RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1416
(177 letters)
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 58.7 bits (141), Expect = 8e-12
Identities = 22/93 (23%), Positives = 44/93 (47%)
Query: 60 VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI 119
+ + ++ ++L + + L+GNK D P ++ V A+ A++ GI
Sbjct: 94 MFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGI 153
Query: 120 QLFETSAKDNINVEEMFMAITNLVLRSKKEQKE 152
FETSA NVE+ + +L+++ ++ E
Sbjct: 154 PYFETSAATGQNVEKAVETLLDLIMKRMEQCVE 186
Score = 40.3 bits (93), Expect = 4e-05
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKE 36
GI FETSA NVE+ + +L+++ ++ E
Sbjct: 151 YGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCVE 186
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 55.3 bits (132), Expect = 1e-10
Identities = 25/100 (25%), Positives = 41/100 (41%)
Query: 46 NIRKHTTKPGGKKKVCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVV 105
++ + + + A + I L L+GNK D ++VV
Sbjct: 71 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVV 130
Query: 106 LTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
ED ++ A + G+ ETSAK +NV+ F AI + R
Sbjct: 131 KREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170
Score = 36.8 bits (84), Expect = 5e-04
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLR 29
G+ ETSAK +NV+ F AI + R
Sbjct: 142 YGLPFMETSAKTGLNVDLAFTAIAKELKR 170
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 54.9 bits (131), Expect = 1e-10
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
LVGNK D ++ V + + + A + G ETSAK V+E+F I
Sbjct: 113 LVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161
Score = 34.9 bits (79), Expect = 0.002
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 1 MGIQLFETSAKDNINVEEMFMAIT 24
G ETSAK V+E+F I
Sbjct: 138 WGCPFMETSAKSKTMVDELFAEIV 161
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 54.1 bits (129), Expect = 3e-10
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK+D + V T++A+ FA + + ETSA D+ NVEE F I + R +++
Sbjct: 114 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 173
Score = 39.1 bits (90), Expect = 7e-05
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 35
+ ETSA D+ NVEE F I + R +++
Sbjct: 139 NNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 173
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 52.6 bits (125), Expect = 1e-09
Identities = 19/69 (27%), Positives = 32/69 (46%)
Query: 72 CGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNIN 131
+ + + L+GNK D ++ V E+A++FA + G+ E SAK N
Sbjct: 94 HLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN 153
Query: 132 VEEMFMAIT 140
VE+ F+
Sbjct: 154 VEDAFLEAA 162
Score = 34.9 bits (79), Expect = 0.002
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 1 MGIQLFETSAKDNINVEEMFMAIT 24
G+ E SAK NVE+ F+
Sbjct: 139 NGLLFLEASAKTGENVEDAFLEAA 162
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 52.3 bits (124), Expect = 1e-09
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSK 147
LVGNK D+ + V + +A+ A ETSAK N NV+E+F + NL R
Sbjct: 113 LVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRT 168
Score = 37.7 bits (86), Expect = 2e-04
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSK 31
ETSAK N NV+E+F + NL R
Sbjct: 138 WKCAFMETSAKLNHNVKELFQELLNLEKRRT 168
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 51.8 bits (123), Expect = 2e-09
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 149
L+GNK+D ++ V E+ + FA + G+ ETSAK NVEE F+ + R ++
Sbjct: 113 LIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 170
Score = 37.9 bits (87), Expect = 2e-04
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 33
G+ ETSAK NVEE F+ + R ++
Sbjct: 138 HGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 170
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 50.1 bits (118), Expect = 8e-09
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 149
LVGNK D ++ V +A F + FE SAK +NV+E F + V + +++
Sbjct: 116 LVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQ 173
Score = 40.8 bits (94), Expect = 2e-05
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 33
+ FE SAK +NV+E F + V + +++
Sbjct: 141 HHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQ 173
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 50.0 bits (118), Expect = 9e-09
Identities = 18/95 (18%), Positives = 38/95 (40%)
Query: 46 NIRKHTTKPGGKKKVCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVV 105
+ + + + + + + + + GNK D + V
Sbjct: 68 ALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREV 127
Query: 106 LTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
+ DA+ +A+ + ETSAK+ IN+ E+F+ I+
Sbjct: 128 MERDAKDYADSIHAIFVETSAKNAININELFIEIS 162
Score = 34.6 bits (78), Expect = 0.003
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 1 MGIQLFETSAKDNINVEEMFMAIT 24
+ ETSAK+ IN+ E+F+ I+
Sbjct: 139 IHAIFVETSAKNAININELFIEIS 162
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 50.1 bits (118), Expect = 1e-08
Identities = 15/84 (17%), Positives = 34/84 (40%)
Query: 67 CAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSA 126
++ + + + LVGNK+D + + V ++ + A + ETSA
Sbjct: 85 GSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSA 144
Query: 127 KDNINVEEMFMAITNLVLRSKKEQ 150
+ NV+ +F + + + +
Sbjct: 145 ALHHNVQALFEGVVRQIRLRRDSK 168
Score = 36.3 bits (82), Expect = 6e-04
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQ 34
+ ETSA + NV+ +F + + + +
Sbjct: 135 FDCKFIETSAALHHNVQALFEGVVRQIRLRRDSK 168
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 49.8 bits (118), Expect = 1e-08
Identities = 23/80 (28%), Positives = 32/80 (40%)
Query: 70 LGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDN 129
I I ++GNK D K+ V E ++ A GI+ ETSAK N
Sbjct: 94 FDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKAN 153
Query: 130 INVEEMFMAITNLVLRSKKE 149
INVE F + + +
Sbjct: 154 INVENAFFTLARDIKAKMDK 173
Score = 35.1 bits (80), Expect = 0.002
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKE 33
GI+ ETSAK NINVE F + + +
Sbjct: 141 YGIKFMETSAKANINVENAFFTLARDIKAKMDK 173
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 49.6 bits (117), Expect = 1e-08
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 90 LRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAIT 140
+ LVGNK D K+ V E+ +R A ++ + ETSAK NV+++F +
Sbjct: 108 IMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 158
Score = 35.3 bits (80), Expect = 0.001
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 1 MGIQLFETSAKDNINVEEMFMAIT 24
+ + ETSAK NV+++F +
Sbjct: 135 LNVMFIETSAKAGYNVKQLFRRVA 158
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 49.1 bits (116), Expect = 2e-08
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Query: 60 VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI 119
V V ++ YC LVGNK D ++V E +FA + +
Sbjct: 86 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEG-LKFARKHSM 144
Query: 120 QLFETSAKDNINVEEMFMAITNLVLRS 146
E SAK V+ F + ++++
Sbjct: 145 LFIEASAKTCDGVQCAFEELVEKIIQT 171
Score = 36.0 bits (82), Expect = 0.001
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 2 GIQLFETSAKDNINVEEMFMAITNLVLRS 30
+ E SAK V+ F + ++++
Sbjct: 143 SMLFIEASAKTCDGVQCAFEELVEKIIQT 171
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 48.4 bits (114), Expect = 3e-08
Identities = 18/73 (24%), Positives = 38/73 (52%)
Query: 74 WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVE 133
+ + L +VGNK D +++ V ++A+ +A +G + + TSAK N +E
Sbjct: 95 KNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIE 154
Query: 134 EMFMAITNLVLRS 146
E+F+ + ++ +
Sbjct: 155 ELFLDLCKRMIET 167
Score = 37.6 bits (86), Expect = 2e-04
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRS 30
+G + + TSAK N +EE+F+ + ++ +
Sbjct: 138 VGAKHYHTSAKQNKGIEELFLDLCKRMIET 167
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 48.4 bits (114), Expect = 4e-08
Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 1/92 (1%)
Query: 61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQM-GI 119
+ G ++ L ++ +VV A+ M
Sbjct: 82 DENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRC 141
Query: 120 QLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
+ET A +NV+ +F + V+ +K+Q+
Sbjct: 142 SYYETCATYGLNVDRVFQEVAQKVVTLRKQQQ 173
Score = 42.3 bits (98), Expect = 6e-06
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 2 GIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 35
+ET A +NV+ +F + V+ +K+Q+
Sbjct: 140 RCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQ 173
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 47.9 bits (113), Expect = 5e-08
Identities = 23/86 (26%), Positives = 41/86 (47%)
Query: 60 VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI 119
+ + I + + LVGNK D ++VV +E ++ A+ +G
Sbjct: 83 LMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGF 142
Query: 120 QLFETSAKDNINVEEMFMAITNLVLR 145
+ FE SAKDNINV++ F + +++
Sbjct: 143 EFFEASAKDNINVKQTFERLVDVICE 168
Score = 37.2 bits (85), Expect = 3e-04
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLR 29
+G + FE SAKDNINV++ F + +++
Sbjct: 140 LGFEFFEASAKDNINVKQTFERLVDVICE 168
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 48.1 bits (113), Expect = 5e-08
Identities = 18/88 (20%), Positives = 40/88 (45%)
Query: 61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ 120
+V + ++ + + L+GNK D ++ V E+ Q+ A Q+ +
Sbjct: 84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVT 143
Query: 121 LFETSAKDNINVEEMFMAITNLVLRSKK 148
E SAK +NV++ F + ++ + ++
Sbjct: 144 YMEASAKIRMNVDQAFHELVRVIRKFQE 171
Score = 38.1 bits (87), Expect = 2e-04
Identities = 7/32 (21%), Positives = 18/32 (56%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKK 32
+ + E SAK +NV++ F + ++ + ++
Sbjct: 140 LKVTYMEASAKIRMNVDQAFHELVRVIRKFQE 171
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 48.0 bits (113), Expect = 5e-08
Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 1/93 (1%)
Query: 60 VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI 119
+ + + + L GNK D + V +A RFA + +
Sbjct: 83 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENEL 142
Query: 120 QLFETSAKDNINVEEMFMAITNLVLRSKKEQKE 152
ETSA NVEE F+ +L K E E
Sbjct: 143 MFLETSALTGENVEEAFVQCARKILN-KIESGE 174
Score = 37.2 bits (85), Expect = 3e-04
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKE 36
+ ETSA NVEE F+ +L K E E
Sbjct: 140 NELMFLETSALTGENVEEAFVQCARKILN-KIESGE 174
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 47.6 bits (112), Expect = 6e-08
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
LVGNK+D K+ V E+A+ A+Q + ETSAK NV+++F + +
Sbjct: 114 LVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167
Score = 35.7 bits (81), Expect = 0.001
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLR 29
+ ETSAK NV+++F + +
Sbjct: 139 WNVNYVETSAKTRANVDKVFFDLMREIRA 167
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 47.5 bits (112), Expect = 7e-08
Identities = 21/102 (20%), Positives = 42/102 (41%)
Query: 47 IRKHTTKPGGKKKVCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVL 106
I + + + + C + I LVGNK D +++ V
Sbjct: 70 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVS 129
Query: 107 TEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKK 148
+ A+ F+ + ETSAK++ NVE++F+ + ++ +
Sbjct: 130 QQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR 171
Score = 37.1 bits (85), Expect = 4e-04
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKK 32
+ ETSAK++ NVE++F+ + ++ +
Sbjct: 140 QDMYYLETSAKESDNVEKLFLDLACRLISEAR 171
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 45.9 bits (107), Expect = 3e-07
Identities = 19/81 (23%), Positives = 32/81 (39%)
Query: 67 CAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSA 126
++ + I + LVGNK+D + + V + + A + ETSA
Sbjct: 91 ASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSA 150
Query: 127 KDNINVEEMFMAITNLVLRSK 147
NV+E+F I V +
Sbjct: 151 AVQHNVKELFEGIVRQVRLRR 171
Score = 35.5 bits (80), Expect = 0.001
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSK 31
+ ETSA NV+E+F I V +
Sbjct: 141 FDCKFIETSAAVQHNVKELFEGIVRQVRLRR 171
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 45.4 bits (106), Expect = 4e-07
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
LVGNK D + V + AQ A GI ETSAK VE+ F + + +
Sbjct: 113 LVGNK-CDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
Score = 35.7 bits (81), Expect = 0.001
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLR 29
GI ETSAK VE+ F + + +
Sbjct: 137 YGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 45.5 bits (106), Expect = 4e-07
Identities = 19/84 (22%), Positives = 35/84 (41%)
Query: 56 GKKKVCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFAN 115
G V +V + ++ + + + LVGNK D ++V+ E+ + A
Sbjct: 78 GYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE 137
Query: 116 QMGIQLFETSAKDNINVEEMFMAI 139
E+SAK+N ++F I
Sbjct: 138 SWNAAFLESSAKENQTAVDVFRRI 161
Score = 32.8 bits (73), Expect = 0.010
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 1 MGIQLFETSAKDNINVEEMFMAI 23
E+SAK+N ++F I
Sbjct: 139 WNAAFLESSAKENQTAVDVFRRI 161
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 45.4 bits (106), Expect = 5e-07
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ 120
+V ++ ++ + + LV NK D + V + + A + I
Sbjct: 83 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP 142
Query: 121 LFETSAKD-NINVEEMFMAITNLVLR 145
ETSAKD +NV++ F + ++ +
Sbjct: 143 YIETSAKDPPLNVDKTFHDLVRVIRQ 168
Score = 33.5 bits (75), Expect = 0.006
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 1 MGIQLFETSAKD-NINVEEMFMAITNLVLR 29
I ETSAKD +NV++ F + ++ +
Sbjct: 139 YNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 168
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 44.8 bits (105), Expect = 6e-07
Identities = 16/71 (22%), Positives = 30/71 (42%)
Query: 75 MTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEE 134
+ L+ D + +VV + + A ++GI E+SAK++ NV E
Sbjct: 94 KQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNE 153
Query: 135 MFMAITNLVLR 145
+F + L+
Sbjct: 154 IFFTLAKLIQE 164
Score = 36.7 bits (84), Expect = 5e-04
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLR 29
+GI E+SAK++ NV E+F + L+
Sbjct: 136 LGIPFIESSAKNDDNVNEIFFTLAKLIQE 164
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 45.0 bits (105), Expect = 6e-07
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 60 VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI 119
V + N ++ + LVGNK D V T+ AQ+FA+ +
Sbjct: 82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSM 141
Query: 120 QLFETSAK---DNINVEEMFMAI 139
LFETSAK DN +VE +FM +
Sbjct: 142 PLFETSAKNPNDNDHVEAIFMTL 164
Score = 31.5 bits (70), Expect = 0.032
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 1 MGIQLFETSAK---DNINVEEMFMAI 23
+ LFETSAK DN +VE +FM +
Sbjct: 139 HSMPLFETSAKNPNDNDHVEAIFMTL 164
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 44.9 bits (105), Expect = 7e-07
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVLRS 146
++ D ++ V TE+AQ + G FETSAKD NV F VL +
Sbjct: 119 VILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 174
Score = 36.5 bits (83), Expect = 6e-04
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 2 GIQLFETSAKDNINVEEMFMAITNLVLRS 30
FETSAKD NV F VL +
Sbjct: 146 DYPYFETSAKDATNVAAAFEEAVRRVLAT 174
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 43.5 bits (101), Expect = 2e-06
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ 120
+ + ++ + L LVGNK D + V TE+ ++ A ++
Sbjct: 80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACA 139
Query: 121 LFETSAKDN-INVEEMFMAITNLVLRSK 147
+E SA N+ E+F + V R +
Sbjct: 140 FYECSACTGEGNITEIFYELCREVRRRR 167
Score = 32.7 bits (73), Expect = 0.013
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 1 MGIQLFETSAKDN-INVEEMFMAITNLVLRSK 31
+ +E SA N+ E+F + V R +
Sbjct: 136 LACAFYECSACTGEGNITEIFYELCREVRRRR 167
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 43.5 bits (101), Expect = 3e-06
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
++GNK D ++V ++ I FETSAK+ INVE+ F I L+ + E +
Sbjct: 116 VLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 175
Score = 36.2 bits (82), Expect = 7e-04
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 35
I FETSAK+ INVE+ F I L+ + E +
Sbjct: 141 NNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 175
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 43.5 bits (101), Expect = 3e-06
Identities = 7/80 (8%), Positives = 19/80 (23%), Gaps = 3/80 (3%)
Query: 65 NECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKV---VLTEDAQRFANQMGIQL 121
+ + + L +GL + NK D + + +
Sbjct: 94 DRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHI 153
Query: 122 FETSAKDNINVEEMFMAITN 141
A + + + +
Sbjct: 154 QACCALTGEGLCQGLEWMMS 173
Score = 31.1 bits (69), Expect = 0.047
Identities = 1/24 (4%), Positives = 6/24 (25%)
Query: 2 GIQLFETSAKDNINVEEMFMAITN 25
+ A + + + +
Sbjct: 150 QWHIQACCALTGEGLCQGLEWMMS 173
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 43.1 bits (100), Expect = 3e-06
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 13/89 (14%)
Query: 78 CPIIYCWLFPSGLRLVGNKNDDPQKKVVL------------TEDAQRFANQMGIQLF-ET 124
P I + LVG + D + E A++ A + + E
Sbjct: 98 VPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVEC 157
Query: 125 SAKDNINVEEMFMAITNLVLRSKKEQKER 153
SA ++ +F L + +K R
Sbjct: 158 SALTQKGLKNVFDEAILAALEPPEPKKSR 186
Score = 35.8 bits (81), Expect = 0.001
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 2 GIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKER 37
++ E SA ++ +F L + +K R
Sbjct: 151 AVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSR 186
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 43.1 bits (100), Expect = 3e-06
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 91 RLVGNKNDDPQKKVVLTEDAQRFANQMG-IQLFETSAKDNINVEEMFMAITNLVLR 145
+ +++ V E+ + AN++G E SAK V E+F T L+
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177
Score = 35.8 bits (81), Expect = 0.001
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 3 IQLFETSAKDNINVEEMFMAITNLVLR 29
E SAK V E+F T L+
Sbjct: 151 FGYMECSAKTKDGVREVFEMATRAALQ 177
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 42.7 bits (99), Expect = 4e-06
Identities = 15/80 (18%), Positives = 31/80 (38%)
Query: 61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ 120
T + + + + + + ++ V E+ ++ A + G+
Sbjct: 85 VTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLL 144
Query: 121 LFETSAKDNINVEEMFMAIT 140
FETSAK NV ++F+ I
Sbjct: 145 FFETSAKTGENVNDVFLGIG 164
Score = 33.9 bits (76), Expect = 0.006
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 1 MGIQLFETSAKDNINVEEMFMAIT 24
G+ FETSAK NV ++F+ I
Sbjct: 141 KGLLFFETSAKTGENVNDVFLGIG 164
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 42.7 bits (99), Expect = 5e-06
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 95 NKNDDPQKKVVLTEDAQRFANQMGIQLF-ETSAKDNINVEEMFMAITNLVL 144
+ +D ++K + E Q+ A ++G + E SA ++ +F +L
Sbjct: 133 ARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 183
Score = 33.4 bits (75), Expect = 0.007
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 6 FETSAKDNINVEEMFMAITNLVL 28
E SA ++ +F +L
Sbjct: 161 VECSALTQKGLKTVFDEAIIAIL 183
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 41.9 bits (97), Expect = 8e-06
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQM-GIQLFETSAKDNINVEEMFMAITNLVLR 145
LVGNK D ++VV E Q A Q E+SAK INV E+F + + R
Sbjct: 113 LVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
Score = 36.1 bits (82), Expect = 8e-04
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLR 29
E+SAK INV E+F + + R
Sbjct: 139 CNCAFLESSAKSKINVNEIFYDLVRQINR 167
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 41.9 bits (97), Expect = 9e-06
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 74 WMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVE 133
+ + + L GNK D K+ V ++AQ +A+ + ETSAK ++NV
Sbjct: 98 KNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVN 157
Query: 134 EMFMAITNLVLRS 146
E+FMAI + ++
Sbjct: 158 EIFMAIAKKLPKN 170
Score = 35.4 bits (80), Expect = 0.001
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRS 30
+ ETSAK ++NV E+FMAI + ++
Sbjct: 141 NSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 41.6 bits (96), Expect = 9e-06
Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 60 VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGI 119
V + + ++ + + LV NK D + E+A+ A ++ +
Sbjct: 81 VFSTTDRESFEAISSW--REKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKL 138
Query: 120 QLFETSAKDNINVEEMFMAITNLVLR 145
+ + TS K+++NV E+F + L+
Sbjct: 139 RFYRTSVKEDLNVSEVFKYLAEKHLQ 164
Score = 34.7 bits (78), Expect = 0.002
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLR 29
+ ++ + TS K+++NV E+F + L+
Sbjct: 136 LKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 41.5 bits (96), Expect = 1e-05
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 13/65 (20%)
Query: 93 VGNKNDDPQKKVVLTED------------AQRFANQMG-IQLFETSAKDNINVEEMFMAI 139
VG K D K + + A ++G ++ E SA ++ +F
Sbjct: 115 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 174
Query: 140 TNLVL 144
VL
Sbjct: 175 IRAVL 179
Score = 35.0 bits (79), Expect = 0.002
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 3 IQLFETSAKDNINVEEMFMAITNLVL 28
++ E SA ++ +F VL
Sbjct: 154 VKYLECSALTQRGLKTVFDEAIRAVL 179
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 40.5 bits (93), Expect = 3e-05
Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 4/91 (4%)
Query: 61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVV---LTEDAQRFANQM 117
+ + + L + L + NK D Q
Sbjct: 80 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDR 139
Query: 118 GIQLFETSAKDNINVEEMFMAITNLVLRSKK 148
Q+F+TSA ++E + L+S++
Sbjct: 140 KWQIFKTSATKGTGLDEAMEWLVET-LKSRQ 169
Score = 30.8 bits (68), Expect = 0.051
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 2 GIQLFETSAKDNINVEEMFMAITNLVLRSKK 32
Q+F+TSA ++E + L+S++
Sbjct: 140 KWQIFKTSATKGTGLDEAMEWLVET-LKSRQ 169
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 39.8 bits (92), Expect = 5e-05
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 92 LVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQK 151
LVGNK D K+VV + A+ FA+ + ETSA D+ NVE+ F+ + + S +Q
Sbjct: 116 LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQN 175
Query: 152 ERQ 154
+
Sbjct: 176 LNE 178
Score = 32.5 bits (73), Expect = 0.015
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQ 38
+ ETSA D+ NVE+ F+ + + S +Q +
Sbjct: 141 NKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNE 178
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 38.9 bits (89), Expect = 8e-05
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 14/86 (16%)
Query: 74 WMTICPIIYCWLFPSGLRLVGNKND------------DPQKKVVLTEDAQRFANQMGIQL 121
I + + + LVG K+D + ++ V + A Q+G
Sbjct: 93 LKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 152
Query: 122 F-ETSAKDNIN-VEEMFMAITNLVLR 145
+ E SA + N V ++F T +
Sbjct: 153 YIECSALQSENSVRDIFHVATLACVN 178
Score = 27.7 bits (60), Expect = 0.68
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 6 FETSAKDNIN-VEEMFMAITNLVLR 29
E SA + N V ++F T +
Sbjct: 154 IECSALQSENSVRDIFHVATLACVN 178
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 38.9 bits (89), Expect = 9e-05
Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 3/76 (3%)
Query: 67 CAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDP---QKKVVLTEDAQRFANQMGIQLFE 123
+ L + ++GNK D P +K ++ + I +
Sbjct: 84 EKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYS 143
Query: 124 TSAKDNINVEEMFMAI 139
S K+ N++ +
Sbjct: 144 ISCKEKDNIDITLQWL 159
Score = 29.3 bits (64), Expect = 0.16
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 2 GIQLFETSAKDNINVEEMFMAI 23
I + S K+ N++ +
Sbjct: 138 EICCYSISCKEKDNIDITLQWL 159
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 38.9 bits (89), Expect = 9e-05
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 61 CTVLNECAWLGCGWMTICPIIYCWLFPSG---LRLVGNKNDDPQKKVVLTEDAQRFANQM 117
C ++ + + + + L GNK D +KV + F +
Sbjct: 78 CAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKK 135
Query: 118 GIQLFETSAKDNINVEEMFMAITNLVL 144
+Q ++ SAK N N E+ F+ + ++
Sbjct: 136 NLQYYDISAKSNYNFEKPFLWLARKLI 162
Score = 34.2 bits (77), Expect = 0.004
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 1 MGIQLFETSAKDNINVEEMFMAITNLVL 28
+Q ++ SAK N N E+ F+ + ++
Sbjct: 135 KNLQYYDISAKSNYNFEKPFLWLARKLI 162
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 38.8 bits (89), Expect = 1e-04
Identities = 10/90 (11%), Positives = 19/90 (21%), Gaps = 9/90 (10%)
Query: 61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVV---LTEDAQRFANQM 117
+ L L NK D P E
Sbjct: 98 DRMSTASKELHLMLQEEELQDAALLV------FANKQDQPGALSASEVSKELNLVELKDR 151
Query: 118 GIQLFETSAKDNINVEEMFMAITNLVLRSK 147
+ +SA + E + +++ +
Sbjct: 152 SWSIVASSAIKGEGITEGLDWLIDVIKEEQ 181
Score = 31.5 bits (70), Expect = 0.035
Identities = 3/30 (10%), Positives = 11/30 (36%)
Query: 2 GIQLFETSAKDNINVEEMFMAITNLVLRSK 31
+ +SA + E + +++ +
Sbjct: 152 SWSIVASSAIKGEGITEGLDWLIDVIKEEQ 181
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 38.0 bits (87), Expect = 2e-04
Identities = 7/53 (13%), Positives = 13/53 (24%), Gaps = 3/53 (5%)
Query: 92 LVGNKNDDP---QKKVVLTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITN 141
+ NK D + Q+ SA V++ +
Sbjct: 122 IFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCK 174
Score = 29.5 bits (65), Expect = 0.14
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 2 GIQLFETSAKDNINVEEMFMAITN 25
Q+ SA V++ +
Sbjct: 151 VWQIQSCSALTGEGVQDGMNWVCK 174
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 37.7 bits (86), Expect = 2e-04
Identities = 17/88 (19%), Positives = 31/88 (35%)
Query: 61 CTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQ 120
+ ++ + FP + ++ +K V + + I
Sbjct: 88 ASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIP 147
Query: 121 LFETSAKDNINVEEMFMAITNLVLRSKK 148
LF TSAK+ INV+ F I L+ +
Sbjct: 148 LFLTSAKNAINVDTAFEEIARSALQQNQ 175
Score = 35.4 bits (80), Expect = 0.002
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 3 IQLFETSAKDNINVEEMFMAITNLVLRSKK 32
I LF TSAK+ INV+ F I L+ +
Sbjct: 146 IPLFLTSAKNAINVDTAFEEIARSALQQNQ 175
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 36.6 bits (83), Expect = 5e-04
Identities = 10/82 (12%), Positives = 21/82 (25%), Gaps = 3/82 (3%)
Query: 63 VLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDP---QKKVVLTEDAQRFANQMGI 119
+ + + L + L + NK D P + +
Sbjct: 77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNW 136
Query: 120 QLFETSAKDNINVEEMFMAITN 141
+ T A + E ++N
Sbjct: 137 YIQATCATSGDGLYEGLDWLSN 158
Score = 30.0 bits (66), Expect = 0.11
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 2 GIQLFETSAKDNINVEEMFMAITN 25
+ T A + E ++N
Sbjct: 135 NWYIQATCATSGDGLYEGLDWLSN 158
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 36.5 bits (83), Expect = 8e-04
Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 10/99 (10%)
Query: 57 KKKVCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQ 116
K T++ + + + + + + A+ F +
Sbjct: 98 KALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILK 157
Query: 117 MGIQL----------FETSAKDNINVEEMFMAITNLVLR 145
M + L T A D N+ +F A+ + +L+
Sbjct: 158 MFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 196
Score = 31.8 bits (71), Expect = 0.024
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 3 IQLFETSAKDNINVEEMFMAITNLVLR 29
I T A D N+ +F A+ + +L+
Sbjct: 170 IYSHFTCATDTENIRFVFAAVKDTILQ 196
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 36.1 bits (82), Expect = 8e-04
Identities = 8/82 (9%), Positives = 20/82 (24%), Gaps = 3/82 (3%)
Query: 63 VLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKV---VLTEDAQRFANQMGI 119
+ I + + + + NK D P + +
Sbjct: 89 CADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNW 148
Query: 120 QLFETSAKDNINVEEMFMAITN 141
+ + A + E +T+
Sbjct: 149 YVQPSCATSGDGLYEGLTWLTS 170
Score = 30.3 bits (67), Expect = 0.084
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 2 GIQLFETSAKDNINVEEMFMAITN 25
+ + A + E +T+
Sbjct: 147 NWYVQPSCATSGDGLYEGLTWLTS 170
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 35.4 bits (80), Expect = 0.001
Identities = 11/70 (15%), Positives = 19/70 (27%)
Query: 67 CAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSA 126
A + P + V ++ T +QR Q +++F S
Sbjct: 91 DALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 150
Query: 127 KDNINVEEMF 136
E F
Sbjct: 151 VMRNGYLEAF 160
Score = 28.5 bits (62), Expect = 0.34
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 2 GIQLFETSAKDNINVEEMF 20
+++F S E F
Sbjct: 142 PVEVFMCSVVMRNGYLEAF 160
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 33.7 bits (76), Expect = 0.006
Identities = 13/113 (11%), Positives = 28/113 (24%), Gaps = 27/113 (23%)
Query: 60 VCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMG- 118
+ + + + L NK D ++KV + F G
Sbjct: 84 LMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGD 143
Query: 119 --------------------------IQLFETSAKDNINVEEMFMAITNLVLR 145
+ T+A + N+ +F + + +L
Sbjct: 144 PHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 196
Score = 28.7 bits (63), Expect = 0.28
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 3 IQLFETSAKDNINVEEMFMAITNLVLR 29
+ T+A + N+ +F + + +L
Sbjct: 170 LYHHFTTAINTENIRLVFRDVKDTILH 196
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 32.0 bits (71), Expect = 0.026
Identities = 8/104 (7%), Positives = 21/104 (20%), Gaps = 3/104 (2%)
Query: 36 ERQVLNSDTVNIRKHTTKPGGKKKVCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGN 95
+ + + + + L+ I+ +
Sbjct: 75 KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEER 134
Query: 96 KNDDPQKKVVLTEDAQ---RFANQMGIQLFETSAKDNINVEEMF 136
+ T + N +++F S E F
Sbjct: 135 LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGF 178
Score = 27.7 bits (60), Expect = 0.57
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 2 GIQLFETSAKDNINVEEMF 20
+++F S E F
Sbjct: 160 PLEVFMCSVLKRQGYGEGF 178
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 31.5 bits (70), Expect = 0.030
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 108 EDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLR 145
ED + + I T A D NV+ +F A+T+++++
Sbjct: 156 EDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 193
Score = 31.5 bits (70), Expect = 0.038
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 6 FETSAKDNINVEEMFMAITNLVLR 29
T A D NV+ +F A+T+++++
Sbjct: 170 HFTCATDTKNVQFVFDAVTDVIIK 193
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 31.2 bits (69), Expect = 0.044
Identities = 4/83 (4%), Positives = 18/83 (21%), Gaps = 4/83 (4%)
Query: 65 NECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTED----AQRFANQMGIQ 120
+ + + ++ L+ D + +
Sbjct: 80 ADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWR 139
Query: 121 LFETSAKDNINVEEMFMAITNLV 143
+ SA ++ + + +
Sbjct: 140 IQGCSAVTGEDLLPGIDWLLDDI 162
Score = 27.7 bits (60), Expect = 0.65
Identities = 2/26 (7%), Positives = 9/26 (34%)
Query: 2 GIQLFETSAKDNINVEEMFMAITNLV 27
++ SA ++ + + +
Sbjct: 137 HWRIQGCSAVTGEDLLPGIDWLLDDI 162
>d2o3la1 a.69.4.1 (A:14-95) Hypothetical protein BCE3448 {Bacillus
cereus [TaxId: 1396]}
Length = 82
Score = 28.5 bits (64), Expect = 0.14
Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 106 LTEDAQRFANQMGIQLFETSAKDNINVEEMFMAITNLVLRSKKEQKE-RQVLNSD 159
L ED Q ++ ++ SA + +++ + + +L E ++ + D
Sbjct: 12 LPEDYQFVFKKIQNYMWNFSAGNGMDMLHIQYELIDLFEAGAAEGRQVLDITGED 66
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 25.9 bits (55), Expect = 2.4
Identities = 8/76 (10%), Positives = 22/76 (28%), Gaps = 3/76 (3%)
Query: 71 GCGWMTICPIIYCWLFPSGLRLVGNKND---DPQKKVVLTEDAQRFANQMGIQLFETSAK 127
+ + + + ++ K D + Q +L S++
Sbjct: 118 APSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSE 177
Query: 128 DNINVEEMFMAITNLV 143
+E + AI ++
Sbjct: 178 TKKGKDEAWGAIKKMI 193
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 25.9 bits (56), Expect = 2.9
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 6 FETSAKDNINVEEMFMAITNLVLR 29
T A D N+ +F +++ R
Sbjct: 192 HFTCAVDTENIRRVFNDCRDIIQR 215
Score = 25.9 bits (56), Expect = 2.9
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 122 FETSAKDNINVEEMFMAITNLVLR 145
T A D N+ +F +++ R
Sbjct: 192 HFTCAVDTENIRRVFNDCRDIIQR 215
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 25.5 bits (54), Expect = 3.1
Identities = 8/82 (9%), Positives = 20/82 (24%)
Query: 58 KKVCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQM 117
+++ + W + K +T + +
Sbjct: 76 QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVN 135
Query: 118 GIQLFETSAKDNINVEEMFMAI 139
G L SA+ V+ + +
Sbjct: 136 GHALIRLSARTGEGVDVLRNHL 157
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 280
Score = 25.7 bits (55), Expect = 3.2
Identities = 10/84 (11%), Positives = 27/84 (32%), Gaps = 16/84 (19%)
Query: 53 KPGGKKKVCTVLNECAWLGCGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQR 112
K + V++ + W Y FP D + + ++D +
Sbjct: 151 GTNAKM-LIIVVSGSSGWDKLWKK-----YGSRFP----------QDDLCQYITSDDLTQ 194
Query: 113 FANQMGIQLFETSAKDNINVEEMF 136
+ +G++ +++ + F
Sbjct: 195 MLDNLGLKYECYDLLSTMDISDCF 218
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 25.1 bits (53), Expect = 5.1
Identities = 19/149 (12%), Positives = 43/149 (28%), Gaps = 9/149 (6%)
Query: 3 IQLFETSAKDNINVEEMFMAITNLVLRSKKEQKERQVLNSDTVNIRKHTTKPGGKKKVCT 62
++ TSA D + + IT + S + + ++ D +
Sbjct: 26 TEIASTSAHDKLPESQKRG-ITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIID 84
Query: 63 VLNECAWLGCGWMTICPIIYCWLFPSGLRLVG--------NKNDDPQKKVVLTEDAQRFA 114
+ G T L + ++ + + ++++ Q
Sbjct: 85 LALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTH 144
Query: 115 NQMGIQLFETSAKDNINVEEMFMAITNLV 143
N + SAK V+E+ I +
Sbjct: 145 NLKNSSIIPISAKTGFGVDELKNLIITTL 173
>d1y88a2 c.52.1.30 (A:3-127) Hypothetical protein AF1548, N-terminal
domain {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 125
Score = 24.3 bits (52), Expect = 6.0
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 107 TEDAQRFANQMGIQLFETSAKDNINVEEM 135
+E+A+++A +GI+L S + +E +
Sbjct: 91 SEEAKKYAGCVGIKLTGWSYPEKEGIEVL 119
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 24.5 bits (52), Expect = 7.3
Identities = 9/72 (12%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 72 CGWMTICPIIYCWLFPSGLRLVGNKNDDPQKKVVLTEDAQRFANQMGIQLFETSAKDNIN 131
+ I + + + + +V + Q + + +A + + SA IN
Sbjct: 132 FVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAEN--VPIIPVSALHKIN 189
Query: 132 VEEMFMAITNLV 143
++ + I +
Sbjct: 190 IDSLIEGIEEYI 201
>d2hh6a1 a.69.4.1 (A:1-112) Uncharacterized protein BH3980 {Bacillus
halodurans [TaxId: 86665]}
Length = 112
Score = 23.6 bits (51), Expect = 9.3
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 7/63 (11%)
Query: 102 KKVVLTEDAQRFANQMGI-QLFETSAKDNINVEEMF----MAITNLVLRSKKEQ--KERQ 154
T+ GI LFE A + V ++ A + +++ K K R
Sbjct: 44 TSGGPTDWQDTKRIFGGILDLFEEGAAEGKKVTDLTGEDVAAFCDELMKDTKTWMDKYRT 103
Query: 155 VLN 157
LN
Sbjct: 104 KLN 106
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.396
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 608,099
Number of extensions: 26218
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 133
Length of query: 177
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 97
Effective length of database: 1,309,196
Effective search space: 126992012
Effective search space used: 126992012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.7 bits)