RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14161
         (91 letters)



>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota
          {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 126

 Score =  100 bits (252), Expect = 6e-30
 Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          M+++ +++    K+    +  E  +D+W+  N+++EGD V A T R+V+  ++   S   
Sbjct: 1  MRILEEDL----KNSTYRIRIESLDDLWYLRNILSEGDEVSAITFRRVEESADVQRSRER 56

Query: 61 RVRTM-LTISVESIDFDTQACVLRLKG 86
              + + + VE I+F      LR+ G
Sbjct: 57 ERIPITIRLKVEKIEFQDFDNRLRILG 83


>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae
          [TaxId: 4932]}
          Length = 135

 Score = 99.1 bits (247), Expect = 3e-29
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 1  MKLVHKNIN-DKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTS 59
          MK++    +       V+ L+PE+ ED++  Y ++ + D +        + +        
Sbjct: 1  MKVISLKKDSFNKGGAVITLLPEDKEDLFTVYQIVDKDDELIFKKKFTSKLDE--AGKKK 58

Query: 60 SRVRTMLTISVESIDFDTQACVLRLKG 86
          S     L I V S DFD +   L+ KG
Sbjct: 59 STDLVKLKIKVISEDFDMKDEYLKYKG 85


>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 283

 Score = 23.6 bits (51), Expect = 4.8
 Identities = 5/24 (20%), Positives = 12/24 (50%)

Query: 1   MKLVHKNINDKDKSGVVALVPEES 24
            +  H+ +     +G+ A+  +ES
Sbjct: 219 TRACHQAMMVDQANGIEAVWHDES 242


>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice
          (Oryza sativa) [TaxId: 4530]}
          Length = 73

 Score = 22.8 bits (49), Expect = 5.3
 Identities = 3/23 (13%), Positives = 7/23 (30%)

Query: 69 SVESIDFDTQACVLRLKGNCGNC 91
           ++ +        +RL G     
Sbjct: 26 GLQFLMIKGPIVKVRLTGPAAVV 48


>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog
          SE0630 {Staphylococcus epidermidis [TaxId: 1282]}
          Length = 88

 Score = 22.5 bits (48), Expect = 8.1
 Identities = 7/23 (30%), Positives = 10/23 (43%)

Query: 69 SVESIDFDTQACVLRLKGNCGNC 91
              +D +     L+L G CG C
Sbjct: 29 DCTLVDVEDGIVKLQLHGACGTC 51


>d1chka_ d.2.1.7 (A:) Endochitosanase {Streptomyces sp., strain
          N174 [TaxId: 1931]}
          Length = 238

 Score = 22.9 bits (49), Expect = 8.3
 Identities = 10/38 (26%), Positives = 12/38 (31%), Gaps = 1/38 (2%)

Query: 20 VPEESE-DMWHAYNLITEGDSVRASTIRKVQSESNTGS 56
            E S  D    Y  I +    R  T   +   S TG 
Sbjct: 20 SAENSSLDWKAQYKYIEDIGDGRGYTGGIIGFCSGTGD 57


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.126    0.353 

Gapped
Lambda     K      H
   0.267   0.0638    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 288,442
Number of extensions: 9318
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 8
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.1 bits)