Query psy1416
Match_columns 177
No_of_seqs 354 out of 2874
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 20:59:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1416.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1416hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.9 3.2E-24 1.1E-28 162.4 6.9 86 60-147 92-178 (216)
2 2bcg_Y Protein YP2, GTP-bindin 99.7 2.9E-17 1E-21 122.0 10.3 90 60-151 87-177 (206)
3 2g3y_A GTP-binding protein GEM 99.7 1.5E-17 5E-22 125.3 7.7 86 60-146 118-204 (211)
4 2bov_A RAla, RAS-related prote 99.7 3E-17 1E-21 121.5 9.0 87 60-147 92-179 (206)
5 3cbq_A GTP-binding protein REM 99.7 1E-16 3.6E-21 118.7 8.2 86 60-146 103-189 (195)
6 2cjw_A GTP-binding protein GEM 99.7 1.7E-16 5.8E-21 117.2 8.6 87 60-147 87-174 (192)
7 3q85_A GTP-binding protein REM 99.7 2.2E-16 7.4E-21 113.2 8.0 86 60-146 82-168 (169)
8 3cpj_B GTP-binding protein YPT 99.7 8.2E-17 2.8E-21 121.4 5.7 88 60-149 92-180 (223)
9 3ihw_A Centg3; RAS, centaurin, 99.7 2.9E-16 1E-20 115.2 8.3 87 60-147 92-182 (184)
10 2iwr_A Centaurin gamma 1; ANK 99.7 4.6E-16 1.6E-20 112.7 9.3 90 60-149 79-173 (178)
11 2nzj_A GTP-binding protein REM 99.6 3.6E-16 1.2E-20 112.6 8.2 87 60-147 84-171 (175)
12 1vg8_A RAS-related protein RAB 99.6 6.7E-16 2.3E-20 114.4 9.7 116 60-177 87-207 (207)
13 3q72_A GTP-binding protein RAD 99.6 3.3E-16 1.1E-20 112.0 7.6 86 60-146 79-165 (166)
14 2fu5_C RAS-related protein RAB 99.6 6.3E-16 2.1E-20 112.4 9.0 88 60-149 87-175 (183)
15 3dz8_A RAS-related protein RAB 99.6 5.5E-16 1.9E-20 113.9 8.0 86 60-147 102-188 (191)
16 3tkl_A RAS-related protein RAB 99.6 1.2E-15 4.1E-20 112.0 9.2 88 60-149 95-183 (196)
17 3kkq_A RAS-related protein M-R 99.6 1.1E-15 3.6E-20 111.2 8.8 85 60-145 96-182 (183)
18 2hup_A RAS-related protein RAB 99.6 1.3E-15 4.6E-20 113.0 8.4 86 60-147 108-195 (201)
19 2a5j_A RAS-related protein RAB 99.6 1.8E-15 6.1E-20 111.1 8.8 86 60-147 100-186 (191)
20 2ew1_A RAS-related protein RAB 99.6 1.3E-15 4.6E-20 113.4 7.7 86 60-147 105-191 (201)
21 4dsu_A GTPase KRAS, isoform 2B 99.6 4.5E-15 1.6E-19 108.0 10.3 88 60-149 82-170 (189)
22 3c5c_A RAS-like protein 12; GD 99.6 4.9E-16 1.7E-20 114.1 5.1 85 60-144 98-185 (187)
23 2gf0_A GTP-binding protein DI- 99.6 7E-16 2.4E-20 113.5 5.5 86 60-146 86-172 (199)
24 3t5g_A GTP-binding protein RHE 99.6 1E-15 3.4E-20 111.1 5.6 87 60-147 84-171 (181)
25 2atv_A RERG, RAS-like estrogen 99.6 2.8E-15 9.4E-20 110.5 7.8 87 60-147 105-193 (196)
26 2o52_A RAS-related protein RAB 99.6 3.6E-15 1.2E-19 110.5 8.1 86 60-147 104-190 (200)
27 1z0f_A RAB14, member RAS oncog 99.6 3.3E-15 1.1E-19 107.8 7.5 84 60-145 94-178 (179)
28 2gf9_A RAS-related protein RAB 99.6 3.9E-15 1.3E-19 109.0 8.0 85 60-146 101-186 (189)
29 2bme_A RAB4A, RAS-related prot 99.6 3.7E-15 1.3E-19 108.5 7.8 86 60-147 89-175 (186)
30 1zbd_A Rabphilin-3A; G protein 99.6 6.2E-15 2.1E-19 109.0 8.4 88 60-149 87-175 (203)
31 2hxs_A RAB-26, RAS-related pro 99.6 2.4E-15 8.4E-20 108.6 6.0 86 60-145 86-173 (178)
32 3q3j_B RHO-related GTP-binding 99.6 2.2E-15 7.5E-20 113.0 5.9 85 60-147 105-205 (214)
33 3tw8_B RAS-related protein RAB 99.6 7.4E-15 2.5E-19 106.0 8.5 87 60-149 88-175 (181)
34 1z08_A RAS-related protein RAB 99.6 2.5E-15 8.4E-20 107.7 5.9 83 60-144 85-168 (170)
35 1u8z_A RAS-related protein RAL 99.6 3.6E-15 1.2E-19 106.2 6.6 85 60-145 82-167 (168)
36 3oes_A GTPase rhebl1; small GT 99.6 2.1E-15 7.2E-20 111.7 5.6 87 60-147 102-189 (201)
37 2fn4_A P23, RAS-related protei 99.6 4.5E-15 1.5E-19 107.2 7.0 87 60-147 87-174 (181)
38 2g6b_A RAS-related protein RAB 99.6 8.1E-15 2.8E-19 106.0 8.3 85 60-146 90-175 (180)
39 2a9k_A RAS-related protein RAL 99.6 6.6E-15 2.3E-19 106.8 7.6 87 60-147 96-183 (187)
40 1c1y_A RAS-related protein RAP 99.6 8.8E-15 3E-19 104.3 7.9 83 60-143 81-165 (167)
41 3bc1_A RAS-related protein RAB 99.6 1.2E-14 4.1E-19 106.0 8.8 88 60-148 100-188 (195)
42 2f7s_A C25KG, RAS-related prot 99.6 1.3E-14 4.3E-19 108.5 9.1 88 60-148 114-202 (217)
43 1g16_A RAS-related protein SEC 99.6 1.1E-14 3.8E-19 104.1 8.3 84 60-146 82-166 (170)
44 2oil_A CATX-8, RAS-related pro 99.6 1E-14 3.6E-19 107.0 8.3 86 60-147 104-190 (193)
45 1r2q_A RAS-related protein RAB 99.6 4.7E-15 1.6E-19 105.9 6.0 82 60-143 85-167 (170)
46 2il1_A RAB12; G-protein, GDP, 99.5 7.1E-15 2.4E-19 108.2 6.9 85 60-146 105-191 (192)
47 2yc2_C IFT27, small RAB-relate 99.5 1.1E-14 3.6E-19 107.7 7.9 90 60-149 103-196 (208)
48 2efe_B Small GTP-binding prote 99.5 6.8E-15 2.3E-19 106.5 6.6 85 60-146 91-176 (181)
49 1z0j_A RAB-22, RAS-related pro 99.5 1.2E-14 4.1E-19 104.0 7.0 82 60-143 85-167 (170)
50 2p5s_A RAS and EF-hand domain 99.5 7.6E-15 2.6E-19 108.5 6.1 84 60-145 107-197 (199)
51 1kao_A RAP2A; GTP-binding prot 99.5 8.7E-15 3E-19 104.1 5.9 84 60-144 81-165 (167)
52 1z2a_A RAS-related protein RAB 99.5 8.8E-15 3E-19 104.5 5.8 83 60-145 84-167 (168)
53 2fg5_A RAB-22B, RAS-related pr 99.5 6.2E-15 2.1E-19 108.4 4.8 84 60-145 102-186 (192)
54 2atx_A Small GTP binding prote 99.5 3.6E-14 1.2E-18 104.1 8.8 82 60-144 96-192 (194)
55 1z06_A RAS-related protein RAB 99.5 1.5E-14 5.1E-19 105.9 6.7 84 60-144 100-187 (189)
56 2j0v_A RAC-like GTP-binding pr 99.5 4.8E-15 1.7E-19 110.4 3.9 85 60-147 87-182 (212)
57 3t1o_A Gliding protein MGLA; G 99.5 1.9E-14 6.4E-19 105.4 7.0 84 60-148 104-195 (198)
58 3reg_A RHO-like small GTPase; 99.5 1.5E-14 5.1E-19 106.3 6.3 84 60-146 101-189 (194)
59 2erx_A GTP-binding protein DI- 99.5 1.3E-14 4.5E-19 103.8 5.8 84 60-143 81-165 (172)
60 1m7b_A RND3/RHOE small GTP-bin 99.5 8.7E-15 3E-19 106.8 4.4 83 60-145 85-183 (184)
61 2y8e_A RAB-protein 6, GH09086P 99.5 1.2E-14 4.2E-19 104.7 5.0 83 60-144 93-176 (179)
62 1ky3_A GTP-binding protein YPT 99.5 5.4E-14 1.8E-18 101.6 8.4 87 60-146 88-179 (182)
63 1ek0_A Protein (GTP-binding pr 99.5 1.9E-14 6.4E-19 102.8 5.6 82 60-143 82-167 (170)
64 2q3h_A RAS homolog gene family 99.5 4.1E-14 1.4E-18 104.4 7.5 85 60-147 98-197 (201)
65 1x3s_A RAS-related protein RAB 99.5 7E-14 2.4E-18 102.3 8.5 85 60-146 94-179 (195)
66 1gwn_A RHO-related GTP-binding 99.5 1.9E-14 6.6E-19 107.3 5.2 83 60-145 106-204 (205)
67 4djt_A GTP-binding nuclear pro 99.5 2.7E-14 9.1E-19 106.8 5.7 86 60-147 91-177 (218)
68 3cph_A RAS-related protein SEC 99.5 8.8E-14 3E-18 103.3 8.3 85 60-147 99-184 (213)
69 1wms_A RAB-9, RAB9, RAS-relate 99.5 9E-14 3.1E-18 100.2 8.0 85 60-145 86-174 (177)
70 2j1l_A RHO-related GTP-binding 99.5 5.1E-14 1.8E-18 105.4 6.9 84 60-146 112-210 (214)
71 3con_A GTPase NRAS; structural 99.5 1.3E-13 4.5E-18 100.7 8.7 86 60-147 99-185 (190)
72 2ce2_X GTPase HRAS; signaling 99.5 1.2E-13 4E-18 98.0 8.2 83 60-144 81-164 (166)
73 3bwd_D RAC-like GTP-binding pr 99.5 4.4E-14 1.5E-18 102.3 4.7 82 60-144 86-180 (182)
74 3clv_A RAB5 protein, putative; 99.5 2.2E-13 7.4E-18 99.9 8.5 82 60-146 123-205 (208)
75 2gco_A H9, RHO-related GTP-bin 99.5 1.2E-13 4.2E-18 102.2 7.1 82 60-144 103-199 (201)
76 3l0i_B RAS-related protein RAB 99.4 2.7E-15 9.3E-20 110.9 -2.2 84 60-145 112-196 (199)
77 2fv8_A H6, RHO-related GTP-bin 99.4 2.7E-13 9.2E-18 100.8 7.5 84 60-146 103-201 (207)
78 1mh1_A RAC1; GTP-binding, GTPa 99.4 1.6E-13 5.3E-18 99.6 6.0 83 60-145 83-180 (186)
79 3c5h_A Glucocorticoid receptor 99.4 7.4E-14 2.5E-18 107.6 4.2 82 60-144 169-254 (255)
80 1r8s_A ADP-ribosylation factor 99.4 3.8E-14 1.3E-18 100.9 1.3 83 60-145 74-162 (164)
81 4gzl_A RAS-related C3 botulinu 99.4 1.1E-13 3.6E-18 102.9 3.7 81 60-143 108-203 (204)
82 4bas_A ADP-ribosylation factor 99.4 1.5E-13 5E-18 100.9 4.2 88 60-147 93-191 (199)
83 1f6b_A SAR1; gtpases, N-termin 99.4 2.3E-13 8E-18 100.7 5.1 80 60-142 99-196 (198)
84 2qu8_A Putative nucleolar GTP- 99.4 9.4E-13 3.2E-17 99.4 8.5 87 60-149 115-209 (228)
85 1m2o_B GTP-binding protein SAR 99.4 3E-13 1E-17 99.4 4.5 80 60-142 97-189 (190)
86 3llu_A RAS-related GTP-binding 99.4 1.7E-13 5.7E-18 101.1 2.2 80 60-143 102-195 (196)
87 3gj0_A GTP-binding nuclear pro 99.3 3.1E-13 1.1E-17 101.3 3.2 82 60-146 94-176 (221)
88 2zej_A Dardarin, leucine-rich 99.3 1.8E-13 6.1E-18 100.0 1.8 84 60-146 86-179 (184)
89 1upt_A ARL1, ADP-ribosylation 99.3 2.2E-13 7.7E-18 97.4 1.9 85 60-145 81-169 (171)
90 2wkq_A NPH1-1, RAS-related C3 99.3 1.1E-12 3.9E-17 103.6 6.2 83 60-145 233-330 (332)
91 3th5_A RAS-related C3 botulinu 99.0 1E-13 3.4E-18 102.7 0.0 81 60-143 108-203 (204)
92 2b6h_A ADP-ribosylation factor 99.3 1.2E-13 4.2E-18 101.6 0.5 82 60-144 103-190 (192)
93 1fzq_A ADP-ribosylation factor 99.3 2.4E-13 8.3E-18 99.1 1.8 84 60-146 90-179 (181)
94 2x77_A ADP-ribosylation factor 99.3 3.8E-13 1.3E-17 98.2 1.7 84 60-146 96-185 (189)
95 2f9l_A RAB11B, member RAS onco 99.3 7.6E-12 2.6E-16 92.3 8.7 86 60-147 84-170 (199)
96 3r7w_B Gtpase2, GTP-binding pr 99.3 1.7E-13 5.8E-18 109.1 -0.6 87 60-148 79-177 (331)
97 1ksh_A ARF-like protein 2; sma 99.3 5.2E-12 1.8E-16 91.8 6.1 84 60-146 92-181 (186)
98 1u0l_A Probable GTPase ENGC; p 99.3 2.5E-12 8.4E-17 101.5 4.5 76 60-142 91-170 (301)
99 1zj6_A ADP-ribosylation factor 99.3 4.7E-12 1.6E-16 92.3 5.6 83 60-145 90-178 (187)
100 2cxx_A Probable GTP-binding pr 99.3 5.8E-12 2E-16 91.6 6.0 85 59-147 85-186 (190)
101 2h57_A ADP-ribosylation factor 99.3 6.9E-12 2.4E-16 91.6 5.9 84 60-145 97-187 (190)
102 1moz_A ARL1, ADP-ribosylation 99.2 1.2E-12 4E-17 94.8 1.6 84 60-146 92-181 (183)
103 1zd9_A ADP-ribosylation factor 99.2 7.4E-13 2.5E-17 96.9 0.3 83 60-145 97-185 (188)
104 1oix_A RAS-related protein RAB 99.2 1.6E-11 5.4E-16 90.2 7.3 82 60-143 108-190 (191)
105 2h17_A ADP-ribosylation factor 99.2 6.7E-12 2.3E-16 91.1 4.4 80 60-142 95-180 (181)
106 3r7w_A Gtpase1, GTP-binding pr 99.2 4.1E-12 1.4E-16 100.4 2.6 85 60-145 87-181 (307)
107 2wji_A Ferrous iron transport 99.2 2.7E-12 9.3E-17 92.0 1.2 74 61-143 89-163 (165)
108 1cip_A Protein (guanine nucleo 99.2 4.3E-12 1.5E-16 102.3 2.0 86 60-146 223-345 (353)
109 3o47_A ADP-ribosylation factor 99.2 3.9E-12 1.3E-16 101.6 0.9 83 60-145 239-327 (329)
110 2xtz_A Guanine nucleotide-bind 99.1 1.1E-11 3.9E-16 99.8 2.8 87 60-147 213-347 (354)
111 2fh5_B SR-beta, signal recogni 99.1 6.9E-12 2.4E-16 93.3 0.5 83 60-142 85-213 (214)
112 2gj8_A MNME, tRNA modification 99.1 4.8E-12 1.6E-16 91.5 -0.7 76 60-144 90-165 (172)
113 2wjg_A FEOB, ferrous iron tran 99.1 1.8E-11 6E-16 89.0 2.1 80 62-147 91-171 (188)
114 1azs_C GS-alpha; complex (lyas 99.1 3E-11 1E-15 98.7 2.7 87 60-147 247-387 (402)
115 1zcb_A G alpha I/13; GTP-bindi 99.1 2.5E-11 8.5E-16 98.1 1.7 86 60-146 231-354 (362)
116 3ohm_A Guanine nucleotide-bind 99.1 1.9E-11 6.6E-16 97.4 0.7 84 62-146 209-319 (327)
117 2yv5_A YJEQ protein; hydrolase 99.0 9E-11 3.1E-15 92.6 3.7 77 60-141 86-165 (302)
118 3lvq_E ARF-GAP with SH3 domain 99.0 2.3E-11 7.8E-16 101.9 0.1 85 60-147 396-486 (497)
119 1svi_A GTP-binding protein YSX 99.0 1.6E-10 5.6E-15 84.3 3.9 78 61-143 113-193 (195)
120 3pqc_A Probable GTP-binding pr 99.0 1.8E-10 6.2E-15 83.8 4.0 58 87-144 133-193 (195)
121 2dyk_A GTP-binding protein; GT 98.9 1.4E-10 4.9E-15 81.8 1.1 52 87-143 108-160 (161)
122 2e87_A Hypothetical protein PH 98.9 1.3E-09 4.4E-14 87.8 6.3 82 60-146 253-337 (357)
123 3dpu_A RAB family protein; roc 98.9 8.1E-10 2.8E-14 93.4 5.1 80 61-146 129-209 (535)
124 3b1v_A Ferrous iron uptake tra 98.9 3.8E-10 1.3E-14 87.8 2.5 76 60-143 87-162 (272)
125 2lkc_A Translation initiation 98.9 1.9E-09 6.3E-14 77.3 5.9 58 86-146 106-172 (178)
126 3a1s_A Iron(II) transport prot 98.9 5.9E-10 2E-14 86.0 2.7 76 61-144 91-166 (258)
127 3iev_A GTP-binding protein ERA 98.9 2.7E-09 9.2E-14 84.3 6.2 80 60-144 99-181 (308)
128 1lnz_A SPO0B-associated GTP-bi 98.8 1.1E-09 3.7E-14 87.9 3.3 82 60-145 243-330 (342)
129 4fid_A G protein alpha subunit 98.8 5.7E-10 2E-14 89.3 1.3 85 60-145 191-328 (340)
130 2hf9_A Probable hydrogenase ni 98.8 3.6E-09 1.2E-13 79.2 5.5 81 64-145 131-224 (226)
131 4dcu_A GTP-binding protein ENG 98.8 3.6E-09 1.2E-13 87.8 5.8 61 86-146 305-370 (456)
132 2hjg_A GTP-binding protein ENG 98.8 6.1E-09 2.1E-13 86.0 5.7 81 61-146 265-350 (436)
133 3iby_A Ferrous iron transport 98.7 1.4E-09 4.9E-14 83.7 0.6 74 60-142 90-164 (256)
134 1nrj_B SR-beta, signal recogni 98.7 2.2E-09 7.6E-14 79.8 0.4 73 60-132 89-171 (218)
135 4dkx_A RAS-related protein RAB 98.7 6.5E-09 2.2E-13 78.1 2.4 31 1-31 148-178 (216)
136 4dhe_A Probable GTP-binding pr 98.7 1.5E-08 5.2E-13 75.4 4.3 60 87-146 144-212 (223)
137 3i8s_A Ferrous iron transport 98.6 2.3E-09 7.8E-14 83.3 -1.0 76 60-144 92-168 (274)
138 3gee_A MNME, tRNA modification 98.6 4.8E-08 1.7E-12 81.5 5.9 75 60-144 319-397 (476)
139 2qag_A Septin-2, protein NEDD5 98.6 6.2E-09 2.1E-13 84.0 -0.0 82 59-147 149-235 (361)
140 3qq5_A Small GTP-binding prote 98.6 9.6E-09 3.3E-13 84.5 1.1 65 74-145 132-196 (423)
141 1xzp_A Probable tRNA modificat 98.6 7.2E-08 2.5E-12 80.6 6.3 75 61-145 331-405 (482)
142 3k53_A Ferrous iron transport 98.5 2.3E-08 7.9E-13 77.3 1.6 57 88-145 110-166 (271)
143 2wsm_A Hydrogenase expression/ 98.4 1.6E-07 5.5E-12 69.8 3.8 60 87-146 154-215 (221)
144 1mky_A Probable GTP-binding pr 98.4 3E-07 1E-11 75.8 5.7 61 86-146 291-356 (439)
145 3h2y_A GTPase family protein; 98.4 8.7E-07 3E-11 71.6 7.6 75 60-142 76-157 (368)
146 3geh_A MNME, tRNA modification 98.4 1.5E-07 5.2E-12 78.2 3.0 74 61-145 311-384 (462)
147 2qnr_A Septin-2, protein NEDD5 98.3 1E-07 3.4E-12 75.1 1.3 60 86-146 154-215 (301)
148 1wb1_A Translation elongation 98.2 8.2E-07 2.8E-11 74.2 4.7 58 87-144 125-188 (482)
149 1s0u_A EIF-2-gamma, translatio 98.2 1.2E-06 4.1E-11 71.6 5.6 57 88-144 136-197 (408)
150 3cb4_D GTP-binding protein LEP 98.2 2E-06 6.9E-11 73.6 6.4 76 61-144 102-181 (599)
151 1udx_A The GTP-binding protein 98.2 8.8E-07 3E-11 72.7 3.9 83 61-146 243-326 (416)
152 1wf3_A GTP-binding protein; GT 98.2 3.3E-07 1.1E-11 72.1 1.2 75 61-143 94-171 (301)
153 1mky_A Probable GTP-binding pr 98.2 1.2E-06 4.2E-11 72.2 4.1 55 87-145 110-166 (439)
154 3ec1_A YQEH GTPase; atnos1, at 98.1 4.7E-06 1.6E-10 67.3 7.3 74 61-142 79-159 (369)
155 2qag_C Septin-7; cell cycle, c 98.1 3.9E-07 1.3E-11 74.9 0.5 78 60-143 143-225 (418)
156 2ywe_A GTP-binding protein LEP 98.1 3E-06 1E-10 72.5 5.6 76 61-144 104-183 (600)
157 2qtf_A Protein HFLX, GTP-bindi 98.1 3.4E-06 1.2E-10 68.0 5.2 84 61-146 265-355 (364)
158 1ega_A Protein (GTP-binding pr 98.0 5.4E-06 1.9E-10 65.0 4.9 57 87-143 116-173 (301)
159 1kk1_A EIF2gamma; initiation o 98.0 3.1E-06 1.1E-10 69.1 3.4 57 88-144 138-199 (410)
160 3sjy_A Translation initiation 98.0 3.7E-06 1.2E-10 68.6 3.6 80 61-144 106-191 (403)
161 3p26_A Elongation factor 1 alp 98.0 4.1E-06 1.4E-10 69.9 3.7 75 61-135 142-228 (483)
162 1g7s_A Translation initiation 97.9 2.5E-05 8.6E-10 66.8 7.9 77 61-145 101-218 (594)
163 2hjg_A GTP-binding protein ENG 97.9 2E-06 6.8E-11 70.9 1.0 53 87-144 111-164 (436)
164 1vg8_A RAS-related protein RAB 97.8 3.3E-05 1.1E-09 56.2 5.8 31 2-32 148-178 (207)
165 1jny_A EF-1-alpha, elongation 97.8 4.2E-06 1.4E-10 69.0 0.2 76 61-137 115-205 (435)
166 1pui_A ENGB, probable GTP-bind 97.7 1.7E-05 5.7E-10 58.1 3.5 58 87-144 137-198 (210)
167 1yrb_A ATP(GTP)binding protein 97.7 3.4E-05 1.2E-09 58.6 5.3 56 87-144 171-256 (262)
168 1r5b_A Eukaryotic peptide chai 97.7 8.2E-06 2.8E-10 67.8 1.6 74 61-136 152-243 (467)
169 3izy_P Translation initiation 97.7 7.3E-06 2.5E-10 69.3 0.7 56 87-143 104-166 (537)
170 2bcg_Y Protein YP2, GTP-bindin 97.7 6.7E-05 2.3E-09 54.7 5.7 33 1-33 143-175 (206)
171 3p32_A Probable GTPase RV1496/ 97.7 2.9E-05 1E-09 62.2 3.9 58 87-145 217-284 (355)
172 2aka_B Dynamin-1; fusion prote 97.6 3.7E-06 1.3E-10 65.3 -1.6 58 86-143 191-251 (299)
173 1puj_A YLQF, conserved hypothe 97.6 6.2E-05 2.1E-09 58.5 5.0 58 87-146 50-107 (282)
174 1zo1_I IF2, translation initia 97.6 4.1E-06 1.4E-10 70.2 -2.0 56 86-141 102-163 (501)
175 1d2e_A Elongation factor TU (E 97.6 1.9E-05 6.5E-10 64.2 1.8 57 87-143 118-193 (397)
176 2elf_A Protein translation elo 97.5 5.4E-05 1.9E-09 61.1 3.8 59 87-146 111-181 (370)
177 3tr5_A RF-3, peptide chain rel 97.5 0.00013 4.3E-09 61.7 5.6 25 120-144 252-276 (528)
178 3lxx_A GTPase IMAP family memb 97.5 7.7E-05 2.6E-09 56.1 3.8 59 87-145 145-214 (239)
179 2c78_A Elongation factor TU-A; 97.5 2.5E-05 8.6E-10 63.6 0.9 45 87-131 127-180 (405)
180 3t5d_A Septin-7; GTP-binding p 97.5 1.6E-05 5.4E-10 61.4 -0.3 57 87-143 144-202 (274)
181 1zun_B Sulfate adenylate trans 97.4 3.5E-05 1.2E-09 63.4 1.2 50 89-138 159-217 (434)
182 3avx_A Elongation factor TS, e 97.4 0.00013 4.6E-09 66.5 4.9 57 87-143 411-484 (1289)
183 3j2k_7 ERF3, eukaryotic polype 97.4 0.00014 4.7E-09 60.0 4.2 51 87-137 154-217 (439)
184 4dcu_A GTP-binding protein ENG 97.4 5.5E-05 1.9E-09 62.6 1.8 54 86-144 130-184 (456)
185 2xtp_A GTPase IMAP family memb 97.4 3.3E-05 1.1E-09 58.8 0.4 57 88-145 140-208 (260)
186 2ged_A SR-beta, signal recogni 97.3 0.00017 5.9E-09 51.8 3.7 46 60-105 125-174 (193)
187 2dy1_A Elongation factor G; tr 97.2 0.00029 9.8E-09 61.0 5.0 26 119-144 248-273 (665)
188 3izq_1 HBS1P, elongation facto 97.2 0.00011 3.8E-09 63.1 2.2 49 88-136 306-363 (611)
189 1f60_A Elongation factor EEF1A 97.2 0.00014 4.8E-09 60.2 2.4 50 87-136 144-203 (458)
190 3t34_A Dynamin-related protein 97.1 7.2E-05 2.5E-09 59.9 0.0 57 86-142 202-258 (360)
191 3r7w_B Gtpase2, GTP-binding pr 97.1 0.0001 3.5E-09 58.6 0.4 30 2-32 148-177 (331)
192 2p67_A LAO/AO transport system 97.0 0.00058 2E-08 54.3 4.0 58 87-144 194-260 (341)
193 1zbd_A Rabphilin-3A; G protein 96.9 0.00067 2.3E-08 49.1 3.3 30 2-31 144-173 (203)
194 2j69_A Bacterial dynamin-like 96.8 0.00056 1.9E-08 59.5 3.2 81 61-146 208-326 (695)
195 3cpj_B GTP-binding protein YPT 96.8 0.00054 1.9E-08 50.7 2.7 31 1-31 148-178 (223)
196 3cnl_A YLQF, putative uncharac 96.8 0.00091 3.1E-08 51.3 3.9 52 87-141 46-97 (262)
197 3mca_A HBS1, elongation factor 96.7 0.00046 1.6E-08 59.0 1.8 47 87-133 314-371 (592)
198 2j0v_A RAC-like GTP-binding pr 96.7 0.0013 4.3E-08 48.0 3.5 28 3-30 154-181 (212)
199 2www_A Methylmalonic aciduria 96.6 0.0048 1.6E-07 49.2 6.5 57 87-144 212-278 (349)
200 2x2e_A Dynamin-1; nitration, h 96.5 4E-05 1.4E-09 61.3 -5.8 56 86-141 196-254 (353)
201 4djt_A GTP-binding nuclear pro 96.5 0.0015 5.1E-08 47.9 3.1 30 1-30 147-176 (218)
202 3cph_A RAS-related protein SEC 96.5 0.0015 5.3E-08 47.4 3.1 30 2-31 155-184 (213)
203 3l82_B F-box only protein 4; T 96.5 0.0029 1E-07 47.2 4.5 57 86-144 161-222 (227)
204 1jwy_B Dynamin A GTPase domain 96.4 0.0036 1.2E-07 48.6 4.9 59 86-144 197-261 (315)
205 3lxw_A GTPase IMAP family memb 96.4 0.0025 8.5E-08 48.2 3.8 59 87-145 139-208 (247)
206 3gj0_A GTP-binding nuclear pro 96.2 0.0017 5.9E-08 47.7 2.1 29 2-30 148-176 (221)
207 3l2o_B F-box only protein 4; s 96.1 0.011 3.6E-07 46.3 5.8 57 86-144 246-307 (312)
208 2rcn_A Probable GTPase ENGC; Y 96.0 0.005 1.7E-07 49.4 3.9 50 87-138 160-212 (358)
209 2qm8_A GTPase/ATPase; G protei 96.0 0.011 3.7E-07 46.9 5.8 57 88-144 194-260 (337)
210 2f9l_A RAB11B, member RAS onco 95.8 0.011 3.8E-07 42.6 4.7 29 2-30 141-169 (199)
211 1t9h_A YLOQ, probable GTPase E 95.7 0.0013 4.4E-08 51.7 -0.8 53 86-138 116-170 (307)
212 3a1s_A Iron(II) transport prot 95.5 0.009 3.1E-07 45.5 3.4 26 2-27 140-165 (258)
213 2qnr_A Septin-2, protein NEDD5 95.4 0.003 1E-07 49.4 0.4 28 1-29 187-214 (301)
214 3b1v_A Ferrous iron uptake tra 95.3 0.0094 3.2E-07 45.8 2.8 25 2-26 137-161 (272)
215 1dar_A EF-G, elongation factor 95.1 0.023 7.9E-07 49.4 4.8 26 119-144 256-281 (691)
216 2dby_A GTP-binding protein; GD 94.5 0.011 3.9E-07 47.5 1.4 55 87-141 201-258 (368)
217 2h5e_A Peptide chain release f 94.3 0.1 3.6E-06 43.8 6.8 26 119-144 252-277 (529)
218 1u0l_A Probable GTPase ENGC; p 94.0 0.033 1.1E-06 43.3 3.1 25 3-27 147-171 (301)
219 3iby_A Ferrous iron transport 93.5 0.033 1.1E-06 42.3 2.2 25 2-26 140-164 (256)
220 1wxq_A GTP-binding protein; st 93.4 0.0089 3.1E-07 48.5 -1.2 49 87-137 214-262 (397)
221 2xex_A Elongation factor G; GT 93.3 0.16 5.4E-06 44.2 6.4 26 119-144 254-279 (693)
222 2rdo_7 EF-G, elongation factor 93.2 0.18 6.2E-06 43.8 6.6 26 119-144 262-287 (704)
223 3k53_A Ferrous iron transport 92.9 0.062 2.1E-06 40.8 3.0 26 2-27 139-164 (271)
224 3qq5_A Small GTP-binding prote 92.7 0.022 7.7E-07 46.6 0.2 28 1-28 168-195 (423)
225 3dpu_A RAB family protein; roc 92.5 0.037 1.3E-06 46.5 1.3 28 2-29 181-208 (535)
226 3i8s_A Ferrous iron transport 92.3 0.033 1.1E-06 42.6 0.7 26 2-27 142-167 (274)
227 1h65_A Chloroplast outer envel 92.2 0.1 3.5E-06 39.6 3.4 41 68-108 133-175 (270)
228 3def_A T7I23.11 protein; chlor 92.1 0.098 3.4E-06 39.5 3.2 35 74-108 138-172 (262)
229 1xzp_A Probable tRNA modificat 92.1 0.084 2.9E-06 43.9 3.0 27 2-28 378-404 (482)
230 2yv5_A YJEQ protein; hydrolase 91.5 0.11 3.7E-06 40.4 2.8 25 2-26 142-166 (302)
231 3geh_A MNME, tRNA modification 91.3 0.17 5.7E-06 41.9 3.9 26 2-27 357-382 (462)
232 3gee_A MNME, tRNA modification 90.7 0.15 5E-06 42.4 3.0 25 3-27 372-396 (476)
233 3sjy_A Translation initiation 90.6 0.15 5.2E-06 41.1 3.0 26 2-27 165-190 (403)
234 3iev_A GTP-binding protein ERA 90.6 0.15 5.1E-06 39.6 2.8 25 3-27 156-180 (308)
235 3zvr_A Dynamin-1; hydrolase, D 90.4 0.067 2.3E-06 47.0 0.7 54 87-142 217-275 (772)
236 3p32_A Probable GTPase RV1496/ 89.6 0.26 9.1E-06 39.0 3.6 28 2-29 257-284 (355)
237 1s0u_A EIF-2-gamma, translatio 89.4 0.18 6.2E-06 40.7 2.5 26 2-27 171-196 (408)
238 3r7w_A Gtpase1, GTP-binding pr 89.4 0.16 5.4E-06 39.4 2.1 26 3-29 156-181 (307)
239 1kk1_A EIF2gamma; initiation o 87.8 0.32 1.1E-05 39.2 3.0 26 2-27 173-198 (410)
240 1wb1_A Translation elongation 87.7 0.41 1.4E-05 39.7 3.6 27 2-28 162-188 (482)
241 1jal_A YCHF protein; nucleotid 87.3 0.48 1.6E-05 37.9 3.6 43 86-128 198-240 (363)
242 3izy_P Translation initiation 86.9 0.23 8E-06 41.8 1.7 25 3-27 142-166 (537)
243 1udx_A The GTP-binding protein 86.7 0.63 2.1E-05 37.9 4.1 27 2-28 298-324 (416)
244 2qag_A Septin-2, protein NEDD5 86.1 0.16 5.4E-06 40.5 0.3 29 1-30 206-234 (361)
245 3vqt_A RF-3, peptide chain rel 85.8 1.1 3.7E-05 37.8 5.3 26 119-144 269-294 (548)
246 3h2y_A GTPase family protein; 83.6 1.1 3.6E-05 35.8 4.0 23 4-26 135-157 (368)
247 1zo1_I IF2, translation initia 83.5 0.27 9.2E-06 41.1 0.5 23 3-25 141-163 (501)
248 1wf3_A GTP-binding protein; GT 83.0 0.23 7.8E-06 38.5 -0.1 25 3-27 147-171 (301)
249 2qag_C Septin-7; cell cycle, c 81.5 0.15 5.3E-06 41.5 -1.6 26 2-27 200-225 (418)
250 3j25_A Tetracycline resistance 81.4 1.7 5.8E-05 37.3 4.7 26 119-144 213-238 (638)
251 2dy1_A Elongation factor G; tr 81.2 0.74 2.5E-05 39.7 2.4 26 3-28 248-273 (665)
252 2elf_A Protein translation elo 79.9 1.6 5.5E-05 34.8 3.9 27 3-29 149-180 (370)
253 2aka_B Dynamin-1; fusion prote 79.1 0.26 9E-06 37.5 -1.0 22 4-25 228-249 (299)
254 2p67_A LAO/AO transport system 77.4 1.6 5.4E-05 34.3 3.0 26 3-28 235-260 (341)
255 2www_A Methylmalonic aciduria 75.9 2.7 9.4E-05 33.1 4.1 25 3-27 253-277 (349)
256 2ywe_A GTP-binding protein LEP 75.8 1.2 4.1E-05 38.0 2.1 25 4-28 159-183 (600)
257 3cb4_D GTP-binding protein LEP 74.9 1.5 5.2E-05 37.4 2.5 25 4-28 157-181 (599)
258 1g7s_A Translation initiation 74.7 2.2 7.5E-05 36.3 3.4 26 3-28 192-217 (594)
259 1ega_A Protein (GTP-binding pr 73.0 2.5 8.6E-05 32.5 3.1 24 4-27 150-173 (301)
260 3tr5_A RF-3, peptide chain rel 69.3 1.9 6.4E-05 36.2 1.7 25 3-27 251-275 (528)
261 3ec1_A YQEH GTPase; atnos1, at 69.1 4.3 0.00015 32.2 3.8 23 4-26 137-159 (369)
262 1n0u_A EF-2, elongation factor 69.0 1.7 5.7E-05 38.7 1.4 43 61-109 129-173 (842)
263 2qpt_A EH domain-containing pr 68.3 0.88 3E-05 38.4 -0.5 17 87-103 218-234 (550)
264 2xtp_A GTPase IMAP family memb 66.9 0.54 1.8E-05 35.1 -1.9 24 6-29 185-208 (260)
265 3j2k_7 ERF3, eukaryotic polype 66.3 2.3 7.7E-05 34.7 1.6 19 3-21 199-217 (439)
266 1d2e_A Elongation factor TU (E 62.9 1.6 5.4E-05 35.0 0.0 25 3-27 159-193 (397)
267 1jny_A EF-1-alpha, elongation 61.0 1.1 3.7E-05 36.5 -1.2 19 3-21 187-205 (435)
268 3t5d_A Septin-7; GTP-binding p 60.6 1.1 3.9E-05 33.8 -1.1 26 1-26 176-201 (274)
269 1zun_B Sulfate adenylate trans 59.2 1.3 4.5E-05 35.9 -1.0 20 3-22 198-217 (434)
270 3p26_A Elongation factor 1 alp 58.0 3.4 0.00011 34.0 1.2 18 2-19 211-228 (483)
271 1puj_A YLQF, conserved hypothe 54.3 8.2 0.00028 29.3 2.8 27 2-28 79-105 (282)
272 4fn5_A EF-G 1, elongation fact 53.3 25 0.00085 30.4 5.9 25 120-144 266-290 (709)
273 2qm8_A GTPase/ATPase; G protei 50.5 14 0.00048 28.8 3.7 25 3-27 235-259 (337)
274 3mca_A HBS1, elongation factor 49.7 3.6 0.00012 34.9 0.1 16 3-18 357-372 (592)
275 1r5b_A Eukaryotic peptide chai 48.5 2.1 7.1E-05 35.2 -1.5 18 3-20 226-243 (467)
276 4a9a_A Ribosome-interacting GT 47.0 31 0.0011 27.5 5.2 49 87-142 249-297 (376)
277 1tq4_A IIGP1, interferon-induc 47.0 22 0.00077 28.7 4.4 60 87-146 175-254 (413)
278 2c78_A Elongation factor TU-A; 45.7 3.4 0.00012 33.1 -0.7 14 3-16 168-181 (405)
279 1ni3_A YCHF GTPase, YCHF GTP-b 43.9 28 0.00095 27.9 4.5 42 87-128 224-269 (392)
280 1f60_A Elongation factor EEF1A 40.4 5.9 0.0002 32.4 -0.0 18 3-20 186-203 (458)
281 2j37_W Signal recognition part 39.6 5.7 0.0002 33.1 -0.2 51 88-142 240-310 (504)
282 3avx_A Elongation factor TS, e 38.5 10 0.00036 35.2 1.3 25 3-27 452-484 (1289)
283 3izq_1 HBS1P, elongation facto 38.5 6.9 0.00024 33.4 0.1 19 2-20 345-363 (611)
284 2j69_A Bacterial dynamin-like 33.9 23 0.00077 30.6 2.6 27 3-29 285-325 (695)
285 2lju_A Putative oxidoreductase 25.9 49 0.0017 21.5 2.6 22 106-127 68-89 (108)
286 2jya_A AGR_C_3324P, uncharacte 24.9 50 0.0017 21.3 2.5 23 106-128 60-82 (106)
287 1tif_A IF3-N, translation init 21.4 68 0.0023 19.4 2.4 41 90-132 16-56 (78)
288 2h5e_A Peptide chain release f 20.3 54 0.0018 27.3 2.4 25 3-27 252-276 (529)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.90 E-value=3.2e-24 Score=162.45 Aligned_cols=86 Identities=26% Similarity=0.323 Sum_probs=75.3
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|+++++||+++. |+..+.... .+++|++|||||+||.+.|.|+.+++..+|+++++.|+|||||+|.||+++|..
T Consensus 92 v~di~~~~Sf~~i~~~~~~i~~~~--~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~ 169 (216)
T 4dkx_A 92 VYDITNVNSFQQTTKWIDDVRTER--GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR 169 (216)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHH--TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EeecchhHHHHHHHHHHHHHHHhc--CCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence 59999999999998 998774322 357999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 139 ITNLVLRSK 147 (177)
Q Consensus 139 ~~~~~~~~~ 147 (177)
|++.+....
T Consensus 170 i~~~i~~~~ 178 (216)
T 4dkx_A 170 VAAALPGME 178 (216)
T ss_dssp HHHHC----
T ss_pred HHHHHHhhh
Confidence 999987654
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.72 E-value=2.9e-17 Score=122.01 Aligned_cols=90 Identities=30% Similarity=0.369 Sum_probs=78.4
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+.... ..++|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 164 (206)
T 2bcg_Y 87 VYDVTDQESFNGVKMWLQEIDRYA--TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLT 164 (206)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 48999999999997 998774222 347899999999999988889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1416 139 ITNLVLRSKKEQK 151 (177)
Q Consensus 139 ~~~~~~~~~~~~~ 151 (177)
+++.+.+......
T Consensus 165 l~~~i~~~~~~~~ 177 (206)
T 2bcg_Y 165 MARQIKESMSQQN 177 (206)
T ss_dssp HHHHHHHHCCHHH
T ss_pred HHHHHHHHHhhcc
Confidence 9999988765443
No 3
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=1.5e-17 Score=125.26 Aligned_cols=86 Identities=22% Similarity=0.171 Sum_probs=74.4
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|++++.||.++. |+..+.... ...++|++|||||+||...|.|..+++..++..++++|+||||++|.||+++|..
T Consensus 118 Vydvt~~~sf~~~~~~~~~l~~~~-~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~ 196 (211)
T 2g3y_A 118 VYSITDRASFEKASELRIQLRRAR-QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEG 196 (211)
T ss_dssp EEETTCHHHHHHHHHHHHHHHTSG-GGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 48999999999997 987663221 2247899999999999887889999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy1416 139 ITNLVLRS 146 (177)
Q Consensus 139 ~~~~~~~~ 146 (177)
+++.+...
T Consensus 197 l~~~i~~~ 204 (211)
T 2g3y_A 197 IVRQVRLR 204 (211)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988643
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=121.52 Aligned_cols=87 Identities=25% Similarity=0.242 Sum_probs=76.4
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+.. .....++|++|||||+||...+.+..+++..++..++++||++||++|.||+++|..
T Consensus 92 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 170 (206)
T 2bov_A 92 VFSITEMESFAATADFREQILR-VKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD 170 (206)
T ss_dssp EEETTCHHHHHHHHHHHHHHHH-HTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence 48999999999997 9887742 222347899999999999887889999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 139 ITNLVLRSK 147 (177)
Q Consensus 139 ~~~~~~~~~ 147 (177)
+++.+.+..
T Consensus 171 l~~~i~~~~ 179 (206)
T 2bov_A 171 LMREIRARK 179 (206)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcc
Confidence 999998764
No 5
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=118.66 Aligned_cols=86 Identities=21% Similarity=0.158 Sum_probs=75.4
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|++++.||..+. |+..+.. .....++|++|||||+||...+.++.+++..+++.++++|+|+||++|.||+++|..
T Consensus 103 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~ 181 (195)
T 3cbq_A 103 VFSVTDRRSFSKVPETLLRLRA-GRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG 181 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHHH-HSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHH-hcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHH
Confidence 58999999999997 9987642 222247899999999999988889999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy1416 139 ITNLVLRS 146 (177)
Q Consensus 139 ~~~~~~~~ 146 (177)
+++.+.+.
T Consensus 182 l~~~i~~~ 189 (195)
T 3cbq_A 182 AVRQIRLR 189 (195)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99988653
No 6
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.67 E-value=1.7e-16 Score=117.24 Aligned_cols=87 Identities=22% Similarity=0.192 Sum_probs=74.6
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|+|++.||.++. |+..+.... ...++|++|||||+||...+.+..+++..++..++++|+||||++|.||+++|..
T Consensus 87 v~dv~~~~s~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~ 165 (192)
T 2cjw_A 87 VYSITDRASFEKASELRIQLRRAR-QTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEG 165 (192)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHT-TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh-CCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHH
Confidence 48999999999997 876653221 2247899999999999877889999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 139 ITNLVLRSK 147 (177)
Q Consensus 139 ~~~~~~~~~ 147 (177)
+++.+....
T Consensus 166 l~~~~~~~~ 174 (192)
T 2cjw_A 166 IVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999886543
No 7
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.66 E-value=2.2e-16 Score=113.25 Aligned_cols=86 Identities=21% Similarity=0.158 Sum_probs=75.7
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++++||..+. |+..+.. .....++|++|||||+||.+.+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 160 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRA-GRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG 160 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHH-HSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHh-cccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence 58999999999997 9877642 222347999999999999988899999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy1416 139 ITNLVLRS 146 (177)
Q Consensus 139 ~~~~~~~~ 146 (177)
+++.+..+
T Consensus 161 l~~~i~~~ 168 (169)
T 3q85_A 161 AVRQIRLR 168 (169)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99988653
No 8
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.66 E-value=8.2e-17 Score=121.35 Aligned_cols=88 Identities=24% Similarity=0.360 Sum_probs=72.9
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|+++..||..+. |+..+... ...++|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus 92 V~D~~~~~s~~~~~~~l~~i~~~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 169 (223)
T 3cpj_B 92 VYDISKSSSYENCNHWLSELREN--ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEE 169 (223)
T ss_dssp EEC-CCHHHHHHHHHHHHHHHHH--CC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHh--CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 58999999999997 99877422 2347899999999999887889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1416 139 ITNLVLRSKKE 149 (177)
Q Consensus 139 ~~~~~~~~~~~ 149 (177)
+++.+.+....
T Consensus 170 l~~~i~~~~~~ 180 (223)
T 3cpj_B 170 LINTIYQKVSK 180 (223)
T ss_dssp HHHHHTTCC--
T ss_pred HHHHHHHHhhh
Confidence 99998865433
No 9
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.65 E-value=2.9e-16 Score=115.16 Aligned_cols=87 Identities=17% Similarity=0.239 Sum_probs=75.2
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCC--cCCCccCHHHHHHHHHHcC-CcEEEecCCCCCCHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDD--PQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEM 135 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl--~~~~~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~~ 135 (177)
++|++++.||.++. |+..+... ....++|++|||||+|| ...+.++.+++..++..++ +.|+++||++|.||+++
T Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~l 170 (184)
T 3ihw_A 92 VFSLEDEISFQTVYNYFLRLCSF-RNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERV 170 (184)
T ss_dssp EEETTCHHHHHHHHHHHHHHHTT-SCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHH
Confidence 58999999999987 99877422 22247899999999999 4578899999999999997 89999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1416 136 FMAITNLVLRSK 147 (177)
Q Consensus 136 f~~~~~~~~~~~ 147 (177)
|..+++.+.+.+
T Consensus 171 f~~l~~~i~~~~ 182 (184)
T 3ihw_A 171 FQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 10
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.65 E-value=4.6e-16 Score=112.65 Aligned_cols=90 Identities=20% Similarity=0.234 Sum_probs=75.3
Q ss_pred ccccchhhhhcccc-hhhhhhhhhcc-CCCCcEEEEeeCCCC--cCCCccCHHHHHHHHHHc-CCcEEEecCCCCCCHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCW-LFPSGLRLVGNKNDD--PQKKVVLTEDAQRFANQM-GIQLFETSAKDNINVEE 134 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~-~~~~~~ilvgnK~Dl--~~~~~v~~~~~~~~a~~~-~~~~~e~Sak~~~~v~~ 134 (177)
++|++++.||..+. |+..+...... .+++|++|||||+|| ...+.++.+++..++..+ +++|+++||++|.||++
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 158 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDR 158 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHH
Confidence 58999999999997 87655433222 257899999999999 456789999999999987 68999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1416 135 MFMAITNLVLRSKKE 149 (177)
Q Consensus 135 ~f~~~~~~~~~~~~~ 149 (177)
+|..+++.+.+....
T Consensus 159 lf~~l~~~~~~~~~~ 173 (178)
T 2iwr_A 159 VFQEVAQKVVTLRKQ 173 (178)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999876543
No 11
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.65 E-value=3.6e-16 Score=112.58 Aligned_cols=87 Identities=21% Similarity=0.175 Sum_probs=73.6
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|++++.||..+. |+..+.... ...++|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus 84 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (175)
T 2nzj_A 84 VYSIADRGSFESASELRIQLRRTH-QADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEG 162 (175)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh-ccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence 58999999999997 987663221 2347899999999999988889999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 139 ITNLVLRSK 147 (177)
Q Consensus 139 ~~~~~~~~~ 147 (177)
+++.+....
T Consensus 163 l~~~~~~~~ 171 (175)
T 2nzj_A 163 VVRQLRLRR 171 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999887653
No 12
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.65 E-value=6.7e-16 Score=114.39 Aligned_cols=116 Identities=26% Similarity=0.314 Sum_probs=78.0
Q ss_pred ccccchhhhhcccc-hhhhhhhhhcc--CCCCcEEEEeeCCCCcCCCccCHHHHHHHHH-HcCCcEEEecCCCCCCHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCW--LFPSGLRLVGNKNDDPQKKVVLTEDAQRFAN-QMGIQLFETSAKDNINVEEM 135 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~--~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~-~~~~~~~e~Sak~~~~v~~~ 135 (177)
+.|+++..||..+. |+..+...... ..++|++|||||+||. .+.+..+++..++. ..+++|+++||++|.||+++
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 165 (207)
T 1vg8_A 87 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQA 165 (207)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHH
Confidence 48999999999997 98876432211 1468999999999998 56778889999988 67789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcccccCCCCCCCCCCCC-C
Q psy1416 136 FMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKC-C 177 (177)
Q Consensus 136 f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~C-C 177 (177)
|..+++.+.+....... ....+..+.+.+......++++| |
T Consensus 166 ~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~c~c 207 (207)
T 1vg8_A 166 FQTIARNALKQETEVEL-YNEFPEPIKLDKNERAKASAESCSC 207 (207)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHSCCCC-----------------
T ss_pred HHHHHHHHHHhcccccc-ccCCCccccCCcccccccCCCCCCC
Confidence 99999999876543322 22234455555422222345556 6
No 13
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.64 E-value=3.3e-16 Score=111.96 Aligned_cols=86 Identities=20% Similarity=0.169 Sum_probs=74.5
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|++++.||..+. |+..+... ....++|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 157 (166)
T 3q72_A 79 VYSVTDKGSFEKASELRVQLRRA-RQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEG 157 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHC-C---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Confidence 58999999999997 88776422 22357999999999999988899999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy1416 139 ITNLVLRS 146 (177)
Q Consensus 139 ~~~~~~~~ 146 (177)
+++.+.++
T Consensus 158 l~~~~~~~ 165 (166)
T 3q72_A 158 VVRQIRLR 165 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99988654
No 14
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.64 E-value=6.3e-16 Score=112.43 Aligned_cols=88 Identities=28% Similarity=0.355 Sum_probs=72.3
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|++++.||..+. |+..+... ...++|++|||||+||.+.+.++.+++..+++.++++|+++||++|.||+++|..
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 164 (183)
T 2fu5_C 87 VYDITNEKSFDNIRNWIRNIEEH--ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT 164 (183)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH--SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHh--cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 58999999999997 99877422 2247899999999999988889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1416 139 ITNLVLRSKKE 149 (177)
Q Consensus 139 ~~~~~~~~~~~ 149 (177)
+++.+.++...
T Consensus 165 l~~~i~~~~~~ 175 (183)
T 2fu5_C 165 LARDIKAKMDK 175 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999876543
No 15
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=5.5e-16 Score=113.91 Aligned_cols=86 Identities=31% Similarity=0.437 Sum_probs=76.9
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|++++.||..+. |+..+... ...++|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 179 (191)
T 3dz8_A 102 MYDITNEESFNAVQDWATQIKTY--SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFER 179 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHh--cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 58999999999997 99887432 2357999999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 139 ITNLVLRSK 147 (177)
Q Consensus 139 ~~~~~~~~~ 147 (177)
+++.+.++.
T Consensus 180 l~~~i~~~~ 188 (191)
T 3dz8_A 180 LVDAICDKM 188 (191)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999988764
No 16
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=112.00 Aligned_cols=88 Identities=32% Similarity=0.380 Sum_probs=76.9
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|++++.||..+. |+..+... ...++|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 172 (196)
T 3tkl_A 95 VYDVTDQESFNNVKQWLQEIDRY--ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 172 (196)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHh--cCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Confidence 58999999999997 98877322 2347899999999999988899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1416 139 ITNLVLRSKKE 149 (177)
Q Consensus 139 ~~~~~~~~~~~ 149 (177)
+++.+.+....
T Consensus 173 l~~~i~~~~~~ 183 (196)
T 3tkl_A 173 MAAEIKKRMGP 183 (196)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHhcc
Confidence 99999876543
No 17
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.63 E-value=1.1e-15 Score=111.21 Aligned_cols=85 Identities=21% Similarity=0.253 Sum_probs=75.3
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCC-CCCCHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAK-DNINVEEMFM 137 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak-~~~~v~~~f~ 137 (177)
+.|++++.||..+. |+..+... ....++|++|||||+||...+.+..+++..+++.++++|+++||+ +|.||+++|.
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~ 174 (183)
T 3kkq_A 96 VYSVTDKASFEHVDRFHQLILRV-KDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 174 (183)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-HTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-cCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHH
Confidence 58999999999997 98876422 223578999999999999888999999999999999999999999 9999999999
Q ss_pred HHHHHHHH
Q psy1416 138 AITNLVLR 145 (177)
Q Consensus 138 ~~~~~~~~ 145 (177)
.+++.+.+
T Consensus 175 ~l~~~i~~ 182 (183)
T 3kkq_A 175 DLVRVIRQ 182 (183)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99988764
No 18
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=113.03 Aligned_cols=86 Identities=27% Similarity=0.327 Sum_probs=75.9
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEMFM 137 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~f~ 137 (177)
++|++++.||..+. |+..+.... ..++|++|||||+||...+.++.+++..+++.+++ .|+++||++|.||+++|.
T Consensus 108 v~D~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 185 (201)
T 2hup_A 108 AYDITKRSSFLSVPHWIEDVRKYA--GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFL 185 (201)
T ss_dssp EEETTBHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHH
Confidence 58999999999997 998774222 35799999999999988788999999999999999 999999999999999999
Q ss_pred HHHHHHHHHH
Q psy1416 138 AITNLVLRSK 147 (177)
Q Consensus 138 ~~~~~~~~~~ 147 (177)
.+++.+.++.
T Consensus 186 ~l~~~i~~~~ 195 (201)
T 2hup_A 186 RVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999987653
No 19
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.61 E-value=1.8e-15 Score=111.12 Aligned_cols=86 Identities=27% Similarity=0.348 Sum_probs=76.1
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+... ...++|++|||||+||...+.+..+++..++..+++.|+++||++|.||+++|..
T Consensus 100 v~d~~~~~s~~~~~~~l~~i~~~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (191)
T 2a5j_A 100 VYDITRRETFNHLTSWLEDARQH--SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFIN 177 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--cCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 48999999999997 99877422 2357899999999999887889999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 139 ITNLVLRSK 147 (177)
Q Consensus 139 ~~~~~~~~~ 147 (177)
+++.+.++.
T Consensus 178 l~~~i~~~~ 186 (191)
T 2a5j_A 178 TAKEIYRKI 186 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 20
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=1.3e-15 Score=113.37 Aligned_cols=86 Identities=23% Similarity=0.285 Sum_probs=75.9
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|++++.||..+. |+..+... ...++|++|||||+||...+.+..+++..++...+++|+++||++|.||+++|..
T Consensus 105 v~D~~~~~s~~~~~~~~~~i~~~--~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 182 (201)
T 2ew1_A 105 TYDITCEESFRCLPEWLREIEQY--ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD 182 (201)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 58999999999997 99877422 2347899999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 139 ITNLVLRSK 147 (177)
Q Consensus 139 ~~~~~~~~~ 147 (177)
+++.+.++.
T Consensus 183 l~~~i~~~~ 191 (201)
T 2ew1_A 183 LACRLISEA 191 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
No 21
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.60 E-value=4.5e-15 Score=108.02 Aligned_cols=88 Identities=27% Similarity=0.294 Sum_probs=75.3
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+.. .....++|++|||||+||. .+.+..+++..++..++++|+++||++|.||+++|..
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKR-VKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHH-HTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHH-hcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 48999999999997 9877642 2223579999999999997 4567889999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1416 139 ITNLVLRSKKE 149 (177)
Q Consensus 139 ~~~~~~~~~~~ 149 (177)
+++.+.+....
T Consensus 160 l~~~~~~~~~~ 170 (189)
T 4dsu_A 160 LVREIRKHKEK 170 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhh
Confidence 99999876543
No 22
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.60 E-value=4.9e-16 Score=114.08 Aligned_cols=85 Identities=21% Similarity=0.204 Sum_probs=74.2
Q ss_pred ccccchhhhhcccc-hhhhhhhhhc-cCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecC-CCCCCHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYC-WLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSA-KDNINVEEMF 136 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa-k~~~~v~~~f 136 (177)
++|++++.||..+. |+..+..... ...++|++|||||+||...+.++.+++..+++.+++.|+++|| ++|.||+++|
T Consensus 98 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf 177 (187)
T 3c5c_A 98 VYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVF 177 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHH
Confidence 58999999999997 9987743211 1247899999999999888889999999999999999999999 8999999999
Q ss_pred HHHHHHHH
Q psy1416 137 MAITNLVL 144 (177)
Q Consensus 137 ~~~~~~~~ 144 (177)
..+++.+.
T Consensus 178 ~~l~~~i~ 185 (187)
T 3c5c_A 178 HEAVREAR 185 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998875
No 23
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=7e-16 Score=113.49 Aligned_cols=86 Identities=33% Similarity=0.317 Sum_probs=72.1
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|++++.||..+. |+..+........++|++|||||+||.. +.+..+++..++..++++|+++||++|.||+++|..
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQE 164 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Confidence 48999999999997 8766643333234789999999999975 667889999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy1416 139 ITNLVLRS 146 (177)
Q Consensus 139 ~~~~~~~~ 146 (177)
+++.+.++
T Consensus 165 l~~~~~~~ 172 (199)
T 2gf0_A 165 LLTLETRR 172 (199)
T ss_dssp HHHHCSSS
T ss_pred HHHHHhhh
Confidence 99876543
No 24
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.59 E-value=1e-15 Score=111.14 Aligned_cols=87 Identities=21% Similarity=0.166 Sum_probs=74.2
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|++++.||..+. |+..+... ....++|++|||||+||...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDM-VGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-C----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence 58999999999997 98776322 22347899999999999988999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 139 ITNLVLRSK 147 (177)
Q Consensus 139 ~~~~~~~~~ 147 (177)
+++.+.+..
T Consensus 163 l~~~~~~~~ 171 (181)
T 3t5g_A 163 IILEAEKMD 171 (181)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHHhc
Confidence 999887653
No 25
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=2.8e-15 Score=110.54 Aligned_cols=87 Identities=25% Similarity=0.287 Sum_probs=76.1
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCC-CHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNI-NVEEMFM 137 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~-~v~~~f~ 137 (177)
+.|+++++||..+. |+..+... ....++|++|||||+||...+.++.+++..+++.++++|+++||++|. ||+++|.
T Consensus 105 v~D~~~~~s~~~~~~~~~~i~~~-~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 105 VYDITDRGSFEEVLPLKNILDEI-KKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-HTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-hCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence 58999999999997 98777432 223578999999999998878899999999999999999999999999 9999999
Q ss_pred HHHHHHHHHH
Q psy1416 138 AITNLVLRSK 147 (177)
Q Consensus 138 ~~~~~~~~~~ 147 (177)
.+++.+.++.
T Consensus 184 ~l~~~i~~~~ 193 (196)
T 2atv_A 184 ELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999987653
No 26
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.58 E-value=3.6e-15 Score=110.49 Aligned_cols=86 Identities=27% Similarity=0.320 Sum_probs=76.0
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+.... ..++|++|||||+||...+.++.+++..+++..++.|+++||++|.||+++|..
T Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 181 (200)
T 2o52_A 104 VYDITSRETYNSLAAWLTDARTLA--SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK 181 (200)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHT--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 58999999999997 987763222 257899999999999887889999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 139 ITNLVLRSK 147 (177)
Q Consensus 139 ~~~~~~~~~ 147 (177)
+++.+.++.
T Consensus 182 l~~~i~~~~ 190 (200)
T 2o52_A 182 CARTILNKI 190 (200)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 27
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.58 E-value=3.3e-15 Score=107.76 Aligned_cols=84 Identities=26% Similarity=0.390 Sum_probs=73.2
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+... ...++|++|||||+||...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (179)
T 1z0f_A 94 VYDITRRSTYNHLSSWLTDARNL--TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE 171 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEeCcCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 48999999999997 98876422 2247899999999999887888999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy1416 139 ITNLVLR 145 (177)
Q Consensus 139 ~~~~~~~ 145 (177)
+++.+.+
T Consensus 172 l~~~i~~ 178 (179)
T 1z0f_A 172 AAKKIYQ 178 (179)
T ss_dssp HHHHHC-
T ss_pred HHHHHhh
Confidence 9987753
No 28
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.58 E-value=3.9e-15 Score=109.03 Aligned_cols=85 Identities=31% Similarity=0.511 Sum_probs=75.3
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+... ...++|++|||||+||...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus 101 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 178 (189)
T 2gf9_A 101 MYDIANQESFAAVQDWATQIKTY--SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFER 178 (189)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--cCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 58999999999997 99877422 2347899999999999888888999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy1416 139 ITNLVLRS 146 (177)
Q Consensus 139 ~~~~~~~~ 146 (177)
+++.+.++
T Consensus 179 l~~~i~~~ 186 (189)
T 2gf9_A 179 LVDVICEK 186 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988765
No 29
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.58 E-value=3.7e-15 Score=108.45 Aligned_cols=86 Identities=27% Similarity=0.319 Sum_probs=75.9
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|++++.||..+. |+..+... ...++|++|||||+||...+.++.+++..++..++++|+++||++|.||+++|..
T Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 166 (186)
T 2bme_A 89 VYDITSRETYNALTNWLTDARML--ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ 166 (186)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 58999999999997 98776322 2257899999999999877889999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 139 ITNLVLRSK 147 (177)
Q Consensus 139 ~~~~~~~~~ 147 (177)
+++.+.++.
T Consensus 167 l~~~~~~~~ 175 (186)
T 2bme_A 167 CARKILNKI 175 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998764
No 30
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.57 E-value=6.2e-15 Score=109.03 Aligned_cols=88 Identities=31% Similarity=0.478 Sum_probs=77.2
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|+++..||..+. |+..+... ...++|++|||||+||...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (203)
T 1zbd_A 87 MYDITNEESFNAVQDWSTQIKTY--SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER 164 (203)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH--SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHh--cCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHH
Confidence 58999999999997 98877422 2347899999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1416 139 ITNLVLRSKKE 149 (177)
Q Consensus 139 ~~~~~~~~~~~ 149 (177)
+++.+.++...
T Consensus 165 l~~~i~~~~~~ 175 (203)
T 1zbd_A 165 LVDVICEKMSE 175 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99998876543
No 31
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.57 E-value=2.4e-15 Score=108.58 Aligned_cols=86 Identities=23% Similarity=0.224 Sum_probs=72.7
Q ss_pred ccccchhhhhcccc-hhhhhhhhhcc-CCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCW-LFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~ 137 (177)
++|++++.||..+. |+..+...... ...+|++|||||+||.+.+.++.+++..+++.++++|+++||++|.||+++|.
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 165 (178)
T 2hxs_A 86 VYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQ 165 (178)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Confidence 48999999999997 98877432211 12344899999999988788999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy1416 138 AITNLVLR 145 (177)
Q Consensus 138 ~~~~~~~~ 145 (177)
.+++.+.+
T Consensus 166 ~l~~~~~~ 173 (178)
T 2hxs_A 166 KVAAEILG 173 (178)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99988764
No 32
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.57 E-value=2.2e-15 Score=113.04 Aligned_cols=85 Identities=19% Similarity=0.163 Sum_probs=73.6
Q ss_pred ccccchhhhhcc-cc-hhhhhhhhhccCCCCcEEEEeeCCCCcC------------CCccCHHHHHHHHHHcCC-cEEEe
Q psy1416 60 VCTVLNECAWLG-CG-WMTICPIIYCWLFPSGLRLVGNKNDDPQ------------KKVVLTEDAQRFANQMGI-QLFET 124 (177)
Q Consensus 60 ~~dit~~~Sf~~-~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~------------~~~v~~~~~~~~a~~~~~-~~~e~ 124 (177)
++|++++.||.. +. |+..+... .+++|++|||||+||.. .+.++.+++..+++.+++ .|+|+
T Consensus 105 v~d~~~~~s~~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 181 (214)
T 3q3j_B 105 CFDISRPETVDSALKKWRTEILDY---CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEG 181 (214)
T ss_dssp EEETTCTHHHHHHHTHHHHHHHHH---CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEECcCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEe
Confidence 599999999999 56 99877432 25799999999999976 378999999999999999 99999
Q ss_pred cCCCCCC-HHHHHHHHHHHHHHHH
Q psy1416 125 SAKDNIN-VEEMFMAITNLVLRSK 147 (177)
Q Consensus 125 Sak~~~~-v~~~f~~~~~~~~~~~ 147 (177)
||++|.| |+++|..+++.+.+..
T Consensus 182 SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 182 SAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHC--
T ss_pred ccCCCcccHHHHHHHHHHHHhccC
Confidence 9999998 9999999999887654
No 33
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.57 E-value=7.4e-15 Score=106.05 Aligned_cols=87 Identities=55% Similarity=0.731 Sum_probs=77.2
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+.. ..+++|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus 88 v~d~~~~~s~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (181)
T 3tw8_B 88 VYDVTSAESFVNVKRWLHEINQ---NCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNC 164 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHH---HCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHH---hCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 58999999999997 9887732 2247899999999999988889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1416 139 ITNLVLRSKKE 149 (177)
Q Consensus 139 ~~~~~~~~~~~ 149 (177)
+.+.+.+....
T Consensus 165 l~~~~~~~~~~ 175 (181)
T 3tw8_B 165 ITELVLRAKKD 175 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 99999876544
No 34
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.57 E-value=2.5e-15 Score=107.67 Aligned_cols=83 Identities=25% Similarity=0.408 Sum_probs=73.4
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+.... ..++|++||+||+||...+.++.+++..+++.++++|+++||++|.||+++|..
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 85 VYDITDEDSFQKVKNWVKELRKML--GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHH--GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 58999999999997 988764222 247899999999999888889999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy1416 139 ITNLVL 144 (177)
Q Consensus 139 ~~~~~~ 144 (177)
+++.+.
T Consensus 163 l~~~~~ 168 (170)
T 1z08_A 163 LCKRMI 168 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998875
No 35
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.57 E-value=3.6e-15 Score=106.23 Aligned_cols=85 Identities=25% Similarity=0.241 Sum_probs=74.1
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|++++.||..+. |+..+.. .....++|++||+||+|+.+.+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILR-VKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHH-HHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHH-hcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 48999999999997 9887742 222347899999999999887889999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy1416 139 ITNLVLR 145 (177)
Q Consensus 139 ~~~~~~~ 145 (177)
+++.+.+
T Consensus 161 l~~~i~~ 167 (168)
T 1u8z_A 161 LMREIRA 167 (168)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9988753
No 36
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.57 E-value=2.1e-15 Score=111.69 Aligned_cols=87 Identities=20% Similarity=0.198 Sum_probs=74.5
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|++++.||..+. |+..+... ....++|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 180 (201)
T 3oes_A 102 VYSVTSLHSFQVIESLYQKLHEG-HGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTK 180 (201)
T ss_dssp EEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence 58999999999997 98877422 22347899999999999988899999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 139 ITNLVLRSK 147 (177)
Q Consensus 139 ~~~~~~~~~ 147 (177)
+++.+.+..
T Consensus 181 l~~~i~~~~ 189 (201)
T 3oes_A 181 VIQEIARVE 189 (201)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhhh
Confidence 999987653
No 37
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.57 E-value=4.5e-15 Score=107.22 Aligned_cols=87 Identities=25% Similarity=0.265 Sum_probs=75.6
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|+++..||..+. |+..+.... ...++|++|||||+||...+.+..+++..++..+++.|+++||++|.||+++|..
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 165 (181)
T 2fn4_A 87 VFAINDRQSFNEVGKLFTQILRVK-DRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQ 165 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHH-TSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 48999999999997 987763222 2357899999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 139 ITNLVLRSK 147 (177)
Q Consensus 139 ~~~~~~~~~ 147 (177)
+++.+.+..
T Consensus 166 l~~~~~~~~ 174 (181)
T 2fn4_A 166 LVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999887653
No 38
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=8.1e-15 Score=106.00 Aligned_cols=85 Identities=32% Similarity=0.473 Sum_probs=74.2
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|+++..||..+. |+..+.... ..++|++||+||+||...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus 90 v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 167 (180)
T 2g6b_A 90 LYDVTNKASFDNIQAWLTEIHEYA--QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTA 167 (180)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 48999999999997 988774222 257899999999999988889999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy1416 139 ITNLVLRS 146 (177)
Q Consensus 139 ~~~~~~~~ 146 (177)
+++.+.+.
T Consensus 168 l~~~~~~~ 175 (180)
T 2g6b_A 168 IAKELKRR 175 (180)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99888654
No 39
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.56 E-value=6.6e-15 Score=106.85 Aligned_cols=87 Identities=25% Similarity=0.242 Sum_probs=75.9
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+.. .....++|++||+||+||...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus 96 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 174 (187)
T 2a9k_A 96 VFSITEMESFAATADFREQILR-VKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD 174 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHH-HHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 48999999999997 9887742 222347899999999999887888999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 139 ITNLVLRSK 147 (177)
Q Consensus 139 ~~~~~~~~~ 147 (177)
+++.+.+.+
T Consensus 175 l~~~i~~~~ 183 (187)
T 2a9k_A 175 LMREIRARK 183 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999987654
No 40
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.56 E-value=8.8e-15 Score=104.33 Aligned_cols=83 Identities=27% Similarity=0.290 Sum_probs=72.3
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHc-CCcEEEecCCCCCCHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQM-GIQLFETSAKDNINVEEMFM 137 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~-~~~~~e~Sak~~~~v~~~f~ 137 (177)
+.|++++.||..+. |+..+.... ...++|++|||||+||.+.+.+..+++..+++.+ +.+|+++||++|.||+++|.
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVK-DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY 159 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHH-CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh-CcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence 48999999999997 987764322 2357899999999999888889999999999998 78999999999999999999
Q ss_pred HHHHHH
Q psy1416 138 AITNLV 143 (177)
Q Consensus 138 ~~~~~~ 143 (177)
.+++.+
T Consensus 160 ~l~~~i 165 (167)
T 1c1y_A 160 DLVRQI 165 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998876
No 41
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.56 E-value=1.2e-14 Score=106.01 Aligned_cols=88 Identities=25% Similarity=0.461 Sum_probs=76.5
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+.. .....++|++||+||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus 100 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 178 (195)
T 3bc1_A 100 LFDLTNEQSFLNVRNWISQLQM-HAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEM 178 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHHH-HSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHH
Confidence 58999999999987 9887742 222257899999999999887888999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy1416 139 ITNLVLRSKK 148 (177)
Q Consensus 139 ~~~~~~~~~~ 148 (177)
+++.+.++..
T Consensus 179 l~~~~~~~~~ 188 (195)
T 3bc1_A 179 LLDLIMKRME 188 (195)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999987643
No 42
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.56 E-value=1.3e-14 Score=108.51 Aligned_cols=88 Identities=26% Similarity=0.460 Sum_probs=76.5
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+.. .....++|++||+||+||...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus 114 V~D~~~~~s~~~~~~~l~~i~~-~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 192 (217)
T 2f7s_A 114 MFDLTSQQSFLNVRNWMSQLQA-NAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVET 192 (217)
T ss_dssp EEETTCHHHHHHHHHHHHTCCC-CCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHH-hcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHH
Confidence 58999999999997 9887632 222257899999999999887889999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy1416 139 ITNLVLRSKK 148 (177)
Q Consensus 139 ~~~~~~~~~~ 148 (177)
+++.+.++..
T Consensus 193 l~~~i~~~~~ 202 (217)
T 2f7s_A 193 LLDLIMKRME 202 (217)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999887643
No 43
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.55 E-value=1.1e-14 Score=104.11 Aligned_cols=84 Identities=29% Similarity=0.472 Sum_probs=72.7
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+... ...++|++||+||+|| ..+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 158 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEH--ANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT 158 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 48999999999997 98777422 2247899999999999 45678899999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy1416 139 ITNLVLRS 146 (177)
Q Consensus 139 ~~~~~~~~ 146 (177)
+++.+.++
T Consensus 159 l~~~~~~~ 166 (170)
T 1g16_A 159 LAKLIQEK 166 (170)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99988764
No 44
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=106.97 Aligned_cols=86 Identities=29% Similarity=0.310 Sum_probs=75.5
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+... ...++|++|||||+||...+.+..+++..++..+++.|+++||++|.||+++|..
T Consensus 104 v~D~~~~~s~~~~~~~l~~i~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 181 (193)
T 2oil_A 104 VFDLTKHQTYAVVERWLKELYDH--AEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFET 181 (193)
T ss_dssp EEETTCHHHHHTHHHHHHHHHTT--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--cCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 58999999999987 98777322 2357899999999999887888999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 139 ITNLVLRSK 147 (177)
Q Consensus 139 ~~~~~~~~~ 147 (177)
+++.+.++.
T Consensus 182 l~~~i~~~~ 190 (193)
T 2oil_A 182 VLKEIFAKV 190 (193)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988754
No 45
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.55 E-value=4.7e-15 Score=105.93 Aligned_cols=82 Identities=32% Similarity=0.405 Sum_probs=71.9
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|++++.||..+. |+..+... ..+++|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 85 VYDITNEESFARAKNWVKELQRQ--ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 48999999999997 98877422 2357999999999999887888999999999999999999999999999999999
Q ss_pred HHHHH
Q psy1416 139 ITNLV 143 (177)
Q Consensus 139 ~~~~~ 143 (177)
+++.+
T Consensus 163 i~~~~ 167 (170)
T 1r2q_A 163 IAKKL 167 (170)
T ss_dssp HHHTS
T ss_pred HHHHH
Confidence 98754
No 46
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.55 E-value=7.1e-15 Score=108.17 Aligned_cols=85 Identities=29% Similarity=0.485 Sum_probs=73.4
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHc-CCcEEEecCCCCCCHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQM-GIQLFETSAKDNINVEEMFM 137 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~-~~~~~e~Sak~~~~v~~~f~ 137 (177)
+.|+++..||..+. |+..+... ...++|++|||||+||...+.+..+++..+++.. ++.|+++||++|.||+++|.
T Consensus 105 V~D~~~~~s~~~~~~~~~~i~~~--~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 182 (192)
T 2il1_A 105 VYDITKKETFDDLPKWMKMIDKY--ASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFL 182 (192)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHH
Confidence 48999999999997 98776322 2347899999999999888889999999999985 78999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 138 AITNLVLRS 146 (177)
Q Consensus 138 ~~~~~~~~~ 146 (177)
.+++.+.++
T Consensus 183 ~l~~~i~~~ 191 (192)
T 2il1_A 183 KLVDDILKK 191 (192)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999988653
No 47
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.55 E-value=1.1e-14 Score=107.71 Aligned_cols=90 Identities=23% Similarity=0.326 Sum_probs=66.2
Q ss_pred ccccchhhhhcccc-hhhhhhhhhcc-CCCCcEEEEeeCCCCcC-CCccCHHHHHHHHHHcCCcEEEecCCC-CCCHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCW-LFPSGLRLVGNKNDDPQ-KKVVLTEDAQRFANQMGIQLFETSAKD-NINVEEM 135 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~-~~~~~~ilvgnK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~Sak~-~~~v~~~ 135 (177)
++|+++..||..+. |+..+...... ..++|++|||||+||.. .+.++.+++..+++.++++|+++||++ |.||+++
T Consensus 103 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l 182 (208)
T 2yc2_C 103 VFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAP 182 (208)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHH
Confidence 58999999999997 99877422110 14789999999999988 788999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1416 136 FMAITNLVLRSKKE 149 (177)
Q Consensus 136 f~~~~~~~~~~~~~ 149 (177)
|..+++.+.+....
T Consensus 183 ~~~i~~~~~~~~~~ 196 (208)
T 2yc2_C 183 FLSIATTFYRNYED 196 (208)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998876544
No 48
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.55 E-value=6.8e-15 Score=106.51 Aligned_cols=85 Identities=32% Similarity=0.386 Sum_probs=73.5
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+... ..+++|++||+||+||...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 168 (181)
T 2efe_B 91 VFDVTNQASFERAKKWVQELQAQ--GNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYE 168 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH--SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 48999999999997 99877432 2257899999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy1416 139 ITNLVLRS 146 (177)
Q Consensus 139 ~~~~~~~~ 146 (177)
+++.+.+.
T Consensus 169 l~~~~~~~ 176 (181)
T 2efe_B 169 IARRLPRV 176 (181)
T ss_dssp HHHTCC--
T ss_pred HHHHHHhc
Confidence 99877554
No 49
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.54 E-value=1.2e-14 Score=103.95 Aligned_cols=82 Identities=26% Similarity=0.363 Sum_probs=72.4
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+.. ...+.+|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus 85 v~d~~~~~s~~~~~~~~~~l~~--~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 85 VYDITKEETFSTLKNWVRELRQ--HGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHH--HSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHH--hCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 58999999999997 9887743 22357899999999999887888999999999999999999999999999999999
Q ss_pred HHHHH
Q psy1416 139 ITNLV 143 (177)
Q Consensus 139 ~~~~~ 143 (177)
+++.+
T Consensus 163 i~~~i 167 (170)
T 1z0j_A 163 ISRRI 167 (170)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 98765
No 50
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.53 E-value=7.6e-15 Score=108.51 Aligned_cols=84 Identities=27% Similarity=0.301 Sum_probs=71.1
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCc------CCCccCHHHHHHHHHHcCCcEEEecCCCCCCH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDP------QKKVVLTEDAQRFANQMGIQLFETSAKDNINV 132 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~------~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v 132 (177)
++|+++..||..+. |+..+... ...++|++|||||+||. ..+.+..+++..++..++++|+++||++|.||
T Consensus 107 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv 184 (199)
T 2p5s_A 107 LYDVTCEKSFLNIREWVDMIEDA--AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI 184 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH--C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTH
T ss_pred EEECCChHHHHHHHHHHHHHHHh--cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCH
Confidence 48999999999997 98876322 22478999999999996 46788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1416 133 EEMFMAITNLVLR 145 (177)
Q Consensus 133 ~~~f~~~~~~~~~ 145 (177)
+++|..+++.+.+
T Consensus 185 ~el~~~l~~~i~~ 197 (199)
T 2p5s_A 185 VEAVLHLAREVKK 197 (199)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987753
No 51
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.53 E-value=8.7e-15 Score=104.12 Aligned_cols=84 Identities=24% Similarity=0.272 Sum_probs=72.8
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+... ....+.|++||+||+|+...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 159 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRV-KRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE 159 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-TTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence 58999999999997 88766322 22247899999999999887889999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy1416 139 ITNLVL 144 (177)
Q Consensus 139 ~~~~~~ 144 (177)
+++.+.
T Consensus 160 l~~~~~ 165 (167)
T 1kao_A 160 IVRQMN 165 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998764
No 52
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.53 E-value=8.8e-15 Score=104.45 Aligned_cols=83 Identities=22% Similarity=0.306 Sum_probs=73.5
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+.... .+.|++||+||+||...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 160 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY 160 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence 48999999999997 988774322 47899999999999887888999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy1416 139 ITNLVLR 145 (177)
Q Consensus 139 ~~~~~~~ 145 (177)
+++.+.+
T Consensus 161 l~~~~~~ 167 (168)
T 1z2a_A 161 LAEKHLQ 167 (168)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988764
No 53
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.52 E-value=6.2e-15 Score=108.40 Aligned_cols=84 Identities=26% Similarity=0.346 Sum_probs=73.3
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+... ...++|++|||||+||...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus 102 V~d~~~~~s~~~~~~~~~~i~~~--~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 179 (192)
T 2fg5_A 102 VYDITKQDSFYTLKKWVKELKEH--GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQG 179 (192)
T ss_dssp EEETTCTHHHHHHHHHHHHHHHH--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHh--CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 58999999999997 99877422 2347899999999999877888999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy1416 139 ITNLVLR 145 (177)
Q Consensus 139 ~~~~~~~ 145 (177)
+++.+.+
T Consensus 180 l~~~i~~ 186 (192)
T 2fg5_A 180 ISRQIPP 186 (192)
T ss_dssp HHHTCC-
T ss_pred HHHHHHh
Confidence 9987654
No 54
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.52 E-value=3.6e-14 Score=104.15 Aligned_cols=82 Identities=20% Similarity=0.271 Sum_probs=71.1
Q ss_pred ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcCC-cEEEe
Q psy1416 60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMGI-QLFET 124 (177)
Q Consensus 60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~e~ 124 (177)
++|++++.||..+. |+..+... .+++|++|||||+||... +.++.+++..+++.+++ .|+++
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 172 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEY---APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC 172 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH---STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEe
Confidence 48999999999983 98777422 247899999999999753 57899999999999998 89999
Q ss_pred cCCCCCCHHHHHHHHHHHHH
Q psy1416 125 SAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 125 Sak~~~~v~~~f~~~~~~~~ 144 (177)
||++|.||+++|..+++.++
T Consensus 173 Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 173 SALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998775
No 55
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.52 E-value=1.5e-14 Score=105.89 Aligned_cols=84 Identities=32% Similarity=0.385 Sum_probs=70.8
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCC---CCHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDN---INVEEM 135 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~---~~v~~~ 135 (177)
+.|+++..||..+. |+..+.. .....++|++|||||+||...+.+..+++..++..+++.|+++||++| .||+++
T Consensus 100 v~D~~~~~s~~~~~~~~~~i~~-~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l 178 (189)
T 1z06_A 100 VYDMTNMASFHSLPAWIEECKQ-HLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI 178 (189)
T ss_dssp EEETTCHHHHHTHHHHHHHHHH-HCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHH
Confidence 58999999999997 9887742 222357899999999999888889999999999999999999999999 999999
Q ss_pred HHHHHHHHH
Q psy1416 136 FMAITNLVL 144 (177)
Q Consensus 136 f~~~~~~~~ 144 (177)
|..+++.+.
T Consensus 179 ~~~l~~~i~ 187 (189)
T 1z06_A 179 FMTLAHKLK 187 (189)
T ss_dssp HHHHC----
T ss_pred HHHHHHHHh
Confidence 999988764
No 56
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.52 E-value=4.8e-15 Score=110.41 Aligned_cols=85 Identities=21% Similarity=0.316 Sum_probs=72.0
Q ss_pred ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCCc--------cCHHHHHHHHHHcCC-cEEEecCCC
Q psy1416 60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKKV--------VLTEDAQRFANQMGI-QLFETSAKD 128 (177)
Q Consensus 60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~--------v~~~~~~~~a~~~~~-~~~e~Sak~ 128 (177)
+.|++++.||.++. |+..+... .+++|++|||||+||...+. ++.+++..++..+++ +|+++||++
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRF---APNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT 163 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH---CTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence 48999999999983 98877422 23789999999999976554 488999999999996 899999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy1416 129 NINVEEMFMAITNLVLRSK 147 (177)
Q Consensus 129 ~~~v~~~f~~~~~~~~~~~ 147 (177)
|.||+++|..+++.+.+..
T Consensus 164 g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 164 QQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp CTTHHHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHHhhhh
Confidence 9999999999999987654
No 57
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.52 E-value=1.9e-14 Score=105.36 Aligned_cols=84 Identities=19% Similarity=0.133 Sum_probs=72.2
Q ss_pred ccccc------hhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCC
Q psy1416 60 VCTVL------NECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNIN 131 (177)
Q Consensus 60 ~~dit------~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~ 131 (177)
+.|++ +.++|..+. |+.++. ....++|++|||||+||... +..+++..+++.+++ +|+++||++|.|
T Consensus 104 v~D~~~~~~~~~~~s~~~l~~~l~~~~---~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 178 (198)
T 3t1o_A 104 VADSAPNRLRANAESMRNMRENLAEYG---LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEGKFPVLEAVATEGKG 178 (198)
T ss_dssp EEECCGGGHHHHHHHHHHHHHHHHHTT---CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTTCCSCEEECBGGGTBT
T ss_pred EEECCcchhhHhHHHHHHHHHHHHhhc---cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhcCCceEEEEecCCCcC
Confidence 48888 788998887 987762 22358999999999999754 788999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1416 132 VEEMFMAITNLVLRSKK 148 (177)
Q Consensus 132 v~~~f~~~~~~~~~~~~ 148 (177)
|+++|..+++.+.++..
T Consensus 179 v~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 179 VFETLKEVSRLVLARVA 195 (198)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999987653
No 58
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.52 E-value=1.5e-14 Score=106.34 Aligned_cols=84 Identities=18% Similarity=0.248 Sum_probs=73.2
Q ss_pred ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcC--CCccCHHHHHHHHHHcCCc-EEEecCCCCCCHHH
Q psy1416 60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQ--KKVVLTEDAQRFANQMGIQ-LFETSAKDNINVEE 134 (177)
Q Consensus 60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~--~~~v~~~~~~~~a~~~~~~-~~e~Sak~~~~v~~ 134 (177)
+.|++++.||..+ . |+..+... .+++|++|||||+||.. .+.+..+++..+++.+++. |+++||++|.||++
T Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (194)
T 3reg_A 101 CFAVNNRTSFDNISTKWEPEIKHY---IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE 177 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH---CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence 5899999999997 4 98776422 35799999999999975 4788999999999999998 99999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1416 135 MFMAITNLVLRS 146 (177)
Q Consensus 135 ~f~~~~~~~~~~ 146 (177)
+|..+++.+.++
T Consensus 178 l~~~l~~~i~~~ 189 (194)
T 3reg_A 178 VFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
No 59
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=1.3e-14 Score=103.75 Aligned_cols=84 Identities=27% Similarity=0.244 Sum_probs=71.2
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|++++.||..+. |+..+.......+++|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 48999999999997 88766433333357899999999999887888999999999999999999999999999999999
Q ss_pred HHHHH
Q psy1416 139 ITNLV 143 (177)
Q Consensus 139 ~~~~~ 143 (177)
+++.+
T Consensus 161 l~~~~ 165 (172)
T 2erx_A 161 LLNLE 165 (172)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 98754
No 60
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.51 E-value=8.7e-15 Score=106.81 Aligned_cols=83 Identities=19% Similarity=0.198 Sum_probs=71.1
Q ss_pred ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcC------------CCccCHHHHHHHHHHcC-CcEEEe
Q psy1416 60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQ------------KKVVLTEDAQRFANQMG-IQLFET 124 (177)
Q Consensus 60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~------------~~~v~~~~~~~~a~~~~-~~~~e~ 124 (177)
++|++++.||.++ . |+..+... .+++|++|||||+||.. .+.|+.+++..+++.++ .+|+++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEF---CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH---CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHH---CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 5899999999998 5 98776422 24789999999999974 36789999999999988 689999
Q ss_pred cCC-CCCCHHHHHHHHHHHHHH
Q psy1416 125 SAK-DNINVEEMFMAITNLVLR 145 (177)
Q Consensus 125 Sak-~~~~v~~~f~~~~~~~~~ 145 (177)
||+ +|.||+++|..+++.+++
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHHT
T ss_pred eecCCCcCHHHHHHHHHHHHhc
Confidence 999 689999999999988764
No 61
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.51 E-value=1.2e-14 Score=104.73 Aligned_cols=83 Identities=28% Similarity=0.364 Sum_probs=72.6
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|++++.||..+. |+..+.... ..++|++||+||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 170 (179)
T 2y8e_A 93 VYDITNTNSFHQTSKWIDDVRTER--GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR 170 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHH--TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 58999999999997 988774322 247899999999999888889999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy1416 139 ITNLVL 144 (177)
Q Consensus 139 ~~~~~~ 144 (177)
+++.+.
T Consensus 171 l~~~~~ 176 (179)
T 2y8e_A 171 VAAALP 176 (179)
T ss_dssp HHHTCC
T ss_pred HHHHHh
Confidence 987654
No 62
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.50 E-value=5.4e-14 Score=101.57 Aligned_cols=87 Identities=31% Similarity=0.336 Sum_probs=72.6
Q ss_pred ccccchhhhhcccc-hhhhhhhhhc--cCCCCcEEEEeeCCCCc-CCCccCHHHHHHHHH-HcCCcEEEecCCCCCCHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYC--WLFPSGLRLVGNKNDDP-QKKVVLTEDAQRFAN-QMGIQLFETSAKDNINVEE 134 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~--~~~~~~~ilvgnK~Dl~-~~~~v~~~~~~~~a~-~~~~~~~e~Sak~~~~v~~ 134 (177)
+.|+++..||..+. |+..+..... ...++|++|||||+||. ..+.+..+++..+++ ..+.+|+++||++|.||++
T Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 167 (182)
T 1ky3_A 88 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT 167 (182)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHH
Confidence 58999999999997 9887642221 12578999999999994 456788999999998 4678999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1416 135 MFMAITNLVLRS 146 (177)
Q Consensus 135 ~f~~~~~~~~~~ 146 (177)
+|..+++.+.++
T Consensus 168 l~~~l~~~~~~~ 179 (182)
T 1ky3_A 168 AFEEIARSALQQ 179 (182)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988765
No 63
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.50 E-value=1.9e-14 Score=102.80 Aligned_cols=82 Identities=29% Similarity=0.420 Sum_probs=71.0
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCC---CccCHHHHHHHHHHcCCcEEEecCCCCCCHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQK---KVVLTEDAQRFANQMGIQLFETSAKDNINVEEM 135 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~---~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~ 135 (177)
+.|++++.||..+. |+..+.... ..++|++|||||+|+... +.+..+++..++..++++|+++||++|.||+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA--SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV 159 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhc--CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 48999999999997 987774222 357899999999999765 778899999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy1416 136 FMAITNLV 143 (177)
Q Consensus 136 f~~~~~~~ 143 (177)
|..+++.+
T Consensus 160 ~~~l~~~i 167 (170)
T 1ek0_A 160 FLGIGEKI 167 (170)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHHH
Confidence 99998654
No 64
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.50 E-value=4.1e-14 Score=104.43 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=73.3
Q ss_pred ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcC------------CCccCHHHHHHHHHHcCC-cEEEe
Q psy1416 60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQ------------KKVVLTEDAQRFANQMGI-QLFET 124 (177)
Q Consensus 60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~------------~~~v~~~~~~~~a~~~~~-~~~e~ 124 (177)
++|++++.||..+. |+..+... .+++|++|||||+||.. .+.+..+++..++..++. +|+++
T Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 174 (201)
T 2q3h_A 98 CFSVVSPSSFQNVSEKWVPEIRCH---CPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIEC 174 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH---CSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEE
Confidence 48999999999983 98776422 24789999999999975 467889999999999997 89999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHH
Q psy1416 125 SAKDNINVEEMFMAITNLVLRSK 147 (177)
Q Consensus 125 Sak~~~~v~~~f~~~~~~~~~~~ 147 (177)
||++|.||+++|..+++.+.+..
T Consensus 175 Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 175 SALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHhccc
Confidence 99999999999999999887653
No 65
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.50 E-value=7e-14 Score=102.27 Aligned_cols=85 Identities=24% Similarity=0.335 Sum_probs=73.0
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+.. .....++|++||+||+||. .+.+..+++..+++.+++.|+++||++|.||+++|..
T Consensus 94 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (195)
T 1x3s_A 94 VYDVTRRDTFVKLDNWLNELET-YCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE 171 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHTT-CCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHH-hcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 58999999999997 9887742 2223578999999999995 4678889999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy1416 139 ITNLVLRS 146 (177)
Q Consensus 139 ~~~~~~~~ 146 (177)
+++.+.+.
T Consensus 172 l~~~~~~~ 179 (195)
T 1x3s_A 172 LVEKIIQT 179 (195)
T ss_dssp HHHHHHTS
T ss_pred HHHHHHhh
Confidence 99988754
No 66
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.49 E-value=1.9e-14 Score=107.29 Aligned_cols=83 Identities=19% Similarity=0.198 Sum_probs=71.4
Q ss_pred ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcC------------CCccCHHHHHHHHHHcC-CcEEEe
Q psy1416 60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQ------------KKVVLTEDAQRFANQMG-IQLFET 124 (177)
Q Consensus 60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~------------~~~v~~~~~~~~a~~~~-~~~~e~ 124 (177)
++|++++.||.++ . |+..+... .+++|++|||||+||.. .+.|+.+++..+++.++ ..|+++
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 182 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEF---CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 182 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH---CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHH---CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 5899999999998 5 98777422 24789999999999974 36789999999999988 689999
Q ss_pred cCC-CCCCHHHHHHHHHHHHHH
Q psy1416 125 SAK-DNINVEEMFMAITNLVLR 145 (177)
Q Consensus 125 Sak-~~~~v~~~f~~~~~~~~~ 145 (177)
||+ +|.||+++|..+++.+++
T Consensus 183 SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 183 SALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHH
T ss_pred eeccCCcCHHHHHHHHHHHHhh
Confidence 999 689999999999998875
No 67
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.49 E-value=2.7e-14 Score=106.80 Aligned_cols=86 Identities=14% Similarity=0.145 Sum_probs=72.1
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+.... ..+.|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 168 (218)
T 4djt_A 91 FFDVTSRITCQNLARWVKEFQAVV--GNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLH 168 (218)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHH--CSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence 58999999999997 998774322 246899999999999988889999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 139 ITNLVLRSK 147 (177)
Q Consensus 139 ~~~~~~~~~ 147 (177)
+++.+.+..
T Consensus 169 l~~~~~~~~ 177 (218)
T 4djt_A 169 LARIFTGRP 177 (218)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHhccc
Confidence 999887653
No 68
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.48 E-value=8.8e-14 Score=103.30 Aligned_cols=85 Identities=29% Similarity=0.465 Sum_probs=73.4
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+.... ..++|++||+||+|| ..+.+..+++..++..++++|+++||++|.||+++|..
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 175 (213)
T 3cph_A 99 VYDVTDERTFTNIKQWFKTVNEHA--NDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT 175 (213)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHT--TTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 48999999999997 987774222 247899999999999 45678889999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 139 ITNLVLRSK 147 (177)
Q Consensus 139 ~~~~~~~~~ 147 (177)
+++.+.+..
T Consensus 176 l~~~~~~~~ 184 (213)
T 3cph_A 176 LAKLIQEKI 184 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887764
No 69
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.48 E-value=9e-14 Score=100.18 Aligned_cols=85 Identities=27% Similarity=0.255 Sum_probs=71.7
Q ss_pred ccccchhhhhcccc-hhhhhhhhhcc--CCCCcEEEEeeCCCCcCCCccCHHHHHHHHH-HcCCcEEEecCCCCCCHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCW--LFPSGLRLVGNKNDDPQKKVVLTEDAQRFAN-QMGIQLFETSAKDNINVEEM 135 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~--~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~-~~~~~~~e~Sak~~~~v~~~ 135 (177)
+.|+++..||..+. |+..+...... ..++|++|||||+|+. .+.+..+++..+++ ..+++|+++||++|.||+++
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (177)
T 1wms_A 86 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAA 164 (177)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHH
Confidence 58999999999997 98877422221 2578999999999997 56788999999998 56789999999999999999
Q ss_pred HHHHHHHHHH
Q psy1416 136 FMAITNLVLR 145 (177)
Q Consensus 136 f~~~~~~~~~ 145 (177)
|..+++.+.+
T Consensus 165 ~~~l~~~~~~ 174 (177)
T 1wms_A 165 FEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 70
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.48 E-value=5.1e-14 Score=105.38 Aligned_cols=84 Identities=21% Similarity=0.226 Sum_probs=72.6
Q ss_pred ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcCC-cEEEe
Q psy1416 60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMGI-QLFET 124 (177)
Q Consensus 60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~e~ 124 (177)
+.|+++..||..+. |+..+... .+++|++|||||+||... +.++.+++..+++.+++ +|+++
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHF---CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH---CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEECcCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 48999999999983 98776322 247899999999999764 37888999999999998 89999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHH
Q psy1416 125 SAKDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 125 Sak~~~~v~~~f~~~~~~~~~~ 146 (177)
||++|.||+++|..+++.+.+.
T Consensus 189 SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999998764
No 71
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.48 E-value=1.3e-13 Score=100.73 Aligned_cols=86 Identities=27% Similarity=0.292 Sum_probs=73.8
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+.. .....++|++||+||+||.. +.+..+++..+++.++++|+++||++|.||+++|..
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 176 (190)
T 3con_A 99 VFAINNSKSFADINLYREQIKR-VKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYT 176 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHH-HHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHH-HhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 48999999999997 9877642 22234789999999999976 667889999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 139 ITNLVLRSK 147 (177)
Q Consensus 139 ~~~~~~~~~ 147 (177)
+++.+.+.+
T Consensus 177 l~~~~~~~~ 185 (190)
T 3con_A 177 LVREIRQYR 185 (190)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999887653
No 72
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.48 E-value=1.2e-13 Score=97.99 Aligned_cols=83 Identities=27% Similarity=0.250 Sum_probs=71.5
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+.. .....++|++||+||+|+.. +.+..+++..+++.++++++++||++|.||+++|..
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~-~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 158 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKR-VKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYT 158 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHH-HHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHH-hcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 48899999999987 9887642 22234789999999999976 567889999999999999999999999999999999
Q ss_pred HHHHHH
Q psy1416 139 ITNLVL 144 (177)
Q Consensus 139 ~~~~~~ 144 (177)
+++.+.
T Consensus 159 l~~~~~ 164 (166)
T 2ce2_X 159 LVREIR 164 (166)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 73
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.45 E-value=4.4e-14 Score=102.28 Aligned_cols=82 Identities=22% Similarity=0.315 Sum_probs=70.0
Q ss_pred ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCCc----------cCHHHHHHHHHHcCC-cEEEecC
Q psy1416 60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKKV----------VLTEDAQRFANQMGI-QLFETSA 126 (177)
Q Consensus 60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~Sa 126 (177)
+.|++++.||.++. |+..+... .+++|++|||||+||...+. ++.+++..+++.++. +|+++||
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 162 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHY---APGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS 162 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH---CTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 48999999999984 98777422 23789999999999976554 588999999999996 8999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy1416 127 KDNINVEEMFMAITNLVL 144 (177)
Q Consensus 127 k~~~~v~~~f~~~~~~~~ 144 (177)
++|.||+++|..+++.++
T Consensus 163 ~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 163 KSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TTCTTHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998764
No 74
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.45 E-value=2.2e-13 Score=99.88 Aligned_cols=82 Identities=23% Similarity=0.304 Sum_probs=71.1
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+.... +.|++||+||+| ...+.+..+++..+++.++++|+++||++|.||+++|..
T Consensus 123 v~D~~~~~s~~~~~~~~~~i~~~~----~~piilv~NK~D-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 197 (208)
T 3clv_A 123 VFDISNSNTLDRAKTWVNQLKISS----NYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYM 197 (208)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS----CCEEEEEEECTT-CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhhC----CCcEEEEEECCC-cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence 58999999999987 988774221 389999999999 556788999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy1416 139 ITNLVLRS 146 (177)
Q Consensus 139 ~~~~~~~~ 146 (177)
+++.+.++
T Consensus 198 l~~~~~~~ 205 (208)
T 3clv_A 198 LAEEIYKN 205 (208)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988765
No 75
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.45 E-value=1.2e-13 Score=102.18 Aligned_cols=82 Identities=26% Similarity=0.268 Sum_probs=70.9
Q ss_pred ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcCC-cEEEe
Q psy1416 60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMGI-QLFET 124 (177)
Q Consensus 60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~e~ 124 (177)
+.|++++.||..+ . |+..+... .+++|++|||||+||... +.+..+++..+++.++. .|+++
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH---STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 4899999999999 4 88766422 247899999999999765 67889999999999998 89999
Q ss_pred cCCCCCCHHHHHHHHHHHHH
Q psy1416 125 SAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 125 Sak~~~~v~~~f~~~~~~~~ 144 (177)
||++|.||+++|..+++.++
T Consensus 180 SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998775
No 76
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.45 E-value=2.7e-15 Score=110.92 Aligned_cols=84 Identities=33% Similarity=0.411 Sum_probs=65.2
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
++|+++..||..+. |+..+... ...++|++|||||+||...+.+..+++..++..++++|+++||++|.||+++|..
T Consensus 112 v~d~~~~~s~~~~~~~~~~i~~~--~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~ 189 (199)
T 3l0i_B 112 VYDVTDQESFNNVKQWLQEIDRY--ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 189 (199)
T ss_dssp CC-CCCSHHHHHHHHHHHHHHSC--C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--ccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 58999999999997 98877322 2247899999999999988888888899999999999999999999999999999
Q ss_pred HHHHHHH
Q psy1416 139 ITNLVLR 145 (177)
Q Consensus 139 ~~~~~~~ 145 (177)
+++.+.+
T Consensus 190 l~~~l~~ 196 (199)
T 3l0i_B 190 MAAEIKK 196 (199)
T ss_dssp HTTTTTT
T ss_pred HHHHHHH
Confidence 9876643
No 77
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=2.7e-13 Score=100.77 Aligned_cols=84 Identities=24% Similarity=0.247 Sum_probs=72.1
Q ss_pred ccccchhhhhccc-c-hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcCC-cEEEe
Q psy1416 60 VCTVLNECAWLGC-G-WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMGI-QLFET 124 (177)
Q Consensus 60 ~~dit~~~Sf~~~-~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~e~ 124 (177)
+.|++++.||..+ . |+..+... .+++|++|||||+||... +.+..+++..++..++. .|+++
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHF---CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC 179 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH---STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 4899999999999 4 98776421 247899999999999764 56889999999999998 89999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHH
Q psy1416 125 SAKDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 125 Sak~~~~v~~~f~~~~~~~~~~ 146 (177)
||++|.||+++|..+++.+++.
T Consensus 180 SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 180 SAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp CTTTCTTHHHHHHHHHHHHHSC
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988753
No 78
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.43 E-value=1.6e-13 Score=99.56 Aligned_cols=83 Identities=17% Similarity=0.217 Sum_probs=71.1
Q ss_pred ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcCC-cEEEe
Q psy1416 60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMGI-QLFET 124 (177)
Q Consensus 60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~e~ 124 (177)
+.|++++.||..+. |+..+... .+++|++|||||+||... +.++.+++..+++.++. +|+++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 159 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHH---CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 159 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH---STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEECCChhhHHHHHHHHHHHHHHh---CCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEe
Confidence 58999999999984 88776422 237899999999999753 67889999999999997 89999
Q ss_pred cCCCCCCHHHHHHHHHHHHHH
Q psy1416 125 SAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 125 Sak~~~~v~~~f~~~~~~~~~ 145 (177)
||++|.||+++|..+++.+.+
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 160 SALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp CTTTCTTHHHHHHHHHHHHSC
T ss_pred cCCCccCHHHHHHHHHHHHhc
Confidence 999999999999999988754
No 79
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.42 E-value=7.4e-14 Score=107.64 Aligned_cols=82 Identities=22% Similarity=0.208 Sum_probs=66.0
Q ss_pred ccccchh--hhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHH-cCCcEEEecCCCCCCHHHH
Q psy1416 60 VCTVLNE--CAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ-MGIQLFETSAKDNINVEEM 135 (177)
Q Consensus 60 ~~dit~~--~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~-~~~~~~e~Sak~~~~v~~~ 135 (177)
+.|++++ .||..+. |+..+..... ..++|++|||||+||...+.+ +++..++.. .+++|+++||++|.||+++
T Consensus 169 V~D~t~~~~~s~~~~~~~l~~i~~~~~-~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~el 245 (255)
T 3c5h_A 169 GIDVSRGMNRNFDDQLKFVSNLYNQLA-KTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLA 245 (255)
T ss_dssp EEECBC----CHHHHHHHHHHHHHHHH-HTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHH
T ss_pred EEECCCCchhhHHHHHHHHHHHHHHhc-cCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHH
Confidence 5899998 9999997 9987743211 247899999999999876665 678888887 4889999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 136 FMAITNLVL 144 (177)
Q Consensus 136 f~~~~~~~~ 144 (177)
|..+++.+.
T Consensus 246 f~~l~~~l~ 254 (255)
T 3c5h_A 246 FSTLVQLID 254 (255)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998763
No 80
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.40 E-value=3.8e-14 Score=100.91 Aligned_cols=83 Identities=13% Similarity=-0.055 Sum_probs=59.5
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHH-----HHHHcCCcEEEecCCCCCCHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQR-----FANQMGIQLFETSAKDNINVE 133 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~-----~a~~~~~~~~e~Sak~~~~v~ 133 (177)
+.|+++++||..+. |+..+... ....++|++|||||+||.... ..++... ++...+++|+++||++|.||+
T Consensus 74 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 150 (164)
T 1r8s_A 74 VVDSNDRERVNEAREELMRMLAE-DELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 150 (164)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhc-hhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHH
Confidence 58999999999987 88766322 222578999999999997542 2222221 112234579999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1416 134 EMFMAITNLVLR 145 (177)
Q Consensus 134 ~~f~~~~~~~~~ 145 (177)
++|..+++.+.+
T Consensus 151 ~l~~~l~~~i~~ 162 (164)
T 1r8s_A 151 EGLDWLSNQLRN 162 (164)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHhh
Confidence 999999987754
No 81
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.40 E-value=1.1e-13 Score=102.92 Aligned_cols=81 Identities=17% Similarity=0.219 Sum_probs=68.7
Q ss_pred ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCC------------ccCHHHHHHHHHHcCCc-EEEe
Q psy1416 60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKK------------VVLTEDAQRFANQMGIQ-LFET 124 (177)
Q Consensus 60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~------------~v~~~~~~~~a~~~~~~-~~e~ 124 (177)
+.|+++..||..+. |+..+.... +++|++|||||+||...+ .+..+++..+++.++.. |+++
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (204)
T 4gzl_A 108 CFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence 58999999999984 887764222 578999999999997653 38889999999999964 9999
Q ss_pred cCCCCCCHHHHHHHHHHHH
Q psy1416 125 SAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 125 Sak~~~~v~~~f~~~~~~~ 143 (177)
||++|.||+++|..+++.+
T Consensus 185 SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CTTTCTTHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998754
No 82
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.40 E-value=1.5e-13 Score=100.94 Aligned_cols=88 Identities=11% Similarity=-0.038 Sum_probs=64.4
Q ss_pred ccccchhhhhcccc-hhhhhhhhhcc------CCCCcEEEEeeCCCCcCCCc---cCHHHHHHH-HHHcCCcEEEecCCC
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCW------LFPSGLRLVGNKNDDPQKKV---VLTEDAQRF-ANQMGIQLFETSAKD 128 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~------~~~~~~ilvgnK~Dl~~~~~---v~~~~~~~~-a~~~~~~~~e~Sak~ 128 (177)
+.|+++..||..+. |+..+...... ..++|++|||||+||...+. +....+... ++..++.|+++||++
T Consensus 93 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 172 (199)
T 4bas_A 93 VVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLK 172 (199)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTT
T ss_pred EEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCC
Confidence 58999999999996 88766322111 13789999999999976532 111111111 245678899999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy1416 129 NINVEEMFMAITNLVLRSK 147 (177)
Q Consensus 129 ~~~v~~~f~~~~~~~~~~~ 147 (177)
|.||+++|..|++.+.+..
T Consensus 173 g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 173 GTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp TBTHHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 83
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.39 E-value=2.3e-13 Score=100.67 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=64.1
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHH-----------------cCCcE
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ-----------------MGIQL 121 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~-----------------~~~~~ 121 (177)
+.|+++++||..+. |+..+.... ...++|++|||||+||.. .++.+++..++.. .+++|
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 48999999999997 987663221 224789999999999975 5778888877663 34579
Q ss_pred EEecCCCCCCHHHHHHHHHHH
Q psy1416 122 FETSAKDNINVEEMFMAITNL 142 (177)
Q Consensus 122 ~e~Sak~~~~v~~~f~~~~~~ 142 (177)
+++||++|.||+++|..+++.
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999998764
No 84
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.39 E-value=9.4e-13 Score=99.37 Aligned_cols=87 Identities=11% Similarity=0.104 Sum_probs=66.3
Q ss_pred ccccchhhhhcccc---hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHH---HHHHHHHHcC--CcEEEecCCCCCC
Q psy1416 60 VCTVLNECAWLGCG---WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTE---DAQRFANQMG--IQLFETSAKDNIN 131 (177)
Q Consensus 60 ~~dit~~~Sf~~~~---w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~---~~~~~a~~~~--~~~~e~Sak~~~~ 131 (177)
+.|+++..||.... |+..+. ...+++|++|||||+||...+.+..+ .+..++...+ +.|+++||++|.|
T Consensus 115 v~d~~~~~s~~~~~~~~~~~~l~---~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 191 (228)
T 2qu8_A 115 IIDISEQCGLTIKEQINLFYSIK---SVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVG 191 (228)
T ss_dssp EEETTCTTSSCHHHHHHHHHHHH---TCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTT
T ss_pred EEecccccCcchHHHHHHHHHHH---HhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCC
Confidence 48899999987432 554442 22247899999999999877777764 5667777777 8999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1416 132 VEEMFMAITNLVLRSKKE 149 (177)
Q Consensus 132 v~~~f~~~~~~~~~~~~~ 149 (177)
|+++|..+++.+.+....
T Consensus 192 i~~l~~~l~~~i~~~~~~ 209 (228)
T 2qu8_A 192 VEQAKITACELLKNDQAE 209 (228)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998876543
No 85
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.37 E-value=3e-13 Score=99.41 Aligned_cols=80 Identities=15% Similarity=0.092 Sum_probs=63.1
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHH------------cCCcEEEecC
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ------------MGIQLFETSA 126 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~------------~~~~~~e~Sa 126 (177)
+.|++++.||..+. |+..+... ....++|++|||||+||.. .++.+++.++... .+++|+++||
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNI-AELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTC-GGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEECCChHHHHHHHHHHHHHHcc-hhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 48999999999997 88766322 1225789999999999975 5677777766543 3467999999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy1416 127 KDNINVEEMFMAITNL 142 (177)
Q Consensus 127 k~~~~v~~~f~~~~~~ 142 (177)
++|.||+++|..+++.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999998753
No 86
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.35 E-value=1.7e-13 Score=101.08 Aligned_cols=80 Identities=13% Similarity=0.088 Sum_probs=64.4
Q ss_pred ccccchh--hhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcC-------CCccCHHHHHHHHH----HcCCcEEEec
Q psy1416 60 VCTVLNE--CAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQ-------KKVVLTEDAQRFAN----QMGIQLFETS 125 (177)
Q Consensus 60 ~~dit~~--~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~-------~~~v~~~~~~~~a~----~~~~~~~e~S 125 (177)
++|++++ +++..+. |+..+. ...+++|++|||||+||.. .+.|..+++..+++ .+++.|++||
T Consensus 102 v~d~~~~~~~~~~~~~~~l~~~~---~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~S 178 (196)
T 3llu_A 102 VIDAQDDYMEALTRLHITVSKAY---KVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTS 178 (196)
T ss_dssp EEETTSCCHHHHHHHHHHHHHHH---HHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEEC
T ss_pred EEECCCchHHHHHHHHHHHHHHH---hcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEE
Confidence 4888887 6666665 776542 1235899999999999754 46777888899999 7788999999
Q ss_pred CCCCCCHHHHHHHHHHHH
Q psy1416 126 AKDNINVEEMFMAITNLV 143 (177)
Q Consensus 126 ak~~~~v~~~f~~~~~~~ 143 (177)
|++ .||+++|..+++.+
T Consensus 179 a~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 179 IYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TTS-THHHHHHHHHHHHT
T ss_pred ech-hhHHHHHHHHHHHh
Confidence 999 99999999999865
No 87
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.34 E-value=3.1e-13 Score=101.33 Aligned_cols=82 Identities=22% Similarity=0.301 Sum_probs=69.3
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||..+. |+..+... ..++|++|||||+||.+.+. . .++..++..+++.|+++||++|.||+++|..
T Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 168 (221)
T 3gj0_A 94 MFDVTSRVTYKNVPNWHRDLVRV---CENIPIVLCGNKVDIKDRKV-K-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 168 (221)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH---STTCCEEEEEECTTSSSCSS-C-GGGCCHHHHHTCEEEECBGGGTBTTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHh---CCCCCEEEEEECCccccccc-c-HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 58999999999997 99877432 24789999999999976543 2 3667788999999999999999999999999
Q ss_pred HHHHHHHH
Q psy1416 139 ITNLVLRS 146 (177)
Q Consensus 139 ~~~~~~~~ 146 (177)
+++.+...
T Consensus 169 l~~~l~~~ 176 (221)
T 3gj0_A 169 LARKLIGD 176 (221)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhC
Confidence 99988764
No 88
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.34 E-value=1.8e-13 Score=99.96 Aligned_cols=84 Identities=17% Similarity=0.134 Sum_probs=66.1
Q ss_pred ccccchh-hhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccC---HHHHHHHHHHcCCc----EEEecCCCCC
Q psy1416 60 VCTVLNE-CAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVL---TEDAQRFANQMGIQ----LFETSAKDNI 130 (177)
Q Consensus 60 ~~dit~~-~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~---~~~~~~~a~~~~~~----~~e~Sak~~~ 130 (177)
++|+++. .||..+. |+..+... .+++|++|||||+||...+.+. .+.+..+++.++++ |+++||++|.
T Consensus 86 v~d~~~~~~s~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (184)
T 2zej_A 86 VYDLSKGQAEVDAMKPWLFNIKAR---ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEES 162 (184)
T ss_dssp EEEGGGCHHHHHTHHHHHHHHHHH---CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCC
T ss_pred EEeCCcchhHHHHHHHHHHHHHhh---CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCc
Confidence 4799997 5899997 99876322 2478999999999998665543 34566777777886 9999999997
Q ss_pred -CHHHHHHHHHHHHHHH
Q psy1416 131 -NVEEMFMAITNLVLRS 146 (177)
Q Consensus 131 -~v~~~f~~~~~~~~~~ 146 (177)
+++++|..+.+.+.+.
T Consensus 163 ~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 163 DALAKLRKTIINESLNF 179 (184)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHhcc
Confidence 9999999998877654
No 89
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.34 E-value=2.2e-13 Score=97.43 Aligned_cols=85 Identities=15% Similarity=-0.010 Sum_probs=61.2
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCc---cCHHHHHHHHHHcCCcEEEecCCCCCCHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKV---VLTEDAQRFANQMGIQLFETSAKDNINVEEM 135 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~---v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~ 135 (177)
+.|+++..||..+. |+..+.... ...++|++||+||+||...+. +....+..++...+++|+++||++|.||+++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (171)
T 1upt_A 81 VVDSCDRDRIGISKSELVAMLEEE-ELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA 159 (171)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhch-hhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHH
Confidence 48999999999987 876653221 124789999999999976532 1111111223334568999999999999999
Q ss_pred HHHHHHHHHH
Q psy1416 136 FMAITNLVLR 145 (177)
Q Consensus 136 f~~~~~~~~~ 145 (177)
|..+++.+.+
T Consensus 160 ~~~l~~~i~~ 169 (171)
T 1upt_A 160 MEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 90
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.34 E-value=1.1e-12 Score=103.57 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=71.4
Q ss_pred ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCC------------CccCHHHHHHHHHHcCC-cEEEe
Q psy1416 60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQK------------KVVLTEDAQRFANQMGI-QLFET 124 (177)
Q Consensus 60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~e~ 124 (177)
+.|++++.||..+. |+..+... .+++|++|||||+||... +.++.+++..+++.+++ +|+++
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 309 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHH---CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 309 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH---CTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhh---CCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence 48999999999984 98776422 237899999999999653 67899999999999997 89999
Q ss_pred cCCCCCCHHHHHHHHHHHHHH
Q psy1416 125 SAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 125 Sak~~~~v~~~f~~~~~~~~~ 145 (177)
||++|.||+++|..+++.++.
T Consensus 310 Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 310 SALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred cCCCCcCHHHHHHHHHHHHhc
Confidence 999999999999999988764
No 91
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.02 E-value=1e-13 Score=102.73 Aligned_cols=81 Identities=17% Similarity=0.227 Sum_probs=68.2
Q ss_pred ccccchhhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCC------------ccCHHHHHHHHHHcCC-cEEEe
Q psy1416 60 VCTVLNECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKK------------VVLTEDAQRFANQMGI-QLFET 124 (177)
Q Consensus 60 ~~dit~~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~------------~v~~~~~~~~a~~~~~-~~~e~ 124 (177)
+.|++++.||..+. |+..+... .+++|++|||||+||...+ .+..+++..+++.+++ +|+++
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~---~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v 184 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHH---CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
Confidence 58999999999984 88766322 1378999999999997543 6778889999999998 89999
Q ss_pred cCCCCCCHHHHHHHHHHHH
Q psy1416 125 SAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 125 Sak~~~~v~~~f~~~~~~~ 143 (177)
||++|.||+++|..+++.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999998765
No 92
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.33 E-value=1.2e-13 Score=101.61 Aligned_cols=82 Identities=11% Similarity=-0.052 Sum_probs=59.6
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHH-----HHHHcCCcEEEecCCCCCCHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQR-----FANQMGIQLFETSAKDNINVE 133 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~-----~a~~~~~~~~e~Sak~~~~v~ 133 (177)
+.|+++++||..+. |+..+... ....++|++|||||+||.... ..++... ++...+++|+++||++|.||+
T Consensus 103 v~D~~~~~s~~~~~~~l~~~~~~-~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 103 VVDSNDRERVQESADELQKMLQE-DELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEECCCHHHHHHHHHHHHHHhcc-cccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 58999999999997 88766322 222478999999999997542 2222221 112234579999999999999
Q ss_pred HHHHHHHHHHH
Q psy1416 134 EMFMAITNLVL 144 (177)
Q Consensus 134 ~~f~~~~~~~~ 144 (177)
++|..+++.+.
T Consensus 180 ~l~~~l~~~i~ 190 (192)
T 2b6h_A 180 DGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 93
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.33 E-value=2.4e-13 Score=99.07 Aligned_cols=84 Identities=14% Similarity=-0.057 Sum_probs=60.0
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHH-----HHcCCcEEEecCCCCCCHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFA-----NQMGIQLFETSAKDNINVE 133 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a-----~~~~~~~~e~Sak~~~~v~ 133 (177)
+.|+++++||..+. |+..+.... ...++|++|||||+||...+. .++..... ...++.|+++||++|.||+
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 90 VIDSADRKRFEETGQELTELLEEE-KLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEETTCGGGHHHHHHHHHHHTTCG-GGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEECcCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 58999999999987 887653221 224789999999999976543 23332221 1234679999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1416 134 EMFMAITNLVLRS 146 (177)
Q Consensus 134 ~~f~~~~~~~~~~ 146 (177)
++|..+++.+.++
T Consensus 167 ~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 167 DGMNWVCKNVNAK 179 (181)
T ss_dssp HHHHHHHHTC---
T ss_pred HHHHHHHHHHHhc
Confidence 9999999877543
No 94
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.31 E-value=3.8e-13 Score=98.24 Aligned_cols=84 Identities=13% Similarity=-0.061 Sum_probs=61.7
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHH-----HHHHcCCcEEEecCCCCCCHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQR-----FANQMGIQLFETSAKDNINVE 133 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~-----~a~~~~~~~~e~Sak~~~~v~ 133 (177)
+.|+++++||..+. |+..+... ....+.|++|||||+||.... ..++... ++...+++|+++||++|.||+
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 96 VVDSTDRDRMGVAKHELYALLDE-DELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTC-STTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHhh-hhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 58999999999987 87665321 222478999999999997643 2222221 222345679999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1416 134 EMFMAITNLVLRS 146 (177)
Q Consensus 134 ~~f~~~~~~~~~~ 146 (177)
++|..+++.+.+.
T Consensus 173 ~l~~~l~~~i~~~ 185 (189)
T 2x77_A 173 EGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 95
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.31 E-value=7.6e-12 Score=92.32 Aligned_cols=86 Identities=29% Similarity=0.334 Sum_probs=73.9
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||.++. |+..+... .....|+++||||+||...+.+..+++..++...++.|+++||+++.+++++|..
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~ 161 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDH--ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN 161 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHh--cCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 38889999999986 98766321 2246899999999999887888889999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 139 ITNLVLRSK 147 (177)
Q Consensus 139 ~~~~~~~~~ 147 (177)
+.+.+.+..
T Consensus 162 l~~~~~~~~ 170 (199)
T 2f9l_A 162 ILTEIYRIV 170 (199)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987653
No 96
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.30 E-value=1.7e-13 Score=109.08 Aligned_cols=87 Identities=13% Similarity=0.128 Sum_probs=66.4
Q ss_pred ccccchhhhhcccchhhh-hhhhhccCCCCcEEEEeeCCCCcCC-------CccCHHHHHHHHHH----cCCcEEEecCC
Q psy1416 60 VCTVLNECAWLGCGWMTI-CPIIYCWLFPSGLRLVGNKNDDPQK-------KVVLTEDAQRFANQ----MGIQLFETSAK 127 (177)
Q Consensus 60 ~~dit~~~Sf~~~~w~~~-~~~~~~~~~~~~~ilvgnK~Dl~~~-------~~v~~~~~~~~a~~----~~~~~~e~Sak 127 (177)
+.|+|++ ++....|+.. +.......+++|++|||||+||..+ |.|..+++.++|+. +++.||||||+
T Consensus 79 V~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 79 VIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp ECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 3799998 4455554432 2222222358999999999999763 67888999999996 68999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q psy1416 128 DNINVEEMFMAITNLVLRSKK 148 (177)
Q Consensus 128 ~~~~v~~~f~~~~~~~~~~~~ 148 (177)
+ .+|+++|..+++.++....
T Consensus 158 d-~nV~eAFs~iv~~li~~~~ 177 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLIPELS 177 (331)
T ss_dssp S-SHHHHHHHHHHTTSSTTHH
T ss_pred C-CcHHHHHHHHHHHHHhhHH
Confidence 8 5999999999998876543
No 97
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.27 E-value=5.2e-12 Score=91.81 Aligned_cols=84 Identities=13% Similarity=0.009 Sum_probs=62.8
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHH-----HcCCcEEEecCCCCCCHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFAN-----QMGIQLFETSAKDNINVE 133 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~Sak~~~~v~ 133 (177)
+.|++++.||..+. |+..+... ....++|++|||||+||...+ ..++...... ..+++|+++||++|.||+
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 92 VVDSADRQRMQDCQRELQSLLVE-ERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEECcCHHHHHHHHHHHHHHHhC-hhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 58999999999987 88765322 122478999999999997653 3333333221 345689999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1416 134 EMFMAITNLVLRS 146 (177)
Q Consensus 134 ~~f~~~~~~~~~~ 146 (177)
++|..+++.+.++
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887654
No 98
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.27 E-value=2.5e-12 Score=101.53 Aligned_cols=76 Identities=17% Similarity=0.108 Sum_probs=62.6
Q ss_pred ccccchhh-hhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC--CcEEEecCCCCCCHHHH
Q psy1416 60 VCTVLNEC-AWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG--IQLFETSAKDNINVEEM 135 (177)
Q Consensus 60 ~~dit~~~-Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~--~~~~e~Sak~~~~v~~~ 135 (177)
++|++++. ||..+. |+..+.. .++|++|||||+||.+.+.+ +++..+++.++ +.|++|||++|.||+++
T Consensus 91 V~D~~~~~~s~~~l~~~l~~~~~-----~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~l 163 (301)
T 1u0l_A 91 VVTVKMPETSTYIIDKFLVLAEK-----NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEEL 163 (301)
T ss_dssp EECSSTTCCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHH
Confidence 58999998 788887 9876632 37899999999999765544 56778888888 89999999999999999
Q ss_pred HHHHHHH
Q psy1416 136 FMAITNL 142 (177)
Q Consensus 136 f~~~~~~ 142 (177)
|..+...
T Consensus 164 f~~l~ge 170 (301)
T 1u0l_A 164 KEYLKGK 170 (301)
T ss_dssp HHHHSSS
T ss_pred HHHhcCC
Confidence 9877643
No 99
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.26 E-value=4.7e-12 Score=92.29 Aligned_cols=83 Identities=11% Similarity=-0.036 Sum_probs=63.2
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHH-----HcCCcEEEecCCCCCCHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFAN-----QMGIQLFETSAKDNINVE 133 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~Sak~~~~v~ 133 (177)
+.|+++.+||..+. |+..+... ....+.|++|||||+||... +..++...... ..++.|+++||++|.||+
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 90 VVDSTDRERISVTREELYKMLAH-EDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTS-GGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHhc-hhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 58999999999997 88776322 11247899999999999753 34455544432 345689999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1416 134 EMFMAITNLVLR 145 (177)
Q Consensus 134 ~~f~~~~~~~~~ 145 (177)
++|..+++.+..
T Consensus 167 ~l~~~l~~~~~~ 178 (187)
T 1zj6_A 167 QGLEWMMSRLKI 178 (187)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
No 100
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.26 E-value=5.8e-12 Score=91.57 Aligned_cols=85 Identities=16% Similarity=0.089 Sum_probs=66.4
Q ss_pred cccccchhhhhccc-c-hhhh--------hhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCc-------E
Q psy1416 59 KVCTVLNECAWLGC-G-WMTI--------CPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ-------L 121 (177)
Q Consensus 59 ~~~dit~~~Sf~~~-~-w~~~--------~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~-------~ 121 (177)
.+.+++|..||.++ . |... +. ......++|++|||||+|+...+ .+++..+++.++.+ |
T Consensus 85 ~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~ 160 (190)
T 2cxx_A 85 VAVLVVDGKAAPEIIKRWEKRGEIPIDVEFY-QFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVF 160 (190)
T ss_dssp EEEEEEETTHHHHHHHHHHHTTCCCHHHHHH-HHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHE
T ss_pred EEEEEEcchhhhhHHHhhhccCccHHHHHHH-HHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcE
Confidence 35788999999887 4 8753 11 11112478999999999998655 56788899998874 6
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHH
Q psy1416 122 FETSAKDNINVEEMFMAITNLVLRSK 147 (177)
Q Consensus 122 ~e~Sak~~~~v~~~f~~~~~~~~~~~ 147 (177)
+++||++|.||+++|..+++.+.+..
T Consensus 161 ~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 161 IPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred EEEecCCCCCHHHHHHHHHHhcchhh
Confidence 99999999999999999999887643
No 101
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.25 E-value=6.9e-12 Score=91.63 Aligned_cols=84 Identities=8% Similarity=-0.071 Sum_probs=63.2
Q ss_pred ccccchhhhhcccc-hhhhhhhhhcc-CCCCcEEEEeeCCCCcCCCccCHHHHHHHHH-----HcCCcEEEecCCCCCCH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCW-LFPSGLRLVGNKNDDPQKKVVLTEDAQRFAN-----QMGIQLFETSAKDNINV 132 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~Sak~~~~v 132 (177)
+.|+++..||..+. |+..+...... ..++|++|||||+||... +..++...++. ..++.|+++||++|.||
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 174 (190)
T 2h57_A 97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKGEGL 174 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTH
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCCcCH
Confidence 48999999999997 88766322111 147899999999999753 45666666653 23568999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1416 133 EEMFMAITNLVLR 145 (177)
Q Consensus 133 ~~~f~~~~~~~~~ 145 (177)
+++|..+++.+.+
T Consensus 175 ~~l~~~l~~~i~~ 187 (190)
T 2h57_A 175 QEGVDWLQDQIQT 187 (190)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987643
No 102
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.25 E-value=1.2e-12 Score=94.83 Aligned_cols=84 Identities=13% Similarity=0.088 Sum_probs=62.7
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHH-----cCCcEEEecCCCCCCHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ-----MGIQLFETSAKDNINVE 133 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~-----~~~~~~e~Sak~~~~v~ 133 (177)
+.|+++..||..+. |+..+.. .....+.|++||+||+||... ...++....... .+++|+++||++|.||+
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 92 VVDSTDKDRMSTASKELHLMLQ-EEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEETTCTTTHHHHHHHHHHHTT-SSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHc-ChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 58999999999987 8876632 211357899999999999753 344444433322 23479999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1416 134 EMFMAITNLVLRS 146 (177)
Q Consensus 134 ~~f~~~~~~~~~~ 146 (177)
++|..+++.+.++
T Consensus 169 ~l~~~l~~~~~~~ 181 (183)
T 1moz_A 169 EGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 103
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.24 E-value=7.4e-13 Score=96.88 Aligned_cols=83 Identities=12% Similarity=-0.005 Sum_probs=59.5
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHH-----HHcCCcEEEecCCCCCCHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFA-----NQMGIQLFETSAKDNINVE 133 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a-----~~~~~~~~e~Sak~~~~v~ 133 (177)
+.|+++.+||..+. |+..+... ....++|++|||||+||.... ..++..... ...++.|+++||++|.||+
T Consensus 97 v~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 173 (188)
T 1zd9_A 97 MVDAADQEKIEASKNELHNLLDK-PQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNID 173 (188)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTC-GGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhC-cccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence 58999999999997 88766322 112478999999999997542 222222211 1234579999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1416 134 EMFMAITNLVLR 145 (177)
Q Consensus 134 ~~f~~~~~~~~~ 145 (177)
++|..+++.+.+
T Consensus 174 ~l~~~l~~~~~~ 185 (188)
T 1zd9_A 174 ITLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999887643
No 104
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.24 E-value=1.6e-11 Score=90.23 Aligned_cols=82 Identities=29% Similarity=0.362 Sum_probs=70.4
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|+++..||.++. |+..+... ...+.|+++|+||+||.+.+.+..+++..++...++.|+++||+++.+++++|..
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~ 185 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDH--ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQT 185 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 47889999999987 98765321 2246899999999999887788899999999999999999999999999999999
Q ss_pred HHHHH
Q psy1416 139 ITNLV 143 (177)
Q Consensus 139 ~~~~~ 143 (177)
+.+.+
T Consensus 186 l~~~i 190 (191)
T 1oix_A 186 ILTEI 190 (191)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98765
No 105
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.22 E-value=6.7e-12 Score=91.10 Aligned_cols=80 Identities=11% Similarity=-0.025 Sum_probs=59.5
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHH-----HHcCCcEEEecCCCCCCHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFA-----NQMGIQLFETSAKDNINVE 133 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a-----~~~~~~~~e~Sak~~~~v~ 133 (177)
+.|+++..||..+. |+..+.... ...++|++|||||+||... +..++...+. ...++.|+++||++|.||+
T Consensus 95 v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 171 (181)
T 2h17_A 95 VVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 171 (181)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhCh-hhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 58999999999987 876653221 1247899999999999753 3344444433 2235689999999999999
Q ss_pred HHHHHHHHH
Q psy1416 134 EMFMAITNL 142 (177)
Q Consensus 134 ~~f~~~~~~ 142 (177)
++|..+++.
T Consensus 172 ~l~~~l~~~ 180 (181)
T 2h17_A 172 QGLEWMMSR 180 (181)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 999998754
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.20 E-value=4.1e-12 Score=100.44 Aligned_cols=85 Identities=14% Similarity=0.106 Sum_probs=69.9
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcC--CCc----cCHHHHHHHHHHcC---CcEEEecCCCC
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQ--KKV----VLTEDAQRFANQMG---IQLFETSAKDN 129 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~--~~~----v~~~~~~~~a~~~~---~~~~e~Sak~~ 129 (177)
++|++++.||.++. |...+.......+++|++|||||+||.. .|. +..+++..+++.+| ++|++|||++
T Consensus 87 V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~- 165 (307)
T 3r7w_A 87 VFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD- 165 (307)
T ss_dssp EEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-
T ss_pred EEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-
Confidence 58999999999996 7655533333345799999999999986 565 77789999999997 7899999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy1416 130 INVEEMFMAITNLVLR 145 (177)
Q Consensus 130 ~~v~~~f~~~~~~~~~ 145 (177)
.++.++|..+++.++.
T Consensus 166 ~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 166 ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp SHHHHHHHHHHHTTCS
T ss_pred ChHHHHHHHHHHHHcC
Confidence 8999999999987644
No 107
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.19 E-value=2.7e-12 Score=92.01 Aligned_cols=74 Identities=19% Similarity=0.123 Sum_probs=57.0
Q ss_pred cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q psy1416 61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139 (177)
Q Consensus 61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~ 139 (177)
.|+++. .... |+..+.. .+.|++|||||+|+...+.+.. ++..+++.++++|+++||++|.||+++|..+
T Consensus 89 ~D~~~~---~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l 159 (165)
T 2wji_A 89 VDATAL---ERNLYLTLQLME-----MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAI 159 (165)
T ss_dssp EETTCH---HHHHHHHHHHHH-----TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHH
T ss_pred ecCCch---hHhHHHHHHHHh-----cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHH
Confidence 444443 3333 7765532 2689999999999976555553 4778899999999999999999999999999
Q ss_pred HHHH
Q psy1416 140 TNLV 143 (177)
Q Consensus 140 ~~~~ 143 (177)
++.+
T Consensus 160 ~~~~ 163 (165)
T 2wji_A 160 SIAV 163 (165)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8764
No 108
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.18 E-value=4.3e-12 Score=102.26 Aligned_cols=86 Identities=20% Similarity=0.183 Sum_probs=67.3
Q ss_pred ccccch----------hhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCC---------------ccCHHHHHHH
Q psy1416 60 VCTVLN----------ECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKK---------------VVLTEDAQRF 113 (177)
Q Consensus 60 ~~dit~----------~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~---------------~v~~~~~~~~ 113 (177)
+.|+++ ..+|.... |+..+.. .....++|++|||||+||..++ .++.+++..+
T Consensus 223 V~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~-~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~ 301 (353)
T 1cip_A 223 CVALSDYDLVLAEDEEMNRMHESMKLFDSICN-NKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAY 301 (353)
T ss_dssp EEEGGGGGCEETTEEEEEHHHHHHHHHHHHHT-CGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHH
T ss_pred EEECccccccccccchhhhHHHHHHHHHHHHc-CccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHH
Confidence 488888 45677765 7776632 2223579999999999995332 3788999999
Q ss_pred HH-----------HcCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416 114 AN-----------QMGIQLFETSAKDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 114 a~-----------~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~ 146 (177)
+. ..++.|++|||++|.||+++|..+++.+++.
T Consensus 302 ~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 302 IQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 87 3567899999999999999999999988764
No 109
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.17 E-value=3.9e-12 Score=101.57 Aligned_cols=83 Identities=13% Similarity=-0.054 Sum_probs=59.8
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHH-----HHHcCCcEEEecCCCCCCHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRF-----ANQMGIQLFETSAKDNINVE 133 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~-----a~~~~~~~~e~Sak~~~~v~ 133 (177)
+.|++++.||..+. |+..+... ....++|++|||||+||.+... .++.... +...+++|+++||++|.||+
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~ 315 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAE-DELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLY 315 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEECCchHHHHHHHHHHHHHHhh-hccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence 48999999999997 76554322 2235799999999999976432 2222221 11234569999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1416 134 EMFMAITNLVLR 145 (177)
Q Consensus 134 ~~f~~~~~~~~~ 145 (177)
++|..|++.+.+
T Consensus 316 el~~~l~~~l~~ 327 (329)
T 3o47_A 316 EGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 110
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.15 E-value=1.1e-11 Score=99.82 Aligned_cols=87 Identities=20% Similarity=0.169 Sum_probs=64.8
Q ss_pred ccccc----------hhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCc--c-------------------CH
Q psy1416 60 VCTVL----------NECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKV--V-------------------LT 107 (177)
Q Consensus 60 ~~dit----------~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~--v-------------------~~ 107 (177)
++|+| +..||..+. |++.+... ....++|++|||||+||..++. + +.
T Consensus 213 v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~-~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~ 291 (354)
T 2xtz_A 213 CAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEI 291 (354)
T ss_dssp EEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTC-GGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHH
T ss_pred EEECcccccccccccchhHHHHHHHHHHHHHhc-cccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCH
Confidence 48888 888998886 88766322 2235799999999999964332 2 25
Q ss_pred HHHHHHHHH----------------cCCcEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy1416 108 EDAQRFANQ----------------MGIQLFETSAKDNINVEEMFMAITNLVLRSK 147 (177)
Q Consensus 108 ~~~~~~a~~----------------~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~~ 147 (177)
+++..++.. ..+.|++|||+++.||+++|..+++.+++..
T Consensus 292 ~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~~~ 347 (354)
T 2xtz_A 292 EHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRN 347 (354)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHHHH
Confidence 778887553 1234689999999999999999999887653
No 111
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.12 E-value=6.9e-12 Score=93.31 Aligned_cols=83 Identities=13% Similarity=0.099 Sum_probs=50.5
Q ss_pred ccccchhh-hhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccC------------------------------
Q psy1416 60 VCTVLNEC-AWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVL------------------------------ 106 (177)
Q Consensus 60 ~~dit~~~-Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~------------------------------ 106 (177)
+.|+++.. ++..+. |...+........++|++|||||+||...+.+.
T Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~ 164 (214)
T 2fh5_B 85 VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTA 164 (214)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------
T ss_pred EEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccc
Confidence 46777743 465553 443332212223478999999999997654311
Q ss_pred ----HHHHHHHHHHc---CCcEEEecCCCC------CCHHHHHHHHHHH
Q psy1416 107 ----TEDAQRFANQM---GIQLFETSAKDN------INVEEMFMAITNL 142 (177)
Q Consensus 107 ----~~~~~~~a~~~---~~~~~e~Sak~~------~~v~~~f~~~~~~ 142 (177)
.+++..|+.+. ++.|+||||++| .||+++|..+++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 165 PAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11111111111 567999999999 9999999999875
No 112
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.11 E-value=4.8e-12 Score=91.55 Aligned_cols=76 Identities=13% Similarity=-0.018 Sum_probs=56.5
Q ss_pred ccccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q psy1416 60 VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139 (177)
Q Consensus 60 ~~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~ 139 (177)
+.|+++..||....|+..+... ...++|++|||||+||..... .++...+.+|+++||++|.||+++|..+
T Consensus 90 v~D~~~~~s~~~~~~~~~~~~~--~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~gv~~l~~~l 160 (172)
T 2gj8_A 90 MVDGTTTDAVDPAEIWPEFIAR--LPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEGVDVLRNHL 160 (172)
T ss_dssp EEETTTCCCCSHHHHCHHHHHH--SCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHh--cccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCCHHHHHHHH
Confidence 4888999998865587766322 224789999999999964321 1223356789999999999999999999
Q ss_pred HHHHH
Q psy1416 140 TNLVL 144 (177)
Q Consensus 140 ~~~~~ 144 (177)
++.+.
T Consensus 161 ~~~~~ 165 (172)
T 2gj8_A 161 KQSMG 165 (172)
T ss_dssp HHHC-
T ss_pred HHHhh
Confidence 87653
No 113
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.11 E-value=1.8e-11 Score=89.03 Aligned_cols=80 Identities=20% Similarity=0.163 Sum_probs=62.7
Q ss_pred ccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q psy1416 62 TVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140 (177)
Q Consensus 62 dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~ 140 (177)
.+.|..+|.... |+..+.. .++|++||+||+|+...+.+. .++..+++.++++|+++||++|.||+++|..++
T Consensus 91 ~v~d~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 164 (188)
T 2wjg_A 91 NIVDATALERNLYLTLQLME-----MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAIS 164 (188)
T ss_dssp EEEEGGGHHHHHHHHHHHHT-----TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHH
T ss_pred EEecchhHHHHHHHHHHHHh-----cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHH
Confidence 345556676665 8766532 368999999999997655555 467788999999999999999999999999999
Q ss_pred HHHHHHH
Q psy1416 141 NLVLRSK 147 (177)
Q Consensus 141 ~~~~~~~ 147 (177)
+.+.+..
T Consensus 165 ~~~~~~~ 171 (188)
T 2wjg_A 165 IAVKDKK 171 (188)
T ss_dssp HHHTTC-
T ss_pred HHHHhcc
Confidence 8876543
No 114
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.08 E-value=3e-11 Score=98.71 Aligned_cols=87 Identities=20% Similarity=0.087 Sum_probs=65.6
Q ss_pred ccccch----------hhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCc---c--------------------
Q psy1416 60 VCTVLN----------ECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKV---V-------------------- 105 (177)
Q Consensus 60 ~~dit~----------~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~---v-------------------- 105 (177)
+.|+|+ ..||..+. |+..+.. .....++|++|||||+||...+. +
T Consensus 247 V~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~-~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~ 325 (402)
T 1azs_C 247 VVASSSYNMVIREDNQTNRLQEALNLFKSIWN-NRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDAT 325 (402)
T ss_dssp EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHT-CTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCC
T ss_pred EEECcccccccccccccchHHHHHHHHHHHHh-cccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccc
Confidence 489999 89999987 9877632 22335799999999999965443 2
Q ss_pred -------CHHHHHHHHH-----H--------cCCcEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy1416 106 -------LTEDAQRFAN-----Q--------MGIQLFETSAKDNINVEEMFMAITNLVLRSK 147 (177)
Q Consensus 106 -------~~~~~~~~a~-----~--------~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~~ 147 (177)
+.+++..|+. . .++.|++|||+++.||+++|..+.+.+++..
T Consensus 326 ~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 326 PEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH 387 (402)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHHHH
Confidence 1466776642 2 2456789999999999999999998887654
No 115
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.07 E-value=2.5e-11 Score=98.12 Aligned_cols=86 Identities=16% Similarity=0.074 Sum_probs=66.6
Q ss_pred ccccch----------hhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCC----------------ccCHHHHHH
Q psy1416 60 VCTVLN----------ECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKK----------------VVLTEDAQR 112 (177)
Q Consensus 60 ~~dit~----------~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~----------------~v~~~~~~~ 112 (177)
+.|+++ ..+|.... |+..+.. .....++|+||||||+||..++ .++.+++..
T Consensus 231 v~dls~~dq~l~ed~~~n~~~es~~~~~~i~~-~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~ 309 (362)
T 1zcb_A 231 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVN-NRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQK 309 (362)
T ss_dssp EEETTCTTCEETTEEEEEHHHHHHHHHHHHHT-CGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHH
T ss_pred EEECccccccccccccccHHHHHHHHHHHHhc-chhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHH
Confidence 478888 77898886 8776632 2223579999999999996432 377889988
Q ss_pred HHH-----------HcCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416 113 FAN-----------QMGIQLFETSAKDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 113 ~a~-----------~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~ 146 (177)
|+. ..++.|++|||+++.||+++|..+++.+++.
T Consensus 310 ~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~ 354 (362)
T 1zcb_A 310 FLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD 354 (362)
T ss_dssp HHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHH
Confidence 872 3457799999999999999999999988765
No 116
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.06 E-value=1.9e-11 Score=97.39 Aligned_cols=84 Identities=24% Similarity=0.187 Sum_probs=64.4
Q ss_pred ccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCC----------------ccCHHHHHHHHH---------
Q psy1416 62 TVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKK----------------VVLTEDAQRFAN--------- 115 (177)
Q Consensus 62 dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~----------------~v~~~~~~~~a~--------- 115 (177)
|.++..+|.... |+..+.. .....++|++|||||+||..++ .++.+++..|+.
T Consensus 209 d~~~~nr~~es~~~~~~i~~-~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~ 287 (327)
T 3ohm_A 209 ESDNENRMEESKALFRTIIT-YPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPD 287 (327)
T ss_dssp SCTTSBHHHHHHHHHHHHHT-SGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTT
T ss_pred ccccHhHHHHHHHHHHHHhh-hhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhccc
Confidence 344667776665 7766532 2233579999999999996544 578899998843
Q ss_pred -HcCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416 116 -QMGIQLFETSAKDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 116 -~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~ 146 (177)
..++.+++|||+++.||+++|..+++.|++.
T Consensus 288 ~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 288 SDKIIYSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp TTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999864
No 117
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.04 E-value=9e-11 Score=92.62 Aligned_cols=77 Identities=17% Similarity=0.068 Sum_probs=61.8
Q ss_pred ccccchhh-hhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccC-HHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q psy1416 60 VCTVLNEC-AWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVL-TEDAQRFANQMGIQLFETSAKDNINVEEMF 136 (177)
Q Consensus 60 ~~dit~~~-Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~-~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f 136 (177)
..|++++. ||..+. |+..+.. .++|++||+||+||.+++.+. .++...+++.++++++++||++|.||+++|
T Consensus 86 V~d~~~p~~s~~~l~~~l~~~~~-----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~ 160 (302)
T 2yv5_A 86 VETLKMPEFNNYLLDNMLVVYEY-----FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELV 160 (302)
T ss_dssp EECSTTTTCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHHHh-----CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence 48999886 898887 9876532 378999999999997654333 456677777889999999999999999999
Q ss_pred HHHHH
Q psy1416 137 MAITN 141 (177)
Q Consensus 137 ~~~~~ 141 (177)
..+..
T Consensus 161 ~~l~G 165 (302)
T 2yv5_A 161 DYLEG 165 (302)
T ss_dssp HHTTT
T ss_pred hhccC
Confidence 87653
No 118
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.04 E-value=2.3e-11 Score=101.86 Aligned_cols=85 Identities=11% Similarity=-0.084 Sum_probs=59.9
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHH-----HHcCCcEEEecCCCCCCHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFA-----NQMGIQLFETSAKDNINVE 133 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a-----~~~~~~~~e~Sak~~~~v~ 133 (177)
+.|++++.||..+. |+..+... ....++|+||||||+||.... ..++..... ...+++|+++||++|.||+
T Consensus 396 V~D~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 396 VVDCADRDRIDEARQELHRIIND-REMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTS-GGGTTCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEECcchhHHHHHHHHHHHHhhh-hhcCCCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 48999999999997 87766322 222579999999999997542 333222211 1123469999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1416 134 EMFMAITNLVLRSK 147 (177)
Q Consensus 134 ~~f~~~~~~~~~~~ 147 (177)
++|..|++.+.+..
T Consensus 473 ~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 473 EGLTWLTSNYKSKL 486 (497)
T ss_dssp HHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhcC
Confidence 99999998775543
No 119
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.01 E-value=1.6e-10 Score=84.30 Aligned_cols=78 Identities=10% Similarity=0.039 Sum_probs=54.0
Q ss_pred cccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCH--HHHHH-HHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416 61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLT--EDAQR-FANQMGIQLFETSAKDNINVEEMFM 137 (177)
Q Consensus 61 ~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~--~~~~~-~a~~~~~~~~e~Sak~~~~v~~~f~ 137 (177)
.|+++..++....++..+.. .++|++||+||+|+...+.+.. +++.+ ++...+.+|+++||++|.||+++|.
T Consensus 113 ~d~~~~~~~~~~~~~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 187 (195)
T 1svi_A 113 VDLRHAPSNDDVQMYEFLKY-----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWG 187 (195)
T ss_dssp EETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHH
Confidence 56777777665532222211 3689999999999987654432 23332 3333467899999999999999999
Q ss_pred HHHHHH
Q psy1416 138 AITNLV 143 (177)
Q Consensus 138 ~~~~~~ 143 (177)
.+++.+
T Consensus 188 ~l~~~l 193 (195)
T 1svi_A 188 AIKKMI 193 (195)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998765
No 120
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.01 E-value=1.8e-10 Score=83.78 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=47.6
Q ss_pred CCcEEEEeeCCCCcCC--CccCHHHHHHHHHHcC-CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQK--KVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~--~~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
++|++|||||+|+... +.+..+++..++...+ ++|+++||++|.||+++|..+++.+.
T Consensus 133 ~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 133 NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 6899999999999643 3445567777777744 78999999999999999999998774
No 121
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.94 E-value=1.4e-10 Score=81.80 Aligned_cols=52 Identities=25% Similarity=0.296 Sum_probs=42.9
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~f~~~~~~~ 143 (177)
++|++|||||+|+...+ +++..++ .+++ +|+++||++|.||+++|..+++.+
T Consensus 108 ~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 108 GKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp TCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred CCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 68999999999997542 3445566 6777 899999999999999999998754
No 122
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.92 E-value=1.3e-09 Score=87.77 Aligned_cols=82 Identities=12% Similarity=0.093 Sum_probs=63.8
Q ss_pred ccccchhh--hhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHH
Q psy1416 60 VCTVLNEC--AWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMF 136 (177)
Q Consensus 60 ~~dit~~~--Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f 136 (177)
+.|+++.. ++.... |+..+.... .+.|+++|+||+|+...+.+ +++..++...+.+++++||++|.||+++|
T Consensus 253 V~D~s~~~~~~~~~~~~~~~~i~~~~---~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~g~gi~~l~ 327 (357)
T 2e87_A 253 IFDPSEHCGFPLEEQIHLFEEVHGEF---KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALKGTGIDLVK 327 (357)
T ss_dssp EECTTCTTSSCHHHHHHHHHHHHHHT---TTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTTTBTHHHHH
T ss_pred EEeCCccccCCHHHHHHHHHHHHHhc---CCCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCCCcCHHHHH
Confidence 47777776 566665 877663221 26899999999999765433 56677788889999999999999999999
Q ss_pred HHHHHHHHHH
Q psy1416 137 MAITNLVLRS 146 (177)
Q Consensus 137 ~~~~~~~~~~ 146 (177)
..+.+.+...
T Consensus 328 ~~i~~~l~~~ 337 (357)
T 2e87_A 328 EEIIKTLRPL 337 (357)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 123
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.92 E-value=8.1e-10 Score=93.40 Aligned_cols=80 Identities=15% Similarity=0.060 Sum_probs=61.1
Q ss_pred cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q psy1416 61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139 (177)
Q Consensus 61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~ 139 (177)
.|++ +++.+. |+..+... .++.|++|||||+|+...+.+..+++..++...+++|+++||++|.||+++|..+
T Consensus 129 ~D~s---~~~~~~~~~~~l~~~---~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l 202 (535)
T 3dpu_A 129 LDSR---TDSNKHYWLRHIEKY---GGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSL 202 (535)
T ss_dssp ECGG---GGGGHHHHHHHHHHH---SSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHH
T ss_pred EeCC---CchhHHHHHHHHHHh---CCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHH
Confidence 5444 455665 98877422 1368999999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy1416 140 TNLVLRS 146 (177)
Q Consensus 140 ~~~~~~~ 146 (177)
++.+.+.
T Consensus 203 ~~~~~~~ 209 (535)
T 3dpu_A 203 KSAVLHP 209 (535)
T ss_dssp HHHHTCT
T ss_pred HHHHhcc
Confidence 9887543
No 124
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.91 E-value=3.8e-10 Score=87.77 Aligned_cols=76 Identities=14% Similarity=0.039 Sum_probs=58.1
Q ss_pred ccccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q psy1416 60 VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139 (177)
Q Consensus 60 ~~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~ 139 (177)
+.|.++.+++. .|...+.. .++|++||+||+|+...+.+. .++..+++.++++++++||++|.||+++|..+
T Consensus 87 V~D~t~~e~~~--~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i 158 (272)
T 3b1v_A 87 VVDATNLERNL--YLTTQLIE-----TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKA 158 (272)
T ss_dssp EEEGGGHHHHH--HHHHHHHH-----TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHH
T ss_pred EecCCchHhHH--HHHHHHHh-----cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHH
Confidence 35666655442 26544421 378999999999997655555 46678899999999999999999999999999
Q ss_pred HHHH
Q psy1416 140 TNLV 143 (177)
Q Consensus 140 ~~~~ 143 (177)
++.+
T Consensus 159 ~~~~ 162 (272)
T 3b1v_A 159 AHTT 162 (272)
T ss_dssp HHSC
T ss_pred HHHH
Confidence 8754
No 125
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.90 E-value=1.9e-09 Score=77.34 Aligned_cols=58 Identities=16% Similarity=0.117 Sum_probs=43.4
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHc-------C--CcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQM-------G--IQLFETSAKDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~-------~--~~~~e~Sak~~~~v~~~f~~~~~~~~~~ 146 (177)
.++|++|||||+||... ..++........ + ++|+++||++|.||+++|..+++.+...
T Consensus 106 ~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 106 ANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp GSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence 36899999999999753 223333333322 2 4799999999999999999999887654
No 126
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.88 E-value=5.9e-10 Score=86.01 Aligned_cols=76 Identities=17% Similarity=0.112 Sum_probs=57.8
Q ss_pred cccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q psy1416 61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140 (177)
Q Consensus 61 ~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~ 140 (177)
.|.++.+++. .|+..+.. .++|++||+||+|+...+.+.. ++..+++.++++++++||++|.||+++|..++
T Consensus 91 ~D~t~~~~~~--~~~~~l~~-----~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~ 162 (258)
T 3a1s_A 91 ADSVNPEQSL--YLLLEILE-----MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEGLEELKEKIV 162 (258)
T ss_dssp EETTSCHHHH--HHHHHHHT-----TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTTHHHHHHHHH
T ss_pred eCCCchhhHH--HHHHHHHh-----cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHH
Confidence 5555544432 25544421 2689999999999976555553 47789999999999999999999999999998
Q ss_pred HHHH
Q psy1416 141 NLVL 144 (177)
Q Consensus 141 ~~~~ 144 (177)
+.+.
T Consensus 163 ~~~~ 166 (258)
T 3a1s_A 163 EYAQ 166 (258)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8654
No 127
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.87 E-value=2.7e-09 Score=84.28 Aligned_cols=80 Identities=11% Similarity=0.029 Sum_probs=64.2
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC--CcEEEecCCCCCCHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG--IQLFETSAKDNINVEEMF 136 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~--~~~~e~Sak~~~~v~~~f 136 (177)
+.|.++..++.... |+..+.. .++|++||+||+|+...+....+....+++.++ .+++++||++|.||+++|
T Consensus 99 VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~ 173 (308)
T 3iev_A 99 MIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELV 173 (308)
T ss_dssp EEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHH
T ss_pred EEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHH
Confidence 36677777777776 7776642 368999999999997445566777888888876 789999999999999999
Q ss_pred HHHHHHHH
Q psy1416 137 MAITNLVL 144 (177)
Q Consensus 137 ~~~~~~~~ 144 (177)
..+++.+.
T Consensus 174 ~~l~~~l~ 181 (308)
T 3iev_A 174 KTILKYLP 181 (308)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhCc
Confidence 99988764
No 128
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.85 E-value=1.1e-09 Score=87.88 Aligned_cols=82 Identities=17% Similarity=0.156 Sum_probs=63.7
Q ss_pred ccccch---hhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcC--CcEEEecCCCCCCHH
Q psy1416 60 VCTVLN---ECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG--IQLFETSAKDNINVE 133 (177)
Q Consensus 60 ~~dit~---~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~--~~~~e~Sak~~~~v~ 133 (177)
+.|+++ +.+|..+. |+.++........+.|++||+||+|+...+ +....+++.+. .+++++||+++.||+
T Consensus 243 VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg~gi~ 318 (342)
T 1lnz_A 243 VIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTREGLR 318 (342)
T ss_dssp EEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCSSTTH
T ss_pred EEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCCcCHH
Confidence 478888 78898887 887774322212478999999999997432 45667777776 689999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1416 134 EMFMAITNLVLR 145 (177)
Q Consensus 134 ~~f~~~~~~~~~ 145 (177)
++|..+++.+.+
T Consensus 319 eL~~~l~~~l~~ 330 (342)
T 1lnz_A 319 ELLFEVANQLEN 330 (342)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHhh
Confidence 999999987743
No 129
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.84 E-value=5.7e-10 Score=89.29 Aligned_cols=85 Identities=16% Similarity=0.123 Sum_probs=63.7
Q ss_pred ccccc----------hhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCc---------------cCHHHHHHH
Q psy1416 60 VCTVL----------NECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKV---------------VLTEDAQRF 113 (177)
Q Consensus 60 ~~dit----------~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~---------------v~~~~~~~~ 113 (177)
+.|++ +..+|.... |+..+. ......++|++|||||+||..++. ...+++..|
T Consensus 191 V~diS~ydq~l~e~~~~nr~~es~~~~~~i~-~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~ 269 (340)
T 4fid_A 191 VTSLAEYDMKLYEDGNTSRLTESIAVFKDIM-TNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQY 269 (340)
T ss_dssp EEEGGGTTCBCC--CCSBHHHHHHHHHHHHH-HCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHH
T ss_pred EEECCccccccccccccchHHHHHHHHHHHh-hhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHH
Confidence 47888 678887775 776653 222335899999999999954221 356777766
Q ss_pred HHHc---------------------------CCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416 114 ANQM---------------------------GIQLFETSAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 114 a~~~---------------------------~~~~~e~Sak~~~~v~~~f~~~~~~~~~ 145 (177)
+... .+.+++|||+++.||+.+|..+.+.|++
T Consensus 270 i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 270 IQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 5442 2668899999999999999999999987
No 130
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.83 E-value=3.6e-09 Score=79.17 Aligned_cols=81 Identities=11% Similarity=-0.111 Sum_probs=59.1
Q ss_pred chhhhhcccc-hhhhhhhhhccCCCCcE----------EEEeeCCCCcCCCccCHHHHHHHHHHc--CCcEEEecCCCCC
Q psy1416 64 LNECAWLGCG-WMTICPIIYCWLFPSGL----------RLVGNKNDDPQKKVVLTEDAQRFANQM--GIQLFETSAKDNI 130 (177)
Q Consensus 64 t~~~Sf~~~~-w~~~~~~~~~~~~~~~~----------ilvgnK~Dl~~~~~v~~~~~~~~a~~~--~~~~~e~Sak~~~ 130 (177)
..+.||.... |...+..... ....|+ +||+||+|+...+.+..+++..++..+ +++++++||++|.
T Consensus 131 ~~~~s~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 209 (226)
T 2hf9_A 131 ICPADFDLGTHKRIVVISTTE-GDDTIEKHPGIMKTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTME 209 (226)
T ss_dssp SGGGGCCCSCSEEEEEEEGGG-CTTTTTTCHHHHTTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCT
T ss_pred cCcchhhhccCcEEEEEecCc-chhhHhhhhhHhhcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCC
Confidence 3456777665 7654422111 123444 999999999765556778888888765 5789999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy1416 131 NVEEMFMAITNLVLR 145 (177)
Q Consensus 131 ~v~~~f~~~~~~~~~ 145 (177)
||+++|..+.+.+..
T Consensus 210 gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 210 GFDKVLEFIEKSVKE 224 (226)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999887653
No 131
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.82 E-value=3.6e-09 Score=87.80 Aligned_cols=61 Identities=15% Similarity=0.050 Sum_probs=53.4
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHc-----CCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQM-----GIQLFETSAKDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~-----~~~~~e~Sak~~~~v~~~f~~~~~~~~~~ 146 (177)
.+.|++||+||+||...+.++.+++.+++++. +++|+++||++|.||+++|..+++.+.+.
T Consensus 305 ~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 305 AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence 36899999999999887888888888888776 57999999999999999999999887654
No 132
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.78 E-value=6.1e-09 Score=85.95 Aligned_cols=81 Identities=11% Similarity=-0.068 Sum_probs=60.2
Q ss_pred cccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHH-HHH----cCCcEEEecCCCCCCHHHH
Q psy1416 61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRF-ANQ----MGIQLFETSAKDNINVEEM 135 (177)
Q Consensus 61 ~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~-a~~----~~~~~~e~Sak~~~~v~~~ 135 (177)
.|+++..++....|+..+.. .+.|++||+||+||...+.++.++.... .+. .+++|+++||++|.||+++
T Consensus 265 ~D~~~~~s~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l 339 (436)
T 2hjg_A 265 LDGEEGIIEQDKRIAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTL 339 (436)
T ss_dssp EETTTCCCHHHHHHHHHHHH-----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGH
T ss_pred EcCCcCCcHHHHHHHHHHHH-----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHH
Confidence 56677777777667655521 3689999999999987666554444332 232 3679999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1416 136 FMAITNLVLRS 146 (177)
Q Consensus 136 f~~~~~~~~~~ 146 (177)
|..+.+.+.+.
T Consensus 340 ~~~i~~~~~~~ 350 (436)
T 2hjg_A 340 MPAIIKASENH 350 (436)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999877653
No 133
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.74 E-value=1.4e-09 Score=83.74 Aligned_cols=74 Identities=12% Similarity=0.096 Sum_probs=56.5
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|.++.+++..+. |+.+. ++|++||+||+|+...+.+.. ....+++.++++++++||++|.||+++|..
T Consensus 90 VvDas~~~~~~~l~~~l~~~--------~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~ 160 (256)
T 3iby_A 90 VIDACHLERHLYLTSQLFEL--------GKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNIGIPALQQS 160 (256)
T ss_dssp EEEGGGHHHHHHHHHHHTTS--------CSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTBSHHHHHHH
T ss_pred EeeCCCchhHHHHHHHHHHc--------CCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCCCHHHHHHH
Confidence 46777777766554 54332 689999999999975443322 245588889999999999999999999999
Q ss_pred HHHH
Q psy1416 139 ITNL 142 (177)
Q Consensus 139 ~~~~ 142 (177)
+.+.
T Consensus 161 i~~~ 164 (256)
T 3iby_A 161 LLHC 164 (256)
T ss_dssp HHTC
T ss_pred HHhh
Confidence 8764
No 134
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.69 E-value=2.2e-09 Score=79.80 Aligned_cols=73 Identities=11% Similarity=-0.048 Sum_probs=49.2
Q ss_pred ccccc-hhhhhcccc-hhhhhhhhhc--cCCCCcEEEEeeCCCCcCCCccC------HHHHHHHHHHcCCcEEEecCCCC
Q psy1416 60 VCTVL-NECAWLGCG-WMTICPIIYC--WLFPSGLRLVGNKNDDPQKKVVL------TEDAQRFANQMGIQLFETSAKDN 129 (177)
Q Consensus 60 ~~dit-~~~Sf~~~~-w~~~~~~~~~--~~~~~~~ilvgnK~Dl~~~~~v~------~~~~~~~a~~~~~~~~e~Sak~~ 129 (177)
+.|++ ++.+|..+. |+..+..... ...++|++||+||+||...+.+. .+++..++...++.|+++||++|
T Consensus 89 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~ 168 (218)
T 1nrj_B 89 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKIN 168 (218)
T ss_dssp EEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred EEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 47788 889999887 8876632221 23579999999999998776655 56678888888889999999998
Q ss_pred CCH
Q psy1416 130 INV 132 (177)
Q Consensus 130 ~~v 132 (177)
.+.
T Consensus 169 ~~~ 171 (218)
T 1nrj_B 169 EED 171 (218)
T ss_dssp ---
T ss_pred ccc
Confidence 763
No 135
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.67 E-value=6.5e-09 Score=78.14 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=25.5
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSK 31 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~ 31 (177)
+|+.|+|||||+|.||+++|..|++.|+...
T Consensus 148 ~~~~~~e~SAktg~nV~e~F~~i~~~i~~~~ 178 (216)
T 4dkx_A 148 LNVMFIETSAKAGYNVKQLFRRVAAALPGME 178 (216)
T ss_dssp HTCEEEEEBTTTTBSHHHHHHHHHHHC----
T ss_pred hCCeeEEEeCCCCcCHHHHHHHHHHHHHhhh
Confidence 3789999999999999999999999987643
No 136
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.67 E-value=1.5e-08 Score=75.40 Aligned_cols=60 Identities=10% Similarity=0.065 Sum_probs=43.2
Q ss_pred CCcEEEEeeCCCCcCCCccC--HHHHHHHHHH-------cCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVL--TEDAQRFANQ-------MGIQLFETSAKDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~--~~~~~~~a~~-------~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~ 146 (177)
+.|++||+||+|+...+.+. .++....... .+.+++++||++|.||+++|..+.+.+...
T Consensus 144 ~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 144 GKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp CCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred CCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 68999999999997543321 1222222222 457899999999999999999999887654
No 137
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.64 E-value=2.3e-09 Score=83.31 Aligned_cols=76 Identities=13% Similarity=0.036 Sum_probs=55.8
Q ss_pred ccccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 60 VCTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 60 ~~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|.++.+++..+. |+.+. ++|+++|+||+|+...+.+.. +...+++.++++++++||++|.||+++|..
T Consensus 92 VvD~~~~~~~~~~~~~l~~~--------~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~~g~gi~el~~~ 162 (274)
T 3i8s_A 92 VVDASNLERNLYLTLQLLEL--------GIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVSTRGRGIEALKLA 162 (274)
T ss_dssp EEEGGGHHHHHHHHHHHHHH--------TCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCGGGHHHHHHHHH
T ss_pred EecCCChHHHHHHHHHHHhc--------CCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 36666665554433 43222 689999999999975443322 346788889999999999999999999999
Q ss_pred HHHHHH
Q psy1416 139 ITNLVL 144 (177)
Q Consensus 139 ~~~~~~ 144 (177)
+.+.+.
T Consensus 163 i~~~~~ 168 (274)
T 3i8s_A 163 IDRYKA 168 (274)
T ss_dssp HHTCCC
T ss_pred HHHHHh
Confidence 887553
No 138
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.60 E-value=4.8e-08 Score=81.52 Aligned_cols=75 Identities=15% Similarity=0.049 Sum_probs=56.3
Q ss_pred ccccchhhhhcccc----hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHH
Q psy1416 60 VCTVLNECAWLGCG----WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEM 135 (177)
Q Consensus 60 ~~dit~~~Sf~~~~----w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~ 135 (177)
+.|+++..++..+. |+..+ .+.|+++|+||+||...+.+ +...+++....+++++||++|.||+++
T Consensus 319 VvD~s~~~s~~~~~~~~~~l~~l-------~~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI~eL 388 (476)
T 3gee_A 319 LLDLGTERLDDELTEIRELKAAH-------PAAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDGIDTL 388 (476)
T ss_dssp EEETTTCSSGGGHHHHHHHHHHC-------TTSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred EEECCCCcchhhhHHHHHHHHhc-------CCCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCCHHHH
Confidence 47888888886443 44333 26899999999999876543 223455543478999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 136 FMAITNLVL 144 (177)
Q Consensus 136 f~~~~~~~~ 144 (177)
|..+.+.+.
T Consensus 389 ~~~i~~~~~ 397 (476)
T 3gee_A 389 KQHMGDLVK 397 (476)
T ss_dssp HHHHTHHHH
T ss_pred HHHHHHHHh
Confidence 999998775
No 139
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.58 E-value=6.2e-09 Score=84.02 Aligned_cols=82 Identities=13% Similarity=0.022 Sum_probs=54.4
Q ss_pred cccccch-hhhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCH--HHHHHHHHHcCCcEEEecCCCCCCHH
Q psy1416 59 KVCTVLN-ECAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLT--EDAQRFANQMGIQLFETSAKDNINVE 133 (177)
Q Consensus 59 ~~~dit~-~~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~--~~~~~~a~~~~~~~~e~Sak~~~~v~ 133 (177)
+.++|++ ..+|..+. |+..+ ...+|+|+|+||+|+...+.+.. +++..++..++++||++||++|.+ +
T Consensus 149 ~vy~I~~~~~~l~~~d~~~~~~l------~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~ 221 (361)
T 2qag_A 149 CFYFISPFGHGLKPLDVAFMKAI------HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-D 221 (361)
T ss_dssp EEEEECSSSSSCCHHHHHHHHHT------CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC--------
T ss_pred EEEEEecCCCCcchhHHHHHHHh------ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-c
Confidence 5677776 66777664 65444 14789999999999987666554 577788888899999999999999 9
Q ss_pred HHHHHHHHHHHHHH
Q psy1416 134 EMFMAITNLVLRSK 147 (177)
Q Consensus 134 ~~f~~~~~~~~~~~ 147 (177)
+.|..+++.+.+..
T Consensus 222 e~~~~l~~~i~~~i 235 (361)
T 2qag_A 222 EDFKEQTRLLKASI 235 (361)
T ss_dssp --CHHHHHHHHHTC
T ss_pred hhHHHHHHHHHhcC
Confidence 99999998887643
No 140
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.58 E-value=9.6e-09 Score=84.53 Aligned_cols=65 Identities=14% Similarity=0.107 Sum_probs=53.4
Q ss_pred hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416 74 WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 74 w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~ 145 (177)
|+..+... ++|+++|+||+|+...+.. +.+..+++.++++|+++||++|.||+++|..+++.+.+
T Consensus 132 ~l~~l~~~-----~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 132 VVNLFKEM-----EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp HHHHHHHT-----TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred HHHHHHhc-----CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 66555321 6899999999999876654 66777788889999999999999999999999988743
No 141
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.57 E-value=7.2e-08 Score=80.57 Aligned_cols=75 Identities=13% Similarity=-0.022 Sum_probs=53.6
Q ss_pred cccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q psy1416 61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140 (177)
Q Consensus 61 ~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~ 140 (177)
.|+++..++....+++.+ .+.|+++|+||+||... +..++...++. ++.+++++||++|.||+++|..+.
T Consensus 331 vD~s~~~s~~~~~il~~l-------~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~ 400 (482)
T 1xzp_A 331 LDASSPLDEEDRKILERI-------KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEGLEKLEESIY 400 (482)
T ss_dssp EETTSCCCHHHHHHHHHH-------TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHh-------cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHHH
Confidence 555666555544322221 36799999999999753 45555555543 447899999999999999999999
Q ss_pred HHHHH
Q psy1416 141 NLVLR 145 (177)
Q Consensus 141 ~~~~~ 145 (177)
+.+..
T Consensus 401 ~~~~~ 405 (482)
T 1xzp_A 401 RETQE 405 (482)
T ss_dssp HHTHH
T ss_pred HHHhh
Confidence 87664
No 142
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.51 E-value=2.3e-08 Score=77.31 Aligned_cols=57 Identities=26% Similarity=0.285 Sum_probs=48.2
Q ss_pred CcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416 88 SGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 88 ~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~ 145 (177)
.|+++|+||+|+...+.+... ...+++.++++++++||++|.||+++|..+.+.+..
T Consensus 110 ~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 110 KNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp CSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred CCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 899999999998754444432 677889999999999999999999999999887643
No 143
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.40 E-value=1.6e-07 Score=69.80 Aligned_cols=60 Identities=15% Similarity=0.021 Sum_probs=47.6
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHc--CCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQM--GIQLFETSAKDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~--~~~~~e~Sak~~~~v~~~f~~~~~~~~~~ 146 (177)
..|+++|+||+|+...+.+..++...++... +.+++++||++|.|++++|..+.+.+...
T Consensus 154 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 154 RVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred hcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 4688999999999754445677777777765 46899999999999999999999877543
No 144
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.40 E-value=3e-07 Score=75.81 Aligned_cols=61 Identities=20% Similarity=0.059 Sum_probs=46.7
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHH-HHHH----cCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQR-FANQ----MGIQLFETSAKDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~-~a~~----~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~ 146 (177)
.+.|++||+||+||...+.++.++... +++. .+++++++||++|.||+++|..+.+.+...
T Consensus 291 ~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 291 RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 368999999999998766555554432 2233 357899999999999999999999876543
No 145
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.37 E-value=8.7e-07 Score=71.61 Aligned_cols=75 Identities=24% Similarity=0.333 Sum_probs=52.6
Q ss_pred ccccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHH----HHHcCC---cEEEecCCCCCCH
Q psy1416 60 VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRF----ANQMGI---QLFETSAKDNINV 132 (177)
Q Consensus 60 ~~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~----a~~~~~---~~~e~Sak~~~~v 132 (177)
..|+++.. ..|...+... ..+.|++||+||+||... .+..++..+| ++..|. .++++||++|.||
T Consensus 76 VvD~~d~~----~~~~~~l~~~---~~~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi 147 (368)
T 3h2y_A 76 IVDIFDFN----GSWLPGLHRF---VGNNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGI 147 (368)
T ss_dssp EEETTSHH----HHCCTTHHHH---SSSSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTH
T ss_pred EEECCCCc----ccHHHHHHHH---hCCCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCH
Confidence 36666543 1276665322 236899999999999753 3444444444 566777 7999999999999
Q ss_pred HHHHHHHHHH
Q psy1416 133 EEMFMAITNL 142 (177)
Q Consensus 133 ~~~f~~~~~~ 142 (177)
++++..+.+.
T Consensus 148 ~~L~~~l~~~ 157 (368)
T 3h2y_A 148 AELADAIEYY 157 (368)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhhhhhh
Confidence 9999888654
No 146
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.36 E-value=1.5e-07 Score=78.24 Aligned_cols=74 Identities=18% Similarity=0.056 Sum_probs=51.2
Q ss_pred cccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHH
Q psy1416 61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140 (177)
Q Consensus 61 ~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~ 140 (177)
.|.++..++....|+..+. ..|+++|+||+||...+.+. ....++ .+.+++++||++|.||+++|..+.
T Consensus 311 vD~s~~~~~~~~~i~~~l~-------~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~ 379 (462)
T 3geh_A 311 IDAATGWTTGDQEIYEQVK-------HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAIL 379 (462)
T ss_dssp EETTTCSCHHHHHHHHHHT-------TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHH
T ss_pred eccCCCCCHHHHHHHHhcc-------CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHH
Confidence 5556655554433554442 36999999999997655443 111111 356899999999999999999999
Q ss_pred HHHHH
Q psy1416 141 NLVLR 145 (177)
Q Consensus 141 ~~~~~ 145 (177)
+.+..
T Consensus 380 ~~~~~ 384 (462)
T 3geh_A 380 EIVQT 384 (462)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 87653
No 147
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.34 E-value=1e-07 Score=75.05 Aligned_cols=60 Identities=18% Similarity=0.145 Sum_probs=42.2
Q ss_pred CCCcEEEEeeCCCCcCCCcc--CHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVV--LTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v--~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~ 146 (177)
..+|+++|+||.|+...+.+ ..+++.++++.+++.||++||++| +|+++|..+++.+.+.
T Consensus 154 ~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 154 NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 36789999999999765433 356888999999999999999999 9999999999888643
No 148
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.24 E-value=8.2e-07 Score=74.18 Aligned_cols=58 Identities=16% Similarity=0.100 Sum_probs=44.8
Q ss_pred CCcEEEEeeCCCCcCCC--ccCHHHHHHHHHHc----CCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKK--VVLTEDAQRFANQM----GIQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~--~v~~~~~~~~a~~~----~~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
++|+++|+||+|+.+.. ....++...++... +.+++++||++|.||+++|..|.+.+.
T Consensus 125 ~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 125 NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 57889999999997532 11234555666655 578999999999999999999988764
No 149
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.23 E-value=1.2e-06 Score=71.61 Aligned_cols=57 Identities=21% Similarity=0.270 Sum_probs=38.8
Q ss_pred CcEEEEeeCCCCcCCCc--cCHHHHHHHHHH---cCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 88 SGLRLVGNKNDDPQKKV--VLTEDAQRFANQ---MGIQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 88 ~~~ilvgnK~Dl~~~~~--v~~~~~~~~a~~---~~~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
.|+++|+||+||.+... ...++...++.. .+++++++||++|.||+++|..+.+.+.
T Consensus 136 ~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 136 DKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp CCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred CeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 47999999999976432 235666777765 3578999999999999999999887553
No 150
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.20 E-value=2e-06 Score=73.58 Aligned_cols=76 Identities=17% Similarity=0.123 Sum_probs=55.6
Q ss_pred cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC---cEEEecCCCCCCHHHHH
Q psy1416 61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI---QLFETSAKDNINVEEMF 136 (177)
Q Consensus 61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~---~~~e~Sak~~~~v~~~f 136 (177)
.|.++..++.... |..... .++|+++|+||+|+...+ ..+...+++..++. .++++||++|.||+++|
T Consensus 102 VDa~~gv~~qt~~~~~~~~~------~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll 173 (599)
T 3cb4_D 102 VDAGQGVEAQTLANCYTAME------MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVL 173 (599)
T ss_dssp EETTTCCCTHHHHHHHHHHH------TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH------CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcceEEEeecccCCCchhHH
Confidence 5666666666655 643331 368999999999997643 23345567777776 49999999999999999
Q ss_pred HHHHHHHH
Q psy1416 137 MAITNLVL 144 (177)
Q Consensus 137 ~~~~~~~~ 144 (177)
..+++.+.
T Consensus 174 ~~I~~~lp 181 (599)
T 3cb4_D 174 ERLVRDIP 181 (599)
T ss_dssp HHHHHHSC
T ss_pred HHHhhcCC
Confidence 99887664
No 151
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.19 E-value=8.8e-07 Score=72.70 Aligned_cols=83 Identities=12% Similarity=-0.026 Sum_probs=58.8
Q ss_pred cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHH
Q psy1416 61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI 139 (177)
Q Consensus 61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~ 139 (177)
.|++ ..++..+. |..++..........|.+||+||+|+... ...++...++...+..++.+||+++.+|+++|..+
T Consensus 243 vDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 243 LDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp EETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred eCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 5565 56777776 76554322111124688999999999753 23344555566668899999999999999999999
Q ss_pred HHHHHHH
Q psy1416 140 TNLVLRS 146 (177)
Q Consensus 140 ~~~~~~~ 146 (177)
++.+.+.
T Consensus 320 ~~~l~~~ 326 (416)
T 1udx_A 320 HALVRST 326 (416)
T ss_dssp HHHHHTS
T ss_pred HHHHHhc
Confidence 9988654
No 152
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.19 E-value=3.3e-07 Score=72.08 Aligned_cols=75 Identities=17% Similarity=0.074 Sum_probs=48.9
Q ss_pred cccchhhhhcccchh-hhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHc--CCcEEEecCCCCCCHHHHHH
Q psy1416 61 CTVLNECAWLGCGWM-TICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQM--GIQLFETSAKDNINVEEMFM 137 (177)
Q Consensus 61 ~dit~~~Sf~~~~w~-~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~--~~~~~e~Sak~~~~v~~~f~ 137 (177)
.|.++..+... .|+ ..+.. . .++.|++||+||+|+...+. +....++.+ ...++++||++|.||+++|.
T Consensus 94 vD~~~~~~~~~-~~i~~~l~~-~--~~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~ 165 (301)
T 1wf3_A 94 VDLRHPPTPED-ELVARALKP-L--VGKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALDERQVAELKA 165 (301)
T ss_dssp EETTSCCCHHH-HHHHHHHGG-G--TTTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTCHHHHHHHHH
T ss_pred EECCCCCChHH-HHHHHHHHh-h--cCCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCCCCCHHHHHH
Confidence 56665533332 254 33321 1 24689999999999975432 022333333 24689999999999999999
Q ss_pred HHHHHH
Q psy1416 138 AITNLV 143 (177)
Q Consensus 138 ~~~~~~ 143 (177)
.+.+.+
T Consensus 166 ~l~~~l 171 (301)
T 1wf3_A 166 DLLALM 171 (301)
T ss_dssp HHHTTC
T ss_pred HHHHhc
Confidence 998755
No 153
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.15 E-value=1.2e-06 Score=72.16 Aligned_cols=55 Identities=22% Similarity=0.351 Sum_probs=42.5
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHH-HHHHHHcCC-cEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDA-QRFANQMGI-QLFETSAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~-~~~a~~~~~-~~~e~Sak~~~~v~~~f~~~~~~~~~ 145 (177)
+.|++||+||+|+... + ..++ .++. .+++ .++++||++|.||+++|..+++.+.+
T Consensus 110 ~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 110 TVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp TCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence 6799999999998632 1 1233 4444 4566 79999999999999999999988764
No 154
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.15 E-value=4.7e-06 Score=67.29 Aligned_cols=74 Identities=22% Similarity=0.304 Sum_probs=50.6
Q ss_pred cccchhhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHH----HHHcCC---cEEEecCCCCCCHH
Q psy1416 61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRF----ANQMGI---QLFETSAKDNINVE 133 (177)
Q Consensus 61 ~dit~~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~----a~~~~~---~~~e~Sak~~~~v~ 133 (177)
.|+++..+ .|+.++... ..+.|++||+||+||... .+..+...+| ++..|. .++.+||++|.|++
T Consensus 79 vD~~d~~~----s~~~~l~~~---l~~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~ 150 (369)
T 3ec1_A 79 VDIFDFNG----SFIPGLPRF---AADNPILLVGNKADLLPR-SVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMA 150 (369)
T ss_dssp EETTCSGG----GCCSSHHHH---CTTSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHH
T ss_pred EECCCCCC----chhhHHHHH---hCCCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHH
Confidence 55555442 366555322 136799999999999753 3334444444 555676 68999999999999
Q ss_pred HHHHHHHHH
Q psy1416 134 EMFMAITNL 142 (177)
Q Consensus 134 ~~f~~~~~~ 142 (177)
+++..+.+.
T Consensus 151 ~L~~~I~~~ 159 (369)
T 3ec1_A 151 KVMEAINRY 159 (369)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999888654
No 155
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.13 E-value=3.9e-07 Score=74.86 Aligned_cols=78 Identities=9% Similarity=0.066 Sum_probs=45.5
Q ss_pred ccccchh-hhhcccc--hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCH--HHHHHHHHHcCCcEEEecCCCCCCHHH
Q psy1416 60 VCTVLNE-CAWLGCG--WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLT--EDAQRFANQMGIQLFETSAKDNINVEE 134 (177)
Q Consensus 60 ~~dit~~-~Sf~~~~--w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~--~~~~~~a~~~~~~~~e~Sak~~~~v~~ 134 (177)
..+++.. .+|..+. |+..+. ..+|+|+|+||+|+...+.+.. +++..++..++++||++||+++.++++
T Consensus 143 L~ldePt~~~L~~~d~~~lk~L~------~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~ 216 (418)
T 2qag_C 143 LYFIAPSGHGLKPLDIEFMKRLH------EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENK 216 (418)
T ss_dssp EEECCC-CCSCCHHHHHHHHHHT------TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC---------
T ss_pred EEEecCcccCCCHHHHHHHHHHh------ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHH
Confidence 4555544 4677664 776552 2689999999999976666654 678888899999999999999999999
Q ss_pred HHHHHHHHH
Q psy1416 135 MFMAITNLV 143 (177)
Q Consensus 135 ~f~~~~~~~ 143 (177)
+|..+...+
T Consensus 217 ~~~~l~~~i 225 (418)
T 2qag_C 217 LVKKIKDRL 225 (418)
T ss_dssp --------C
T ss_pred HHHHHHhhC
Confidence 988887654
No 156
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.11 E-value=3e-06 Score=72.51 Aligned_cols=76 Identities=20% Similarity=0.191 Sum_probs=54.6
Q ss_pred cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC---cEEEecCCCCCCHHHHH
Q psy1416 61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI---QLFETSAKDNINVEEMF 136 (177)
Q Consensus 61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~---~~~e~Sak~~~~v~~~f 136 (177)
.|.++..++.... |..... .++|+++|+||+|+...+ ..+...+++..++. .++++||++|.||+++|
T Consensus 104 VDa~~gv~~qt~~~~~~a~~------~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Ll 175 (600)
T 2ywe_A 104 IDASQGIEAQTVANFWKAVE------QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEIL 175 (600)
T ss_dssp EETTTBCCHHHHHHHHHHHH------TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHH
T ss_pred EECCCCccHHHHHHHHHHHH------CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHH
Confidence 5556665565555 543221 378999999999997643 22334556666676 49999999999999999
Q ss_pred HHHHHHHH
Q psy1416 137 MAITNLVL 144 (177)
Q Consensus 137 ~~~~~~~~ 144 (177)
..+++.+.
T Consensus 176 e~I~~~lp 183 (600)
T 2ywe_A 176 EAIVNRIP 183 (600)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhcc
Confidence 99987664
No 157
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.08 E-value=3.4e-06 Score=68.01 Aligned_cols=84 Identities=13% Similarity=-0.007 Sum_probs=53.3
Q ss_pred cccchhh--hhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCcc-CHHHHHHHHHHc---CCcEEEecCCCCCCHH
Q psy1416 61 CTVLNEC--AWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVV-LTEDAQRFANQM---GIQLFETSAKDNINVE 133 (177)
Q Consensus 61 ~dit~~~--Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v-~~~~~~~~a~~~---~~~~~e~Sak~~~~v~ 133 (177)
.|+++.. ++..+. |...+... ...+.|+++|+||+|+.+.... ..+.+..++..+ +..++++||++|.|++
T Consensus 265 vD~s~~~~~~~~~~~~~~~~L~~l--~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~ 342 (364)
T 2qtf_A 265 IDSTFSENLLIETLQSSFEILREI--GVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLE 342 (364)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHH--TCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHH
T ss_pred EECCCCcchHHHHHHHHHHHHHHh--CcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHH
Confidence 4555554 444443 44333211 1246899999999999754310 012343455555 2368999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1416 134 EMFMAITNLVLRS 146 (177)
Q Consensus 134 ~~f~~~~~~~~~~ 146 (177)
++|..+.+.+...
T Consensus 343 ~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 343 LLRDKIYQLATQL 355 (364)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc
Confidence 9999998877654
No 158
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.00 E-value=5.4e-06 Score=65.05 Aligned_cols=57 Identities=26% Similarity=0.304 Sum_probs=44.7
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~f~~~~~~~ 143 (177)
+.|++||+||+|+...+....+....+++.++. .++.+||++|.|++++|..+.+.+
T Consensus 116 ~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 116 KAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp SSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence 689999999999976333334555666666675 699999999999999999988643
No 159
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.99 E-value=3.1e-06 Score=69.13 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=42.8
Q ss_pred CcEEEEeeCCCCcCCCc--cCHHHHHHHHHH---cCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 88 SGLRLVGNKNDDPQKKV--VLTEDAQRFANQ---MGIQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 88 ~~~ilvgnK~Dl~~~~~--v~~~~~~~~a~~---~~~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
.|+++|+||+|+.+... ...++...++.. .+++++++||++|.||+++|..|.+.+.
T Consensus 138 ~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 138 KNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp CCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 47999999999975322 223455555554 3578999999999999999999886553
No 160
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.98 E-value=3.7e-06 Score=68.59 Aligned_cols=80 Identities=16% Similarity=0.157 Sum_probs=50.5
Q ss_pred cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCcc--CHHHHHHHHHHc---CCcEEEecCCCCCCHHH
Q psy1416 61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVV--LTEDAQRFANQM---GIQLFETSAKDNINVEE 134 (177)
Q Consensus 61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v--~~~~~~~~a~~~---~~~~~e~Sak~~~~v~~ 134 (177)
.|.++..++.... |+..+.. . ...|+++|+||+||.+.... ..++...+.... +++++++||++|.||++
T Consensus 106 vda~~~~~~~qt~~~~~~~~~-~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~ 181 (403)
T 3sjy_A 106 VAANEPFPQPQTREHFVALGI-I---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDS 181 (403)
T ss_dssp EETTSCSSCHHHHHHHHHHHH-H---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHH
T ss_pred EECCCCCCcHHHHHHHHHHHH-c---CCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHH
Confidence 4555554455544 6544421 1 12489999999999753221 112223333222 56899999999999999
Q ss_pred HHHHHHHHHH
Q psy1416 135 MFMAITNLVL 144 (177)
Q Consensus 135 ~f~~~~~~~~ 144 (177)
+|..+.+.+.
T Consensus 182 L~~~l~~~l~ 191 (403)
T 3sjy_A 182 LIEGIEEYIK 191 (403)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHhCC
Confidence 9999887653
No 161
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.97 E-value=4.1e-06 Score=69.91 Aligned_cols=75 Identities=13% Similarity=0.015 Sum_probs=41.3
Q ss_pred cccchhhhhcccc---hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHHHHH----HHHHc-----CCcEEEecCCC
Q psy1416 61 CTVLNECAWLGCG---WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQR----FANQM-----GIQLFETSAKD 128 (177)
Q Consensus 61 ~dit~~~Sf~~~~---w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~~~~----~a~~~-----~~~~~e~Sak~ 128 (177)
.|.++..++..+. |..+...........|+|||+||+||.+.+....++... +.... +++|+++||++
T Consensus 142 vDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~ 221 (483)
T 3p26_A 142 VDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFS 221 (483)
T ss_dssp EECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSS
T ss_pred EECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeec
Confidence 6667665555432 322221111111234699999999998754444443333 33333 35799999999
Q ss_pred CCCHHHH
Q psy1416 129 NINVEEM 135 (177)
Q Consensus 129 ~~~v~~~ 135 (177)
|.||+++
T Consensus 222 g~gi~el 228 (483)
T 3p26_A 222 GEGVYKI 228 (483)
T ss_dssp CTTSSSS
T ss_pred CCCcccc
Confidence 9999864
No 162
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.93 E-value=2.5e-05 Score=66.80 Aligned_cols=77 Identities=12% Similarity=0.126 Sum_probs=50.1
Q ss_pred cccch---hhhhcccchhhhhhhhhccCCCCcEEEEeeCCCCcCCCccC-------------H-------H---HHHHHH
Q psy1416 61 CTVLN---ECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVL-------------T-------E---DAQRFA 114 (177)
Q Consensus 61 ~dit~---~~Sf~~~~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~-------------~-------~---~~~~~a 114 (177)
.|.++ ++|+..+.++.. .++|+++|+||+|+....... . + +.....
T Consensus 101 vDa~~Gv~~qT~e~l~~l~~--------~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L 172 (594)
T 1g7s_A 101 VDINEGFKPQTQEALNILRM--------YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKL 172 (594)
T ss_dssp EETTTCCCHHHHHHHHHHHH--------TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCccHhHHHHHHHHHH--------cCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 67777 778776654321 368999999999996421100 0 0 111111
Q ss_pred HHcC---------------CcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416 115 NQMG---------------IQLFETSAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 115 ~~~~---------------~~~~e~Sak~~~~v~~~f~~~~~~~~~ 145 (177)
.+.+ .+++.+||++|.||++++..+...+..
T Consensus 173 ~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 173 HEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 1222 379999999999999999998876653
No 163
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.92 E-value=2e-06 Score=70.87 Aligned_cols=53 Identities=15% Similarity=0.292 Sum_probs=38.3
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
+.|++||+||+|+...+. ++.++. ..++ .++++||++|.||+++|..+++.+.
T Consensus 111 ~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 111 KKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp CSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred CCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 689999999999975321 111222 3454 7999999999999999999987764
No 164
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.80 E-value=3.3e-05 Score=56.22 Aligned_cols=31 Identities=45% Similarity=0.647 Sum_probs=27.9
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVLRSKK 32 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~ 32 (177)
+++|++|||++|.||+++|..|++.+++...
T Consensus 148 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 178 (207)
T 1vg8_A 148 NIPYFETSAKEAINVEQAFQTIARNALKQET 178 (207)
T ss_dssp SCCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 5789999999999999999999999987654
No 165
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.75 E-value=4.2e-06 Score=68.96 Aligned_cols=76 Identities=11% Similarity=0.025 Sum_probs=51.4
Q ss_pred cccchhhhhcccc-hhhhhhhhhc--cCCC-CcEEEEeeCCCCcCC--C----ccCHHHHHHHHHHcC-----CcEEEec
Q psy1416 61 CTVLNECAWLGCG-WMTICPIIYC--WLFP-SGLRLVGNKNDDPQK--K----VVLTEDAQRFANQMG-----IQLFETS 125 (177)
Q Consensus 61 ~dit~~~Sf~~~~-w~~~~~~~~~--~~~~-~~~ilvgnK~Dl~~~--~----~v~~~~~~~~a~~~~-----~~~~e~S 125 (177)
.|.++ .||+++. |..+...... ...+ .|++||+||+||.+. . ....++...++..++ ++|+++|
T Consensus 115 vDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iS 193 (435)
T 1jny_A 115 VSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVV 193 (435)
T ss_dssp EECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECB
T ss_pred EECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEee
Confidence 67777 8888775 7654321111 0113 368999999999752 1 122456777777776 6799999
Q ss_pred CCCCCCHHHHHH
Q psy1416 126 AKDNINVEEMFM 137 (177)
Q Consensus 126 ak~~~~v~~~f~ 137 (177)
|++|.||.++|.
T Consensus 194 A~~g~~v~e~~~ 205 (435)
T 1jny_A 194 APSGDNITHKSE 205 (435)
T ss_dssp TTTTBTTTBCCS
T ss_pred cccCcccccccc
Confidence 999999987764
No 166
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.75 E-value=1.7e-05 Score=58.14 Aligned_cols=58 Identities=9% Similarity=0.037 Sum_probs=43.9
Q ss_pred CCcEEEEeeCCCCcCC--CccCHHHHHHHHHHcC--CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQK--KVVLTEDAQRFANQMG--IQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~--~~v~~~~~~~~a~~~~--~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
.+|+++|+||+|+... ++...+.+..++.+.+ +.++++||+++.+++++|..+.+.+.
T Consensus 137 ~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 137 NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred CCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 6889999999998642 2222355666666654 56889999999999999998877653
No 167
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.75 E-value=3.4e-05 Score=58.57 Aligned_cols=56 Identities=14% Similarity=0.030 Sum_probs=40.3
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHH----------------------------HHHHcC--CcEEEecCCCCCCHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQR----------------------------FANQMG--IQLFETSAKDNINVEEMF 136 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~----------------------------~a~~~~--~~~~e~Sak~~~~v~~~f 136 (177)
+.|+++|+||+|+...+.+ ++... ++++++ .+++++||++|.||+++|
T Consensus 171 ~~p~~iv~NK~D~~~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 248 (262)
T 1yrb_A 171 GATTIPALNKVDLLSEEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLE 248 (262)
T ss_dssp TSCEEEEECCGGGCCHHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHH
T ss_pred CCCeEEEEecccccccccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHH
Confidence 6789999999999754321 11111 124443 479999999999999999
Q ss_pred HHHHHHHH
Q psy1416 137 MAITNLVL 144 (177)
Q Consensus 137 ~~~~~~~~ 144 (177)
..+.+.+.
T Consensus 249 ~~i~~~~~ 256 (262)
T 1yrb_A 249 TLAYEHYC 256 (262)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99887664
No 168
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.72 E-value=8.2e-06 Score=67.83 Aligned_cols=74 Identities=18% Similarity=0.175 Sum_probs=49.5
Q ss_pred cccchh---hhhcccc-hhhhhhhhhccCCCCc-EEEEeeCCCCcCCC------ccCHHHHHHHHHHc-C------CcEE
Q psy1416 61 CTVLNE---CAWLGCG-WMTICPIIYCWLFPSG-LRLVGNKNDDPQKK------VVLTEDAQRFANQM-G------IQLF 122 (177)
Q Consensus 61 ~dit~~---~Sf~~~~-w~~~~~~~~~~~~~~~-~ilvgnK~Dl~~~~------~v~~~~~~~~a~~~-~------~~~~ 122 (177)
.|.++. .||.... |...+..... .++| +|||+||+||.... ....++...++... + ++|+
T Consensus 152 vDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i 229 (467)
T 1r5b_A 152 ISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYM 229 (467)
T ss_dssp EECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEE
T ss_pred EeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEE
Confidence 566664 6787664 6654422221 3576 99999999995311 11234566777766 3 5699
Q ss_pred EecCCCCCCHHHHH
Q psy1416 123 ETSAKDNINVEEMF 136 (177)
Q Consensus 123 e~Sak~~~~v~~~f 136 (177)
++||++|.||+++|
T Consensus 230 ~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 230 PVSAYTGQNVKDRV 243 (467)
T ss_dssp ECBTTTTBTTSSCC
T ss_pred eccccccccccccc
Confidence 99999999999877
No 169
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.68 E-value=7.3e-06 Score=69.27 Aligned_cols=56 Identities=20% Similarity=0.166 Sum_probs=39.1
Q ss_pred CCcEEEEeeCCCCcCCCc--cCHHHHHHH---HHHc--CCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKV--VLTEDAQRF---ANQM--GIQLFETSAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~--v~~~~~~~~---a~~~--~~~~~e~Sak~~~~v~~~f~~~~~~~ 143 (177)
++|++||+||+|+.+.+. +.. +...+ +..+ .++|+++||++|.||+++|..+...+
T Consensus 104 ~vPiIVViNKiDl~~~~~~~v~~-~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 104 HVPIVLAINKCDKAEADPEKVKK-ELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp TCCEEECCBSGGGTTTSCCSSSS-HHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred CCcEEEEEecccccccchHHHHH-HHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence 689999999999974321 111 11111 1222 24799999999999999999988655
No 170
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.67 E-value=6.7e-05 Score=54.72 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=28.9
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 33 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~~ 33 (177)
++++|+||||++|.||+++|..|++.+.+....
T Consensus 143 ~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~ 175 (206)
T 2bcg_Y 143 NKMPFLETSALDSTNVEDAFLTMARQIKESMSQ 175 (206)
T ss_dssp TTCCEEECCTTTCTTHHHHHHHHHHHHHHHCCH
T ss_pred cCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 367899999999999999999999999876443
No 171
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.66 E-value=2.9e-05 Score=62.18 Aligned_cols=58 Identities=16% Similarity=0.098 Sum_probs=40.8
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHH----------cCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQ----------MGIQLFETSAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~----------~~~~~~e~Sak~~~~v~~~f~~~~~~~~~ 145 (177)
..|++||.||+|+....... .....+... ++.+++.+||++|.||+++|..+.+.+..
T Consensus 217 ~~p~ivVlNK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 217 ELADIVVVNKADGEHHKEAR-LAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp GGCSEEEEECCCGGGHHHHH-HHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCCcChhHHH-HHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35899999999996432211 111222221 25789999999999999999999887754
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.64 E-value=3.7e-06 Score=65.26 Aligned_cols=58 Identities=16% Similarity=-0.048 Sum_probs=39.6
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHHHHHH--cC-CcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ--MG-IQLFETSAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~--~~-~~~~e~Sak~~~~v~~~f~~~~~~~ 143 (177)
.+.|+++|+||+|+...+....+........ .+ .+++++||++|.||+++|..+.+..
T Consensus 191 ~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 191 QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 3689999999999976544323222210001 12 3578999999999999999988743
No 173
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.61 E-value=6.2e-05 Score=58.54 Aligned_cols=58 Identities=14% Similarity=0.193 Sum_probs=42.8
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~~~~ 146 (177)
+.|++||.||+||.+... .+....+.++.+.+++.+||+++.|+++++..+.+.+...
T Consensus 50 ~kp~ilVlNK~DL~~~~~--~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 50 NKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp SSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccCCHHH--HHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 678999999999975211 1222334445578999999999999999998887766543
No 174
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.59 E-value=4.1e-06 Score=70.23 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=38.3
Q ss_pred CCCcEEEEeeCCCCcCC--CccCHH--HHHHHHHHcC--CcEEEecCCCCCCHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQK--KVVLTE--DAQRFANQMG--IQLFETSAKDNINVEEMFMAITN 141 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~--~~v~~~--~~~~~a~~~~--~~~~e~Sak~~~~v~~~f~~~~~ 141 (177)
.++|+++|+||+|+... ..+..+ +...+++.++ ++|+++||++|.||+++|..++.
T Consensus 102 ~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 102 AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 36899999999999642 111111 0011223333 68999999999999999998874
No 175
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.58 E-value=1.9e-05 Score=64.22 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=41.6
Q ss_pred CCc-EEEEeeCCCCcCCCc---cCHHHHHHHHHHcC-----CcEEEecCCCCCC----------HHHHHHHHHHHH
Q psy1416 87 PSG-LRLVGNKNDDPQKKV---VLTEDAQRFANQMG-----IQLFETSAKDNIN----------VEEMFMAITNLV 143 (177)
Q Consensus 87 ~~~-~ilvgnK~Dl~~~~~---v~~~~~~~~a~~~~-----~~~~e~Sak~~~~----------v~~~f~~~~~~~ 143 (177)
++| +++|+||+|+.+... ...++..++++.++ ++|+++||++|.| |+++|..+.+.+
T Consensus 118 ~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 118 GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 577 789999999974221 12346677777776 5899999999775 788887776544
No 176
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.53 E-value=5.4e-05 Score=61.10 Aligned_cols=59 Identities=7% Similarity=-0.008 Sum_probs=43.4
Q ss_pred CCcE-EEEee-CCCCcCCCccCH--HHHHHHHHHcC---CcEEE--ecCCC---CCCHHHHHHHHHHHHHHH
Q psy1416 87 PSGL-RLVGN-KNDDPQKKVVLT--EDAQRFANQMG---IQLFE--TSAKD---NINVEEMFMAITNLVLRS 146 (177)
Q Consensus 87 ~~~~-ilvgn-K~Dl~~~~~v~~--~~~~~~a~~~~---~~~~e--~Sak~---~~~v~~~f~~~~~~~~~~ 146 (177)
++|. ++|.| |+|+ +.+.+.. ++...++...+ +++++ +||++ +.||+++|..+.+.+...
T Consensus 111 ~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 111 GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKI 181 (370)
T ss_dssp TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcccc
Confidence 4666 88888 9999 5332222 45555655543 68999 99999 999999999998876543
No 177
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.49 E-value=0.00013 Score=61.66 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.3
Q ss_pred cEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 120 QLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 120 ~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
++|.+||++|.||+++|..+++.+.
T Consensus 252 PV~~gSA~~~~GV~~Lld~i~~~~p 276 (528)
T 3tr5_A 252 PIFFGSAINNFGVGELLDAFVKEAP 276 (528)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHSC
T ss_pred EEEeccccCCccHHHHHHHHHHhCC
Confidence 6889999999999999999987764
No 178
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.47 E-value=7.7e-05 Score=56.06 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=42.1
Q ss_pred CCcEEEEeeCCCCcCCCccC------HHHHHHHHHHcCCcEEEecCCCC-----CCHHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVL------TEDAQRFANQMGIQLFETSAKDN-----INVEEMFMAITNLVLR 145 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~------~~~~~~~a~~~~~~~~e~Sak~~-----~~v~~~f~~~~~~~~~ 145 (177)
..|++||+||+|+...+.+. .+....+++..+..|+..+++.+ .+|.++|..+.+.+.+
T Consensus 145 ~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 145 RSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp GGGEEEEEECGGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 35899999999987554443 24678888899988888887754 6888888887776643
No 179
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.46 E-value=2.5e-05 Score=63.62 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=33.3
Q ss_pred CCc-EEEEeeCCCCcCCCc---cCHHHHHHHHHHcC-----CcEEEecCCCCCC
Q psy1416 87 PSG-LRLVGNKNDDPQKKV---VLTEDAQRFANQMG-----IQLFETSAKDNIN 131 (177)
Q Consensus 87 ~~~-~ilvgnK~Dl~~~~~---v~~~~~~~~a~~~~-----~~~~e~Sak~~~~ 131 (177)
++| +++|+||+|+..... ...++...++..++ .+++++||++|.|
T Consensus 127 ~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 127 GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 577 899999999974321 11235666777765 5799999999987
No 180
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.45 E-value=1.6e-05 Score=61.37 Aligned_cols=57 Identities=11% Similarity=0.132 Sum_probs=32.3
Q ss_pred CCcEEEEeeCCCCcCCCccC--HHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVL--TEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~--~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~~ 143 (177)
.+|+++|+||+|+.....+. .+........+++++|++||+++.++++++..+.+.+
T Consensus 144 ~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 144 KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 68999999999986432221 1334455567789999999999999999998876543
No 181
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.41 E-value=3.5e-05 Score=63.38 Aligned_cols=50 Identities=20% Similarity=0.115 Sum_probs=38.1
Q ss_pred cEEEEeeCCCCcCCCc--c--CHHHHHHHHHHcC-----CcEEEecCCCCCCHHHHHHH
Q psy1416 89 GLRLVGNKNDDPQKKV--V--LTEDAQRFANQMG-----IQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 89 ~~ilvgnK~Dl~~~~~--v--~~~~~~~~a~~~~-----~~~~e~Sak~~~~v~~~f~~ 138 (177)
|++||+||+||.+... + ..++...+++.++ ++++++||++|.||+++|..
T Consensus 159 ~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 159 HIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp EEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred eEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 6999999999975211 1 2355667777777 67999999999999987554
No 182
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.40 E-value=0.00013 Score=66.50 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=41.6
Q ss_pred CCc-EEEEeeCCCCcCCCc---cCHHHHHHHHHHcC-----CcEEEecCCCC--------CCHHHHHHHHHHHH
Q psy1416 87 PSG-LRLVGNKNDDPQKKV---VLTEDAQRFANQMG-----IQLFETSAKDN--------INVEEMFMAITNLV 143 (177)
Q Consensus 87 ~~~-~ilvgnK~Dl~~~~~---v~~~~~~~~a~~~~-----~~~~e~Sak~~--------~~v~~~f~~~~~~~ 143 (177)
++| +|||+||+|+.+.+. ...++...++..++ ++|+++||++| .||+++|..+.+.+
T Consensus 411 gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 411 GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 577 799999999975322 12346677777776 58999999999 35777777776544
No 183
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.36 E-value=0.00014 Score=59.96 Aligned_cols=51 Identities=25% Similarity=0.251 Sum_probs=36.2
Q ss_pred CCc-EEEEeeCCCCcCC------CccCHHHHHHHHHHcC------CcEEEecCCCCCCHHHHHH
Q psy1416 87 PSG-LRLVGNKNDDPQK------KVVLTEDAQRFANQMG------IQLFETSAKDNINVEEMFM 137 (177)
Q Consensus 87 ~~~-~ilvgnK~Dl~~~------~~v~~~~~~~~a~~~~------~~~~e~Sak~~~~v~~~f~ 137 (177)
++| ++||+||+||... .....++...+++.++ ++|+++||++|.||++++.
T Consensus 154 ~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 154 GVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 466 9999999999531 1112344555666655 4699999999999999765
No 184
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.35 E-value=5.5e-05 Score=62.56 Aligned_cols=54 Identities=15% Similarity=0.273 Sum_probs=34.3
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCC-cEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
.+.|++||+||+|+...+. ...++. ..+. .++++||++|.||.++|..+.+.+.
T Consensus 130 ~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 130 TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred cCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEeecccccchHHHHHHHHhhcc
Confidence 3689999999999864321 111111 2232 5789999999999999999987653
No 185
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.35 E-value=3.3e-05 Score=58.78 Aligned_cols=57 Identities=14% Similarity=0.260 Sum_probs=41.4
Q ss_pred CcEEEEeeCCCCcCCCccCH-------HHHHHHHHHcCCcE-----EEecCCCCCCHHHHHHHHHHHHHH
Q psy1416 88 SGLRLVGNKNDDPQKKVVLT-------EDAQRFANQMGIQL-----FETSAKDNINVEEMFMAITNLVLR 145 (177)
Q Consensus 88 ~~~ilvgnK~Dl~~~~~v~~-------~~~~~~a~~~~~~~-----~e~Sak~~~~v~~~f~~~~~~~~~ 145 (177)
++++||+||+|+.... +.. +++..++...+..+ +++||++|.||+++|..+.+.+..
T Consensus 140 ~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 140 HTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp GEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 4556666699997532 222 33555777776543 789999999999999999988765
No 186
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.00017 Score=51.83 Aligned_cols=46 Identities=7% Similarity=-0.113 Sum_probs=33.8
Q ss_pred ccccc-hhhhhcccc-hhhhhhhhhc--cCCCCcEEEEeeCCCCcCCCcc
Q psy1416 60 VCTVL-NECAWLGCG-WMTICPIIYC--WLFPSGLRLVGNKNDDPQKKVV 105 (177)
Q Consensus 60 ~~dit-~~~Sf~~~~-w~~~~~~~~~--~~~~~~~ilvgnK~Dl~~~~~v 105 (177)
+.|++ +..+|..+. |+..+..... ...++|++|||||+||...+.+
T Consensus 125 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 125 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 174 (193)
T ss_dssp EEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred EEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence 47888 899999886 8866532221 2357999999999999876543
No 187
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.24 E-value=0.00029 Score=61.05 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=23.5
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 119 IQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 119 ~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
++++++||++|.||+++|..+++.+.
T Consensus 248 ~pv~~~SA~~~~Gv~~Ll~~i~~~lp 273 (665)
T 2dy1_A 248 YPVALASGEREIGVLPLLELILEALP 273 (665)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred eEEEEeecccCcCHHHHHHHHHHhCC
Confidence 47999999999999999999998774
No 188
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.00011 Score=63.06 Aligned_cols=49 Identities=16% Similarity=0.080 Sum_probs=35.0
Q ss_pred CcEEEEeeCCCCcCCCccCH----HHHHHHHHHcC-----CcEEEecCCCCCCHHHHH
Q psy1416 88 SGLRLVGNKNDDPQKKVVLT----EDAQRFANQMG-----IQLFETSAKDNINVEEMF 136 (177)
Q Consensus 88 ~~~ilvgnK~Dl~~~~~v~~----~~~~~~a~~~~-----~~~~e~Sak~~~~v~~~f 136 (177)
.|+|||+||+|+.+.+.... ++...++...+ ++|+++||++|.||+++.
T Consensus 306 ~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 306 HNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp CEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred CeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 45999999999976433222 33344444444 589999999999998763
No 189
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.18 E-value=0.00014 Score=60.23 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=36.3
Q ss_pred CCc-EEEEeeCCCCcCCCc----cCHHHHHHHHHHcC-----CcEEEecCCCCCCHHHHH
Q psy1416 87 PSG-LRLVGNKNDDPQKKV----VLTEDAQRFANQMG-----IQLFETSAKDNINVEEMF 136 (177)
Q Consensus 87 ~~~-~ilvgnK~Dl~~~~~----v~~~~~~~~a~~~~-----~~~~e~Sak~~~~v~~~f 136 (177)
++| ++||+||+||.+... ...++...++..++ ++|+++||++|.||.++.
T Consensus 144 ~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 144 GVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp TCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred CCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence 455 999999999974211 12345666777766 689999999999997653
No 190
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.11 E-value=7.2e-05 Score=59.88 Aligned_cols=57 Identities=11% Similarity=-0.092 Sum_probs=43.6
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNL 142 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~ 142 (177)
.+.|+++|+||+|+...+....+.+..++..++.+|+++|++++.+|++.+..+...
T Consensus 202 ~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~ 258 (360)
T 3t34_A 202 SGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAAR 258 (360)
T ss_dssp TCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHH
T ss_pred cCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHH
Confidence 367899999999998766555555555556677899999999999988776554443
No 191
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.06 E-value=0.0001 Score=58.57 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=26.2
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVLRSKK 32 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~~ 32 (177)
++.|||||||+ .||++||..|++.|+.+..
T Consensus 148 ~i~f~eTSAkd-~nV~eAFs~iv~~li~~~~ 177 (331)
T 3r7w_B 148 QVSFYLTSIFD-HSIYEAFSRIVQKLIPELS 177 (331)
T ss_dssp CEEEECCCSSS-SHHHHHHHHHHTTSSTTHH
T ss_pred CceEEEeccCC-CcHHHHHHHHHHHHHhhHH
Confidence 68999999998 5999999999999876543
No 192
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.96 E-value=0.00058 Score=54.30 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=39.1
Q ss_pred CCcEEEEeeCCCCcCCCccCH--HHHHHHHHH-------cCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLT--EDAQRFANQ-------MGIQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~--~~~~~~a~~-------~~~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
+.|.++|+||+|+.....+.. ++....... +..+++.+||++|.||++++..+.+.+.
T Consensus 194 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 194 EVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred cccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 357899999999964321111 112211112 1456899999999999999999988664
No 193
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.85 E-value=0.00067 Score=49.11 Aligned_cols=30 Identities=40% Similarity=0.713 Sum_probs=27.4
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVLRSK 31 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~ 31 (177)
|++|+++||++|.||+++|..|++.+.++.
T Consensus 144 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 173 (203)
T 1zbd_A 144 GFEFFEASAKDNINVKQTFERLVDVICEKM 173 (203)
T ss_dssp TCEEEECBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999987764
No 194
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.84 E-value=0.00056 Score=59.51 Aligned_cols=81 Identities=12% Similarity=0.132 Sum_probs=50.2
Q ss_pred cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHHH----------HHH-----HHHH--------
Q psy1416 61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTED----------AQR-----FANQ-------- 116 (177)
Q Consensus 61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~~----------~~~-----~a~~-------- 116 (177)
.|.++..++.... |...+. ..+.|+++|+||+|+...+.++.++ ... +...
T Consensus 208 vda~~~~s~~e~~~l~~~l~-----~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~ 282 (695)
T 2j69_A 208 MRASQPCTLGERRYLENYIK-----GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNI 282 (695)
T ss_dssp EETTSTTCHHHHHHHHHHTT-----TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBC
T ss_pred EeCCCccchhHHHHHHHHHH-----hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 4555555555554 543331 1256899999999996543222211 111 1111
Q ss_pred cCCcEEEecCC--------------CCCCHHHHHHHHHHHHHHH
Q psy1416 117 MGIQLFETSAK--------------DNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 117 ~~~~~~e~Sak--------------~~~~v~~~f~~~~~~~~~~ 146 (177)
...++|++||+ ++.|+++++..+.+.+...
T Consensus 283 ~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~~ 326 (695)
T 2j69_A 283 YDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTRE 326 (695)
T ss_dssp GGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHHh
Confidence 12469999999 9999999999998877543
No 195
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.00054 Score=50.65 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=26.5
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSK 31 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~ 31 (177)
++++|+||||++|.||+++|..|++.++++.
T Consensus 148 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 178 (223)
T 3cpj_B 148 NQLLFTETSALNSENVDKAFEELINTIYQKV 178 (223)
T ss_dssp TTCEEEECCCC-CCCHHHHHHHHHHHHTTCC
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 3678999999999999999999999987643
No 196
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.82 E-value=0.00091 Score=51.32 Aligned_cols=52 Identities=17% Similarity=0.070 Sum_probs=37.9
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITN 141 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~ 141 (177)
+.|.++|.||+||.+... .+....+.++.+.++ .+||+++.|+++++..+..
T Consensus 46 ~k~~iivlNK~DL~~~~~--~~~~~~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 46 RKETIILLNKVDIADEKT--TKKWVEFFKKQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TSEEEEEEECGGGSCHHH--HHHHHHHHHHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred CCCcEEEEECccCCCHHH--HHHHHHHHHHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 578999999999975321 122233444567888 9999999999998876654
No 197
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.74 E-value=0.00046 Score=58.99 Aligned_cols=47 Identities=17% Similarity=0.054 Sum_probs=31.9
Q ss_pred CCc-EEEEeeCCCCcCCCccC----HHHHHHHH-HHcCC-----cEEEecCCCCCCHH
Q psy1416 87 PSG-LRLVGNKNDDPQKKVVL----TEDAQRFA-NQMGI-----QLFETSAKDNINVE 133 (177)
Q Consensus 87 ~~~-~ilvgnK~Dl~~~~~v~----~~~~~~~a-~~~~~-----~~~e~Sak~~~~v~ 133 (177)
++| +|||+||+||....... ..+...+. ...++ +|+++||++|.||.
T Consensus 314 gip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 314 GISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp SCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred CCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 455 99999999997522111 23334444 44454 69999999999998
No 198
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.66 E-value=0.0013 Score=48.03 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=25.3
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITNLVLRS 30 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~~i~~~ 30 (177)
.+|+||||++|.||+++|..|++.+++.
T Consensus 154 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 154 AAYIECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence 3899999999999999999999988654
No 199
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.55 E-value=0.0048 Score=49.21 Aligned_cols=57 Identities=11% Similarity=0.070 Sum_probs=37.8
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHH----------HcCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFAN----------QMGIQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~----------~~~~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
..|.++|.||+|+...... ......+.. .++.+++.+||++|.|+++++..+.+.+.
T Consensus 212 ~~~~ivVlNK~Dl~~~~~~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 212 EMADLVAVTKSDGDLIVPA-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CSCSEEEECCCSGGGHHHH-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCCEEEEeeecCCCchhH-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 4578999999999632110 001112211 22457899999999999999999887653
No 200
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.54 E-value=4e-05 Score=61.33 Aligned_cols=56 Identities=16% Similarity=0.014 Sum_probs=36.9
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHH--HHHHHcC-CcEEEecCCCCCCHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQ--RFANQMG-IQLFETSAKDNINVEEMFMAITN 141 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~--~~a~~~~-~~~~e~Sak~~~~v~~~f~~~~~ 141 (177)
.+.|+++|+||+|+.+.+....+... .+...++ ..++.+||++|.|++++|..+.+
T Consensus 196 ~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 196 QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 46899999999999754431111111 0001112 24678999999999999988876
No 201
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.51 E-value=0.0015 Score=47.86 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=26.6
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNLVLRS 30 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~ 30 (177)
++++|+|+||++|.||+++|..|++.+...
T Consensus 147 ~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 147 KNYEYFEISAKTAHNFGLPFLHLARIFTGR 176 (218)
T ss_dssp CCCEEEEEBTTTTBTTTHHHHHHHHHHHCC
T ss_pred cCCcEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 367899999999999999999999988654
No 202
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.50 E-value=0.0015 Score=47.41 Aligned_cols=30 Identities=37% Similarity=0.649 Sum_probs=26.8
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVLRSK 31 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~~ 31 (177)
+++|+++||++|.||+++|..|++.+.+..
T Consensus 155 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 184 (213)
T 3cph_A 155 GIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184 (213)
T ss_dssp TCCEEECBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999886653
No 203
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.48 E-value=0.0029 Score=47.19 Aligned_cols=57 Identities=12% Similarity=-0.133 Sum_probs=41.1
Q ss_pred CCCcEEEEeeCC-CCcCCCccCHHHHHHHHHH----cCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKN-DDPQKKVVLTEDAQRFANQ----MGIQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 86 ~~~~~ilvgnK~-Dl~~~~~v~~~~~~~~a~~----~~~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
.++|++|.+||. |+. ..++..+..+...- .....+.|||++|+|+.+.+..|++.+.
T Consensus 161 ~gapLLVlANKqqDlp--~Ams~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 161 SGRPLLVLSCISQGDV--KRMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp SCSCEEEEEEESSTTS--CBCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred CCCeEEEEeCCCcCcc--CCCCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 478999999996 775 34555554433211 1234779999999999999999987654
No 204
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.41 E-value=0.0036 Score=48.63 Aligned_cols=59 Identities=10% Similarity=-0.112 Sum_probs=37.4
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCC------CCCHHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKD------NINVEEMFMAITNLVL 144 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~------~~~v~~~f~~~~~~~~ 144 (177)
.+.|+++|+||+|+........+........++..|+++|+.+ +.|+++++..+...+.
T Consensus 197 ~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 197 EGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp SCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 3689999999999975543222222210011236788887765 6788888887766554
No 205
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.41 E-value=0.0025 Score=48.23 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=43.8
Q ss_pred CCcEEEEeeCCCCcCCCcc------CHHHHHHHHHHcCCcEEEecCCC-----CCCHHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVV------LTEDAQRFANQMGIQLFETSAKD-----NINVEEMFMAITNLVLR 145 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v------~~~~~~~~a~~~~~~~~e~Sak~-----~~~v~~~f~~~~~~~~~ 145 (177)
+.|+|||+||.||...... ..+....+.+..+..|+..+++. +.+|++++..+.+.+.+
T Consensus 139 ~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 139 KWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp GGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 6799999999999753211 11346777888888887776655 58999999998877765
No 206
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.25 E-value=0.0017 Score=47.72 Aligned_cols=29 Identities=28% Similarity=0.492 Sum_probs=26.2
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVLRS 30 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~ 30 (177)
++.|+||||++|.||+++|..|++.++..
T Consensus 148 ~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 148 NLQYYDISAKSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp TCEEEECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 57899999999999999999999988653
No 207
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.07 E-value=0.011 Score=46.30 Aligned_cols=57 Identities=12% Similarity=-0.134 Sum_probs=40.9
Q ss_pred CCCcEEEEeeC-CCCcCCCccCHHHHHHHHHH----cCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 86 FPSGLRLVGNK-NDDPQKKVVLTEDAQRFANQ----MGIQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 86 ~~~~~ilvgnK-~Dl~~~~~v~~~~~~~~a~~----~~~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
.++|++|.+|| -|+. ..++..+..+...- .......|||++|+|+.+.+..+++.+.
T Consensus 246 ~~apLLVfANKkQDlp--~Ams~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 246 SGRPLLVLSCISQGDV--KRMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp TTCCEEEEEEESSTTS--CBCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred CCCeEEEEeCCccccc--CCCCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 47899999997 4885 34555544432211 1234779999999999999999997764
No 208
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.02 E-value=0.005 Score=49.42 Aligned_cols=50 Identities=14% Similarity=0.071 Sum_probs=35.8
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHH---HcCCcEEEecCCCCCCHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFAN---QMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~---~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
+.|.+||.||+||.+... .+....|.. ..|++.+.+||+++.+++++-..
T Consensus 160 ~~~~iivlNK~DL~~~~~--~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 160 QVEPLIVLNKIDLLDDEG--MDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEA 212 (358)
T ss_dssp TCEEEEEEECGGGCCHHH--HHHHHHHHHHHHTTTCCEEECBTTTTBTHHHHHHH
T ss_pred CCCEEEEEECccCCCchh--HHHHHHHHHHHHhCCCcEEEEecCCCcCHHHHHHh
Confidence 578899999999975321 111333333 46788999999999999987654
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.01 E-value=0.011 Score=46.91 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=36.9
Q ss_pred CcEEEEeeCCCCcCCCccCHHHHHHHHHH----------cCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 88 SGLRLVGNKNDDPQKKVVLTEDAQRFANQ----------MGIQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 88 ~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~----------~~~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
.+.++|.||+|+.............+... +..+++.+||+++.|+++++..+.+...
T Consensus 194 ~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 194 LADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred cccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 35677779999753222111222233221 2456889999999999999988877553
No 210
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.82 E-value=0.011 Score=42.56 Aligned_cols=29 Identities=41% Similarity=0.523 Sum_probs=26.5
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVLRS 30 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~~ 30 (177)
++.|++|||+++.||+++|..|++.+++.
T Consensus 141 ~~~~~d~Sal~~~~i~~l~~~l~~~~~~~ 169 (199)
T 2f9l_A 141 NLSFIETSALDSTNVEEAFKNILTEIYRI 169 (199)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999999998764
No 211
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.69 E-value=0.0013 Score=51.72 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=36.5
Q ss_pred CCCcEEEEeeCCCCcCCCcc--CHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHH
Q psy1416 86 FPSGLRLVGNKNDDPQKKVV--LTEDAQRFANQMGIQLFETSAKDNINVEEMFMA 138 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v--~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 138 (177)
.++|.+||.||+||.+.... ..++...+-+..|.+.+.+||+++.++++++..
T Consensus 116 ~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 116 NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGG
T ss_pred CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHhh
Confidence 36889999999999764210 012223333345789999999999998877643
No 212
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.53 E-value=0.009 Score=45.49 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.9
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
|++|++|||++|.||+++|..|++.+
T Consensus 140 g~~vi~~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 140 GIPVVFTSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCEEEEEeeCCcCHHHHHHHHHHHh
Confidence 68999999999999999999998854
No 213
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.45 E-value=0.003 Score=49.37 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=16.3
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNLVLR 29 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~ 29 (177)
+|++|||+||++| ||+++|..+++.|..
T Consensus 187 ~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 187 HNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp TTCCCCCCC----------CHHHHHHHHT
T ss_pred cCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 4788999999999 999999999998854
No 214
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.27 E-value=0.0094 Score=45.85 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=23.1
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNL 26 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~ 26 (177)
|+++++|||++|.||+++|..|++.
T Consensus 137 g~~vi~~SA~~g~gi~el~~~i~~~ 161 (272)
T 3b1v_A 137 GVPVVATSALKQTGVDQVVKKAAHT 161 (272)
T ss_dssp TSCEEECBTTTTBSHHHHHHHHHHS
T ss_pred CCCEEEEEccCCCCHHHHHHHHHHH
Confidence 6899999999999999999999874
No 215
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=95.05 E-value=0.023 Score=49.37 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=22.3
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 119 IQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 119 ~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
.+.+..||++|.||+.++..++..+.
T Consensus 256 ~Pv~~gSA~~~~Gv~~LLd~i~~~lP 281 (691)
T 1dar_A 256 TPVFLGSALKNKGVQLLLDAVVDYLP 281 (691)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSC
T ss_pred eEEEEeecccCcCHHHHHHHHHHhCC
Confidence 46889999999999999988887764
No 216
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.51 E-value=0.011 Score=47.48 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=42.1
Q ss_pred CCcEEEEeeCCCCc--CC-CccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDP--QK-KVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITN 141 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~--~~-~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~ 141 (177)
..|+++|+||.|.. +. +....+....+++..+++++.+||++..+|.+++..-..
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~~~~ 258 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGEEAR 258 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHHHHH
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchHHHH
Confidence 46999999999843 22 134567788899999999999999998888877665333
No 217
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=94.25 E-value=0.1 Score=43.83 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=20.7
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 119 IQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 119 ~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
.+.|..||++|.||+.++..+...+.
T Consensus 252 ~Pv~~gSA~~~~Gv~~LLd~i~~~~P 277 (529)
T 2h5e_A 252 TPVFFGTALGNFGVDHMLDGLVEWAP 277 (529)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred eEEEeeecccCCCHHHHHHHHHHhCC
Confidence 36788899999999888888776654
No 218
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.04 E-value=0.033 Score=43.31 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.0
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
+.|+|||||+|.||+++|..+...+
T Consensus 147 ~~~~~~SAktg~gv~~lf~~l~gei 171 (301)
T 1u0l_A 147 YPIVKTSAKTGMGIEELKEYLKGKI 171 (301)
T ss_dssp SCEEECCTTTCTTHHHHHHHHSSSE
T ss_pred CcEEEEECCCCcCHHHHHHHhcCCe
Confidence 6799999999999999998877643
No 219
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.48 E-value=0.033 Score=42.31 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=23.1
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNL 26 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~ 26 (177)
|+++++|||++|.||+++|..|.+.
T Consensus 140 g~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 140 GCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999999874
No 220
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=93.42 E-value=0.0089 Score=48.54 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=33.1
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFM 137 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~ 137 (177)
..|+++|+||+|+. .. -..+...+.....+..++.+||+.+.++.+++.
T Consensus 214 ~kP~i~v~NK~D~~-~~-~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 214 NKPMVIAANKADAA-SD-EQIKRLVREEEKRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HSCEEEEEECGGGS-CH-HHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred CCCEEEEEeCcccc-ch-HHHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence 47999999999986 21 111222223333367899999999999876543
No 221
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=93.27 E-value=0.16 Score=44.16 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=21.9
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 119 IQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 119 ~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
.+.|..||++|.||+.++..+++.+.
T Consensus 254 ~Pv~~gSA~~~~Gv~~LLd~i~~~lP 279 (693)
T 2xex_A 254 YPVLCGTAFKNKGVQLMLDAVIDYLP 279 (693)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred eeEEEeecccCcCHHHHHHHHHHHCC
Confidence 36888999999999998888887764
No 222
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=93.16 E-value=0.18 Score=43.84 Aligned_cols=26 Identities=27% Similarity=0.217 Sum_probs=22.9
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 119 IQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 119 ~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
++.+..||+++.||+.++..++..+.
T Consensus 262 ~Pv~~gSa~~~~Gv~~LLd~i~~~lP 287 (704)
T 2rdo_7 262 ILVTCGSAFKNKGVQAMLDAVIDYLP 287 (704)
T ss_pred eEEEEeecccCccHHHHHHHHHHHCC
Confidence 46889999999999999999988775
No 223
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.93 E-value=0.062 Score=40.84 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=24.0
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
|+++++|||++|.||+++|..+++.+
T Consensus 139 g~~~~~~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 139 GVPVIPTNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp SSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999998865
No 224
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=92.72 E-value=0.022 Score=46.60 Aligned_cols=28 Identities=11% Similarity=0.167 Sum_probs=25.2
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNLVL 28 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~ 28 (177)
+|++|+++|||+|.||+++|..|++.+.
T Consensus 168 ~g~~v~~vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 168 YEAKVLLVSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp TTCCCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhhh
Confidence 3678999999999999999999999773
No 225
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=92.53 E-value=0.037 Score=46.47 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=20.2
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVLR 29 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~ 29 (177)
+++|++|||++|.||+++|..|++.+..
T Consensus 181 ~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 181 ENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp TTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred CCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 5679999999999999999999998754
No 226
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=92.34 E-value=0.033 Score=42.63 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=23.5
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
|+++++|||++|.||+++|..|++.+
T Consensus 142 g~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 142 GCPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp TSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999988754
No 227
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.22 E-value=0.1 Score=39.61 Aligned_cols=41 Identities=0% Similarity=-0.355 Sum_probs=23.9
Q ss_pred hhccc--chhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHH
Q psy1416 68 AWLGC--GWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTE 108 (177)
Q Consensus 68 Sf~~~--~w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~ 108 (177)
+|... .|+..+....+.....|+++|+||+|+...+.++.+
T Consensus 133 ~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~ 175 (270)
T 1h65_A 133 RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYD 175 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHH
Confidence 45444 276655322221112699999999999765544443
No 228
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.12 E-value=0.098 Score=39.53 Aligned_cols=35 Identities=9% Similarity=-0.166 Sum_probs=21.0
Q ss_pred hhhhhhhhhccCCCCcEEEEeeCCCCcCCCccCHH
Q psy1416 74 WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTE 108 (177)
Q Consensus 74 w~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~ 108 (177)
|+..+..........|+++|+||+|+...+....+
T Consensus 138 ~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e 172 (262)
T 3def_A 138 VVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYE 172 (262)
T ss_dssp HHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHH
T ss_pred HHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHH
Confidence 66655332222112489999999999655444443
No 229
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=92.09 E-value=0.084 Score=43.90 Aligned_cols=27 Identities=15% Similarity=0.078 Sum_probs=24.5
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVL 28 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~ 28 (177)
+++|+++|||+|.||+++|..|.+.+.
T Consensus 378 ~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 378 DRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp STTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 368999999999999999999999765
No 230
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.48 E-value=0.11 Score=40.39 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=22.0
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNL 26 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~ 26 (177)
|+++++|||++|.||+++|..+...
T Consensus 142 g~~~~~~SA~~g~gi~~L~~~l~G~ 166 (302)
T 2yv5_A 142 GYDVLKVSAKTGEGIDELVDYLEGF 166 (302)
T ss_dssp TCEEEECCTTTCTTHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHhhccCc
Confidence 6789999999999999999887654
No 231
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=91.28 E-value=0.17 Score=41.86 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.5
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
+.+++++|||+|.||+++|..|.+.+
T Consensus 357 ~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 357 ITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp CCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999999865
No 232
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=90.72 E-value=0.15 Score=42.38 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=23.0
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
.+++++|||+|.||+++|..|++.+
T Consensus 372 ~~~i~vSAktg~GI~eL~~~i~~~~ 396 (476)
T 3gee_A 372 TEVIGISALNGDGIDTLKQHMGDLV 396 (476)
T ss_dssp SCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHH
Confidence 4799999999999999999999866
No 233
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=90.57 E-value=0.15 Score=41.12 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=23.4
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
+++|+++||++|.||+++|..|.+.+
T Consensus 165 ~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 165 NVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp TCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred CCEEEEEECCCCcChHHHHHHHHHhC
Confidence 46899999999999999999998765
No 234
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=90.55 E-value=0.15 Score=39.61 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=22.8
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
.+++++||++|.||+++|..|++.+
T Consensus 156 ~~i~~vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 156 TEIVPISALKGANLDELVKTILKYL 180 (308)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhC
Confidence 5799999999999999999998865
No 235
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=90.39 E-value=0.067 Score=47.01 Aligned_cols=54 Identities=17% Similarity=0.023 Sum_probs=35.8
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHH----cC-CcEEEecCCCCCCHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQ----MG-IQLFETSAKDNINVEEMFMAITNL 142 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~----~~-~~~~e~Sak~~~~v~~~f~~~~~~ 142 (177)
+.|+++|.||+|+......... ... .+. .+ ..++.+||++|.|+++++..+.+.
T Consensus 217 g~pvIlVlNKiDlv~~~~~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 217 GQRTIGVITKLDLMDEGTDARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp CSSEEEEEECTTSSCTTCCSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred CCCEEEEEeCcccCCcchhhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 6799999999999754432221 111 001 12 235679999999999988887763
No 236
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.60 E-value=0.26 Score=39.00 Aligned_cols=28 Identities=11% Similarity=0.103 Sum_probs=24.5
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVLR 29 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~~ 29 (177)
+.+++++||++|.||+++|..|.+.+..
T Consensus 257 ~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 257 RPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999887643
No 237
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=89.44 E-value=0.18 Score=40.73 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=17.3
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
+++|+++||++|.||+++|..|.+.+
T Consensus 171 ~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 171 NAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp TCCEEEC------CHHHHHHHHHHHS
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 46899999999999999999998755
No 238
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=89.39 E-value=0.16 Score=39.44 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=23.3
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITNLVLR 29 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~~i~~ 29 (177)
++|+||||++ .+|.++|..+++.++.
T Consensus 156 ~~~~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 156 LIGFPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp CEEEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred eEEEEeeecC-ChHHHHHHHHHHHHcC
Confidence 7899999999 9999999999987643
No 239
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=87.75 E-value=0.32 Score=39.25 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=23.2
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
+++|+++||++|.||+++|..|.+.+
T Consensus 173 ~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 173 NAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp TCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 46899999999999999999988755
No 240
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=87.73 E-value=0.41 Score=39.68 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=24.0
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVL 28 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~ 28 (177)
+++|+++||++|.||+++|..|.+.+.
T Consensus 162 ~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 162 NSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp GCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 467999999999999999999998764
No 241
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=87.26 E-value=0.48 Score=37.93 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=33.4
Q ss_pred CCCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCC
Q psy1416 86 FPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKD 128 (177)
Q Consensus 86 ~~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~ 128 (177)
..-|+++|+||.|..-......+....++..++.+++.+||+.
T Consensus 198 t~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 198 TLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp TTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred cCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 3579999999999653223346777888888899999999874
No 242
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=86.88 E-value=0.23 Score=41.82 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=22.5
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
++|+++||++|.||+++|..|...+
T Consensus 142 ~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 142 VQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp EEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCchhHHHHHHHhh
Confidence 5799999999999999999998754
No 243
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=86.66 E-value=0.63 Score=37.91 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=24.6
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVL 28 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~ 28 (177)
++.++++||+++.||+++|..|++.+.
T Consensus 298 g~~vi~iSA~~g~gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 298 GLAVLPVSALTGAGLPALKEALHALVR 324 (416)
T ss_dssp TSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCccCHHHHHHHHHHHHH
Confidence 567999999999999999999999774
No 244
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=86.13 E-value=0.16 Score=40.50 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=16.2
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNLVLRS 30 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~i~~~ 30 (177)
+|++||++||++|.| ++.|..+++.|...
T Consensus 206 ~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 206 HNIKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp C-CCSCCCC----------CHHHHHHHHHT
T ss_pred CCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 368899999999999 99999999988654
No 245
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=85.82 E-value=1.1 Score=37.78 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=21.5
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 119 IQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 119 ~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
.+.+..||+++.||+.++..+++.+.
T Consensus 269 ~PV~~gSA~~~~Gv~~LLd~iv~~~P 294 (548)
T 3vqt_A 269 TPVFFGSAINNFGVREMLDMFVEFAP 294 (548)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSC
T ss_pred ceeeecccccCcCHHHHHHHHHHhCC
Confidence 35788899999999999888876654
No 246
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=83.63 E-value=1.1 Score=35.82 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.8
Q ss_pred cEEEeccCCCCCHHHHHHHHHHH
Q psy1416 4 QLFETSAKDNINVEEMFMAITNL 26 (177)
Q Consensus 4 ~f~EtSAk~~~nV~~~F~~l~~~ 26 (177)
.++++||++|.||+++|..|.+.
T Consensus 135 ~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 135 DVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHH
T ss_pred cEEEEeCCCCcCHHHHHhhhhhh
Confidence 68999999999999999998764
No 247
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=83.52 E-value=0.27 Score=41.11 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=21.3
Q ss_pred CcEEEeccCCCCCHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITN 25 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~ 25 (177)
++|+++||++|.||+++|..|+.
T Consensus 141 ~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 141 SQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp CEEEECCTTTCTTCTTHHHHTTT
T ss_pred ccEEEEeeeeccCcchhhhhhhh
Confidence 68999999999999999999875
No 248
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=82.95 E-value=0.23 Score=38.53 Aligned_cols=25 Identities=24% Similarity=0.146 Sum_probs=21.9
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
.+++++||++|.||+++|..|++.+
T Consensus 147 ~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 147 AEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp SEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999988744
No 249
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=81.49 E-value=0.15 Score=41.54 Aligned_cols=26 Identities=15% Similarity=0.341 Sum_probs=7.8
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
|++||++||+++.||+++|..|...|
T Consensus 200 ~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 200 KIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp TCCCCCCC-----------------C
T ss_pred CCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 68899999999999999999888765
No 250
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=81.41 E-value=1.7 Score=37.30 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=21.2
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 119 IQLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 119 ~~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
.+.+..||+++.||+.++..++..+.
T Consensus 213 ~Pv~~gSa~~~~Gv~~LLd~i~~~~p 238 (638)
T 3j25_A 213 FPLYHGSAKSNIGIDNLIEVITNKFY 238 (638)
T ss_dssp CCCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred ccccccccccCCCchhHhhhhhcccc
Confidence 46788999999999998887776543
No 251
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=81.20 E-value=0.74 Score=39.72 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=23.8
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITNLVL 28 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~~i~ 28 (177)
++++++||++|.||+++|..|++.+.
T Consensus 248 ~pv~~~SA~~~~Gv~~Ll~~i~~~lp 273 (665)
T 2dy1_A 248 YPVALASGEREIGVLPLLELILEALP 273 (665)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred eEEEEeecccCcCHHHHHHHHHHhCC
Confidence 58999999999999999999998764
No 252
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=79.88 E-value=1.6 Score=34.77 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=24.0
Q ss_pred CcEEE--eccCC---CCCHHHHHHHHHHHHHH
Q psy1416 3 IQLFE--TSAKD---NINVEEMFMAITNLVLR 29 (177)
Q Consensus 3 ~~f~E--tSAk~---~~nV~~~F~~l~~~i~~ 29 (177)
++|++ +||++ |.||+++|..|.+.+..
T Consensus 149 ~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 149 WECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp CEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred eEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 68999 99999 99999999999887643
No 253
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=79.14 E-value=0.26 Score=37.46 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=20.4
Q ss_pred cEEEeccCCCCCHHHHHHHHHH
Q psy1416 4 QLFETSAKDNINVEEMFMAITN 25 (177)
Q Consensus 4 ~f~EtSAk~~~nV~~~F~~l~~ 25 (177)
+++++||++|.||+++|..|++
T Consensus 228 ~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 228 GVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp ECCCCCCBCTTSCBCHHHHHHH
T ss_pred EEECCChhhccccccHHHHHHH
Confidence 5789999999999999999987
No 254
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=77.36 E-value=1.6 Score=34.30 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=22.8
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITNLVL 28 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~~i~ 28 (177)
.+++.+||++|.||++++..|.+.+.
T Consensus 235 ~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 235 PRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988653
No 255
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=75.88 E-value=2.7 Score=33.07 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=22.0
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
.+++.|||++|.|+++++..|.+.+
T Consensus 253 ~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 253 PKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999998764
No 256
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=75.83 E-value=1.2 Score=38.02 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=22.4
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416 4 QLFETSAKDNINVEEMFMAITNLVL 28 (177)
Q Consensus 4 ~f~EtSAk~~~nV~~~F~~l~~~i~ 28 (177)
.++++||++|.||+++|..|++.+.
T Consensus 159 ~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 159 EAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp GCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred cEEEEEeecCCCchHHHHHHHHhcc
Confidence 3899999999999999999998764
No 257
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=74.90 E-value=1.5 Score=37.39 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=22.4
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416 4 QLFETSAKDNINVEEMFMAITNLVL 28 (177)
Q Consensus 4 ~f~EtSAk~~~nV~~~F~~l~~~i~ 28 (177)
.++++||++|.||+++|..|++.+.
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred eEEEeecccCCCchhHHHHHhhcCC
Confidence 3899999999999999999988764
No 258
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=74.69 E-value=2.2 Score=36.34 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=22.9
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITNLVL 28 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~~i~ 28 (177)
++++.+||++|.||++++..|...+.
T Consensus 192 vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 192 VSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ceEEEEeccCCCCchhHHHHHHhhcc
Confidence 47999999999999999999987654
No 259
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=73.03 E-value=2.5 Score=32.47 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=21.2
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 4 QLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 4 ~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
.++++||++|.||+++|..|++.+
T Consensus 150 ~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 150 DIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp EEEECCTTTTTTHHHHHHHHHTTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHhC
Confidence 589999999999999999888743
No 260
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=69.32 E-value=1.9 Score=36.18 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.6
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
+|+|.+||++|.||+++|..+++.+
T Consensus 251 ~PV~~gSA~~~~GV~~Lld~i~~~~ 275 (528)
T 3tr5_A 251 TPIFFGSAINNFGVGELLDAFVKEA 275 (528)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHS
T ss_pred eEEEeccccCCccHHHHHHHHHHhC
Confidence 4789999999999999999998865
No 261
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=69.07 E-value=4.3 Score=32.19 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.5
Q ss_pred cEEEeccCCCCCHHHHHHHHHHH
Q psy1416 4 QLFETSAKDNINVEEMFMAITNL 26 (177)
Q Consensus 4 ~f~EtSAk~~~nV~~~F~~l~~~ 26 (177)
.++++||++|.||++++..|.+.
T Consensus 137 ~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 137 DVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999988764
No 262
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=68.99 E-value=1.7 Score=38.65 Aligned_cols=43 Identities=16% Similarity=-0.084 Sum_probs=28.3
Q ss_pred cccchhhhhcccc-hhhhhhhhhccCCCCcEEEEeeCCCCcC-CCccCHHH
Q psy1416 61 CTVLNECAWLGCG-WMTICPIIYCWLFPSGLRLVGNKNDDPQ-KKVVLTED 109 (177)
Q Consensus 61 ~dit~~~Sf~~~~-w~~~~~~~~~~~~~~~~ilvgnK~Dl~~-~~~v~~~~ 109 (177)
.|.++..++.... |.... ..++|++||+||+|+.. ++.++.++
T Consensus 129 vDa~~g~~~qt~~~~~~~~------~~~~p~ilviNK~D~~~~e~~~~~~e 173 (842)
T 1n0u_A 129 VDTIEGVCVQTETVLRQAL------GERIKPVVVINKVDRALLELQVSKED 173 (842)
T ss_dssp EETTTBSCHHHHHHHHHHH------HTTCEEEEEEECHHHHHHTSCCCHHH
T ss_pred EeCCCCCCHHHHHHHHHHH------HcCCCeEEEEECCCcchhhhccCHHH
Confidence 6777777777765 64322 13689999999999863 33344443
No 263
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=68.26 E-value=0.88 Score=38.36 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=14.0
Q ss_pred CCcEEEEeeCCCCcCCC
Q psy1416 87 PSGLRLVGNKNDDPQKK 103 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~ 103 (177)
..|+++|+||+|+....
T Consensus 218 ~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 218 EDKIRVVLNKADMVETQ 234 (550)
T ss_dssp GGGEEEEEECGGGSCHH
T ss_pred CCCEEEEEECCCccCHH
Confidence 47899999999997543
No 264
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=66.90 E-value=0.54 Score=35.09 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=21.6
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHH
Q psy1416 6 FETSAKDNINVEEMFMAITNLVLR 29 (177)
Q Consensus 6 ~EtSAk~~~nV~~~F~~l~~~i~~ 29 (177)
+++||++|.||+++|..|.+.+..
T Consensus 185 ~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 185 RAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHHh
Confidence 799999999999999999987643
No 265
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=66.28 E-value=2.3 Score=34.68 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=17.0
Q ss_pred CcEEEeccCCCCCHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFM 21 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~ 21 (177)
++|+++||++|.||++.+.
T Consensus 199 ~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 199 IHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred eeEEEeeccCCcccccccc
Confidence 5799999999999999765
No 266
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=62.89 E-value=1.6 Score=35.04 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=20.7
Q ss_pred CcEEEeccCCCCC----------HHHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNIN----------VEEMFMAITNLV 27 (177)
Q Consensus 3 ~~f~EtSAk~~~n----------V~~~F~~l~~~i 27 (177)
++|+++||++|.| |+++|..|.+.+
T Consensus 159 ~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred CcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 6899999999876 888888877654
No 267
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=61.05 E-value=1.1 Score=36.46 Aligned_cols=19 Identities=11% Similarity=0.092 Sum_probs=17.1
Q ss_pred CcEEEeccCCCCCHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFM 21 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~ 21 (177)
++|+++||++|.||.++|.
T Consensus 187 ~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 187 VRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp CEEEECBTTTTBTTTBCCS
T ss_pred ceEEEeecccCcccccccc
Confidence 6799999999999998775
No 268
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=60.59 E-value=1.1 Score=33.76 Aligned_cols=26 Identities=15% Similarity=0.301 Sum_probs=11.4
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1416 1 MGIQLFETSAKDNINVEEMFMAITNL 26 (177)
Q Consensus 1 ~~~~f~EtSAk~~~nV~~~F~~l~~~ 26 (177)
++++++++||+++.++++++..|.+.
T Consensus 176 ~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 176 HKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp TTCCCCCC-----------CHHHHHT
T ss_pred cCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 36789999999999999998877663
No 269
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=59.24 E-value=1.3 Score=35.92 Aligned_cols=20 Identities=20% Similarity=0.041 Sum_probs=17.6
Q ss_pred CcEEEeccCCCCCHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMA 22 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~ 22 (177)
++|+++||++|.||+++|..
T Consensus 198 ~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 198 MAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp EEEEECCTTTCTTTSSCCTT
T ss_pred ceEEEEeccCCCCccccccc
Confidence 67999999999999997655
No 270
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=58.05 E-value=3.4 Score=34.03 Aligned_cols=18 Identities=17% Similarity=0.110 Sum_probs=15.6
Q ss_pred CCcEEEeccCCCCCHHHH
Q psy1416 2 GIQLFETSAKDNINVEEM 19 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~ 19 (177)
+++|+++||++|.||++.
T Consensus 211 ~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 211 NINWVPISGFSGEGVYKI 228 (483)
T ss_dssp GEEEEECCSSSCTTSSSS
T ss_pred cceEEEEeeecCCCcccc
Confidence 367999999999999864
No 271
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=54.27 E-value=8.2 Score=29.33 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=23.2
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMFMAITNLVL 28 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F~~l~~~i~ 28 (177)
|++++.+||+++.++++++..+.+.+.
T Consensus 79 g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 79 GIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp TCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred CCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 567899999999999999988877654
No 272
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=53.26 E-value=25 Score=30.42 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=19.6
Q ss_pred cEEEecCCCCCCHHHHHHHHHHHHH
Q psy1416 120 QLFETSAKDNINVEEMFMAITNLVL 144 (177)
Q Consensus 120 ~~~e~Sak~~~~v~~~f~~~~~~~~ 144 (177)
+.+..||+.+.+|..++..+++.+.
T Consensus 266 pv~~gsa~~~~gv~~lLd~i~~~lP 290 (709)
T 4fn5_A 266 PAVCGSSFKNKGVPLVLDAVIDYLP 290 (709)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHSC
T ss_pred eeeeeecccCCchHHHHHHHHhhCC
Confidence 5678899999999988777766553
No 273
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=50.50 E-value=14 Score=28.78 Aligned_cols=25 Identities=8% Similarity=0.128 Sum_probs=21.3
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
.+.+.|||+++.|+++++..|.+..
T Consensus 235 ~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 235 PPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999888753
No 274
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=49.74 E-value=3.6 Score=34.93 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=14.2
Q ss_pred CcEEEeccCCCCCHHH
Q psy1416 3 IQLFETSAKDNINVEE 18 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~ 18 (177)
++|+++||++|.||++
T Consensus 357 ~~ii~iSA~~G~gI~e 372 (592)
T 3mca_A 357 VHFVPISAISGTNLIQ 372 (592)
T ss_dssp EEEEEECSSSCSSSCS
T ss_pred eEEEEEecccCccccc
Confidence 4799999999999983
No 275
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=48.51 E-value=2.1 Score=35.19 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=16.5
Q ss_pred CcEEEeccCCCCCHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMF 20 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F 20 (177)
++|+++||++|.||+++|
T Consensus 226 ~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 226 VKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp EEEEECBTTTTBTTSSCC
T ss_pred ceEEeccccccccccccc
Confidence 569999999999999887
No 276
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=46.98 E-value=31 Score=27.47 Aligned_cols=49 Identities=16% Similarity=0.057 Sum_probs=33.1
Q ss_pred CCcEEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNL 142 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~~~~~ 142 (177)
..|.++|.||+|.. ..++...+.+ ...++.+|+..+.|++.+...+.+.
T Consensus 249 ~~p~i~v~nKid~~-----~~eele~l~~--~~~~~~is~~~e~gLd~Li~~~y~~ 297 (376)
T 4a9a_A 249 YMPAIYVLNKIDSL-----SIEELELLYR--IPNAVPISSGQDWNLDELLQVMWDR 297 (376)
T ss_dssp EECEEEEEECGGGS-----CHHHHHHHTT--STTEEECCTTTCTTHHHHHHHHHHH
T ss_pred ccceEEEEeccccc-----CHHHHHHHhc--ccchhhhhhhhcccchhHHHHHHHH
Confidence 46899999999964 2344333322 1358899999999998766554443
No 277
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=46.97 E-value=22 Score=28.67 Aligned_cols=60 Identities=12% Similarity=0.063 Sum_probs=37.4
Q ss_pred CCcEEEEeeCCCCc-------CCCccCHHHH----HHHH----HHcC---CcEEEecC--CCCCCHHHHHHHHHHHHHHH
Q psy1416 87 PSGLRLVGNKNDDP-------QKKVVLTEDA----QRFA----NQMG---IQLFETSA--KDNINVEEMFMAITNLVLRS 146 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~-------~~~~v~~~~~----~~~a----~~~~---~~~~e~Sa--k~~~~v~~~f~~~~~~~~~~ 146 (177)
+.|+++|.||.|+. .-......+. ..+. .+.+ ...+-+|+ +.+.+++++-..+.+.+.+.
T Consensus 175 ~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 175 KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 57899999999863 1111222222 2332 1222 35688899 77778999988888776543
No 278
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=45.71 E-value=3.4 Score=33.10 Aligned_cols=14 Identities=14% Similarity=0.131 Sum_probs=12.5
Q ss_pred CcEEEeccCCCCCH
Q psy1416 3 IQLFETSAKDNINV 16 (177)
Q Consensus 3 ~~f~EtSAk~~~nV 16 (177)
++|+++||++|.||
T Consensus 168 ~~~i~~SA~~g~~v 181 (405)
T 2c78_A 168 VPVIRGSALLALEQ 181 (405)
T ss_dssp SCEEECCHHHHHHH
T ss_pred CCEEEccHHHhhhh
Confidence 68999999999983
No 279
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=43.92 E-value=28 Score=27.91 Aligned_cols=42 Identities=10% Similarity=0.037 Sum_probs=29.8
Q ss_pred CCcEEEEeeCCCCcC--CCccCHHHHHHHHHHcC--CcEEEecCCC
Q psy1416 87 PSGLRLVGNKNDDPQ--KKVVLTEDAQRFANQMG--IQLFETSAKD 128 (177)
Q Consensus 87 ~~~~ilvgnK~Dl~~--~~~v~~~~~~~~a~~~~--~~~~e~Sak~ 128 (177)
.-|++.+.|+.|-.- ...-..+...+++...+ ..++.+||+.
T Consensus 224 ~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~ 269 (392)
T 1ni3_A 224 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAF 269 (392)
T ss_dssp GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred cCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHH
Confidence 458999999998321 11223566778888776 7899999974
No 280
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=40.36 E-value=5.9 Score=32.39 Aligned_cols=18 Identities=17% Similarity=0.101 Sum_probs=15.7
Q ss_pred CcEEEeccCCCCCHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMF 20 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F 20 (177)
++|+++||++|.||++..
T Consensus 186 ~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 186 VPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp CCEEECCTTTCBTTTBCC
T ss_pred ceEEEeecccCcCccccc
Confidence 689999999999998653
No 281
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=39.61 E-value=5.7 Score=33.09 Aligned_cols=51 Identities=14% Similarity=0.054 Sum_probs=33.1
Q ss_pred CcE-EEEeeCCCCcCCCccCHHHHHHHHHHcCCcE------------------EEecCCCCCC-HHHHHHHHHHH
Q psy1416 88 SGL-RLVGNKNDDPQKKVVLTEDAQRFANQMGIQL------------------FETSAKDNIN-VEEMFMAITNL 142 (177)
Q Consensus 88 ~~~-ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~------------------~e~Sak~~~~-v~~~f~~~~~~ 142 (177)
+|+ ++|.||+|...... .+.......+.+. +.+||+.|.+ |++++..+.+.
T Consensus 240 ~~i~gvVlNK~D~~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 240 VDVASVIVTKLDGHAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp HCCCCEEEECTTSCCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cCceEEEEeCCccccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 565 89999999864321 1223334444432 3479999999 98888887754
No 282
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=38.51 E-value=10 Score=35.18 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=20.7
Q ss_pred CcEEEeccCCC--------CCHHHHHHHHHHHH
Q psy1416 3 IQLFETSAKDN--------INVEEMFMAITNLV 27 (177)
Q Consensus 3 ~~f~EtSAk~~--------~nV~~~F~~l~~~i 27 (177)
++|+++||++| .||+++|..|.+.+
T Consensus 452 vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 452 TPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp CCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred eeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 68999999999 45888888887754
No 283
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=38.46 E-value=6.9 Score=33.35 Aligned_cols=19 Identities=16% Similarity=0.036 Sum_probs=16.4
Q ss_pred CCcEEEeccCCCCCHHHHH
Q psy1416 2 GIQLFETSAKDNINVEEMF 20 (177)
Q Consensus 2 ~~~f~EtSAk~~~nV~~~F 20 (177)
+++|+++||++|.||+++.
T Consensus 345 ~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 345 NINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp GCEEEECCTTTCTTTSSCT
T ss_pred CccEEeeecccCCCccccC
Confidence 3689999999999999763
No 284
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=33.92 E-value=23 Score=30.65 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=23.6
Q ss_pred CcEEEeccC--------------CCCCHHHHHHHHHHHHHH
Q psy1416 3 IQLFETSAK--------------DNINVEEMFMAITNLVLR 29 (177)
Q Consensus 3 ~~f~EtSAk--------------~~~nV~~~F~~l~~~i~~ 29 (177)
.+++++||+ ++.||++.|..|.+.+..
T Consensus 285 ~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 285 ERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp GTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 368999999 999999999999987753
No 285
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=25.94 E-value=49 Score=21.46 Aligned_cols=22 Identities=18% Similarity=0.016 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHcCCcEEEecCC
Q psy1416 106 LTEDAQRFANQMGIQLFETSAK 127 (177)
Q Consensus 106 ~~~~~~~~a~~~~~~~~e~Sak 127 (177)
+.++|..||+++|+.|.-.-.+
T Consensus 68 skE~AiayAek~G~~y~V~ep~ 89 (108)
T 2lju_A 68 TRELAIAYAVAHKIDYTVLQDN 89 (108)
T ss_dssp SHHHHHHHHHHTTCEEEEECSS
T ss_pred CHHHHHHHHHHcCCEEEEecCC
Confidence 6799999999999998765443
No 286
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=24.89 E-value=50 Score=21.33 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHcCCcEEEecCCC
Q psy1416 106 LTEDAQRFANQMGIQLFETSAKD 128 (177)
Q Consensus 106 ~~~~~~~~a~~~~~~~~e~Sak~ 128 (177)
+.|+|..||+++|+.|.-.-.+.
T Consensus 60 skE~AiayAek~G~~y~V~ep~~ 82 (106)
T 2jya_A 60 TQEQAEAYAQRKGIEYRVILPKE 82 (106)
T ss_dssp SHHHHHHHHHHHTCEEEECCCTT
T ss_pred CHHHHHHHHHHcCCEEEEeCCCc
Confidence 67999999999999987655543
No 287
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=21.44 E-value=68 Score=19.45 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=29.3
Q ss_pred EEEEeeCCCCcCCCccCHHHHHHHHHHcCCcEEEecCCCCCCH
Q psy1416 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINV 132 (177)
Q Consensus 90 ~ilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~~~~v 132 (177)
+-|||-.-. .-..++..+|...|++.+...+++|....--|
T Consensus 16 Vrli~~~Ge--~lGv~~~~eAl~~A~e~~LDLVevsp~a~PPV 56 (78)
T 1tif_A 16 VRLIDQNGD--QLGIKSKQEALEIAARRNLDLVLVAPNAKPPV 56 (78)
T ss_dssp EEEECTTSC--EEEEEEHHHHHHHHHHTTCEEEEEETTSSSCE
T ss_pred EEEECCCCc--CCCcccHHHHHHHHHHcCCCEEEECCCCCCCE
Confidence 455553222 12468899999999999999999998654333
No 288
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=20.27 E-value=54 Score=27.26 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.7
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHH
Q psy1416 3 IQLFETSAKDNINVEEMFMAITNLV 27 (177)
Q Consensus 3 ~~f~EtSAk~~~nV~~~F~~l~~~i 27 (177)
+|.|-.||++|.+|+..+..|++.+
T Consensus 252 ~Pv~~gSA~~~~Gv~~LLd~i~~~~ 276 (529)
T 2h5e_A 252 TPVFFGTALGNFGVDHMLDGLVEWA 276 (529)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHS
T ss_pred eEEEeeecccCCCHHHHHHHHHHhC
Confidence 4688999999999999988888865
Done!