Query psy14161
Match_columns 91
No_of_seqs 102 out of 311
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 21:02:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14161.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14161hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mca_B Protein DOM34, elongati 100.0 4.3E-33 1.5E-37 216.0 1.2 89 1-90 1-89 (390)
2 3oby_A Protein pelota homolog; 100.0 7.1E-32 2.4E-36 207.2 6.8 88 1-91 1-88 (352)
3 2qi2_A Pelota, cell division p 100.0 1.3E-31 4.5E-36 205.1 6.3 87 1-91 1-88 (347)
4 3agj_B Protein pelota homolog; 100.0 1.9E-30 6.5E-35 198.8 11.6 81 1-89 3-83 (358)
5 3j15_A Protein pelota; ribosom 100.0 3E-32 1E-36 209.0 0.7 87 1-91 1-88 (357)
6 2vgn_A DOM34; translation term 100.0 1.1E-30 3.8E-35 202.0 9.1 86 1-90 1-89 (386)
7 3obw_A Protein pelota homolog; 100.0 3.8E-30 1.3E-34 198.2 9.5 82 1-91 21-102 (364)
8 1dt9_A ERF1, protein (eukaryot 86.4 0.0004 1.4E-08 53.9 -14.3 60 29-88 34-100 (437)
9 3i2z_B RNA chaperone, negative 42.7 29 0.00098 20.0 3.3 33 10-44 15-56 (71)
10 1ynx_A Replication factor-A pr 31.8 54 0.0018 20.2 3.6 34 12-46 48-81 (114)
11 1gl4_A Nidogen-1, entactin; im 31.7 1.3E+02 0.0044 22.1 6.1 28 20-52 184-211 (285)
12 2xzm_O RPS13E; ribosome, trans 29.5 13 0.00044 25.4 0.3 13 19-31 82-94 (153)
13 3u5c_N S27A, YS15, 40S ribosom 29.4 13 0.00044 25.3 0.3 13 19-31 80-92 (151)
14 3qr7_A GPV, baseplate assembly 27.3 29 0.001 21.8 1.7 16 72-87 13-28 (115)
15 2k75_A Uncharacterized protein 25.5 79 0.0027 19.2 3.5 26 12-45 46-71 (106)
16 2nn6_I 3'-5' exoribonuclease C 23.3 41 0.0014 23.3 2.0 17 29-45 131-147 (209)
17 3h9w_A Diguanylate cyclase wit 21.6 1.1E+02 0.0038 16.7 4.4 48 32-90 58-105 (115)
18 3m7n_A Putative uncharacterize 21.5 46 0.0016 22.3 1.9 17 29-45 107-123 (179)
19 1a62_A RHO; transcription term 20.7 77 0.0026 20.4 2.8 54 12-78 60-124 (130)
20 2kcm_A Cold shock domain famil 20.3 93 0.0032 18.0 2.9 33 10-44 10-51 (74)
21 3e20_C Eukaryotic peptide chai 20.1 0.3 1E-05 38.1 -10.6 72 11-89 32-106 (441)
22 1d1n_A Initiation factor 2; be 20.1 26 0.0009 22.0 0.4 17 31-47 79-95 (99)
No 1
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.97 E-value=4.3e-33 Score=215.95 Aligned_cols=89 Identities=49% Similarity=0.817 Sum_probs=55.8
Q ss_pred CeeEeecccCCCCCeeEEEeeCCCchhhhhhhhhcCCCEEEEEeeEEEeeecCCCCccceEEEEEEEEEEEEEeecCCCC
Q psy14161 1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQAC 80 (91)
Q Consensus 1 MKi~~~~~~~k~~~g~i~l~pE~~dDlW~lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~iefd~~~~ 80 (91)
|||+++.+ .++++|+|+|+||++||||||||||++||.|+|+|+|+|++++++|+++++|++++|+|+||+++|||+++
T Consensus 1 Mkl~~~~~-~~~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T~Rkv~~~~~~~~~~~~r~~~~L~i~Ve~ief~~~~~ 79 (390)
T 3mca_B 1 MKLIQKNI-EKNGSGWITMCPEEPEDMWHLYNILQVGDQLKASTVRRVVKVGATGSTSGSRVVMKLRILVENMDFDTKAA 79 (390)
T ss_dssp -------C-BCC-CBCCBC---CTHHHHHHHHHCCTTCEEBCCCCCC--------------------EECCCEEECTTSS
T ss_pred Cccccccc-cCCCCceEEEEeCCHHHHHHHHHhcCCCCEEEEEEEEEEEccCCCCCCceEEEEEEEEEEEEEEEecCCCC
Confidence 99999999 89999999999999999999999999999999999999999988888889999999999999999999999
Q ss_pred eEEEEEEEcc
Q psy14161 81 VLRLKGNCGN 90 (91)
Q Consensus 81 ~Lri~G~i~~ 90 (91)
+|||+|+|+.
T Consensus 80 ~Lri~G~i~~ 89 (390)
T 3mca_B 80 QLHIKGRTTE 89 (390)
T ss_dssp CEEEC-CBCS
T ss_pred EEEEEEEEec
Confidence 9999999975
No 2
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=99.97 E-value=7.1e-32 Score=207.17 Aligned_cols=88 Identities=33% Similarity=0.521 Sum_probs=70.3
Q ss_pred CeeEeecccCCCCCeeEEEeeCCCchhhhhhhhhcCCCEEEEEeeEEEeeecCCCCccceEEEEEEEEEEEEEeecCCCC
Q psy14161 1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQAC 80 (91)
Q Consensus 1 MKi~~~~~~~k~~~g~i~l~pE~~dDlW~lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~iefd~~~~ 80 (91)
|||++++ .++++|.|+|+||++||||||||||++||.|+|.| |||+.+++++...++|++++|+|+||+++|||+++
T Consensus 1 Mki~~~~--~~~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T-Rkv~~~~~~~~~~~er~~~~L~i~Ve~ief~~~~~ 77 (352)
T 3oby_A 1 MQIVEEN--LRDNEGEIKLIPETLDDLWHLRFIIEKGDVVFATT-KRASQSSDKLRSDKEMVTVRLGIEVEKVEFHRFAN 77 (352)
T ss_dssp CEEEEEC--CBTTEEEEEEECCSHHHHHHHHHHSCTTCEEEECC-C---------------CCCCEEEEEEEEEECSSSS
T ss_pred Cceeeec--cCCCceeEEEEeCChHHHHHHHHhccCCCEEEEEE-EEEeccCCCCCcceEEEEEEEEEEEEEEEecCCCC
Confidence 9999999 57899999999999999999999999999999999 99999887874445999999999999999999999
Q ss_pred eEEEEEEEccC
Q psy14161 81 VLRLKGNCGNC 91 (91)
Q Consensus 81 ~Lri~G~i~~~ 91 (91)
+|||+|+|+.+
T Consensus 78 ~Lri~G~i~~~ 88 (352)
T 3oby_A 78 RLRVSGKIVAG 88 (352)
T ss_dssp CEEEEEEEEEC
T ss_pred EEEEEEEEEec
Confidence 99999999864
No 3
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=99.97 E-value=1.3e-31 Score=205.08 Aligned_cols=87 Identities=26% Similarity=0.473 Sum_probs=68.6
Q ss_pred CeeEeecccCCCCCeeEEEeeCCCchhhhhhhhhcCCCEEEEEeeEEEeeec-CCCCccceEEEEEEEEEEEEEeecCCC
Q psy14161 1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSES-NTGSSTSSRVRTMLTISVESIDFDTQA 79 (91)
Q Consensus 1 MKi~~~~~~~k~~~g~i~l~pE~~dDlW~lynli~~GD~V~a~T~Rkv~~~~-~~g~~~~~r~~~~L~i~Ve~iefd~~~ 79 (91)
|||+++++ .+|.|+|+||++||||||||||++||.|+|.|+|+|++++ .+|+++++|++++|+|+||+++||+++
T Consensus 1 Mki~~~~~----~~g~v~l~pE~~dDlw~lynli~~GD~v~a~T~Rkv~~~~~~~g~~~~er~~~~l~i~Ve~v~f~~~~ 76 (347)
T 2qi2_A 1 MRILEEDL----KNSTYRIRIESLDDLWYLRNILSEGDEVSAITFRRVEESADVQRSRERERIPITIRLKVEKIEFQDFD 76 (347)
T ss_dssp CEEEEEET----TTTEEEEECCSSHHHHHHHHHCCTTCEEEEEEC-------------CCEEEEEEEEEEECCTTCSCEE
T ss_pred CceeEeec----cCcEEEEEECCHHHHHHHHHhCCCCCEEEEEEEEEEecccccCCCCccEEEEEEEEEEEEEEEccCCC
Confidence 99999998 4999999999999999999999999999999999999854 556778999999999999999999999
Q ss_pred CeEEEEEEEccC
Q psy14161 80 CVLRLKGNCGNC 91 (91)
Q Consensus 80 ~~Lri~G~i~~~ 91 (91)
++||++|.|+.|
T Consensus 77 ~~Lri~G~vv~~ 88 (347)
T 2qi2_A 77 NRLRILGTVIEG 88 (347)
T ss_dssp EEEEECC-----
T ss_pred CEEecceEEEEc
Confidence 999999999876
No 4
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=99.97 E-value=1.9e-30 Score=198.76 Aligned_cols=81 Identities=35% Similarity=0.485 Sum_probs=77.2
Q ss_pred CeeEeecccCCCCCeeEEEeeCCCchhhhhhhhhcCCCEEEEEeeEEEeeecCCCCccceEEEEEEEEEEEEEeecCCCC
Q psy14161 1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQAC 80 (91)
Q Consensus 1 MKi~~~~~~~k~~~g~i~l~pE~~dDlW~lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~iefd~~~~ 80 (91)
|||+++++ .+|+|+|+||++||||||||||++||.|+|.|+|+|++ |+.+++|++++|+|+||+++|||+++
T Consensus 3 Mki~~~~~----~~g~v~l~pe~~dDlw~ly~li~~gD~v~~~t~R~v~~----g~~~~~r~~~~l~i~Ve~~~f~~~~~ 74 (358)
T 3agj_B 3 MRVEVLDN----KRRIVRLRPESEEDLWLLRITLRPGDVVRKRTSRDVPV----GSGRKERVVMTLRIRLDSIEFQPFTG 74 (358)
T ss_dssp CEEEECSS----SSCEEEEECCSHHHHHHHHHHCCTTCEEEEEEEEEECC----SSSCCEEEEEEEEEEEEEEEECTTSC
T ss_pred CEEEEeec----cCCEEEEEECCHHHHHHHHHhCCCCCEEEEEEEEEEec----CCCccEEEEEEEEEEEEEEEcCCCCC
Confidence 99999998 49999999999999999999999999999999999986 66678999999999999999999999
Q ss_pred eEEEEEEEc
Q psy14161 81 VLRLKGNCG 89 (91)
Q Consensus 81 ~Lri~G~i~ 89 (91)
.|||+|+|+
T Consensus 75 ~Lri~G~i~ 83 (358)
T 3agj_B 75 KLRISGIVV 83 (358)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEc
Confidence 999999986
No 5
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=99.97 E-value=3e-32 Score=208.97 Aligned_cols=87 Identities=28% Similarity=0.493 Sum_probs=82.0
Q ss_pred CeeEeecccCCCCCeeEEEeeCCCchhhhhhhhhcCCCEEEEEeeEEEeeecCC-CCccceEEEEEEEEEEEEEeecCCC
Q psy14161 1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNT-GSSTSSRVRTMLTISVESIDFDTQA 79 (91)
Q Consensus 1 MKi~~~~~~~k~~~g~i~l~pE~~dDlW~lynli~~GD~V~a~T~Rkv~~~~~~-g~~~~~r~~~~L~i~Ve~iefd~~~ 79 (91)
|||++++. ++|+|+|+||++||||||||||++||.|+|+|+|+|++++++ ++++++|++++|+|+||+++||+++
T Consensus 1 Mki~~~~~----~~g~v~l~pE~~dDlw~ly~li~~gD~v~a~T~Rkv~~~~~~~~~~~~~r~~~~l~i~Ve~~ef~~~~ 76 (357)
T 3j15_A 1 MEILEEKP----KEGKVKVKAETLDDLWHLYHIIDPGDIVYAKTLRKQAQRADSLRAEKVEVIPVFLGVQAEKINFHKFA 76 (357)
T ss_dssp CCCEECST----TSSSEECCCCSHHHHHHHHHHCCSSCEEECCCCCCCCCCCSSSCCCCCCCCCCCCEEECSCEEEETTT
T ss_pred CceeEecC----CCceEEEEECChHHHHHHHHhCCCCCEEEEEEEEEEEcCCCCcCCCccEEEEEEEEEEEEEEEecCCC
Confidence 99999884 899999999999999999999999999999999999998876 4778899999999999999999999
Q ss_pred CeEEEEEEEccC
Q psy14161 80 CVLRLKGNCGNC 91 (91)
Q Consensus 80 ~~Lri~G~i~~~ 91 (91)
++|||+|+|+.+
T Consensus 77 ~~Lri~G~i~~~ 88 (357)
T 3j15_A 77 NQVRVTGPIVYA 88 (357)
T ss_dssp TEEEECCBEEEC
T ss_pred CEEEEEEEEEec
Confidence 999999999864
No 6
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=99.97 E-value=1.1e-30 Score=201.95 Aligned_cols=86 Identities=27% Similarity=0.413 Sum_probs=70.8
Q ss_pred CeeEeec---ccCCCCCeeEEEeeCCCchhhhhhhhhcCCCEEEEEeeEEEeeecCCCCccceEEEEEEEEEEEEEeecC
Q psy14161 1 MKLVHKN---INDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDT 77 (91)
Q Consensus 1 MKi~~~~---~~~k~~~g~i~l~pE~~dDlW~lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~iefd~ 77 (91)
|||++++ + ++ ++|+|+|+||++||||||||||++||.|+|+|+|+|++ +++|+ +++|++++|+|+||+++|||
T Consensus 1 Mki~~~~~~~~-~~-~~g~v~l~pE~~dDlw~lynli~~gD~v~~~T~Rkv~~-~~~g~-~~~r~~~~L~i~Ve~~~f~~ 76 (386)
T 2vgn_A 1 MKVISLKKDSF-NK-GGAVITLLPEDKEDLFTVYQIVDKDDELIFKKKFTSKL-DEAGK-KKSTDLVKLKIKVISEDFDM 76 (386)
T ss_dssp CEEEEEEECSS-CT-TCEEEEEECCSHHHHHHHHTTCCTTCEEEEEECC---------------CCEEEEEEEEEEEEET
T ss_pred Ceeeeeccccc-cC-CCceEEEEECCHHHHHHHHHhcCCCCEEEEEEEEEEec-cCCCC-ceEEEEEEEEEEEEEEEecC
Confidence 9999999 7 77 88999999999999999999999999999999999998 66777 88999999999999999999
Q ss_pred CCCeEEEEEEEcc
Q psy14161 78 QACVLRLKGNCGN 90 (91)
Q Consensus 78 ~~~~Lri~G~i~~ 90 (91)
++++|||+|+|+.
T Consensus 77 ~~~~lri~G~i~~ 89 (386)
T 2vgn_A 77 KDEYLKYKGVTVT 89 (386)
T ss_dssp TTTEEEEEEEECC
T ss_pred CCCEEEEEEEEEc
Confidence 9999999999974
No 7
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=99.96 E-value=3.8e-30 Score=198.18 Aligned_cols=82 Identities=26% Similarity=0.408 Sum_probs=69.7
Q ss_pred CeeEeecccCCCCCeeEEEeeCCCchhhhhhhhhcCCCEEEEEeeEEEeeecCCCCccceEEEEEEEEEEEEEeecCCCC
Q psy14161 1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQAC 80 (91)
Q Consensus 1 MKi~~~~~~~k~~~g~i~l~pE~~dDlW~lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~iefd~~~~ 80 (91)
|||++++. ++|+|+|+||++||||||||||++||.|+|+|+|+|+. |+ +++|++++|+|+||++||||+++
T Consensus 21 Mki~~~~~----~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T~Rkv~~----~~-~~~r~~~~L~i~Ve~ief~~~~~ 91 (364)
T 3obw_A 21 MRILEFDE----KRQAVKLHIESEDDLWLLHLILEKDDKVVAKTTRDVGL----GK-ESRRIPMTIILKVDYTEFQEFTN 91 (364)
T ss_dssp ------CC----CCCCEEEECCSHHHHHHHHHHCCTTCEEEEEEEEECC--------CCCEEEEEEEEEEEEEEEETTTT
T ss_pred cEEEEecC----CCceEEEEeCCHHHHHHHHHhccCCCEEEEEEEEEEEc----CC-ceEEEEEEEEEEEEEEEecCCCC
Confidence 99999886 89999999999999999999999999999999999974 22 56999999999999999999999
Q ss_pred eEEEEEEEccC
Q psy14161 81 VLRLKGNCGNC 91 (91)
Q Consensus 81 ~Lri~G~i~~~ 91 (91)
+|||+|+|+.+
T Consensus 92 ~Lri~G~iv~~ 102 (364)
T 3obw_A 92 RLRIHGIIEDA 102 (364)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEEEEEEEec
Confidence 99999999864
No 8
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=86.35 E-value=0.0004 Score=53.87 Aligned_cols=60 Identities=10% Similarity=0.024 Sum_probs=45.5
Q ss_pred hhhhhhcCCCEEEEEeeEEEeee--cCCCCccceEEEEEEEEEEEEEee-----cCCCCeEEEEEEE
Q psy14161 29 HAYNLITEGDSVRASTIRKVQSE--SNTGSSTSSRVRTMLTISVESIDF-----DTQACVLRLKGNC 88 (91)
Q Consensus 29 ~lynli~~GD~V~a~T~Rkv~~~--~~~g~~~~~r~~~~L~i~Ve~ief-----d~~~~~Lri~G~i 88 (91)
.+|++|.|||.|.+.|.|++... +++...+.+|..+.++|.++..+| .|..+.+.+.|.+
T Consensus 34 ~isl~I~pgd~v~~~t~rl~~e~~~~~~iks~~~r~~v~~ai~~~~~~l~~~~~~~~~Glvvf~g~~ 100 (437)
T 1dt9_A 34 MISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTI 100 (437)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHHHTTCSSCCTTCEEEEEEEE
T ss_pred EEEEEECCCCchhHHHHHHHHHhccccccccchHHHhHHHHHHHHHHHhccCCCCCCCeEEEEeCcc
Confidence 36889999999999999987542 122223678999999999999999 5666777777764
No 9
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=42.70 E-value=29 Score=19.98 Aligned_cols=33 Identities=24% Similarity=0.549 Sum_probs=20.3
Q ss_pred CCCCCeeEEEeeCCC-chhh-hhhhh-------hcCCCEEEEEe
Q psy14161 10 DKDKSGVVALVPEES-EDMW-HAYNL-------ITEGDSVRAST 44 (91)
Q Consensus 10 ~k~~~g~i~l~pE~~-dDlW-~lynl-------i~~GD~V~a~T 44 (91)
...+-|+| .|++. +|+| |...| +.+||.|....
T Consensus 15 ~~kGfGFI--~~~~g~~dvFvH~s~i~~~g~~~l~~G~~V~f~~ 56 (71)
T 3i2z_B 15 ESKGFGFI--TPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEI 56 (71)
T ss_dssp TTTTEEEE--EETTCCCCEEEEGGGBCCSSCCCCCTTCEEEEEE
T ss_pred CCCCcEEE--ecCCCCccEEEEhHHcccccCcCCCCCCEEEEEE
Confidence 34466887 46654 6776 55544 45777777653
No 10
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=31.78 E-value=54 Score=20.15 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=23.6
Q ss_pred CCCeeEEEeeCCCchhhhhhhhhcCCCEEEEEeeE
Q psy14161 12 DKSGVVALVPEESEDMWHAYNLITEGDSVRASTIR 46 (91)
Q Consensus 12 ~~~g~i~l~pE~~dDlW~lynli~~GD~V~a~T~R 46 (91)
|.+|.|.+..-+ |..=.+|.+|++|+.++-...+
T Consensus 48 De~G~I~at~~~-~~~~~f~~~l~eG~vy~Is~~~ 81 (114)
T 1ynx_A 48 DTSGEIRATAFN-DFATKFNEILQEGKVYYVSKAK 81 (114)
T ss_dssp ETTEEEEEEECH-HHHHHHHHHSCSSSEEEEESCE
T ss_pred CCCCeEEEEECH-HHHHHHHhhcccCcEEEECCcE
Confidence 345666666543 3344579999999999988654
No 11
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A
Probab=31.67 E-value=1.3e+02 Score=22.08 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=18.6
Q ss_pred eeCCCchhhhhhhhhcCCCEEEEEeeEEEeeec
Q psy14161 20 VPEESEDMWHAYNLITEGDSVRASTIRKVQSES 52 (91)
Q Consensus 20 ~pE~~dDlW~lynli~~GD~V~a~T~Rkv~~~~ 52 (91)
..++-+..++ | .+ ..+++.++|.+...+
T Consensus 184 ~i~dy~E~Y~-~---~~-g~l~s~str~~~~~~ 211 (285)
T 1gl4_A 184 HIEPYTELYH-Y---SS-SVITSSSTREYTVME 211 (285)
T ss_dssp ECCCEEEEEE-E---ET-TEEEEEEEEEEEEEC
T ss_pred ecCCcceEEE-E---cC-CEEEEEeeeeEEecc
Confidence 3345555554 2 44 699999999887754
No 12
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=29.47 E-value=13 Score=25.39 Aligned_cols=13 Identities=23% Similarity=0.480 Sum_probs=11.1
Q ss_pred EeeCCCchhhhhh
Q psy14161 19 LVPEESEDMWHAY 31 (91)
Q Consensus 19 l~pE~~dDlW~ly 31 (91)
+.||-||||++|.
T Consensus 82 lapeiPEDL~~Li 94 (153)
T 2xzm_O 82 CAPQLPEDLYFLI 94 (153)
T ss_dssp CCCSSCHHHHHHH
T ss_pred CCCCCcHHHHHHH
Confidence 5799999998875
No 13
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=29.37 E-value=13 Score=25.32 Aligned_cols=13 Identities=38% Similarity=0.618 Sum_probs=11.0
Q ss_pred EeeCCCchhhhhh
Q psy14161 19 LVPEESEDMWHAY 31 (91)
Q Consensus 19 l~pE~~dDlW~ly 31 (91)
+.||-||||++|.
T Consensus 80 lapeiPEDL~~Li 92 (151)
T 3u5c_N 80 LAPEIPEDLYYLI 92 (151)
T ss_dssp CCCSSCHHHHHHH
T ss_pred CCCCCcHHHHHHH
Confidence 5799999998875
No 14
>3qr7_A GPV, baseplate assembly protein V; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, tail spike, viral protein; 0.94A {Enterobacteria phage P2}
Probab=27.33 E-value=29 Score=21.84 Aligned_cols=16 Identities=19% Similarity=0.534 Sum_probs=14.3
Q ss_pred EEeecCCCCeEEEEEE
Q psy14161 72 SIDFDTQACVLRLKGN 87 (91)
Q Consensus 72 ~iefd~~~~~Lri~G~ 87 (91)
.++||+.+..|+|+|.
T Consensus 13 ~~~Yd~~s~~l~i~gi 28 (115)
T 3qr7_A 13 VIEYEPETSALTVSGI 28 (115)
T ss_dssp EEEEETTTTEEEEESC
T ss_pred EEEeCccCCeEEEecc
Confidence 5899999999999875
No 15
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=25.52 E-value=79 Score=19.25 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=17.0
Q ss_pred CCCeeEEEeeCCCchhhhhhhhhcCCCEEEEEee
Q psy14161 12 DKSGVVALVPEESEDMWHAYNLITEGDSVRASTI 45 (91)
Q Consensus 12 ~~~g~i~l~pE~~dDlW~lynli~~GD~V~a~T~ 45 (91)
|..|.|.+..=++ . +++||.|+....
T Consensus 46 DeTG~I~~tlW~~------~--l~~Gdvv~i~ng 71 (106)
T 2k75_A 46 DDTARIRISSFGK------Q--LQDSDVVRIDNA 71 (106)
T ss_dssp CSSCEEEEEEESS------C--CCTTEEEEEEEE
T ss_pred cCCCeEEEEEEcC------c--cCCCCEEEEEee
Confidence 3456666554333 2 999999998743
No 16
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=23.27 E-value=41 Score=23.27 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=14.3
Q ss_pred hhhhhhcCCCEEEEEee
Q psy14161 29 HAYNLITEGDSVRASTI 45 (91)
Q Consensus 29 ~lynli~~GD~V~a~T~ 45 (91)
.+++.+++||+|+|.-.
T Consensus 131 ~~~~~l~~GD~V~akVi 147 (209)
T 2nn6_I 131 EIYKSFRPGDIVLAKVI 147 (209)
T ss_dssp CGGGTCCSSSEEEEEEE
T ss_pred chhhhcCCCCEEEEEEE
Confidence 57888999999999843
No 17
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=21.64 E-value=1.1e+02 Score=16.74 Aligned_cols=48 Identities=19% Similarity=0.095 Sum_probs=27.1
Q ss_pred hhhcCCCEEEEEeeEEEeeecCCCCccceEEEEEEEEEEEEEeecCCCCeEEEEEEEcc
Q psy14161 32 NLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRLKGNCGN 90 (91)
Q Consensus 32 nli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~iefd~~~~~Lri~G~i~~ 90 (91)
..+..|. ......|-..+ .| +.+-+.....+ + ++..+..+++.|...|
T Consensus 58 ~~~~~~~-~~~~e~r~~~~---dG----~~~w~~~~~~~--~-~d~~G~~~~~~G~~~D 105 (115)
T 3h9w_A 58 KQSECGV-DHEADYRALHR---DG----HYVWIRDVVHV--V-RDDSGEVEALIGFMFD 105 (115)
T ss_dssp HHHHTTC-CEEEEEEEECT---TS----CEEEEEEEEEE--E-ECTTSCEEEEEEEEEE
T ss_pred HHHhcCC-cccEEEEEEcC---CC----CEEEEEEEEEE--E-ECCCCCEEEEEEEEec
Confidence 4455555 33344554432 22 23344443333 3 7888899999998876
No 18
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=21.53 E-value=46 Score=22.28 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=14.7
Q ss_pred hhhhhhcCCCEEEEEee
Q psy14161 29 HAYNLITEGDSVRASTI 45 (91)
Q Consensus 29 ~lynli~~GD~V~a~T~ 45 (91)
.+++.+++||.|+|.-.
T Consensus 107 ~~~~~~~~GD~V~akVi 123 (179)
T 3m7n_A 107 EISEAVGYLDILKARVI 123 (179)
T ss_dssp SGGGTCCTTCEEEEEEE
T ss_pred CHhhcCCCCCEEEEEEE
Confidence 67889999999999854
No 19
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=20.66 E-value=77 Score=20.37 Aligned_cols=54 Identities=19% Similarity=0.382 Sum_probs=35.9
Q ss_pred CCCeeEEEeeC------CCchhhhhhhhhc-----CCCEEEEEeeEEEeeecCCCCccceEEEEEEEEEEEEEeecCC
Q psy14161 12 DKSGVVALVPE------ESEDMWHAYNLIT-----EGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQ 78 (91)
Q Consensus 12 ~~~g~i~l~pE------~~dDlW~lynli~-----~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~iefd~~ 78 (91)
+|-|++. ++ .+||+|.=-+.|+ .||.|.+... . +..+|| ..--++|++|++.+.
T Consensus 60 dG~GFlr--~~~~~y~~~~~DiyVs~~~irrf~lr~GD~V~g~vr-~--------~~~~ek--~~~l~~v~~vng~~p 124 (130)
T 1a62_A 60 DGFGFLR--SADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR-P--------PKEGER--YFALLKVNEVNFDKP 124 (130)
T ss_dssp TSCEEEE--CGGGTTCCCTTCEEECHHHHHHTTCCTTCEEEEEEE-C--------CCTTCC--SEEEEEEEEETTBCC
T ss_pred CCeEEEe--cCCcCCCCCCCCEEECHHHHhHhCCCCCCEEEEEEe-C--------CCCCCc--ccceeEEEeECCCCH
Confidence 4567764 44 5899998777776 9999999843 1 112233 445568888887653
No 20
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=20.28 E-value=93 Score=18.03 Aligned_cols=33 Identities=15% Similarity=0.341 Sum_probs=21.2
Q ss_pred CCCCCeeEEEeeCCCchhhhhhhhh---------cCCCEEEEEe
Q psy14161 10 DKDKSGVVALVPEESEDMWHAYNLI---------TEGDSVRAST 44 (91)
Q Consensus 10 ~k~~~g~i~l~pE~~dDlW~lynli---------~~GD~V~a~T 44 (91)
...+-|+| .|++-+|++.=++-| .+||.|....
T Consensus 10 ~~KGfGFI--~~~dG~DvFvH~s~i~~~~g~~~l~~G~~V~F~~ 51 (74)
T 2kcm_A 10 AAKKYGFI--QGDDGESYFLHFSELLDKKDEGKLVKGSMVHFDP 51 (74)
T ss_dssp TTTTEEEE--EETTSCEECCCGGGSSCSGGGTTCCTTSEEEEEE
T ss_pred CCCCEEEE--ecCCCceEEEEhhhcccCCCCCCCCCCCEEEEEE
Confidence 44466888 577767776554444 4788887664
No 21
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=20.14 E-value=0.3 Score=38.12 Aligned_cols=72 Identities=24% Similarity=0.243 Sum_probs=40.5
Q ss_pred CCCCe--eEEEeeCCCchhhhhhhhhcCCCEEEEEeeE-EEeeecCCCCccceEEEEEEEEEEEEEeecCCCCeEEEEEE
Q psy14161 11 KDKSG--VVALVPEESEDMWHAYNLITEGDSVRASTIR-KVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRLKGN 87 (91)
Q Consensus 11 k~~~g--~i~l~pE~~dDlW~lynli~~GD~V~a~T~R-kv~~~~~~g~~~~~r~~~~L~i~Ve~iefd~~~~~Lri~G~ 87 (91)
..++| -|+|..--.+.+--.-+.+.. ..=+|.|.| |++..+.+|+-.+.+.+++|..+| |.++.++++|.
T Consensus 32 ~~g~gt~lisl~ipp~~~i~~v~~~l~~-e~~~asnIksk~~r~~v~~ai~s~~~rlkl~~~v------p~~g~v~~~G~ 104 (441)
T 3e20_C 32 CHGNGTSMITLIIPPGEQISRYSNMLAE-EYGTASNIKSRVNRLSVLSAITSTRERLKLYNKV------PDNGLVIYCGE 104 (441)
T ss_dssp CCCSSSCEEEEECCTTCCHHHHHHHHHH-HHHHTTCCCCHHHHHHHHHHHHHHHHHHTTCSSC------TTSCCEEEEEE
T ss_pred ccCCCceEEEEEeCCCCcHHHHHHHHHH-HHhhhhhhhhhhhccchhhHHHHHHHHHhhhccC------CCCCEEEEece
Confidence 33454 366655444444333333321 111344445 455545455445666667777776 89999999999
Q ss_pred Ec
Q psy14161 88 CG 89 (91)
Q Consensus 88 i~ 89 (91)
|+
T Consensus 105 ~~ 106 (441)
T 3e20_C 105 VI 106 (441)
T ss_dssp EC
T ss_pred ee
Confidence 75
No 22
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=20.09 E-value=26 Score=22.01 Aligned_cols=17 Identities=35% Similarity=0.630 Sum_probs=13.4
Q ss_pred hhhhcCCCEEEEEeeEE
Q psy14161 31 YNLITEGDSVRASTIRK 47 (91)
Q Consensus 31 ynli~~GD~V~a~T~Rk 47 (91)
||=+++||.+.|.....
T Consensus 79 ~~dik~GD~Ie~ye~~e 95 (99)
T 1d1n_A 79 FNDIKEGDVIEAYVMQE 95 (99)
T ss_dssp CSSCSSCSEEEEECCSC
T ss_pred cCCCCCCCEEEEEEEEE
Confidence 56679999999996543
Done!