BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14162
(90 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P48612|PELO_DROME Protein pelota OS=Drosophila melanogaster GN=pelo PE=2 SV=2
Length = 395
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 47/52 (90%)
Query: 14 EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
+G V+QHEK L +FY+ VMQ ILRHVNFD+VKCVL+ASPGFV+D+F++YMFQ
Sbjct: 172 KGSVQQHEKGLAKFYEQVMQSILRHVNFDVVKCVLIASPGFVRDQFYDYMFQ 223
>sp|Q7ZWC4|PELO_DANRE Protein pelota homolog OS=Danio rerio GN=pelo PE=2 SV=1
Length = 385
Score = 86.7 bits (213), Expect = 3e-17, Method: Composition-based stats.
Identities = 37/60 (61%), Positives = 46/60 (76%)
Query: 14 EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAK 73
+G QH+KAL RFY+ VMQGILRH NFD+VKC+L+ASPGFVKD+F Y+F+ Q K
Sbjct: 172 KGSCTQHDKALERFYEAVMQGILRHFNFDVVKCILVASPGFVKDQFISYLFKEAVRQDCK 231
>sp|Q5U567|PELO_XENLA Protein pelota homolog OS=Xenopus laevis GN=pelo PE=2 SV=1
Length = 383
Score = 81.3 bits (199), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/59 (59%), Positives = 46/59 (77%)
Query: 15 GDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAK 73
G+ QHEKAL +FY+ VMQGILRH+NFD+VK VL+ASPGFV+++F E++F Q K
Sbjct: 173 GNCTQHEKALEKFYEQVMQGILRHINFDVVKVVLVASPGFVREQFCEFLFLRAVKQDLK 231
>sp|Q5ZK01|PELO_CHICK Protein pelota homolog OS=Gallus gallus GN=PELO PE=2 SV=1
Length = 385
Score = 79.0 bits (193), Expect = 8e-15, Method: Composition-based stats.
Identities = 31/52 (59%), Positives = 45/52 (86%)
Query: 14 EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
+G+ QH++AL RFY+ V+Q I RH+NF++VKCVL+ASPGFV+++F +YMFQ
Sbjct: 172 KGNCSQHDRALERFYEQVVQAIQRHINFEVVKCVLVASPGFVREQFCDYMFQ 223
>sp|Q80X73|PELO_MOUSE Protein pelota homolog OS=Mus musculus GN=Pelo PE=2 SV=3
Length = 385
Score = 79.0 bits (193), Expect = 8e-15, Method: Composition-based stats.
Identities = 31/52 (59%), Positives = 45/52 (86%)
Query: 14 EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
+G+ QH++AL RFY+ V+Q I RH+NF++VKCVL+ASPGFV+++F +YMFQ
Sbjct: 172 KGNCSQHDRALERFYEQVVQAIQRHINFEVVKCVLVASPGFVREQFCDYMFQ 223
>sp|Q5XIP1|PELO_RAT Protein pelota homolog OS=Rattus norvegicus GN=Pelo PE=2 SV=1
Length = 385
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 45/52 (86%)
Query: 14 EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
+G+ QH++AL RFY+ V+Q I RH+NF++VKC+L+ASPGFV+++F +YMFQ
Sbjct: 172 KGNCSQHDRALERFYEQVVQAIQRHINFEVVKCILVASPGFVREQFCDYMFQ 223
>sp|Q58DV0|PELO_BOVIN Protein pelota homolog OS=Bos taurus GN=PELO PE=2 SV=2
Length = 385
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/52 (59%), Positives = 45/52 (86%)
Query: 14 EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
+G+ QH++AL RFY+ V+Q I RH++FD+VKCVL+ASPGFV+++F +YMFQ
Sbjct: 172 KGNCSQHDRALERFYEQVVQAIQRHIHFDVVKCVLVASPGFVREQFCDYMFQ 223
>sp|Q5RCE3|PELO_PONAB Protein pelota homolog OS=Pongo abelii GN=PELO PE=2 SV=1
Length = 385
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 45/52 (86%)
Query: 14 EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
+G+ QH++AL RFY+ V+Q I RH++FD+VKC+L+ASPGFV+++F +YMFQ
Sbjct: 172 KGNCSQHDRALERFYEQVVQAIQRHIHFDVVKCILVASPGFVREQFCDYMFQ 223
>sp|Q9BRX2|PELO_HUMAN Protein pelota homolog OS=Homo sapiens GN=PELO PE=1 SV=2
Length = 385
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 29/52 (55%), Positives = 45/52 (86%)
Query: 14 EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
+G+ QH++AL RFY+ V+Q I RH++FD+VKC+L+ASPGFV+++F +Y+FQ
Sbjct: 172 KGNCSQHDRALERFYEQVVQAIQRHIHFDVVKCILVASPGFVREQFCDYLFQ 223
>sp|P50444|YNU6_CAEEL Uncharacterized protein R74.6 OS=Caenorhabditis elegans GN=R74.6
PE=3 SV=1
Length = 381
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 7/65 (10%)
Query: 14 EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMF-------QV 66
+G QHEK L +FY+ V +RHVN +VKCV++AS GFVKD F +++ +
Sbjct: 172 KGFTSQHEKGLEKFYEAVSTAFMRHVNLQVVKCVIVASRGFVKDAFMQHLIAHADANGKK 231
Query: 67 FTSQQ 71
FT++Q
Sbjct: 232 FTTEQ 236
>sp|Q9USL5|DOM34_SCHPO Protein dom34 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=dom34 PE=1 SV=1
Length = 390
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 15 GDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAKS 74
GD ++K L +FYD+V Q I +FD +K V+LASPGFV ++Y+F + K
Sbjct: 173 GDSSAYQKGLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYIFSMAVKLDLK- 231
Query: 75 PSVQLI-SKFQYCFFHS 90
Q++ SK ++ HS
Sbjct: 232 ---QIVKSKNKFVILHS 245
>sp|A5UKW7|PELO_METS3 Protein pelota homolog OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=pelA PE=3 SV=1
Length = 353
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 38/60 (63%), Gaps = 6/60 (10%)
Query: 4 RGAEDGKLMWEGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYM 63
+G+ GK + + K KA+ +FY+ V++ + + F ++ +++A PGFVK+ F++Y+
Sbjct: 164 KGSVSGKRIVD---KNRSKAIAQFYEKVIESVNK---FHDIQNIVVAGPGFVKNDFYDYI 217
>sp|P33309|DOM34_YEAST Protein DOM34 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=DOM34 PE=1 SV=2
Length = 386
Score = 36.2 bits (82), Expect = 0.062, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 16 DVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGF----VKDKFFEY 62
DV + ++ +FY + + + +NFD +K ++L SPGF + DK F+Y
Sbjct: 180 DVLKFDEKTEKFYKAIYSAMKKDLNFDKLKTIILCSPGFYAKILMDKIFQY 230
>sp|O27679|PELO_METTH Protein pelota homolog OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=pelA PE=3 SV=2
Length = 353
Score = 32.3 bits (72), Expect = 0.93, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 17 VKQHEKALVR--FYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAKS 74
++Q ++ +R FY+++++ + ++ + + + ++A PGF K F++Y+ + + K+
Sbjct: 172 IQQRDRGKLRREFYESIVESLQKYGDLETI---IIAGPGFYKSDFYDYLMERYPEIAKKA 228
>sp|B6YUV3|PELO_THEON Protein pelota homolog OS=Thermococcus onnurineus (strain NA1)
GN=pelA PE=3 SV=1
Length = 357
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 9 GKLMWEGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYM 63
G + D + EK RF+ +V + + +N + V+ ++A PGFVK+ F++++
Sbjct: 167 GGKRYNTDREAEEK---RFFHDVAKTMEEIMNREKVEKAIVAGPGFVKEDFYKFL 218
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.141 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,481,440
Number of Sequences: 539616
Number of extensions: 1080932
Number of successful extensions: 2640
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2626
Number of HSP's gapped (non-prelim): 15
length of query: 90
length of database: 191,569,459
effective HSP length: 60
effective length of query: 30
effective length of database: 159,192,499
effective search space: 4775774970
effective search space used: 4775774970
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)