
.|.... |+.++.. .+.|+++|.||.|-.... +.+.+..+.+.++.+++.+|+. +-..|..+|..++
T Consensus 164 ~y~~aEe~~i~eLk~-----~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 164 DYVEAEERVIEELKE-----LNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred cchHHHHHHHHHHHh-----cCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence 444442 7766632 278999999999943221 3444556667778877777663 3344555554444
No 355
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=80.31 E-value=2.6 Score=31.35 Aligned_cols=28 Identities=39% Similarity=0.496 Sum_probs=25.2
Q ss_pred cEEEeccC--CCCCHHHHHHHHHHHHHHHH
Q psy1416 4 QLFETSAK--DNINVEEMFMAITNLVLRSK 31 (177)
Q Consensus 4 ~f~EtSAk--~~~nV~~~F~~l~~~i~~~~ 31 (177)
.|+++||+ ++.||+++|..+++.+....
T Consensus 159 ~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 159 ALLETSAKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred ceeEeecccCCCcCHHHHHHHHHHHHHHhh
Confidence 38999999 99999999999999987654
No 356
>PRK12288 GTPase RsgA; Reviewed
Probab=79.31 E-value=1.7 Score=35.60 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.6
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
|++++++||+++.||+++|..|...+
T Consensus 182 g~~v~~vSA~tg~GideL~~~L~~ki 207 (347)
T PRK12288 182 GYRVLMVSSHTGEGLEELEAALTGRI 207 (347)
T ss_pred CCeEEEEeCCCCcCHHHHHHHHhhCC
Confidence 57899999999999999998887643
No 357
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=78.61 E-value=1.7 Score=37.26 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.2
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHH
Q psy1416 5 LFETSAKDNINVEEMFMAITNLVL 28 (177)
Q Consensus 5 f~EtSAk~~~nV~~~F~~l~~~i~ 28 (177)
-+.+|||+|.||+++.+.++++|.
T Consensus 163 av~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 163 AVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred heeEecccCCCHHHHHHHHHhhCC
Confidence 467999999999999999998874
No 358
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=78.20 E-value=2.7 Score=34.56 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=20.0
Q ss_pred cEEEeccCCCCCHHHHHHHHHH
Q psy1416 4 QLFETSAKDNINVEEMFMAITN 25 (177)
Q Consensus 4 ~f~EtSAk~~~nV~~~F~~l~~ 25 (177)
.++++||++|.||+++|..|.+
T Consensus 129 ~i~~vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 129 DIILVSAKKGNGIDELLDKIKK 150 (360)
T ss_pred cEEEecCCCCCCHHHHHHHHHH
Confidence 3899999999999999999865
No 359
>CHL00189 infB translation initiation factor 2; Provisional
Probab=78.06 E-value=2 Score=38.80 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.9
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITNL 26 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~~ 26 (177)
++|+++||++|.||+++|..|+..
T Consensus 385 vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 385 TPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred ceEEEEECCCCCCHHHHHHhhhhh
Confidence 679999999999999999988774
No 360
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=78.05 E-value=1.8 Score=39.40 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=21.3
Q ss_pred CcEEEeccCCCCCHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITN 25 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~ 25 (177)
++|+++||++|.||+++|..|..
T Consensus 427 vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 427 TIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred ceEEEEeCCCCCCchHHHHhhhh
Confidence 68999999999999999998875
No 361
>KOG0090|consensus
Probab=77.73 E-value=2.4 Score=32.47 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=17.4
Q ss_pred CcEEEecCCCCCCHHHHHHHHHH
Q psy1416 119 IQLFETSAKDNINVEEMFMAITN 141 (177)
Q Consensus 119 ~~~~e~Sak~~~~v~~~f~~~~~ 141 (177)
..|.|+|++++ +|+++-..+.+
T Consensus 215 V~F~e~S~~~~-~i~~~~~wi~~ 236 (238)
T KOG0090|consen 215 VTFAEASAKTG-EIDQWESWIRE 236 (238)
T ss_pred eEEeecccCcC-ChHHHHHHHHH
Confidence 56899999999 88887666654
No 362
>COG1161 Predicted GTPases [General function prediction only]
Probab=76.45 E-value=5.6 Score=32.23 Aligned_cols=48 Identities=27% Similarity=0.183 Sum_probs=30.7
Q ss_pred CcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q psy1416 88 SGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136 (177)
Q Consensus 88 ~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f 136 (177)
-|.++|.||+||.... +..+=...++++.+..-+.++++.+.++..+-
T Consensus 62 k~~i~vlNK~DL~~~~-~~~~W~~~~~~~~~~~~~~v~~~~~~~~~~i~ 109 (322)
T COG1161 62 KPKLLVLNKADLAPKE-VTKKWKKYFKKEEGIKPIFVSAKSRQGGKKIR 109 (322)
T ss_pred CCcEEEEehhhcCCHH-HHHHHHHHHHhcCCCccEEEEeecccCccchH
Confidence 4559999999997543 23333334444445666788888777765554
No 363
>KOG1191|consensus
Probab=75.84 E-value=2.7 Score=35.99 Aligned_cols=58 Identities=24% Similarity=0.245 Sum_probs=37.2
Q ss_pred CcEEEEeeCCCCcCC-CccCHHHHHHHHHHcC---C-cEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416 88 SGLRLVGNKNDDPQK-KVVLTEDAQRFANQMG---I-QLFETSAKDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 88 ~~~ilvgnK~Dl~~~-~~v~~~~~~~~a~~~~---~-~~~e~Sak~~~~v~~~f~~~~~~~~~~ 146 (177)
-|+++|.||.|+..+ +..+... ..+....+ + ...++|++++++++++-..+...+...
T Consensus 390 ~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 390 QRIILVANKSDLVSKIPEMTKIP-VVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred cceEEEechhhccCccccccCCc-eeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 579999999999754 2222111 11111111 2 356799999999999888887776554
No 364
>KOG0082|consensus
Probab=75.82 E-value=7.3 Score=32.08 Aligned_cols=62 Identities=26% Similarity=0.285 Sum_probs=43.8
Q ss_pred CCCcEEEEeeCCCCcCC--------------Cc-cCHHHHHHHHHHc----------CCcEEEecCCCCCCHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQK--------------KV-VLTEDAQRFANQM----------GIQLFETSAKDNINVEEMFMAIT 140 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~--------------~~-v~~~~~~~~a~~~----------~~~~~e~Sak~~~~v~~~f~~~~ 140 (177)
.+.++||.-||.||-.+ .. -+.+++..|.... .+-...|.|.+-.+|+.+|..+.
T Consensus 261 ~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~ 340 (354)
T KOG0082|consen 261 ANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVT 340 (354)
T ss_pred ccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHH
Confidence 46899999999999321 11 2345555554431 13356789999999999999999
Q ss_pred HHHHHHH
Q psy1416 141 NLVLRSK 147 (177)
Q Consensus 141 ~~~~~~~ 147 (177)
..|....
T Consensus 341 d~Ii~~n 347 (354)
T KOG0082|consen 341 DTIIQNN 347 (354)
T ss_pred HHHHHHH
Confidence 9888754
No 365
>PRK00098 GTPase RsgA; Reviewed
Probab=75.16 E-value=2.7 Score=33.56 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.0
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITN 25 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~ 25 (177)
|++++++||+++.||+++|..|..
T Consensus 141 g~~v~~vSA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 141 GYDVLELSAKEGEGLDELKPLLAG 164 (298)
T ss_pred CCeEEEEeCCCCccHHHHHhhccC
Confidence 578899999999999999987754
No 366
>KOG0074|consensus
Probab=74.89 E-value=1.1 Score=32.07 Aligned_cols=73 Identities=12% Similarity=-0.011 Sum_probs=43.8
Q ss_pred cccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC--------CcEEEecCCCCC
Q psy1416 61 CTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG--------IQLFETSAKDNI 130 (177)
Q Consensus 61 ~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~--------~~~~e~Sak~~~ 130 (177)
-|-+|+.-|+.+. ..+.++... ...+|+.+.+||-||...-. +.+.|...+ ...-++||+++.
T Consensus 93 IDS~D~krfeE~~~el~ELleeeK--l~~vpvlIfankQdlltaa~-----~eeia~klnl~~lrdRswhIq~csals~e 165 (185)
T KOG0074|consen 93 IDSTDEKRFEEISEELVELLEEEK--LAEVPVLIFANKQDLLTAAK-----VEEIALKLNLAGLRDRSWHIQECSALSLE 165 (185)
T ss_pred EeCCchHhHHHHHHHHHHHhhhhh--hhccceeehhhhhHHHhhcc-----hHHHHHhcchhhhhhceEEeeeCcccccc
Confidence 4556777777664 222222111 23689999999999864322 222333322 346789999999
Q ss_pred CHHHHHHHHH
Q psy1416 131 NVEEMFMAIT 140 (177)
Q Consensus 131 ~v~~~f~~~~ 140 (177)
++.+....++
T Consensus 166 g~~dg~~wv~ 175 (185)
T KOG0074|consen 166 GSTDGSDWVQ 175 (185)
T ss_pred CccCcchhhh
Confidence 9877655544
No 367
>KOG1143|consensus
Probab=74.87 E-value=7 Score=32.68 Aligned_cols=49 Identities=16% Similarity=0.202 Sum_probs=34.6
Q ss_pred CCcEEEEeeCCCCcCCC------------------------ccCHHHHHHHHHHc----CCcEEEecCCCCCCHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKK------------------------VVLTEDAQRFANQM----GIQLFETSAKDNINVEEM 135 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~------------------------~v~~~~~~~~a~~~----~~~~~e~Sak~~~~v~~~ 135 (177)
++|++++.+|+||.++. .-+..++-..|++. -.+.|-+|..+|++++-+
T Consensus 303 ~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 303 NIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred CCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 79999999999997541 12234454444443 257999999999998644
No 368
>KOG0077|consensus
Probab=74.81 E-value=2.3 Score=31.29 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=16.9
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDA 110 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~ 110 (177)
.++|+++.|||+|... .+++++.
T Consensus 120 a~vp~lilgnKId~p~--a~se~~l 142 (193)
T KOG0077|consen 120 ATVPFLILGNKIDIPY--AASEDEL 142 (193)
T ss_pred hcCcceeecccccCCC--cccHHHH
Confidence 4789999999999974 3344443
No 369
>PRK00089 era GTPase Era; Reviewed
Probab=74.16 E-value=3.7 Score=32.37 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.2
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
..++++||+++.||+++|..|.+.+
T Consensus 146 ~~i~~iSA~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 146 AEIVPISALKGDNVDELLDVIAKYL 170 (292)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhC
Confidence 4589999999999999999998865
No 370
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=73.09 E-value=12 Score=32.59 Aligned_cols=56 Identities=13% Similarity=0.146 Sum_probs=38.6
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecC--CCCCCHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSA--KDNINVEEMFMAITNLV 143 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa--k~~~~v~~~f~~~~~~~ 143 (177)
-++|++++.||.|+..+. ..+..+++|.+.|+++..+.. +-|.|-.++-..+++.+
T Consensus 371 FGvPvVVAINKFd~DTe~--Ei~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~ 428 (557)
T PRK13505 371 FGVPVVVAINKFVTDTDA--EIAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELI 428 (557)
T ss_pred cCCCEEEEEeCCCCCCHH--HHHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHH
Confidence 379999999999986543 246678899999988774433 55566555555555444
No 371
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=72.89 E-value=5.3 Score=31.91 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.2
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
.+++.+||++|.||++.+..|.+..
T Consensus 213 ~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 213 PPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred CCEEEEEccCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998863
No 372
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=71.98 E-value=3.7 Score=32.33 Aligned_cols=15 Identities=20% Similarity=-0.090 Sum_probs=13.2
Q ss_pred CCcEEEEeeCCCCcC
Q psy1416 87 PSGLRLVGNKNDDPQ 101 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~ 101 (177)
+.|++++.||+|+.+
T Consensus 116 ~~p~ivviNK~D~~~ 130 (270)
T cd01886 116 NVPRIAFVNKMDRTG 130 (270)
T ss_pred CCCEEEEEECCCCCC
Confidence 679999999999874
No 373
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=70.28 E-value=4.4 Score=32.17 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.5
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITN 25 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~ 25 (177)
|.+++.+||+++.|+++++..|..
T Consensus 138 g~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 138 GYPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred CCeEEEEECCCCccHHHHHhhhcc
Confidence 678999999999999999988775
No 374
>KOG0458|consensus
Probab=70.27 E-value=6.2 Score=34.49 Aligned_cols=48 Identities=21% Similarity=0.163 Sum_probs=32.3
Q ss_pred CcEEEEeeCCCCcCCCccCHHHHH----HHH-HHcC-----CcEEEecCCCCCCHHHH
Q psy1416 88 SGLRLVGNKNDDPQKKVVLTEDAQ----RFA-NQMG-----IQLFETSAKDNINVEEM 135 (177)
Q Consensus 88 ~~~ilvgnK~Dl~~~~~v~~~~~~----~~a-~~~~-----~~~~e~Sak~~~~v~~~ 135 (177)
-.++++.||+|+.+..+-..++.. .|. +..| +.|+-+|+.+|+|+-..
T Consensus 316 ~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 316 SQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 458999999999865433333333 233 2233 47999999999998654
No 375
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=70.19 E-value=7.2 Score=30.68 Aligned_cols=64 Identities=13% Similarity=0.002 Sum_probs=38.5
Q ss_pred CCCcEEEEeeCCCCcCC-Cc-cCHHHHHHHHHHcCCcEEEecCCCCCC---HHHHHHHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQK-KV-VLTEDAQRFANQMGIQLFETSAKDNIN---VEEMFMAITNLVLRSKKE 149 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~-~~-v~~~~~~~~a~~~~~~~~e~Sak~~~~---v~~~f~~~~~~~~~~~~~ 149 (177)
-.+|+.||.+|+|+-.. .. ...-......+-+|+.+-......+.. +++.|..+...+......
T Consensus 68 ~~~PVYvv~Tk~D~l~GF~ef~~~L~~~~r~q~lG~t~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 136 (266)
T PF14331_consen 68 VRLPVYVVFTKCDLLPGFDEFFSDLSEEEREQVLGFTFPYDEDADGDAWAWFDEEFDELVARLNARVLE 136 (266)
T ss_pred CCCCeEeeeECCCcccCHHHHHHhCCHHHHhCCcccccCCccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999998531 00 000111222344565554444555555 888888888877766544
No 376
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=69.69 E-value=4.7 Score=35.69 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=22.3
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
++++++||++|.||++++..|.+..
T Consensus 141 ~~ii~VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 141 AKLFVTAATEGRGIDALREHLLQLP 165 (614)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhh
Confidence 6799999999999999999998643
No 377
>PRK05433 GTP-binding protein LepA; Provisional
Probab=69.29 E-value=4.6 Score=35.65 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=22.1
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHH
Q psy1416 5 LFETSAKDNINVEEMFMAITNLVL 28 (177)
Q Consensus 5 f~EtSAk~~~nV~~~F~~l~~~i~ 28 (177)
++++||++|.||+++|..|++.+.
T Consensus 161 vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 161 AVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred EEEEecCCCCCHHHHHHHHHHhCc
Confidence 799999999999999999998764
No 378
>PRK12289 GTPase RsgA; Reviewed
Probab=68.69 E-value=3.2 Score=34.12 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=23.1
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
+|+.++.+||+++.||+++|..|...+
T Consensus 148 ~g~~v~~iSA~tg~GI~eL~~~L~~ki 174 (352)
T PRK12289 148 WGYQPLFISVETGIGLEALLEQLRNKI 174 (352)
T ss_pred cCCeEEEEEcCCCCCHHHHhhhhccce
Confidence 367789999999999999999887654
No 379
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=68.54 E-value=8.4 Score=30.03 Aligned_cols=16 Identities=19% Similarity=-0.027 Sum_probs=13.8
Q ss_pred CCcEEEEeeCCCCcCC
Q psy1416 87 PSGLRLVGNKNDDPQK 102 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~ 102 (177)
++|+++|.||+|+...
T Consensus 116 ~~p~iivvNK~D~~~~ 131 (268)
T cd04170 116 GIPRIIFINKMDRERA 131 (268)
T ss_pred CCCEEEEEECCccCCC
Confidence 6899999999998753
No 380
>PTZ00258 GTP-binding protein; Provisional
Probab=67.53 E-value=6 Score=33.03 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=30.0
Q ss_pred CCcEEEEeeCC--CCcCCCccCHHHHHHHHHHc-CCcEEEecCCCCC
Q psy1416 87 PSGLRLVGNKN--DDPQKKVVLTEDAQRFANQM-GIQLFETSAKDNI 130 (177)
Q Consensus 87 ~~~~ilvgnK~--Dl~~~~~v~~~~~~~~a~~~-~~~~~e~Sak~~~ 130 (177)
.-|+++|.|+. |+.....-..++...++... +..++.+||+...
T Consensus 220 ~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E~ 266 (390)
T PTZ00258 220 AKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFEE 266 (390)
T ss_pred cCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHHH
Confidence 45899999999 87211111345566677777 4889999997554
No 381
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=67.39 E-value=2.9 Score=35.08 Aligned_cols=19 Identities=21% Similarity=0.076 Sum_probs=17.1
Q ss_pred CcEEEeccCCCCCHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFM 21 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~ 21 (177)
++|+++||++|.||+++|.
T Consensus 182 ~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 182 VPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred ceEEEeecccccccccccc
Confidence 6799999999999998775
No 382
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=67.31 E-value=8.2 Score=32.20 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=22.3
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416 4 QLFETSAKDNINVEEMFMAITNLVL 28 (177)
Q Consensus 4 ~f~EtSAk~~~nV~~~F~~l~~~i~ 28 (177)
.++.+||+++.||++++..|++.+.
T Consensus 309 ~Vi~ISA~tg~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 309 PVYLISAASGLGVKELCWDLMTFIE 333 (390)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHhh
Confidence 5789999999999999999988653
No 383
>KOG0462|consensus
Probab=66.86 E-value=4.5 Score=35.22 Aligned_cols=23 Identities=43% Similarity=0.517 Sum_probs=20.9
Q ss_pred EEEeccCCCCCHHHHHHHHHHHH
Q psy1416 5 LFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 5 f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
-+-+|||+|.||++++..+.+.|
T Consensus 212 ~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 212 VIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred eEEEEeccCccHHHHHHHHHhhC
Confidence 56789999999999999999887
No 384
>KOG3905|consensus
Probab=66.40 E-value=6.5 Score=32.23 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=26.6
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNLVLRS 30 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~ 30 (177)
||...|-||+|+..|++-++..|+.+++-.
T Consensus 263 ~GaaLiyTSvKE~KNidllyKYivhr~yG~ 292 (473)
T KOG3905|consen 263 YGAALIYTSVKETKNIDLLYKYIVHRSYGF 292 (473)
T ss_pred cCceeEEeecccccchHHHHHHHHHHhcCc
Confidence 577889999999999999999999988753
No 385
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=66.10 E-value=16 Score=26.64 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q psy1416 109 DAQRFANQMGIQLFETSAKDNINVEEMFMAITN 141 (177)
Q Consensus 109 ~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~ 141 (177)
+....-+..|++.+.+|++++.+++++...+..
T Consensus 3 ~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~ 35 (161)
T PF03193_consen 3 ELLEQYEKLGYPVFFISAKTGEGIEELKELLKG 35 (161)
T ss_dssp HHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT
T ss_pred HHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC
Confidence 344556778999999999999999988766543
No 386
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=65.88 E-value=15 Score=28.85 Aligned_cols=17 Identities=18% Similarity=-0.074 Sum_probs=14.1
Q ss_pred CCCcEEEEeeCCCCcCC
Q psy1416 86 FPSGLRLVGNKNDDPQK 102 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~ 102 (177)
.++|+++++||+|+...
T Consensus 122 ~~~P~iivvNK~D~~~a 138 (267)
T cd04169 122 RGIPIITFINKLDREGR 138 (267)
T ss_pred cCCCEEEEEECCccCCC
Confidence 36899999999998643
No 387
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=65.49 E-value=9.1 Score=31.68 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=31.6
Q ss_pred CCCcEEEEeeCCCCcCCCc-cCHHHHHHHHHHcCCcEEEecCC
Q psy1416 86 FPSGLRLVGNKNDDPQKKV-VLTEDAQRFANQMGIQLFETSAK 127 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~-v~~~~~~~~a~~~~~~~~e~Sak 127 (177)
..-|+++|+||.|...... -.....+.++...+..++-+||+
T Consensus 205 t~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~~~vV~~sA~ 247 (372)
T COG0012 205 TAKPMLYVANVSEDDLANLNEYVKRLKELAAKENAEVVPVSAA 247 (372)
T ss_pred hcCCeEEEEECCcccccchhHHHHHHHHHhhhcCCcEEEeeHH
Confidence 3569999999999864321 11466777888888899999986
No 388
>PRK12739 elongation factor G; Reviewed
Probab=65.32 E-value=24 Score=31.79 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=18.9
Q ss_pred cEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 120 QLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 120 ~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
+.+..||.++.||+.++..+++.+.
T Consensus 254 Pv~~gSa~~~~Gv~~LLd~I~~~lP 278 (691)
T PRK12739 254 PVLCGSAFKNKGVQPLLDAVVDYLP 278 (691)
T ss_pred EEEeccccCCccHHHHHHHHHHHCC
Confidence 4666788888888888877777664
No 389
>KOG1424|consensus
Probab=65.08 E-value=6.1 Score=34.10 Aligned_cols=38 Identities=21% Similarity=0.004 Sum_probs=25.7
Q ss_pred cEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCC
Q psy1416 89 GLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKD 128 (177)
Q Consensus 89 ~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~ 128 (177)
-.+|+.||.||....++ ..-.++-...+++++..||..
T Consensus 207 ~~~LLvNKaDLl~~~qr--~aWa~YF~~~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 207 ANVLLVNKADLLPPEQR--VAWAEYFRQNNIPVVFFSALA 244 (562)
T ss_pred ceEEEEehhhcCCHHHH--HHHHHHHHhcCceEEEEeccc
Confidence 46899999999643221 222334455679999999986
No 390
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=64.56 E-value=8 Score=29.86 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=39.9
Q ss_pred cCCCCcEEEEeeCCCCcC--CCccC----HHHHHHHHHHcC---CcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416 84 WLFPSGLRLVGNKNDDPQ--KKVVL----TEDAQRFANQMG---IQLFETSAKDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 84 ~~~~~~~ilvgnK~Dl~~--~~~v~----~~~~~~~a~~~~---~~~~e~Sak~~~~v~~~f~~~~~~~~~~ 146 (177)
..+++.+.+..+|+|+.. .|... .+.....+...+ +.|+.||.-+ +.+.++|-.++..++..
T Consensus 108 ~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP~ 178 (232)
T PF04670_consen 108 YSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLIPN 178 (232)
T ss_dssp HSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTSTT
T ss_pred hCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHccc
Confidence 346899999999999853 22211 123334444555 7899999988 58899998888877643
No 391
>PRK13796 GTPase YqeH; Provisional
Probab=63.27 E-value=9.1 Score=31.57 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.6
Q ss_pred cEEEeccCCCCCHHHHHHHHHHH
Q psy1416 4 QLFETSAKDNINVEEMFMAITNL 26 (177)
Q Consensus 4 ~f~EtSAk~~~nV~~~F~~l~~~ 26 (177)
.++++||++|.||+++|..|.+.
T Consensus 135 ~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 135 DVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999764
No 392
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=61.89 E-value=6.8 Score=29.07 Aligned_cols=18 Identities=17% Similarity=-0.021 Sum_probs=12.0
Q ss_pred CCCCcEEEEeeCCCCcCC
Q psy1416 85 LFPSGLRLVGNKNDDPQK 102 (177)
Q Consensus 85 ~~~~~~ilvgnK~Dl~~~ 102 (177)
...+|++|+.||.|+...
T Consensus 110 ~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 110 KNKPPILIACNKQDLFTA 127 (181)
T ss_dssp TT--EEEEEEE-TTSTT-
T ss_pred cCCCCEEEEEeCcccccc
Confidence 457999999999999653
No 393
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=60.64 E-value=13 Score=30.27 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.4
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
.+++.+||+++.||++++..|.+.+
T Consensus 235 ~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 235 PPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998854
No 394
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=59.35 E-value=9 Score=33.05 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=19.8
Q ss_pred CcEEEeccCCCCCHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITN 25 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~ 25 (177)
..|..+|||+|.||+++...++-
T Consensus 145 v~~VpvSA~tg~Gi~eLL~~ill 167 (509)
T COG0532 145 VIFVPVSAKTGEGIDELLELILL 167 (509)
T ss_pred eEEEEeeccCCCCHHHHHHHHHH
Confidence 56899999999999999876654
No 395
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=59.31 E-value=13 Score=28.27 Aligned_cols=46 Identities=17% Similarity=0.013 Sum_probs=25.6
Q ss_pred CCc-EEEEeeCCCCcCCCc-cC--HHHHHH-HHHH--cCCcEEEecCCCCCCH
Q psy1416 87 PSG-LRLVGNKNDDPQKKV-VL--TEDAQR-FANQ--MGIQLFETSAKDNINV 132 (177)
Q Consensus 87 ~~~-~ilvgnK~Dl~~~~~-v~--~~~~~~-~a~~--~~~~~~e~Sak~~~~v 132 (177)
+.| +++|.||+|+..... .. .++... +..+ .+.+++.+||++.-.+
T Consensus 132 g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 132 GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRY 184 (225)
T ss_pred CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence 456 456999999853221 10 111111 2222 2367999999988443
No 396
>KOG4271|consensus
Probab=58.22 E-value=11 Score=34.84 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=25.5
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVLR 29 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~ 29 (177)
+++-.|||+..+.||+-+|-+|++.+.+
T Consensus 3 ~l~~vetss~~nvnve~~f~tl~~l~~k 30 (1100)
T KOG4271|consen 3 NLPVVETSSVKNVNVEYLFGTLVQLCDK 30 (1100)
T ss_pred CCCceeecccccccHHHHHHHHHHHHHh
Confidence 5678999999999999999999998865
No 397
>PF07764 Omega_Repress: Omega Transcriptional Repressor; InterPro: IPR011686 The omega transcriptional repressor regulates expression of genes involved in copy number control and stable maintenance of plasmids. The omega protein belongs to the structural superfamily of MetJ/Arc repressors featuring a ribbon-helix-helix DNA-binding motif with the beta-ribbon located in and recognising the major groove of operator DNA [].; PDB: 2BNW_D 1IRQ_A 2CAX_B 2BNZ_A.
Probab=57.68 E-value=8.9 Score=23.07 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=16.5
Q ss_pred ccCCCCCHHHHHHHHHHHHHH
Q psy1416 9 SAKDNINVEEMFMAITNLVLR 29 (177)
Q Consensus 9 SAk~~~nV~~~F~~l~~~i~~ 29 (177)
|||+|-||.|+++.-.+.-++
T Consensus 44 tAknGgNvKEvme~~lr~~l~ 64 (71)
T PF07764_consen 44 TAKNGGNVKEVMEQALREKLK 64 (71)
T ss_dssp HHHSSS-HHHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 799999999999887776554
No 398
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=57.61 E-value=16 Score=32.33 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=21.3
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416 119 IQLFETSAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 119 ~~~~e~Sak~~~~v~~~f~~~~~~~ 143 (177)
.+++.+||++|+|++++...+....
T Consensus 191 v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 191 VAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred ceEEEeecCCCCChhHHHHHHHHHH
Confidence 6899999999999999998776443
No 399
>KOG2485|consensus
Probab=56.46 E-value=18 Score=29.41 Aligned_cols=55 Identities=22% Similarity=0.078 Sum_probs=31.0
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecC--CCCCCHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSA--KDNINVEEMFMAITNL 142 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa--k~~~~v~~~f~~~~~~ 142 (177)
..|-|||-||+||.+... ...-.+.++.+..-.|+..+. .....|..+|..+-..
T Consensus 73 ~k~riiVlNK~DLad~~~-~k~~iq~~~~~~~~~~~~~~c~~~~~~~v~~l~~il~~~ 129 (335)
T KOG2485|consen 73 PKPRIIVLNKMDLADPKE-QKKIIQYLEWQNLESYIKLDCNKDCNKQVSPLLKILTIL 129 (335)
T ss_pred CCceEEEEecccccCchh-hhHHHHHHHhhcccchhhhhhhhhhhhccccHHHHHHHH
Confidence 567899999999987422 234445555554434443333 3333465555544433
No 400
>KOG0705|consensus
Probab=56.41 E-value=13 Score=32.56 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=25.5
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITNLVLRS 30 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~~i~~~ 30 (177)
+.||||+|-+|.||+..|..++..+...
T Consensus 164 csy~et~atyGlnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 164 CSYYETCATYGLNVERVFQEVAQKIVQL 191 (749)
T ss_pred cceeecchhhhhhHHHHHHHHHHHHHHH
Confidence 6799999999999999999999988754
No 401
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=53.15 E-value=26 Score=31.46 Aligned_cols=15 Identities=20% Similarity=-0.064 Sum_probs=13.4
Q ss_pred CCcEEEEeeCCCCcC
Q psy1416 87 PSGLRLVGNKNDDPQ 101 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~ 101 (177)
++|++||+||+|+..
T Consensus 127 ~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 127 EVPRIAFVNKMDKTG 141 (689)
T ss_pred CCCEEEEEECCCCCC
Confidence 689999999999975
No 402
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=51.44 E-value=48 Score=28.72 Aligned_cols=59 Identities=17% Similarity=0.208 Sum_probs=37.2
Q ss_pred CCCcEEEEeeCCCCcCCCccC-HHHHHHHHHH-------cCCcEEEecCCCCC----------CHHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVL-TEDAQRFANQ-------MGIQLFETSAKDNI----------NVEEMFMAITNLVL 144 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~-~~~~~~~a~~-------~~~~~~e~Sak~~~----------~v~~~f~~~~~~~~ 144 (177)
...+.|+|.||+|-.+.|.-. .++...+.-. +.++.+..||+.|. +..-+|..+++.+.
T Consensus 119 ~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp 195 (603)
T COG1217 119 LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVP 195 (603)
T ss_pred cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence 356789999999988765311 1233333333 44688889998764 35566776666554
No 403
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=51.39 E-value=16 Score=31.30 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=21.9
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
+.+++.+||++|.||+.+...|.+.+
T Consensus 207 ~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 207 NAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 46799999999999998888887644
No 404
>KOG2486|consensus
Probab=50.40 E-value=5.5 Score=31.83 Aligned_cols=56 Identities=16% Similarity=0.110 Sum_probs=34.9
Q ss_pred CCCcEEEEeeCCCCcCC------CccCH-HH-HHHH---HHHcCCcEEEecCCCCCCHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQK------KVVLT-ED-AQRF---ANQMGIQLFETSAKDNINVEEMFMAITN 141 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~------~~v~~-~~-~~~~---a~~~~~~~~e~Sak~~~~v~~~f~~~~~ 141 (177)
.++|+.+|-||||-... +.... .. ...+ .-....+++-+|+.++.|++++...++.
T Consensus 247 ~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 247 NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred cCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence 47999999999997421 11110 00 1111 1112356888999999999988776653
No 405
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=49.69 E-value=21 Score=29.57 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=29.3
Q ss_pred CCCcEEEEeeCCCCcC-CCccCHHHHHHHHHHcCCcEEEecCC
Q psy1416 86 FPSGLRLVGNKNDDPQ-KKVVLTEDAQRFANQMGIQLFETSAK 127 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~Sak 127 (177)
..-|+++|+|+.|..- ...-..++..+++.+.+.+++.+||+
T Consensus 198 t~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~ 240 (364)
T PRK09601 198 TAKPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAK 240 (364)
T ss_pred ccCCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHH
Confidence 3569999999998521 11112456667777788889999986
No 406
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=49.36 E-value=22 Score=28.87 Aligned_cols=35 Identities=23% Similarity=0.173 Sum_probs=24.4
Q ss_pred EEEeeCCCCcCCCccCHHHHHHHHHHcC--CcEEEecCC
Q psy1416 91 RLVGNKNDDPQKKVVLTEDAQRFANQMG--IQLFETSAK 127 (177)
Q Consensus 91 ilvgnK~Dl~~~~~v~~~~~~~~a~~~~--~~~~e~Sak 127 (177)
+||.||+||.+... .+..+...++.+ ++.+++|..
T Consensus 149 ~ivlNK~Dlv~~~~--l~~l~~~l~~lnp~A~i~~~~~~ 185 (323)
T COG0523 149 VIVLNKTDLVDAEE--LEALEARLRKLNPRARIIETSYG 185 (323)
T ss_pred EEEEecccCCCHHH--HHHHHHHHHHhCCCCeEEEcccc
Confidence 88999999986542 344455556654 678888874
No 407
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=49.34 E-value=35 Score=25.71 Aligned_cols=34 Identities=12% Similarity=0.151 Sum_probs=30.5
Q ss_pred HHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q psy1416 107 TEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140 (177)
Q Consensus 107 ~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~ 140 (177)
..+-.+|+++++++|+-+|+=+..=|+-+|+.++
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~fI~~lfe~iv 111 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIV 111 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhc
Confidence 5678899999999999999999888888888877
No 408
>KOG1486|consensus
Probab=49.29 E-value=48 Score=26.37 Aligned_cols=50 Identities=24% Similarity=0.194 Sum_probs=40.1
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~ 143 (177)
-++++-|-||+|- |+.++...+|++.+. +-+|....-|++.+.+.+...+
T Consensus 238 Y~~ClYvYnKID~-----vs~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe~l 287 (364)
T KOG1486|consen 238 YIKCLYVYNKIDQ-----VSIEEVDRLARQPNS--VVISCNMKLNLDRLLERIWEEL 287 (364)
T ss_pred EEEEEEEeeccce-----ecHHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHHHh
Confidence 4688999999994 678888899988764 4567778889998888888765
No 409
>KOG0463|consensus
Probab=48.60 E-value=46 Score=28.04 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=14.6
Q ss_pred CcEEEecCCCCCCHHHH
Q psy1416 119 IQLFETSAKDNINVEEM 135 (177)
Q Consensus 119 ~~~~e~Sak~~~~v~~~ 135 (177)
++.|.+|..+|.|++.+
T Consensus 333 CPIFQvSNVtG~NL~LL 349 (641)
T KOG0463|consen 333 CPIFQVSNVTGTNLPLL 349 (641)
T ss_pred cceEEeccccCCChHHH
Confidence 58999999999998744
No 410
>PRK14845 translation initiation factor IF-2; Provisional
Probab=47.58 E-value=20 Score=33.95 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=19.8
Q ss_pred CcEEEeccCCCCCHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITN 25 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~ 25 (177)
++++.+||++|.||++....|..
T Consensus 648 v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 648 VAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999876653
No 411
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=47.32 E-value=21 Score=24.18 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=17.4
Q ss_pred EeeCCCCcCCCccCHHHHHHHHHHcC-CcEEEecCC
Q psy1416 93 VGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAK 127 (177)
Q Consensus 93 vgnK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sak 127 (177)
++||+|+.. ..+-...+.+++. ..++-+||.
T Consensus 1 AaNK~D~~~----a~~ni~kl~~~~~~~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPA----ADENIEKLKEKYPDEPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S-----HHHHHHHHHHHTT-EEEEE-HH
T ss_pred CCccccccc----cHhHHHHHHHhCCCCceeeccHH
Confidence 689999853 3345555555554 578888886
No 412
>KOG1249|consensus
Probab=46.10 E-value=30 Score=30.20 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=19.0
Q ss_pred EEEecCCCCCCHHHHHHHHHHHH
Q psy1416 121 LFETSAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 121 ~~e~Sak~~~~v~~~f~~~~~~~ 143 (177)
...+||++|++++++...++...
T Consensus 188 ~~~~r~ktgyg~eeLI~~lvd~~ 210 (572)
T KOG1249|consen 188 VDLIRAKTGYGIEELIVMLVDIV 210 (572)
T ss_pred hhhhhhhhcccHHHHHHHhhhee
Confidence 35789999999999988887654
No 413
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=45.97 E-value=20 Score=29.64 Aligned_cols=58 Identities=22% Similarity=0.216 Sum_probs=38.2
Q ss_pred CCCcEEEEeeCCCCcC------C----------Cc--cCHHHHHHHHHHc--------C----CcEEEecCCCCCCHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQ------K----------KV--VLTEDAQRFANQM--------G----IQLFETSAKDNINVEEM 135 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~------~----------~~--v~~~~~~~~a~~~--------~----~~~~e~Sak~~~~v~~~ 135 (177)
.++|++|+-||.|+-. . .. -..+.+..|.... . +.+..|+|.+..+|..+
T Consensus 302 ~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v 381 (389)
T PF00503_consen 302 KNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKV 381 (389)
T ss_dssp TTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHH
T ss_pred ccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHH
Confidence 4789999999999721 1 00 1345566655442 1 13558999999999999
Q ss_pred HHHHHHHH
Q psy1416 136 FMAITNLV 143 (177)
Q Consensus 136 f~~~~~~~ 143 (177)
|..+.+.|
T Consensus 382 ~~~v~~~i 389 (389)
T PF00503_consen 382 FNAVKDII 389 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHhcCcC
Confidence 98887643
No 414
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=45.79 E-value=11 Score=31.68 Aligned_cols=19 Identities=26% Similarity=0.128 Sum_probs=16.8
Q ss_pred CcEEEeccCCCCCHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFM 21 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~ 21 (177)
++|+++||++|.||++.+.
T Consensus 180 ~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 180 IPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred ceEEEeecccCCCcccccc
Confidence 5799999999999998764
No 415
>PRK04004 translation initiation factor IF-2; Validated
Probab=45.52 E-value=25 Score=31.07 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=20.1
Q ss_pred CcEEEeccCCCCCHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITN 25 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~ 25 (177)
++|+.+||++|.|++++...+..
T Consensus 193 v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 193 VAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred ceEeeccCCCCCChHHHHHHHHH
Confidence 67999999999999998877754
No 416
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=44.46 E-value=18 Score=28.06 Aligned_cols=15 Identities=20% Similarity=-0.257 Sum_probs=11.6
Q ss_pred CCcEEEEeeCCCCcC
Q psy1416 87 PSGLRLVGNKNDDPQ 101 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~ 101 (177)
..++++|.||+|+..
T Consensus 192 ~~rti~ViTK~D~~~ 206 (240)
T smart00053 192 GERTIGVITKLDLMD 206 (240)
T ss_pred CCcEEEEEECCCCCC
Confidence 467888888888764
No 417
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=43.89 E-value=23 Score=32.36 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=22.7
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNL 26 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~ 26 (177)
+|++++++||++|.||+++...+.+.
T Consensus 141 LG~pVvpiSA~~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 141 LGCPVIPLVSTRGRGIEALKLAIDRH 166 (772)
T ss_pred hCCCEEEEEeecCCCHHHHHHHHHHh
Confidence 37899999999999999998887764
No 418
>KOG0085|consensus
Probab=43.62 E-value=71 Score=25.10 Aligned_cols=62 Identities=27% Similarity=0.259 Sum_probs=42.7
Q ss_pred CCCcEEEEeeCCCCcCCC----------------ccCHHHHHHHHHHc----C------CcEEEecCCCCCCHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKK----------------VVLTEDAQRFANQM----G------IQLFETSAKDNINVEEMFMAI 139 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~----------------~v~~~~~~~~a~~~----~------~~~~e~Sak~~~~v~~~f~~~ 139 (177)
.+.++||..||.||..+. .-..+.+++|.-.. + +.-..|.|.+-.||.-+|..+
T Consensus 265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaV 344 (359)
T KOG0085|consen 265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAV 344 (359)
T ss_pred cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHH
Confidence 467899999999985332 22334455554442 1 123468899999999999999
Q ss_pred HHHHHHHH
Q psy1416 140 TNLVLRSK 147 (177)
Q Consensus 140 ~~~~~~~~ 147 (177)
-..+++..
T Consensus 345 kDtiLq~~ 352 (359)
T KOG0085|consen 345 KDTILQLN 352 (359)
T ss_pred HHHHHHhh
Confidence 88888754
No 419
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=42.50 E-value=1.4e+02 Score=22.13 Aligned_cols=77 Identities=9% Similarity=0.124 Sum_probs=47.7
Q ss_pred cccchhhhhcccc----hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q psy1416 61 CTVLNECAWLGCG----WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136 (177)
Q Consensus 61 ~dit~~~Sf~~~~----w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f 136 (177)
-|+++..|+..+. |++. .+- . +- +.++++-..-.+.-.|+..+..++|..+..+++.+--.+. +-+
T Consensus 72 inl~sk~SL~~ve~SL~~vd~---~ff-l-GK-VCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~----~~~ 141 (176)
T PF11111_consen 72 INLHSKYSLQSVEASLSHVDP---SFF-L-GK-VCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENE----EGR 141 (176)
T ss_pred EecCCcccHHHHHHHHhhCCh---hhh-c-cc-eEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccc----hHH
Confidence 5666777777663 4421 111 1 12 3444555544555678999999999999999886554444 445
Q ss_pred HHHHHHHHHHH
Q psy1416 137 MAITNLVLRSK 147 (177)
Q Consensus 137 ~~~~~~~~~~~ 147 (177)
..+++++++..
T Consensus 142 ~~lAqRLL~~l 152 (176)
T PF11111_consen 142 TSLAQRLLRML 152 (176)
T ss_pred HHHHHHHHHHH
Confidence 56666666554
No 420
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=41.23 E-value=18 Score=31.44 Aligned_cols=15 Identities=20% Similarity=0.000 Sum_probs=0.0
Q ss_pred CCcEEEEeeCCCCcC
Q psy1416 87 PSGLRLVGNKNDDPQ 101 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~ 101 (177)
++|+++++||+|+..
T Consensus 132 ~~PiivviNKiD~~~ 146 (527)
T TIGR00503 132 DTPIFTFMNKLDRDI 146 (527)
T ss_pred CCCEEEEEECccccC
No 421
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=40.60 E-value=72 Score=22.85 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=23.9
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEE
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLF 122 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~ 122 (177)
+.|+.+|.||+|.... ...+..++.++++++++
T Consensus 143 ~~~~~vV~N~~~~~~~---~~~~~~~~~~~~~~~vl 175 (179)
T cd03110 143 GIPVGVVINKYDLNDE---IAEEIEDYCEEEGIPIL 175 (179)
T ss_pred CCCEEEEEeCCCCCcc---hHHHHHHHHHHcCCCeE
Confidence 4568899999997532 24567778888887765
No 422
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=38.79 E-value=50 Score=26.89 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=27.2
Q ss_pred cEEEEeeCCCCcCCCccC---HHHHHHHHHHcCC-----cEEEecCCC
Q psy1416 89 GLRLVGNKNDDPQKKVVL---TEDAQRFANQMGI-----QLFETSAKD 128 (177)
Q Consensus 89 ~~ilvgnK~Dl~~~~~v~---~~~~~~~a~~~~~-----~~~e~Sak~ 128 (177)
-++++.||+|+.+++..- .-+.+++..++++ +.+.-||+-
T Consensus 130 ~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 130 YIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALK 177 (394)
T ss_pred EEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhh
Confidence 468889999998754322 3356677777764 577777753
No 423
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=38.09 E-value=28 Score=30.85 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=22.8
Q ss_pred CCcEEEeccCCCC----------CHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNI----------NVEEMFMAITNLVL 28 (177)
Q Consensus 2 ~~~f~EtSAk~~~----------nV~~~F~~l~~~i~ 28 (177)
.++++.+||++|. ||+.+|..+++.+.
T Consensus 155 ~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 155 DFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred cCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 4689999999996 79999998888664
No 424
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=37.75 E-value=41 Score=27.29 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.6
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNL 26 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~ 26 (177)
|..+-+.|||-.|.+|++++..+.+.
T Consensus 227 W~ppv~~t~A~~g~Gi~~L~~ai~~h 252 (323)
T COG1703 227 WRPPVVTTSALEGEGIDELWDAIEDH 252 (323)
T ss_pred CCCceeEeeeccCCCHHHHHHHHHHH
Confidence 34678999999999999999988774
No 425
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=37.69 E-value=57 Score=22.90 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=21.0
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416 4 QLFETSAKDNINVEEMFMAITNLVL 28 (177)
Q Consensus 4 ~f~EtSAk~~~nV~~~F~~l~~~i~ 28 (177)
..+-+||++|.++++.+..+.+...
T Consensus 61 ~ii~vSa~~~~gi~~L~~~i~~~~~ 85 (155)
T cd01849 61 IPFKISATNGQGIEKKESAFTKQTN 85 (155)
T ss_pred eEEEEeccCCcChhhHHHHHHHHhH
Confidence 4678999999999999998877643
No 426
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=37.43 E-value=39 Score=26.70 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=20.8
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITNL 26 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~~ 26 (177)
.+-+.|||.++.+|++++..|-+.
T Consensus 205 ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 205 PPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp -EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHH
Confidence 468999999999999999888774
No 427
>PRK00007 elongation factor G; Reviewed
Probab=35.67 E-value=67 Score=29.00 Aligned_cols=16 Identities=19% Similarity=-0.087 Sum_probs=13.6
Q ss_pred CCcEEEEeeCCCCcCC
Q psy1416 87 PSGLRLVGNKNDDPQK 102 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~ 102 (177)
+.|++++.||+|+...
T Consensus 127 ~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 127 KVPRIAFVNKMDRTGA 142 (693)
T ss_pred CCCEEEEEECCCCCCC
Confidence 5789999999999753
No 428
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=35.52 E-value=40 Score=26.21 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=21.5
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416 119 IQLFETSAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 119 ~~~~e~Sak~~~~v~~~f~~~~~~~ 143 (177)
.+.|..||+++.||+.++..+...+
T Consensus 241 ~pv~~gSa~~~~G~~~ll~~~~~~~ 265 (268)
T cd04170 241 VPVLCGSALTNIGVRELLDALVHLL 265 (268)
T ss_pred EEEEEeeCCCCcCHHHHHHHHHHhC
Confidence 5789999999999999998887654
No 429
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=34.83 E-value=76 Score=22.05 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=40.2
Q ss_pred cEEEEeeCCCCcCCCc------cCHHHHHHHHHHcCC-----cEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416 89 GLRLVGNKNDDPQKKV------VLTEDAQRFANQMGI-----QLFETSAKDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 89 ~~ilvgnK~Dl~~~~~------v~~~~~~~~a~~~~~-----~~~e~Sak~~~~v~~~f~~~~~~~~~~ 146 (177)
-++|+|-|.+--.... -..+-.+++..+.|+ .++.+||-.++.+.+.+...+..+.+.
T Consensus 56 GV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~l 124 (132)
T COG1908 56 GVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEPERVRVLWISAAEGEKFAETINEFVERIKEL 124 (132)
T ss_pred eEEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHHHHHHHHh
Confidence 3789999987422110 012345566677764 689999999999988888888877654
No 430
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=34.69 E-value=61 Score=24.07 Aligned_cols=43 Identities=33% Similarity=0.411 Sum_probs=33.0
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVE 133 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~ 133 (177)
..|.++|+.|-| ..++.+.++.+++.+|..++.+-.--..|.+
T Consensus 117 pfps~vvaSrnD----p~~~~~~a~~~a~~wgs~lv~~g~~GHiN~~ 159 (181)
T COG3545 117 PFPSVVVASRND----PYVSYEHAEDLANAWGSALVDVGEGGHINAE 159 (181)
T ss_pred CCceeEEEecCC----CCCCHHHHHHHHHhccHhheecccccccchh
Confidence 467899999988 4688999999999999887766544334443
No 431
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=31.78 E-value=35 Score=27.04 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=26.6
Q ss_pred CCcEEEEeeCCC--CcCCCccCHHHHHHHHHHcCCcEEEecCC
Q psy1416 87 PSGLRLVGNKND--DPQKKVVLTEDAQRFANQMGIQLFETSAK 127 (177)
Q Consensus 87 ~~~~ilvgnK~D--l~~~~~v~~~~~~~~a~~~~~~~~e~Sak 127 (177)
.-|+++|+|+.| +..... .......++...+..++.+||+
T Consensus 195 ~KP~i~v~N~~e~d~~~~~~-~~~~~~~~~~~~~~~~i~~sa~ 236 (274)
T cd01900 195 AKPVLYVANVSEDDLANGNN-KVLKVREIAAKEGAEVIPISAK 236 (274)
T ss_pred cCCceeecccCHHHhccccH-HHHHHHHHHhcCCCeEEEeeHH
Confidence 358999999998 432111 1234445666678889999996
No 432
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=31.45 E-value=74 Score=22.75 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.4
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 4 QLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 4 ~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
..+.+||+++.|++++...|...+
T Consensus 77 ~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 77 KVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred eEEEEECCCcccHHHHHHHHHHHH
Confidence 357899999999999888887765
No 433
>PHA02436 hypothetical protein
Probab=30.72 E-value=50 Score=18.55 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy1416 13 NINVEEMFMAITNLVLR 29 (177)
Q Consensus 13 ~~nV~~~F~~l~~~i~~ 29 (177)
.-+|+++|..+-+.++.
T Consensus 17 eRkIEEVFeE~YE~~YG 33 (52)
T PHA02436 17 ERNIEEVFKEAYESFYG 33 (52)
T ss_pred hhhHHHHHHHHHHHhcC
Confidence 35799999999998864
No 434
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=28.85 E-value=2.3e+02 Score=20.68 Aligned_cols=60 Identities=17% Similarity=0.240 Sum_probs=39.5
Q ss_pred hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 74 WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 74 w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
|++++..... .--++||-|-.=..+ ....+++..+.+..+++++.-++|--.+.+++...
T Consensus 67 ~~~~l~~~~~---~~~v~IvSNsaGs~~--d~~~~~a~~~~~~lgIpvl~h~~kKP~~~~~i~~~ 126 (168)
T PF09419_consen 67 WLNELKKQFG---KDRVLIVSNSAGSSD--DPDGERAEALEKALGIPVLRHRAKKPGCFREILKY 126 (168)
T ss_pred HHHHHHHHCC---CCeEEEEECCCCccc--CccHHHHHHHHHhhCCcEEEeCCCCCccHHHHHHH
Confidence 7776642221 114888898763332 23568899999999999998888666555544433
No 435
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=28.83 E-value=81 Score=22.91 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=19.5
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITN 25 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~ 25 (177)
.|...+.+|++++.++++.-..+..
T Consensus 11 ~gy~v~~~S~~~~~g~~~l~~~l~~ 35 (161)
T PF03193_consen 11 LGYPVFFISAKTGEGIEELKELLKG 35 (161)
T ss_dssp TTSEEEE-BTTTTTTHHHHHHHHTT
T ss_pred cCCcEEEEeCCCCcCHHHHHHHhcC
Confidence 3678899999999999988766554
No 436
>PLN00043 elongation factor 1-alpha; Provisional
Probab=28.45 E-value=27 Score=29.70 Aligned_cols=16 Identities=25% Similarity=0.206 Sum_probs=14.4
Q ss_pred CcEEEeccCCCCCHHH
Q psy1416 3 IQLFETSAKDNINVEE 18 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~ 18 (177)
++|+++||++|.||.+
T Consensus 188 ~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 188 IPFVPISGFEGDNMIE 203 (447)
T ss_pred ceEEEEeccccccccc
Confidence 6799999999999964
No 437
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=27.66 E-value=2.4e+02 Score=20.50 Aligned_cols=58 Identities=14% Similarity=0.218 Sum_probs=33.2
Q ss_pred CcEEEEeeCCCCcCCCccC------HHHHHHHHHHcCCcEEEec-----CCCCCCHHHHHHHHHHHHHH
Q psy1416 88 SGLRLVGNKNDDPQKKVVL------TEDAQRFANQMGIQLFETS-----AKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 88 ~~~ilvgnK~Dl~~~~~v~------~~~~~~~a~~~~~~~~e~S-----ak~~~~v~~~f~~~~~~~~~ 145 (177)
.++++|-++.|......+. ......+.+..+..|+..+ +..+.+|++++..+.+.+.+
T Consensus 117 ~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 117 DHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred hcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 3678888888854322111 1334445555565665544 45567788777777666554
No 438
>KOG3929|consensus
Probab=27.24 E-value=39 Score=26.95 Aligned_cols=14 Identities=36% Similarity=0.437 Sum_probs=12.3
Q ss_pred CCcEEEEeeCCCCc
Q psy1416 87 PSGLRLVGNKNDDP 100 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~ 100 (177)
++|+++||.|.|.-
T Consensus 190 P~PV~IVgsKYDvF 203 (363)
T KOG3929|consen 190 PVPVVIVGSKYDVF 203 (363)
T ss_pred CCceEEeccchhhh
Confidence 58999999999963
No 439
>KOG2423|consensus
Probab=25.95 E-value=1.4e+02 Score=25.44 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=31.8
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~ 145 (177)
.-.+|+|.||+||..- -|+..=...+.+++-..-|..|--..+| .-.+..+++++-.
T Consensus 244 hKHli~vLNKvDLVPt-wvt~~Wv~~lSkeyPTiAfHAsi~nsfG-KgalI~llRQf~k 300 (572)
T KOG2423|consen 244 HKHLIYVLNKVDLVPT-WVTAKWVRHLSKEYPTIAFHASINNSFG-KGALIQLLRQFAK 300 (572)
T ss_pred cceeEEEeeccccccH-HHHHHHHHHHhhhCcceeeehhhcCccc-hhHHHHHHHHHHh
Confidence 3458999999999632 1233333334445544456666544455 3355566655543
No 440
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=24.30 E-value=1.2e+02 Score=19.08 Aligned_cols=30 Identities=30% Similarity=0.420 Sum_probs=23.6
Q ss_pred CccCHHHHHHHHHHcCCcEEEecCCCCCCH
Q psy1416 103 KVVLTEDAQRFANQMGIQLFETSAKDNINV 132 (177)
Q Consensus 103 ~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v 132 (177)
..++..+|...|++.+...+++|....--|
T Consensus 26 Gv~~~~eAl~~A~~~~lDLV~v~~~~~PPV 55 (76)
T PF05198_consen 26 GVMSLREALRLAKEKGLDLVEVSPNADPPV 55 (76)
T ss_dssp EEEEHHHHHHHHHHTT-EEEEEETTSSS-E
T ss_pred ceEEHHHHHHHHHHcCCcEEEEcCCCCCCe
Confidence 368899999999999999999996655444
No 441
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=23.52 E-value=97 Score=26.71 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=25.1
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNLVLR 29 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~ 29 (177)
||+.+|-||+|+..|++-++..|.-+++.
T Consensus 237 yGAsL~yts~~~~~n~~~L~~yi~h~l~~ 265 (472)
T PF05783_consen 237 YGASLIYTSVKEEKNLDLLYKYILHRLYG 265 (472)
T ss_pred cCCeEEEeeccccccHHHHHHHHHHHhcc
Confidence 67888889999999999999888777764
No 442
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=23.22 E-value=64 Score=22.10 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=27.3
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecC
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSA 126 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa 126 (177)
.-|++|+|.-.... -..++..++++..+++++.+-.
T Consensus 12 ~rP~il~G~g~~~~----~a~~~l~~lae~~~~Pv~~t~~ 47 (137)
T PF00205_consen 12 KRPVILAGRGARRS----GAAEELRELAEKLGIPVATTPM 47 (137)
T ss_dssp SSEEEEE-HHHHHT----TCHHHHHHHHHHHTSEEEEEGG
T ss_pred CCEEEEEcCCcChh----hHHHHHHHHHHHHCCCEEecCc
Confidence 56899999876532 3468999999999999987654
No 443
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=22.27 E-value=2.2e+02 Score=24.94 Aligned_cols=57 Identities=14% Similarity=0.080 Sum_probs=40.2
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEec--CCCCCCHHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETS--AKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~S--ak~~~~v~~~f~~~~~~~~ 144 (177)
-.+|+|+..|+..-..+. ..+..++++.+.|+.+..+. ++-|.|-.++-..+++.+-
T Consensus 355 fg~p~VVaiN~F~~Dt~~--Ei~~v~~~~~~~g~~~~~~~~~~~GG~Ga~eLA~~Vi~a~e 413 (524)
T cd00477 355 FGVPVVVAINKFSTDTDA--ELALVRKLAEEAGAFVAVSEHWAEGGKGAVELAEAVIEACE 413 (524)
T ss_pred cCCCeEEEecCCCCCCHH--HHHHHHHHHHHcCCCEEEehhhhhhhhhHHHHHHHHHHHhc
Confidence 378999999998754332 34566788899998776654 3667887777777765443
No 444
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=22.14 E-value=2.8e+02 Score=19.22 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=32.0
Q ss_pred ccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416 104 VVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 104 ~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~ 145 (177)
.++.++..+-+.+.+..++-.|+..+...+. +..+++.+.+
T Consensus 39 ~~s~e~~v~aa~e~~adii~iSsl~~~~~~~-~~~~~~~L~~ 79 (132)
T TIGR00640 39 FQTPEEIARQAVEADVHVVGVSSLAGGHLTL-VPALRKELDK 79 (132)
T ss_pred CCCHHHHHHHHHHcCCCEEEEcCchhhhHHH-HHHHHHHHHh
Confidence 3678888889999999999999998776654 6666666644
No 445
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=21.68 E-value=93 Score=27.96 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.7
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITN 25 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~ 25 (177)
.|+|-..|||+.|.++++.-..+.+
T Consensus 137 LGvPVv~tvA~~g~G~~~l~~~i~~ 161 (653)
T COG0370 137 LGVPVVPTVAKRGEGLEELKRAIIE 161 (653)
T ss_pred hCCCEEEEEeecCCCHHHHHHHHHH
Confidence 4789999999999999988777765
No 446
>COG1162 Predicted GTPases [General function prediction only]
Probab=21.19 E-value=61 Score=26.14 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.4
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
+|.+.+.+||+++.+++++...|...+
T Consensus 140 ~gy~v~~~s~~~~~~~~~l~~~l~~~~ 166 (301)
T COG1162 140 IGYPVLFVSAKNGDGLEELAELLAGKI 166 (301)
T ss_pred CCeeEEEecCcCcccHHHHHHHhcCCe
Confidence 367789999999999999998888765
No 447
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=21.13 E-value=1e+02 Score=20.59 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHcCCcEEEecCC
Q psy1416 106 LTEDAQRFANQMGIQLFETSAK 127 (177)
Q Consensus 106 ~~~~~~~~a~~~~~~~~e~Sak 127 (177)
+.++|..||+++|+.|.-.-.+
T Consensus 57 skE~Ai~yaer~G~~Y~V~~p~ 78 (101)
T PF04800_consen 57 SKEDAIAYAERNGWDYEVEEPK 78 (101)
T ss_dssp SHHHHHHHHHHCT-EEEEE-ST
T ss_pred CHHHHHHHHHHcCCeEEEeCCC
Confidence 6799999999999998755444
No 448
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=20.62 E-value=1.8e+02 Score=23.50 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=29.4
Q ss_pred cEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q psy1416 89 GLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136 (177)
Q Consensus 89 ~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f 136 (177)
+--+|.||.|-... .-.+...+...+.++..++ +|++++++-
T Consensus 261 ~~giIlTKlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 261 LTGIILTKLDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCEEEEECCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 34688999995432 2355566677788887777 888887763
No 449
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=20.52 E-value=2.6e+02 Score=20.32 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=26.1
Q ss_pred cEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEE--EecCC
Q psy1416 89 GLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLF--ETSAK 127 (177)
Q Consensus 89 ~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~--e~Sak 127 (177)
.-|+.|.|+|++ +-+++....++++++|- -+||-
T Consensus 5 V~IIMGS~SD~~-----~mk~Aa~~L~~fgi~ye~~VvSAH 40 (162)
T COG0041 5 VGIIMGSKSDWD-----TMKKAAEILEEFGVPYEVRVVSAH 40 (162)
T ss_pred EEEEecCcchHH-----HHHHHHHHHHHcCCCeEEEEEecc
Confidence 468999999985 34677788888998764 57774
Done!