RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1416
(177 letters)
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 95.8 bits (239), Expect = 2e-25
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR--SKKE 149
LVGNK D K+VV + A+ FA+ + ETSA D+ NVE+ F+ + + S++
Sbjct: 118 LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQN 177
Query: 150 QKERQVLNSDTVNIRKHTTKPGGKKKCC 177
E D N+ CC
Sbjct: 178 LNETTQKKEDKGNVNLKGQSLTNTGGCC 205
Score = 54.6 bits (132), Expect = 9e-10
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLR--SKKEQKERQVLNSDTVNIRKHTTKPGGKK 58
+ ETSA D+ NVE+ F+ + + S++ E D N+
Sbjct: 143 NKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKGQSLTNTG 202
Query: 59 KVC 61
C
Sbjct: 203 GCC 205
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 87.8 bits (218), Expect = 4e-22
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK D K+ V E+ +R A ++ + ETSAK NV+++F + L + +
Sbjct: 126 LVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA-ALPGMESTQ 184
Query: 152 ERQVLNSDTVNIRKHTTKPGGKKKCC 177
+R + + + K +P + C
Sbjct: 185 DRSREDMIDIKLEKPQEQPVSEGGCL 210
Score = 48.1 bits (115), Expect = 2e-07
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKV 60
+ + ETSAK NV+++F + + + + D ++I+ + +
Sbjct: 151 LNVMFIETSAKAGYNVKQLFRRVAAAL---PGMESTQDRSREDMIDIKLEKPQEQPVSEG 207
Query: 61 C 61
Sbjct: 208 G 208
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 87.3 bits (217), Expect = 4e-22
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
++GNK D ++V ++ I FETSAK+ INVE+ F I L+ ++ +
Sbjct: 122 VLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK-QETEV 180
Query: 152 ERQVLNSDTVNIRKHTTKPGGKKKCC 177
E + + + K+ + C
Sbjct: 181 ELYNEFPEPIKLDKNERAKASAESCS 206
Score = 51.9 bits (125), Expect = 7e-09
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKV 60
I FETSAK+ INVE+ F I L+ ++ + E + + + K + +
Sbjct: 147 NNIPYFETSAKEAINVEQAFQTIARNALK-QETEVELYNEFPEPIKLDK-NERAKASAES 204
Query: 61 C 61
C
Sbjct: 205 C 205
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 86.1 bits (214), Expect = 8e-22
Identities = 46/63 (73%), Positives = 54/63 (85%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNKNDDP++KVV TEDA +FA QMGIQLFETSAK+N+NVEEMF IT LVLR+KK+
Sbjct: 118 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNL 177
Query: 152 ERQ 154
+Q
Sbjct: 178 AKQ 180
Score = 50.2 bits (121), Expect = 2e-08
Identities = 27/38 (71%), Positives = 32/38 (84%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQ 38
MGIQLFETSAK+N+NVEEMF IT LVLR+KK+ +Q
Sbjct: 143 MGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 180
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 86.1 bits (214), Expect = 1e-21
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK+D K+ V E+A+ A Q + ETSAK NV+++F + + K E
Sbjct: 124 LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 183
Query: 152 ERQVLNSDTVNIRKHTTKPGGKKKCC 177
+ + ++ + +++CC
Sbjct: 184 KEK-----NGKKKRKSLAKRIRERCC 204
Score = 49.5 bits (119), Expect = 5e-08
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKV 60
+ ETSAK NV+++F + + K E + + +K + ++
Sbjct: 149 WNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSK------EKNGKKKRKSLAKRIRER 202
Query: 61 CTVL 64
C +L
Sbjct: 203 CCIL 206
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 85.5 bits (212), Expect = 3e-21
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
L+GNK D P ++ V A+ A++ GI FETSA NVE+ + +L+++ + EQ
Sbjct: 146 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK-RMEQC 204
Query: 152 ERQVLNSDTVN 162
+ DTVN
Sbjct: 205 VEKTQIPDTVN 215
Score = 50.4 bits (121), Expect = 3e-08
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVN 46
GI FETSA NVE+ + +L+++ + EQ + DTVN
Sbjct: 171 YGIPYFETSAATGQNVEKAVETLLDLIMK-RMEQCVEKTQIPDTVN 215
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 84.7 bits (210), Expect = 5e-21
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK+D + +VV + + A ++GI E+SAK++ NV E+F + L+ K
Sbjct: 130 LVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNK 188
Query: 152 ERQVLNSDTVNIRKHTTKPGGKKK 175
V N NI ++ K
Sbjct: 189 LVGVGNGKEGNISINSGSGNSSKS 212
Score = 54.3 bits (131), Expect = 1e-09
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKK 59
+GI E+SAK++ NV E+F + L+ K V N NI ++ K
Sbjct: 154 LGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGNGKEGNISINSGSGNSSKS 212
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 83.4 bits (207), Expect = 9e-21
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK D KKVV A+ FA+ +GI ETSAK+ NVE+ FM + + K+
Sbjct: 126 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK--KRMGP 183
Query: 152 ERQVLNSDTVNIR 164
++ N++
Sbjct: 184 GATAGGAEKSNVK 196
Score = 47.2 bits (113), Expect = 3e-07
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIR 48
+GI ETSAK+ NVE+ FM + + K+ ++ N++
Sbjct: 151 LGIPFLETSAKNATNVEQSFMTMAAEIK--KRMGPGATAGGAEKSNVK 196
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 83.0 bits (206), Expect = 1e-20
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 150
L+GNK D ++VV ED ++ A + G+ ETSAK +NV+ F AI + R +
Sbjct: 121 LLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKA 179
Score = 46.8 bits (112), Expect = 4e-07
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 34
G+ ETSAK +NV+ F AI + R +
Sbjct: 146 YGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKA 179
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 83.0 bits (206), Expect = 1e-20
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 150
LVGNK+D Q + V TE+A+ FA G+ ETSA D+ NVE F + + +Q
Sbjct: 135 LVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193
Score = 47.6 bits (114), Expect = 2e-07
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 34
G+ ETSA D+ NVE F + + +Q
Sbjct: 160 NGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 83.1 bits (206), Expect = 2e-20
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
L GNK+D ++ V E+A+ A + GI FETSA + N+ + +L+++ +
Sbjct: 132 LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMERSV 191
Query: 152 ERQ 154
++
Sbjct: 192 DKS 194
Score = 47.6 bits (114), Expect = 2e-07
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQ 38
GI FETSA + N+ + +L+++ + ++
Sbjct: 157 YGIPYFETSAANGTNISHAIEMLLDLIMKRMERSVDKS 194
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 83.1 bits (206), Expect = 2e-20
Identities = 24/84 (28%), Positives = 39/84 (46%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK D ++VV +E ++ A+ +G + FE SAKDNINV++ F + +++ E
Sbjct: 118 LVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESL 177
Query: 152 ERQVLNSDTVNIRKHTTKPGGKKK 175
+ T
Sbjct: 178 DTADPAVTGAKQGPQLTDQQAPPH 201
Score = 47.6 bits (114), Expect = 3e-07
Identities = 14/59 (23%), Positives = 23/59 (38%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKK 59
+G + FE SAKDNINV++ F + +++ E + T
Sbjct: 143 LGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLTDQQAPPH 201
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 82.6 bits (205), Expect = 2e-20
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
++GNK D K+ V E ++ A GI+ ETSAK NINVE F + + +
Sbjct: 118 ILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNW 177
Query: 152 E 152
+
Sbjct: 178 K 178
Score = 46.8 bits (112), Expect = 4e-07
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKE 36
GI+ ETSAK NINVE F + + + +
Sbjct: 143 YGIKFMETSAKANINVENAFFTLARDIKAKMDKNWK 178
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 83.1 bits (206), Expect = 2e-20
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK D +++ V + A+ F+ + ETSAK++ NVE++F+ + ++ ++
Sbjct: 136 LVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNT 195
Score = 46.9 bits (112), Expect = 5e-07
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 35
+ ETSAK++ NVE++F+ + ++ ++
Sbjct: 161 QDMYYLETSAKESDNVEKLFLDLACRLISEARQNT 195
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 82.3 bits (204), Expect = 3e-20
Identities = 24/58 (41%), Positives = 38/58 (65%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 149
LVGNK D ++VV ED +R A+ +G + FE SAK+NINV+++F + +++ E
Sbjct: 132 LVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189
Score = 46.8 bits (112), Expect = 4e-07
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 33
+G + FE SAK+NINV+++F + +++ E
Sbjct: 157 LGFEFFEASAKENINVKQVFERLVDVICEKMNE 189
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 81.9 bits (203), Expect = 4e-20
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 149
LVGNK D +++VV TE Q A Q+G FE SAK+NI+V + F + + + +
Sbjct: 133 LVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD 190
Score = 46.1 bits (110), Expect = 7e-07
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 33
+G FE SAK+NI+V + F + + + +
Sbjct: 158 LGFDFFEASAKENISVRQAFERLVDAICDKMSD 190
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 81.5 bits (202), Expect = 4e-20
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS 146
L+GNK D ++ V E+A++FA + G+ E SAK NVE+ F+ + ++
Sbjct: 125 LIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 179
Score = 46.4 bits (111), Expect = 5e-07
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRS 30
G+ E SAK NVE+ F+ + ++
Sbjct: 150 NGLLFLEASAKTGENVEDAFLEAAKKIYQN 179
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 81.4 bits (202), Expect = 4e-20
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
LV NK D + E+A+ A ++ ++ + TS K+++NV E+F + L+
Sbjct: 114 LVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167
Score = 45.9 bits (110), Expect = 6e-07
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLR 29
+ ++ + TS K+++NV E+F + L+
Sbjct: 139 LKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 81.9 bits (203), Expect = 4e-20
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR--SKKE 149
LVGNK+D + V T++A+ FA + + ETSA D+ NVEE F I + R S+K+
Sbjct: 115 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 174
Query: 150 QKERQVLNSDTVNIRKHTTKP 170
+R + N + P
Sbjct: 175 IADRAAHDESPGNNVVDISVP 195
Score = 46.9 bits (112), Expect = 5e-07
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLR--SKKEQKERQVLNSDTVNIRKHTTKP 54
+ ETSA D+ NVEE F I + R S+K+ +R + N + P
Sbjct: 140 NNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVP 195
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 81.5 bits (202), Expect = 6e-20
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
LVGNK D KKVV A+ FA+ +GI ETSAK+ NVE+ FM + + +
Sbjct: 143 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196
Score = 45.7 bits (109), Expect = 1e-06
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLR 29
+GI ETSAK+ NVE+ FM + + +
Sbjct: 168 LGIPFLETSAKNATNVEQSFMTMAAEIKK 196
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 81.1 bits (201), Expect = 7e-20
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 149
L+GNK+D ++ V E+ + FA + G+ ETSAK NVEE F+ + R ++
Sbjct: 131 LIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188
Score = 45.7 bits (109), Expect = 1e-06
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 33
G+ ETSAK NVEE F+ + R ++
Sbjct: 156 HGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 81.1 bits (201), Expect = 7e-20
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
L GNK D + V +A RFA + + ETSA NVEE F+ +L K E
Sbjct: 120 LCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN-KIESG 178
Query: 152 E 152
E
Sbjct: 179 E 179
Score = 45.6 bits (109), Expect = 1e-06
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKE 36
+ ETSA NVEE F+ +L K E E
Sbjct: 145 NELMFLETSALTGENVEEAFVQCARKILN-KIESGE 179
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 80.6 bits (200), Expect = 8e-20
Identities = 17/55 (30%), Positives = 35/55 (63%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS 146
+VGNK D +++ V ++A+ +A +G + + TSAK N +EE+F+ + ++ +
Sbjct: 116 IVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 170
Score = 45.6 bits (109), Expect = 9e-07
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRS 30
+G + + TSAK N +EE+F+ + ++ +
Sbjct: 141 VGAKHYHTSAKQNKGIEELFLDLCKRMIET 170
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 80.8 bits (200), Expect = 1e-19
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
L GNK D ++ V +A RFA + + ETSA NVEE F+ +L K +
Sbjct: 135 LCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN-KIDSG 193
Query: 152 E 152
E
Sbjct: 194 E 194
Score = 45.7 bits (109), Expect = 1e-06
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKE 36
+ ETSA NVEE F+ +L K + E
Sbjct: 160 NELMFLETSALTGENVEEAFLKCARTILN-KIDSGE 194
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 80.3 bits (199), Expect = 1e-19
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 150
L GNK+D + V EDAQ +A + G+ ETSAK NV+E+F I + R + +
Sbjct: 122 LAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180
Score = 45.2 bits (108), Expect = 2e-06
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 34
G+ ETSAK NV+E+F I + R + +
Sbjct: 147 NGLFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 79.9 bits (198), Expect = 2e-19
Identities = 17/59 (28%), Positives = 24/59 (40%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 150
LVGNK D + + E RF + G SAK +V F + +L K +
Sbjct: 120 LVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178
Score = 44.5 bits (106), Expect = 3e-06
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 34
G SAK +V F + +L K +
Sbjct: 145 NGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 80.8 bits (200), Expect = 2e-19
Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 1/85 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI-TNLVLRSKKEQ 150
+ NK D ++ + + + FE SAK N F+ + R
Sbjct: 122 VCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIF 181
Query: 151 KERQVLNSDTVNIRKHTTKPGGKKK 175
L VN H+ +
Sbjct: 182 VSNVNLEPTEVNYDYHSPEESKYID 206
Score = 48.1 bits (115), Expect = 2e-07
Identities = 12/63 (19%), Positives = 17/63 (26%), Gaps = 1/63 (1%)
Query: 1 MGIQLFETSAKDNINVEEMFMAI-TNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKK 59
+ FE SAK N F+ + R L VN H+ +
Sbjct: 147 KNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTEVNYDYHSPEESKYID 206
Query: 60 VCT 62
Sbjct: 207 YME 209
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 79.9 bits (198), Expect = 2e-19
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK D ++ V +A F + FE SAK +NV+E F + V + ++++
Sbjct: 119 LVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQEL 178
Score = 46.4 bits (111), Expect = 5e-07
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 35
+ FE SAK +NV+E F + V + ++++
Sbjct: 144 HHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQEL 178
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 80.0 bits (198), Expect = 2e-19
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 150
+ GNK D + V +DA+ +A +G + ETSAK+ IN+EE+F I+ + +
Sbjct: 133 IAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHE 191
Score = 45.7 bits (109), Expect = 1e-06
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 34
+G + ETSAK+ IN+EE+F I+ + +
Sbjct: 158 IGAIVVETSAKNAINIEELFQGISRQIPPLDPHE 191
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 79.5 bits (197), Expect = 2e-19
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS 146
+ GNK D + V+ DA+ +A+ + ETSAK+ IN+ E+F+ I+ + +
Sbjct: 116 IAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPST 170
Score = 44.4 bits (106), Expect = 2e-06
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRS 30
+ ETSAK+ IN+ E+F+ I+ + +
Sbjct: 141 IHAIFVETSAKNAININELFIEISRRIPST 170
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 79.5 bits (197), Expect = 2e-19
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 150
LVGNK+D K+ V E+A+ A Q + ETSAK NV+++F + + K E
Sbjct: 128 LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMED 186
Score = 46.4 bits (111), Expect = 6e-07
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 34
+ ETSAK NV+++F + + K E
Sbjct: 153 WNVNYVETSAKTRANVDKVFFDLMREIRARKMED 186
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 79.6 bits (197), Expect = 3e-19
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
LVGNK+D + V T++A+ FA + G+ ETSA D+ NVE F I
Sbjct: 139 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 187
Score = 43.4 bits (103), Expect = 7e-06
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 1 MGIQLFETSAKDNINVEEMFMAIT 24
G+ ETSA D+ NVE F I
Sbjct: 164 NGLSFIETSALDSTNVEAAFQTIL 187
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 79.6 bits (197), Expect = 4e-19
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK D+ Q+ V T +AQ A + ETSAK N NV+E+F + L R
Sbjct: 119 LVGNKCDETQR-EVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLN 177
Query: 152 ERQVLNSDTVNIRKHTTKPGGKKKCC 177
+ K C
Sbjct: 178 IDG-------KRSGKQKRTDRVKGKC 196
Score = 51.5 bits (124), Expect = 1e-08
Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 7/64 (10%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKV 60
ETSAK N NV+E+F + L R + K
Sbjct: 143 WKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDG-------KRSGKQKRTDRVKGK 195
Query: 61 CTVL 64
CT++
Sbjct: 196 CTLM 199
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 79.2 bits (196), Expect = 4e-19
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLF-ETSAKDNINVEEMFMAITNLVLR 145
L+GNK+D + + V +AQ A I ETSAKD+ NVEE F+ + ++
Sbjct: 139 LIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193
Score = 43.0 bits (102), Expect = 1e-05
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 1 MGIQLF-ETSAKDNINVEEMFMAITNLVLR 29
I ETSAKD+ NVEE F+ + ++
Sbjct: 164 YDILCAIETSAKDSSNVEEAFLRVATELIM 193
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 79.2 bits (196), Expect = 4e-19
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK+D + + V E+ + A + + ETSA + N E+F + R ++ +
Sbjct: 135 LVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI-RLRRGRN 193
Query: 152 E 152
Sbjct: 194 H 194
Score = 46.1 bits (110), Expect = 7e-07
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKE 36
+ + ETSA + N E+F + R ++ +
Sbjct: 160 LSCKHIETSAALHHNTRELFEGAVRQI-RLRRGRNH 194
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 78.7 bits (195), Expect = 4e-19
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK D ++V+ E+ + A E+SAK+N ++F I +
Sbjct: 116 LVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACS 175
Query: 152 ERQ 154
+ +
Sbjct: 176 QGK 178
Score = 45.6 bits (109), Expect = 1e-06
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQ 38
E+SAK+N ++F I + + +
Sbjct: 141 WNAAFLESSAKENQTAVDVFRRIILEAEKMDGACSQGK 178
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 78.3 bits (194), Expect = 5e-19
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS 146
L GNK D K+ V ++AQ +A+ + ETSAK ++NV E+FMAI + ++
Sbjct: 116 LSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
Score = 43.7 bits (104), Expect = 4e-06
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRS 30
+ ETSAK ++NV E+FMAI + ++
Sbjct: 141 NSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 77.6 bits (192), Expect = 1e-18
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSK 147
LVGNK+D + + V E+ + A + + ETSA + N E+F + +
Sbjct: 114 LVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRR 169
Score = 44.4 bits (106), Expect = 2e-06
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSK 31
+ + ETSA + N E+F + +
Sbjct: 139 LSCKHIETSAALHHNTRELFEGAVRQIRLRR 169
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 78.6 bits (194), Expect = 1e-18
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
L+GNK+D + V TE+++ FA + + ETSA ++ NV++ F + N + + K +
Sbjct: 123 LIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQ-KVSKH 181
Query: 152 ERQVLNSDTVNIRKHTTKPGGKK 174
+ + +S + P G
Sbjct: 182 QMDLGDSSANGNANGASAPNGPT 204
Score = 43.5 bits (103), Expect = 8e-06
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKK 58
+ ETSA ++ NV++ F + N + + K + + + +S + P G
Sbjct: 148 NQLLFTETSALNSENVDKAFEELINTIYQ-KVSKHQMDLGDSSANGNANGASAPNGPT 204
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 76.9 bits (190), Expect = 3e-18
Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQM-GIQLFETSAKDNINVEEMFMAITNLVLR 145
LVGNK D + + + ++FA Q+ G++ E SAKDN NV+E+F+ + + +L+
Sbjct: 136 LVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190
Score = 45.3 bits (108), Expect = 1e-06
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 2 GIQLFETSAKDNINVEEMFMAITNLVLR 29
G++ E SAKDN NV+E+F+ + + +L+
Sbjct: 163 GMRFCEASAKDNFNVDEIFLKLVDDILK 190
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 76.5 bits (189), Expect = 4e-18
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
LVGNK D K+ V TE+ +R A ++ + ETSAK NV+++F +
Sbjct: 124 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172
Score = 41.8 bits (99), Expect = 2e-05
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 1 MGIQLFETSAKDNINVEEMFMAIT 24
+ + ETSAK NV+++F +
Sbjct: 149 LNVMFIETSAKAGYNVKQLFRRVA 172
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 75.6 bits (187), Expect = 6e-18
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
LVGNK+D K+ V E+A+ A+Q + ETSAK NV+++F + +
Sbjct: 114 LVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167
Score = 42.5 bits (101), Expect = 1e-05
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLR 29
+ ETSAK NV+++F + +
Sbjct: 139 WNVNYVETSAKTRANVDKVFFDLMREIRA 167
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 75.6 bits (187), Expect = 6e-18
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSK 147
LVGNK D+ + V + +A+ A ETSAK N NV+E+F + NL R
Sbjct: 114 LVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRT 169
Score = 43.7 bits (104), Expect = 5e-06
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSK 31
ETSAK N NV+E+F + NL R
Sbjct: 139 WKCAFMETSAKLNHNVKELFQELLNLEKRRT 169
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 76.6 bits (189), Expect = 6e-18
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 92 LVGNKND-DPQKKVVLTEDAQRFANQMGIQLFETSAK-DNINVEEMFMAITNLVLRSKKE 149
LV NK D PQ+ V + AQ +A + F+ SA + + F++I R+ ++
Sbjct: 137 LVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYED 196
Query: 150 QKE 152
+
Sbjct: 197 KVA 199
Score = 43.4 bits (103), Expect = 8e-06
Identities = 6/37 (16%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 1 MGIQLFETSAK-DNINVEEMFMAITNLVLRSKKEQKE 36
+ F+ SA + + F++I R+ +++
Sbjct: 163 NTLDFFDVSANPPGKDADAPFLSIATTFYRNYEDKVA 199
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 75.7 bits (187), Expect = 7e-18
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK D P + V T+ AQ A GI ETSAK V++ F + + + K++
Sbjct: 114 LVGNKCDLPSR-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMS 172
Query: 152 ERQVLNSDTVNIRKHTTKPGGKKKCC 177
+ K K KC
Sbjct: 173 KDG-----------KKKKKKSKTKCV 187
Score = 48.0 bits (115), Expect = 2e-07
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 12/64 (18%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKV 60
GI ETSAK V++ F + + + K++ + K K
Sbjct: 138 YGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSK------------DGKKKKKKSKTK 185
Query: 61 CTVL 64
C ++
Sbjct: 186 CVIM 189
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 75.3 bits (186), Expect = 8e-18
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 149
LVGNK+D + +VV + + A ++GI E+SAK++ NV E+F + L+
Sbjct: 113 LVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169
Score = 45.2 bits (108), Expect = 1e-06
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 33
+GI E+SAK++ NV E+F + L+
Sbjct: 137 LGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 75.7 bits (187), Expect = 8e-18
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 92 LVGNKND-DPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVLRSKK 148
++GNK D + KK+V + AQ A +G I LF TSAK+ INV+ F I L+ +
Sbjct: 123 ILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQ 181
Score = 45.6 bits (109), Expect = 1e-06
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 3 IQLFETSAKDNINVEEMFMAITNLVLRSKK 32
I LF TSAK+ INV+ F I L+ +
Sbjct: 152 IPLFLTSAKNAINVDTAFEEIARSALQQNQ 181
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 75.8 bits (187), Expect = 9e-18
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 92 LVGNKND------DPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
LVGNK D +K V ++ A G ETSAKD N+ E + + V +
Sbjct: 138 LVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197
Score = 45.3 bits (108), Expect = 2e-06
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLR 29
G ETSAKD N+ E + + V +
Sbjct: 169 YGALFCETSAKDGSNIVEAVLHLAREVKK 197
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 74.4 bits (184), Expect = 2e-17
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS 146
LVGNK D ++ V + + + A + G ETSAK V+E+F I + +
Sbjct: 113 LVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNYA 167
Score = 41.7 bits (99), Expect = 2e-05
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRS 30
G ETSAK V+E+F I + +
Sbjct: 138 WGCPFMETSAKSKTMVDELFAEIVRQMNYA 167
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 74.9 bits (185), Expect = 2e-17
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 150
LVGNK D P + V T+ A A GI ETSAK VE+ F + + + + ++
Sbjct: 131 LVGNKCDLPTR-TVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 188
Score = 46.4 bits (111), Expect = 6e-07
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 34
GI ETSAK VE+ F + + + + ++
Sbjct: 155 YGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 188
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 75.0 bits (185), Expect = 2e-17
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK D + V + +FA + + E SAK V+ F + ++++ +
Sbjct: 126 LVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWE 184
Query: 152 ERQ 154
Sbjct: 185 SEN 187
Score = 45.3 bits (108), Expect = 2e-06
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQ 38
+ E SAK V+ F + ++++ +
Sbjct: 150 HSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN 187
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 74.6 bits (184), Expect = 2e-17
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAK---DNINVEEMFMAIT 140
LVGNK D V T+ AQ+FA+ + LFETSAK DN +VE +FM +
Sbjct: 132 LVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 183
Score = 39.1 bits (92), Expect = 2e-04
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 1 MGIQLFETSAK---DNINVEEMFMAIT 24
+ LFETSAK DN +VE +FM +
Sbjct: 157 HSMPLFETSAKNPNDNDHVEAIFMTLA 183
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 74.6 bits (184), Expect = 3e-17
Identities = 15/63 (23%), Positives = 30/63 (47%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK D ++ V + ++ A G E+SA++N + +F + + R +
Sbjct: 134 LVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENSYG 193
Query: 152 ERQ 154
+ +
Sbjct: 194 QER 196
Score = 44.5 bits (106), Expect = 3e-06
Identities = 7/38 (18%), Positives = 17/38 (44%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQ 38
G E+SA++N + +F + + R + + +
Sbjct: 159 WGATFMESSARENQLTQGIFTKVIQEIARVENSYGQER 196
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 73.3 bits (181), Expect = 4e-17
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 150
LVGNK D + + V E+ + A + ETSA NV E+F + + +++
Sbjct: 116 LVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRDS 174
Score = 43.3 bits (103), Expect = 7e-06
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 34
+ ETSA NV E+F + + +++
Sbjct: 141 FDCKFIETSATLQHNVAELFEGVVRQLRLRRRDS 174
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 72.9 bits (180), Expect = 5e-17
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSK 147
LVGNK+D + + V ++ + A + ETSA + NV+ +F + + +
Sbjct: 111 LVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRR 166
Score = 42.1 bits (100), Expect = 2e-05
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSK 31
+ ETSA + NV+ +F + + +
Sbjct: 136 FDCKFIETSAALHHNVQALFEGVVRQIRLRR 166
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 73.0 bits (180), Expect = 8e-17
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 92 LVGNKND--DPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVLRSKK 148
LVG ++ +V+ A++ + + +ET A +NVE +F + V+ +K
Sbjct: 124 LVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRK 183
Query: 149 E 149
+
Sbjct: 184 K 184
Score = 46.0 bits (110), Expect = 7e-07
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 2 GIQLFETSAKDNINVEEMFMAITNLVLRSKKE 33
+ET A +NVE +F + V+ +K+
Sbjct: 153 RCTYYETCATYGLNVERVFQDVAQKVVALRKK 184
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 73.5 bits (181), Expect = 1e-16
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAI-TNLVLRSKKEQ 150
L GNK D +KV + F + +Q ++ SAK N N E+ F+ + L+ E
Sbjct: 124 LCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF 181
Query: 151 KERQVLNSDTVNI 163
L V +
Sbjct: 182 VAMPALAPPEVVM 194
Score = 46.5 bits (111), Expect = 7e-07
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 1 MGIQLFETSAKDNINVEEMFMAI-TNLVLRSKKEQKERQVLNSDTVNI 47
+Q ++ SAK N N E+ F+ + L+ E L V +
Sbjct: 147 KNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 194
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 72.7 bits (179), Expect = 2e-16
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK+D + + V + + A + ETSA NV+E+F I V R +++ K
Sbjct: 150 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV-RLRRDSK 208
Query: 152 ER 153
E+
Sbjct: 209 EK 210
Score = 43.1 bits (102), Expect = 1e-05
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 2 GIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKER 37
+ ETSA NV+E+F I V R +++ KE+
Sbjct: 176 DCKFIETSAAVQHNVKELFEGIVRQV-RLRRDSKEK 210
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 70.2 bits (173), Expect = 6e-16
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
LVGNK+D + V + AQ A GI ETSAK VE+ F + + +
Sbjct: 113 LVGNKSDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
Score = 41.7 bits (99), Expect = 2e-05
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLR 29
GI ETSAK VE+ F + + +
Sbjct: 137 YGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 70.3 bits (173), Expect = 7e-16
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDN-INVEEMFMAITNLVLR 145
LV NK D + V + + A + I ETSAKD +NV++ F + ++ +
Sbjct: 128 LVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182
Score = 37.9 bits (89), Expect = 6e-04
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 1 MGIQLFETSAKDN-INVEEMFMAITNLVLR 29
I ETSAKD +NV++ F + ++ +
Sbjct: 153 YNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 70.2 bits (173), Expect = 7e-16
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVLRSK 147
++GNK D +++V TE+AQ + G FETSAKD NV F VL ++
Sbjct: 121 ILGNKIDISERQVS-TEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176
Score = 44.0 bits (105), Expect = 4e-06
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 2 GIQLFETSAKDNINVEEMFMAITNLVLRSK 31
FETSAKD NV F VL ++
Sbjct: 147 DYPYFETSAKDATNVAAAFEEAVRRVLATE 176
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 70.3 bits (173), Expect = 1e-15
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDN-INVEEMFMAITNLVLRSKKEQ 150
LVGNK D + V TE+ ++ A ++ +E SA N+ E+F + V R + Q
Sbjct: 137 LVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196
Score = 39.1 bits (92), Expect = 2e-04
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 1 MGIQLFETSAKDN-INVEEMFMAITNLVLRSKKEQ 34
+ +E SA N+ E+F + V R + Q
Sbjct: 162 LACAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 69.4 bits (171), Expect = 1e-15
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQ-MGIQLFETSAKDNINVEEMFMAITNLVLR 145
LVGNK D ++VV E Q A Q E+SAK INV E+F + + R
Sbjct: 113 LVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
Score = 42.1 bits (100), Expect = 1e-05
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLR 29
E+SAK INV E+F + + R
Sbjct: 139 CNCAFLESSAKSKINVNEIFYDLVRQINR 167
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 69.6 bits (170), Expect = 6e-15
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
+V K D+ ++ + + ++ +Q+ ETSA+ N+NV+ F + L+ +
Sbjct: 203 VVLTKCDEGVERYI-RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLIDK 255
Score = 46.5 bits (110), Expect = 9e-07
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLR 29
+Q+ ETSA+ N+NV+ F + L+ +
Sbjct: 227 KNLQVVETSARSNVNVDLAFSTLVQLIDK 255
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 68.7 bits (168), Expect = 6e-15
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
LV NK D K V + Q++A + +TSAK N++ +F + + +
Sbjct: 152 LVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204
Score = 40.6 bits (95), Expect = 8e-05
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 2 GIQLFETSAKDNINVEEMFMAITNLVLR 29
+ +TSAK N++ +F + + +
Sbjct: 177 NLLFIQTSAKTGTNIKNIFYMLAEEIYK 204
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 67.3 bits (164), Expect = 8e-14
Identities = 11/86 (12%), Positives = 30/86 (34%), Gaps = 2/86 (2%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
+V NK D+ + + + + S K+ VE + ++ + VL +
Sbjct: 155 VVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVL--HPDSI 212
Query: 152 ERQVLNSDTVNIRKHTTKPGGKKKCC 177
L + +++ + ++
Sbjct: 213 YGTPLAPSWIKVKEKLVEATTAQRYL 238
Score = 40.7 bits (95), Expect = 1e-04
Identities = 7/62 (11%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKV 60
+ + S K+ VE + ++ + VL + L + +++ + ++
Sbjct: 180 IENRFHRISCKNGDGVESIAKSLKSAVL--HPDSIYGTPLAPSWIKVKEKLVEATTAQRY 237
Query: 61 CT 62
Sbjct: 238 LN 239
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 64.6 bits (158), Expect = 1e-13
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK+D + + V + + A + ETSA NV+E+F I V R +++ K
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV-RLRRDSK 177
Query: 152 ERQ 154
E+
Sbjct: 178 EKN 180
Score = 40.4 bits (95), Expect = 8e-05
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQ 38
+ ETSA NV+E+F I V R +++ KE+
Sbjct: 144 FDXKFIETSAAVQHNVKELFEGIVRQV-RLRRDSKEKN 180
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 63.4 bits (155), Expect = 3e-13
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNI-NVEEMFMAITNLVLR 145
L+GNK D Q + V + A + G FE SA + +V+ +F R
Sbjct: 132 LLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186
Score = 33.7 bits (78), Expect = 0.017
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 1 MGIQLFETSAKDNI-NVEEMFMAITNLVLR 29
G FE SA + +V+ +F R
Sbjct: 157 FGCLFFEVSACLDFEHVQHVFHEAVREARR 186
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 59.6 bits (145), Expect = 7e-12
Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRF-ANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 150
++ +VV A+ A+ +ET A +NV+ +F + V+ +K+Q
Sbjct: 115 GTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQ 174
Query: 151 K 151
+
Sbjct: 175 Q 175
Score = 41.1 bits (97), Expect = 4e-05
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 2 GIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 35
+ET A +NV+ +F + V+ +K+Q+
Sbjct: 142 RCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQ 175
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 58.9 bits (143), Expect = 2e-11
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 92 LVGNKND---DPQKKVVLTEDAQRFANQMGIQL-----FETSAKDNINVEEMFMAITNLV 143
LVG D + Q+K +++ + N+ G F + +++ + ++ I N
Sbjct: 117 LVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES 176
Query: 144 LRSKKE 149
L K
Sbjct: 177 LNFKIR 182
Score = 35.4 bits (82), Expect = 0.004
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 6 FETSAKDNINVEEMFMAITNLVLRSKKE 33
F + +++ + ++ I N L K
Sbjct: 155 FVNATEESDALAKLRKTIINESLNFKIR 182
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 57.3 bits (139), Expect = 6e-11
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 92 LVGNKND--DPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVLRSKK 148
LVG K D V ++ ++G + E S+ I + E+F + + +K
Sbjct: 132 LVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKP 191
Query: 149 EQK 151
K
Sbjct: 192 VPK 194
Score = 36.2 bits (84), Expect = 0.002
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 6 FETSAKDNINVEEMFMAITNLVLRSKKEQK 35
E S+ I + E+F + + +K K
Sbjct: 165 IEASSVAKIGLNEVFEKSVDCIFSNKPVPK 194
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 53.6 bits (129), Expect = 1e-09
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 92 LVGNKND---DPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
LVGNK D + ++ V E+ ++ A + G+ FETSAK NV ++F+ I
Sbjct: 113 LVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIG 164
Score = 34.8 bits (80), Expect = 0.006
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 1 MGIQLFETSAKDNINVEEMFMAIT 24
G+ FETSAK NV ++F+ I
Sbjct: 141 KGLLFFETSAKTGENVNDVFLGIG 164
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 51.2 bits (123), Expect = 1e-08
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 21/95 (22%)
Query: 92 LVGNKND---DPQ-----KKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNL 142
LVG K D D V+ + + Q+G E S+K NV+ +F +
Sbjct: 118 LVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKV 177
Query: 143 VLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKCC 177
VL+ + ++ K + C
Sbjct: 178 VLQPPRRKE------------VPRRRKNHRRSGCS 200
Score = 31.9 bits (73), Expect = 0.076
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 13/58 (22%)
Query: 6 FETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKVCTV 63
E S+K NV+ +F +VL+ + ++ + ++ C++
Sbjct: 157 IECSSKTQQNVKAVFDTAIKVVLQPPRRKE-------------VPRRRKNHRRSGCSI 201
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 51.3 bits (123), Expect = 1e-08
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 13/73 (17%)
Query: 92 LVGNKND------------DPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMA 138
LV NK D +++ V T+D + A ++ E SAK V E+F
Sbjct: 134 LVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFET 193
Query: 139 ITNLVLRSKKEQK 151
T L+ + +
Sbjct: 194 ATRAALQKRYGSQ 206
Score = 34.3 bits (79), Expect = 0.010
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 6 FETSAKDNINVEEMFMAITNLVLRSKKEQK 35
E SAK V E+F T L+ + +
Sbjct: 177 LECSAKTKEGVREVFETATRAALQKRYGSQ 206
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 49.0 bits (117), Expect = 9e-08
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 13/71 (18%)
Query: 92 LVGNKND------------DPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMA 138
+VG K D + V Q A +G + E SA+ + NV +F
Sbjct: 143 VVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202
Query: 139 ITNLVLRSKKE 149
+ L S+
Sbjct: 203 AAEVALSSRGR 213
Score = 33.2 bits (76), Expect = 0.026
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 6 FETSAKDNINVEEMFMAITNLVLRSKKE 33
E SA+ + NV +F + L S+
Sbjct: 186 LECSARLHDNVHAVFQEAAEVALSSRGR 213
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 48.1 bits (115), Expect = 1e-07
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 11/65 (16%)
Query: 92 LVGNKND----------DPQKKVVLTEDAQRFANQMGIQLF-ETSAKDNINVEEMFMAIT 140
LVG K D P + T + +G + E S+K NV+ +F A
Sbjct: 117 LVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAI 176
Query: 141 NLVLR 145
+VL+
Sbjct: 177 RVVLQ 181
Score = 30.4 bits (69), Expect = 0.18
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 6 FETSAKDNINVEEMFMAITNLVLR 29
E S+K NV+ +F A +VL+
Sbjct: 158 IECSSKSQENVKGVFDAAIRVVLQ 181
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 47.8 bits (114), Expect = 2e-07
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 13/73 (17%)
Query: 92 LVGNKND------------DPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMA 138
LVG K D + + + A ++G ++ E SA ++ +F
Sbjct: 114 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 173
Query: 139 ITNLVLRSKKEQK 151
VL +K
Sbjct: 174 AIRAVLCPPPVKK 186
Score = 34.0 bits (78), Expect = 0.012
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 6 FETSAKDNINVEEMFMAITNLVLRSKKEQK 35
E SA ++ +F VL +K
Sbjct: 157 LECSALTQRGLKTVFDEAIRAVLCPPPVKK 186
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 47.4 bits (113), Expect = 3e-07
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 13/73 (17%)
Query: 92 LVGNKND------------DPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMA 138
LVG ++D ++K V E A+ A ++ E SA N++E+F A
Sbjct: 129 LVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDA 188
Query: 139 ITNLVLRSKKEQK 151
++ Q+
Sbjct: 189 AIVAGIQYSDTQQ 201
Score = 33.2 bits (76), Expect = 0.026
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 6 FETSAKDNINVEEMFMAITNLVLRSKKEQK 35
E SA N++E+F A ++ Q+
Sbjct: 172 IECSALTQKNLKEVFDAAIVAGIQYSDTQQ 201
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 44.7 bits (106), Expect = 2e-06
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 13/67 (19%)
Query: 92 LVGNKND------------DPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMA 138
LVGNK D +++ V +E+ + AN++ E SAK V E+F
Sbjct: 134 LVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEM 193
Query: 139 ITNLVLR 145
T L+
Sbjct: 194 ATRAGLQ 200
Score = 29.3 bits (66), Expect = 0.50
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 6 FETSAKDNINVEEMFMAITNLVLR 29
E SAK V E+F T L+
Sbjct: 177 LECSAKTKEGVREVFEMATRAGLQ 200
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 42.4 bits (100), Expect = 2e-05
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 13/66 (19%)
Query: 92 LVGNKND------------DPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMA 138
LVG K D + + + A ++G ++ E SA ++ +F
Sbjct: 139 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
Query: 139 ITNLVL 144
VL
Sbjct: 199 AIRAVL 204
Score = 27.4 bits (61), Expect = 2.3
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 6 FETSAKDNINVEEMFMAITNLVL 28
E SA ++ +F VL
Sbjct: 182 LECSALTQRGLKTVFDEAIRAVL 204
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 39.4 bits (92), Expect = 2e-04
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 13/66 (19%)
Query: 92 LVGNKND------------DPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMA 138
L+G + D D ++K + E Q+ A ++G E SA ++ +F
Sbjct: 127 LIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186
Query: 139 ITNLVL 144
+L
Sbjct: 187 AIIAIL 192
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 39.5 bits (92), Expect = 2e-04
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 14/76 (18%)
Query: 92 LVGNKND---DPQ---------KKVVLTEDAQRFANQMG-IQLFETSAKDN-INVEEMFM 137
L+G K D D + + E A Q+G E SA + ++ +F
Sbjct: 136 LIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFR 195
Query: 138 AITNLVLRSKKEQKER 153
+ L L ++
Sbjct: 196 TASMLCLNKPSPLPQK 211
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 37.7 bits (87), Expect = 0.001
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 13/66 (19%)
Query: 92 LVGNKND------------DPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMA 138
LVG K D + + + A ++G ++ E SA ++ +F
Sbjct: 264 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323
Query: 139 ITNLVL 144
VL
Sbjct: 324 AIRAVL 329
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.004
Identities = 27/168 (16%), Positives = 49/168 (29%), Gaps = 69/168 (41%)
Query: 1 MGIQLFETS--AK------DNINVEEMFMAITNLVLRSKKE-------QKERQVLNSDTV 45
MG+ L++TS A+ DN + +I ++V+ + +K ++
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR------- 1683
Query: 46 NIRKH------TTKPGGKKKVCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDD 99
IR++ T GK K + E + Y +
Sbjct: 1684 -IRENYSAMIFETIVDGKLKTEKIFKE--------INEHSTSYTF-------------RS 1721
Query: 100 PQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSK 147
+ + T+ Q A L A L+SK
Sbjct: 1722 EKGLLSATQFTQP-A------LTLME-----------KAAFE-DLKSK 1750
Score = 31.6 bits (71), Expect = 0.15
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Query: 89 GLRLVGNKNDDPQKKVVL--TEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS 146
G ++ ++P + E +R +FET + E++F I N S
Sbjct: 1658 GFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI-NEHSTS 1716
Query: 147 KKEQKERQVLNSDTVNIRKHTTKP 170
+ E+ +L++ T T+P
Sbjct: 1717 YTFRSEKGLLSA-TQF-----TQP 1734
Score = 29.6 bits (66), Expect = 0.65
Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 37/96 (38%)
Query: 84 WLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEE-----MFMA 138
LF G+R + + +D++ E M +
Sbjct: 302 VLFFIGVR------------------CYEAYPNTSLP--PSILEDSLENNEGVPSPML-S 340
Query: 139 ITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKK 174
I+NL +EQ + V + N + P GK+
Sbjct: 341 ISNL----TQEQVQDYV---NKTN----SHLPAGKQ 365
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 33.7 bits (77), Expect = 0.020
Identities = 9/64 (14%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
+V NK D ++ + + ++F + G+ + SA ++ + I + ++
Sbjct: 285 VVINKIDVADEENI--KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPLAEKVA 342
Query: 152 ERQV 155
++
Sbjct: 343 REKI 346
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 32.9 bits (76), Expect = 0.045
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 7/73 (9%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
V NK D L I SA + ++ + + +LV K +
Sbjct: 348 TVANKLDRAANADALIRAIADGTGTEVI---GISALNGDGIDTLKQHMGDLVKNLDKLHE 404
Query: 152 ERQVLNSDTVNIR 164
++ ++R
Sbjct: 405 ASVLV----TSLR 413
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 30.5 bits (69), Expect = 0.18
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
Query: 92 LVG-NKNDDPQKKVVLTED--AQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKK 148
++ NK D P L + + + E A + V E ++ LVL
Sbjct: 139 VIQVNKRDLPD---ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195
Query: 149 E 149
Sbjct: 196 G 196
Score = 27.0 bits (60), Expect = 3.1
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 3 IQLFETSAKDNINVEEMFMAITNLVLRSKKE 33
+ E A + V E ++ LVL
Sbjct: 166 FPVLEAVATEGKGVFETLKEVSRLVLARVAG 196
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 29.0 bits (65), Expect = 0.76
Identities = 9/81 (11%), Positives = 22/81 (27%), Gaps = 5/81 (6%)
Query: 92 LVGNKNDDPQKKVVLTEDAQ-----RFANQMGIQLFETSAKDNINVEEMFMAITNLVLRS 146
+ NK D + ++ + I+ S + VE+ + L+
Sbjct: 147 IGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKND 206
Query: 147 KKEQKERQVLNSDTVNIRKHT 167
+ E + +
Sbjct: 207 QAESILLDQEQLLNTKLGETK 227
Score = 26.3 bits (58), Expect = 5.5
Identities = 6/50 (12%), Positives = 14/50 (28%)
Query: 2 GIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHT 51
I+ S + VE+ + L+ + E + +
Sbjct: 178 PIKFSSFSTLTGVGVEQAKITACELLKNDQAESILLDQEQLLNTKLGETK 227
>3ftj_A MACB, macrolide export ATP-binding/permease protein MACB;
macrolide-specific pump, ABC-type transporter; 2.00A
{Actinobacillus actinomycetemcomitans}
Length = 226
Score = 28.4 bits (64), Expect = 1.2
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 110 AQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTV 161
+ I D++N ++T L L+S +K+ ++NSDT+
Sbjct: 164 LNKITGGSRIGSITVKISDDVNSTVAEKSLTEL-LKSLHGKKDFFIMNSDTI 214
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 28.1 bits (63), Expect = 1.4
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 109 DAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKER 153
D ++ ++G+ + T+AK VEE+ I +
Sbjct: 130 DIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEGKVTTNPII 174
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 28.0 bits (63), Expect = 1.4
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 109 DAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKER 153
D +GI + TS+ +EE+ I ++ +
Sbjct: 131 DRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQKNTILHRMI 175
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 25.7 bits (57), Expect = 1.5
Identities = 9/29 (31%), Positives = 9/29 (31%), Gaps = 11/29 (37%)
Query: 47 IRKHT-TKPGGKKKVCTVLNECAWLGCGW 74
T KP C W GCGW
Sbjct: 4 GSSGTGEKP----------FACTWPGCGW 22
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 27.3 bits (61), Expect = 2.4
Identities = 5/43 (11%), Positives = 17/43 (39%)
Query: 109 DAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
+ + + +G+ + TSA V+++ + + +
Sbjct: 128 NVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTTSTVGDLA 170
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 27.1 bits (61), Expect = 2.4
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 109 DAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 150
D + +G+++ SA + +EE+ AI+ V K +
Sbjct: 133 DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDKKTAE 174
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics
consortium, transferase; 2.41A {Plasmodium vivax}
Length = 458
Score = 27.4 bits (59), Expect = 2.8
Identities = 10/60 (16%), Positives = 26/60 (43%)
Query: 97 NDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVL 156
++ + + L + G L + D++ + + ITN++++ K K+ + L
Sbjct: 78 SNVFENEKTLYIYCKYVMLHYGKDLVNPNEVDSLEFQIINGGITNILIKVKDMSKQAKYL 137
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 26.9 bits (60), Expect = 3.2
Identities = 5/42 (11%), Positives = 14/42 (33%)
Query: 109 DAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 150
+ + ++G + + +E + +AI E
Sbjct: 133 EIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANENVEL 174
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 26.9 bits (60), Expect = 3.6
Identities = 6/40 (15%), Positives = 17/40 (42%)
Query: 109 DAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKK 148
D ++ + +G + A NI + + ++ + + K
Sbjct: 131 DTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHCSQKIKP 170
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 25.9 bits (58), Expect = 6.3
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 109 DAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143
D + +G+++ SA + +EE+ AI+ V
Sbjct: 129 DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 26.1 bits (58), Expect = 6.6
Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLV 143
+V NK D +K + ++ SA +++ I+ ++
Sbjct: 145 VVVNKIDVLGEKAEELKGLYESRY--EAKVLLVSALQKKGFDDIGKTISEIL 194
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 25.6 bits (57), Expect = 8.6
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 92 LVGNKND---DPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEE 134
+ K D D + + A+ + N +G ++ TS+KD ++ +
Sbjct: 122 ICITKMDLIEDQDTEDTIQAYAEDYRN-IGYDVYLTSSKDQDSLAD 166
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase
fold, transferase; 2.02A {Caenorhabditis elegans} SCOP:
d.144.1.8
Length = 429
Score = 25.7 bits (55), Expect = 9.5
Identities = 13/111 (11%), Positives = 36/111 (32%), Gaps = 12/111 (10%)
Query: 11 KDNINVEEMFMAITNLVLR-SKKEQKERQVLNSDTVNIRKHTTKPGGKKKVCTVLNECAW 69
+++ + + ++N++ E + V +R + + ++ E
Sbjct: 73 LEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVY----FNPETESHLVAESVI 128
Query: 70 LGCGWMT-ICPIIYCWLFPSGLR---LVGN--KNDDPQKKVVLTEDAQRFA 114
+ P +Y +F G + + + T+ A+R A
Sbjct: 129 FTLLSERHLGPKLYG-IFSGGRLEEYIPSRPLSCHEISLAHMSTKIAKRVA 178
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.396
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,436,477
Number of extensions: 127389
Number of successful extensions: 515
Number of sequences better than 10.0: 1
Number of HSP's gapped: 480
Number of HSP's successfully gapped: 190
Length of query: 177
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 90
Effective length of database: 4,272,666
Effective search space: 384539940
Effective search space used: 384539940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.5 bits)