Query psy14162
Match_columns 90
No_of_seqs 103 out of 266
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 21:03:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14162.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14162hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mca_B Protein DOM34, elongati 99.8 1.2E-18 4.2E-23 137.0 7.3 81 9-90 166-247 (390)
2 2vgn_A DOM34; translation term 99.7 6.1E-17 2.1E-21 127.0 4.8 80 10-90 172-253 (386)
3 3j15_A Protein pelota; ribosom 99.5 1E-14 3.5E-19 113.4 3.1 72 7-88 163-234 (357)
4 3obw_A Protein pelota homolog; 99.3 2.1E-12 7E-17 101.0 5.6 46 21-66 183-228 (364)
5 3agj_B Protein pelota homolog; 99.3 4.1E-12 1.4E-16 98.5 6.1 61 8-70 159-219 (358)
6 3oby_A Protein pelota homolog; 99.2 6.5E-12 2.2E-16 97.9 3.4 52 25-89 170-221 (352)
7 2qi2_A Pelota, cell division p 99.0 1.4E-10 4.7E-15 90.0 3.2 51 10-68 163-213 (347)
8 3e20_C Eukaryotic peptide chai 98.7 1.4E-09 4.7E-14 86.8 0.0 43 20-62 199-244 (441)
9 3agk_A Peptide chain release f 98.7 4.4E-09 1.5E-13 81.2 2.7 47 20-66 191-243 (373)
10 1dt9_A ERF1, protein (eukaryot 98.7 1.7E-09 5.8E-14 85.3 -0.6 44 21-64 195-241 (437)
11 3gdz_A Arginyl-tRNA synthetase 87.9 0.48 1.7E-05 30.6 3.4 27 29-55 59-86 (109)
12 3tvt_A Disks large 1 tumor sup 76.2 1.8 6.3E-05 32.2 3.0 25 43-69 99-123 (292)
13 1kjw_A Postsynaptic density pr 70.6 3.1 0.0001 30.8 3.0 23 44-68 105-127 (295)
14 3js6_A Uncharacterized PARM pr 55.3 18 0.00063 27.0 4.8 52 19-70 265-319 (355)
15 3kfv_A Tight junction protein 52.5 12 0.0004 28.4 3.3 26 42-69 143-168 (308)
16 4apw_A ALP12; actin-like prote 47.2 80 0.0027 23.0 7.2 50 17-68 251-301 (329)
17 1ex7_A Guanylate kinase; subst 43.8 19 0.00065 24.7 3.1 24 45-68 2-26 (186)
18 1oks_A RNA polymerase alpha su 41.7 24 0.00081 20.8 2.8 18 21-38 34-51 (56)
19 3cf4_G Acetyl-COA decarboxylas 39.1 42 0.0014 22.3 4.2 41 29-74 25-65 (170)
20 3ado_A Lambda-crystallin; L-gu 38.6 27 0.00092 26.2 3.4 25 45-69 182-208 (319)
21 1byr_A Protein (endonuclease); 38.5 57 0.0019 20.3 4.6 35 27-66 15-49 (155)
22 2l09_A ASR4154 protein; proto- 37.5 21 0.00072 21.3 2.2 24 52-75 17-40 (62)
23 2xkx_A Disks large homolog 4; 35.9 25 0.00087 28.8 3.1 24 43-68 530-553 (721)
24 2gup_A ROK family protein; sug 32.8 54 0.0018 22.9 4.1 46 22-67 206-251 (292)
25 3isa_A Putative enoyl-COA hydr 30.9 34 0.0012 24.2 2.8 25 28-53 36-60 (254)
26 3j21_Z 50S ribosomal protein L 30.8 93 0.0032 18.9 4.5 36 28-69 20-55 (99)
27 2kru_A Light-independent proto 29.3 21 0.00072 21.4 1.2 24 52-75 18-41 (63)
28 3hp0_A Putative polyketide bio 29.0 47 0.0016 23.8 3.3 12 42-53 49-60 (267)
29 1f0k_A MURG, UDP-N-acetylgluco 27.7 1.3E+02 0.0043 20.8 5.3 34 29-65 200-233 (364)
30 2yhw_A Bifunctional UDP-N-acet 27.0 1.2E+02 0.004 21.8 5.1 47 21-69 262-308 (343)
31 3iek_A Ribonuclease TTHA0252; 26.8 25 0.00086 26.8 1.5 32 44-75 305-337 (431)
32 3h1q_A Ethanolamine utilizatio 26.7 1.3E+02 0.0043 20.5 5.1 48 19-66 201-249 (272)
33 2e2o_A Hexokinase; acetate and 26.2 83 0.0028 22.0 4.1 48 22-69 218-265 (299)
34 1fyx_A TOLL-like receptor 2; b 25.9 1.2E+02 0.0042 19.6 4.7 31 27-62 50-80 (149)
35 3hin_A Putative 3-hydroxybutyr 25.8 37 0.0013 24.6 2.2 25 27-53 44-68 (275)
36 1w41_A 50S ribosomal protein L 25.3 1.2E+02 0.0041 18.4 4.4 37 29-71 22-58 (101)
37 3hcn_A Ferrochelatase, mitocho 25.0 40 0.0014 25.9 2.3 17 43-59 262-278 (359)
38 3bos_A Putative DNA replicatio 25.0 1.3E+02 0.0045 19.3 4.7 28 43-70 51-79 (242)
39 3cpq_A 50S ribosomal protein L 24.2 1.2E+02 0.0041 18.9 4.2 37 28-70 26-62 (110)
40 2chg_A Replication factor C sm 23.7 1.3E+02 0.0043 18.8 4.3 22 46-67 40-62 (226)
41 3r8e_A Hypothetical sugar kina 23.4 1.1E+02 0.0039 21.8 4.5 50 21-70 238-288 (321)
42 3l3s_A Enoyl-COA hydratase/iso 21.8 94 0.0032 22.0 3.7 26 28-53 35-60 (263)
43 3djc_A Type III pantothenate k 21.7 1.5E+02 0.0052 21.4 4.9 28 39-66 53-80 (266)
44 3epq_A Putative fructokinase; 21.6 1.1E+02 0.0038 21.9 4.1 48 22-69 203-250 (302)
45 3sll_A Probable enoyl-COA hydr 21.4 78 0.0027 22.9 3.3 27 27-53 52-78 (290)
46 3tlf_A Enoyl-COA hydratase/iso 21.0 70 0.0024 22.7 2.9 12 42-53 54-65 (274)
47 4htl_A Beta-glucoside kinase; 20.9 86 0.0029 22.2 3.4 49 21-69 215-263 (297)
48 4f47_A Enoyl-COA hydratase ECH 20.9 70 0.0024 22.8 2.9 29 28-56 49-79 (278)
49 1w99_A Pesticidial crystal pro 20.7 31 0.0011 28.1 1.0 15 46-60 412-426 (558)
50 3gow_A PAAG, probable enoyl-CO 20.7 73 0.0025 22.4 2.9 12 42-53 43-54 (254)
51 3qre_A Enoyl-COA hydratase, EC 20.5 71 0.0024 23.3 2.9 26 28-53 59-84 (298)
52 3njd_A Enoyl-COA hydratase; ss 20.5 71 0.0024 23.6 2.9 27 27-53 63-89 (333)
53 3i47_A Enoyl COA hydratase/iso 20.2 77 0.0026 22.6 3.0 12 42-53 47-58 (268)
54 1lbq_A Ferrochelatase; rossman 20.1 46 0.0016 25.4 1.8 17 43-59 266-282 (362)
55 3te6_A Regulatory protein SIR3 20.1 1.4E+02 0.0048 22.1 4.5 41 29-69 30-71 (318)
No 1
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.75 E-value=1.2e-18 Score=137.02 Aligned_cols=81 Identities=31% Similarity=0.450 Sum_probs=72.5
Q ss_pred CCccccc-chhHHHHHHHHHHHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHHhcccCCCCcchhccCceEEee
Q psy14162 9 GKLMWEG-DVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAKSPSVQLISKFQYCF 87 (90)
Q Consensus 9 ~~~~r~~-~~s~~dKal~kFf~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~r~~~k~l~~~~kskfv~~~ 87 (90)
.-|+|++ +++++++++++||++|++++.+++||+.+++||||||||+|++|++||..++.+.+++.|+ .+++||++||
T Consensus 166 ~iPkK~~~gg~~~~~~~~~F~~~V~e~l~~~~d~~~v~~iIlaGPgf~K~~f~~~L~~~~~~~~~k~l~-~~~~k~~vv~ 244 (390)
T 3mca_B 166 VIPRKRRGDSSAYQKGLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYIFSMAVKLDLKQIV-KSKNKFVILH 244 (390)
T ss_dssp CCCCCBTTBCHHHHHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESSSHHHHHHHHHHHHHHHTTCHHHH-HHGGGEEEEE
T ss_pred eCCCcCCCCchhHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECChHHHHHHHHHHHHHHhhccchhhh-hhcCeEEEEE
Confidence 3466543 3348999999999999999999999999999999999999999999999999999999997 8999999998
Q ss_pred ecC
Q psy14162 88 FHS 90 (90)
Q Consensus 88 ~~~ 90 (90)
+.+
T Consensus 245 ~s~ 247 (390)
T 3mca_B 245 SST 247 (390)
T ss_dssp CSC
T ss_pred cCC
Confidence 753
No 2
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=99.65 E-value=6.1e-17 Score=126.96 Aligned_cols=80 Identities=20% Similarity=0.349 Sum_probs=68.3
Q ss_pred Cccccc-c-hhHHHHHHHHHHHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHHhcccCCCCcchhccCceEEee
Q psy14162 10 KLMWEG-D-VKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAKSPSVQLISKFQYCF 87 (90)
Q Consensus 10 ~~~r~~-~-~s~~dKal~kFf~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~r~~~k~l~~~~kskfv~~~ 87 (90)
-|+|++ + ++++++++++||++|++++.+++|++.++|||||||||+|++|++|+..++++.+++.|+ .+++||+++|
T Consensus 172 iP~K~~~g~~s~~~~~~~~F~~~V~~~l~~~~~~~~v~~lIlaGPg~~k~~f~~~l~~~~~~~~~~~~~-~~~~ki~vv~ 250 (386)
T 2vgn_A 172 MPKKKRTTDVLKFDEKTEKFYKAIYSAMKKDLNFDKLKTIILCSPGFYAKILMDKIFQYAEEEHNKKIL-DNKGMFFIAH 250 (386)
T ss_dssp --------CCSSCCHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESTTHHHHHHHHHHHHHHHTTCHHHH-TTGGGEEEEE
T ss_pred CCCCccCCCcchHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECCHHHHHHHHHHHHHHhhhhccchhh-hccCcEEEEE
Confidence 455543 2 344899999999999999999999999999999999999999999999999999999997 9999999998
Q ss_pred ecC
Q psy14162 88 FHS 90 (90)
Q Consensus 88 ~~~ 90 (90)
+.+
T Consensus 251 ~s~ 253 (386)
T 2vgn_A 251 CST 253 (386)
T ss_dssp CSC
T ss_pred CCC
Confidence 753
No 3
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=99.48 E-value=1e-14 Score=113.38 Aligned_cols=72 Identities=18% Similarity=0.289 Sum_probs=60.3
Q ss_pred CCCCcccccchhHHHHHHHHHHHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHHhcccCCCCcchhccCceEEe
Q psy14162 7 EDGKLMWEGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAKSPSVQLISKFQYC 86 (90)
Q Consensus 7 ~~~~~~r~~~~s~~dKal~kFf~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~r~~~k~l~~~~kskfv~~ 86 (90)
+..-|+|++ ++.+++++++||++|++++.+++|+..+++||||||||+|++|++||.+++++ +++|++++
T Consensus 163 ~~~ipkK~~-~~~~e~~~~~f~~~Vae~~~~~~~~~~v~~iilaGPg~~k~~f~~~l~~~~~~---------l~~kvv~v 232 (357)
T 3j15_A 163 RHNLGGKRY-NTDRESEEMKFFHDVAKTMEEVMKRENVEKAIVAGPGFVKEDFYKFLKEKYPE---------LAKKVVIE 232 (357)
T ss_dssp CCCSCSSSS-SCCCCHHHHHHHHHHHHHHHHHHHHHTCCCCEECCSTTHHHHHHHHHHHHSCC---------SSCEECCC
T ss_pred EecCCCCcc-cchHHHHHHHHHHHHHHHHHHHhcccCCCEEEEECChHHHHHHHHHHHHhhHH---------hhCeEEEE
Confidence 345576665 45789999999999999999999999999999999999999999999987533 34667766
Q ss_pred ee
Q psy14162 87 FF 88 (90)
Q Consensus 87 ~~ 88 (90)
|+
T Consensus 233 ~~ 234 (357)
T 3j15_A 233 DT 234 (357)
T ss_dssp CC
T ss_pred eC
Confidence 65
No 4
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=99.30 E-value=2.1e-12 Score=101.03 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHH
Q psy14162 21 EKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQV 66 (90)
Q Consensus 21 dKal~kFf~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~ 66 (90)
++++++||++|++++.+++||..++|||||||||+|++|++||.++
T Consensus 183 ~~~~~~f~~~V~e~~~~~~~~~~v~~iIlaGPg~~K~~f~~~l~~~ 228 (364)
T 3obw_A 183 EGIIEQNALEIATELAEYVKQYDPDAILLAGPGFFKEEVSKKVNAI 228 (364)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHCCSEEEEECSSSHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCEEEEECChHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999774
No 5
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=99.28 E-value=4.1e-12 Score=98.51 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=53.6
Q ss_pred CCCcccccchhHHHHHHHHHHHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHHhccc
Q psy14162 8 DGKLMWEGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQ 70 (90)
Q Consensus 8 ~~~~~r~~~~s~~dKal~kFf~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~r~ 70 (90)
..-|||++ +++++++++||++|++++.+++|+..+++||||||||+|++|++||..+++..
T Consensus 159 ~~vpkK~g--~q~e~~~~~f~~~Va~~l~~~~~~~~~~~lIlAGpg~~k~~f~~~L~~~~~~~ 219 (358)
T 3agj_B 159 ARLPGKDD--PSREQEVEKYVDRAAKRIVEEAARHRSPIAVIAGPGQLKTSVAEKVQRAMPSL 219 (358)
T ss_dssp CCCCCTTS--TTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEESSSHHHHHHHHHHHHSTTS
T ss_pred ecCCCCCc--hHHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECCHHHHHHHHHHHHHHhhhc
Confidence 34566663 46999999999999999999999999999999999999999999998887653
No 6
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=99.19 E-value=6.5e-12 Score=97.92 Aligned_cols=52 Identities=17% Similarity=0.415 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHHhcccCCCCcchhccCceEEeeec
Q psy14162 25 VRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAKSPSVQLISKFQYCFFH 89 (90)
Q Consensus 25 ~kFf~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~r~~~k~l~~~~kskfv~~~~~ 89 (90)
++||++|++++.++ +++|||||||||+|++|++||..+++ .+++|+++||+.
T Consensus 170 ~~F~~~V~e~~~~~----~v~~iIlaGPg~~K~~f~~~l~~~~~---------~l~~kvv~v~~s 221 (352)
T 3oby_A 170 KEFFGEVAAKLESF----DFKYLIVAGPGFAKNDFLDFLKERYP---------EMAKNAVVVDVS 221 (352)
T ss_dssp CCHHHHHHHHHHHH----CCSEEEEECSTTHHHHHHHHHHHHCH---------HHHTTEEECCCC
T ss_pred HHHHHHHHHHHHhc----CCCEEEEECCHHHHHHHHHHHHHHHH---------HhhCcEEEEECC
Confidence 79999999999999 69999999999999999999998763 244677777763
No 7
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=99.00 E-value=1.4e-10 Score=90.04 Aligned_cols=51 Identities=16% Similarity=0.389 Sum_probs=40.7
Q ss_pred CcccccchhHHHHHHHHHHHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHHhc
Q psy14162 10 KLMWEGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFT 68 (90)
Q Consensus 10 ~~~r~~~~s~~dKal~kFf~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~ 68 (90)
-||+++. ++|++ ++||++|++++.++ | +|||||||||+|++|.+|+..+++
T Consensus 163 ~~Kk~~~-s~f~r--~~F~~~V~~~~~~~-d----~~lIlaGPg~~k~~f~~~l~~~~~ 213 (347)
T 2qi2_A 163 RSGKYAE-GNYSE--ASYFDQIVNALKNY-S----NSIIILGPGFARDRFARYCAQRGV 213 (347)
T ss_dssp HHHHC-----CCH--HHHHHHHHHHHHTC-C----SCEEEEESSSHHHHHHHHHHHTSC
T ss_pred CCCcccc-chhhH--HHHHHHHHHHHHhc-C----CeEEEECCHHHHHHHHHHHHHhhc
Confidence 4555542 33444 79999999999999 4 999999999999999999998876
No 8
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=98.72 E-value=1.4e-09 Score=86.84 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhccc---cCcccEEEEeCCCccHHHHHHH
Q psy14162 20 HEKALVRFYDNVMQGILRHVN---FDIVKCVLLASPGFVKDKFFEY 62 (90)
Q Consensus 20 ~dKal~kFf~~v~~al~r~vd---F~~vk~VIIAsPGF~Kd~F~ky 62 (90)
+++++++||+.|++++.++++ +..+++||||||||+|++|++|
T Consensus 199 ree~~~~f~~~Vae~l~~~~~~~~~~~v~~lVlaGPg~~k~~f~~~ 244 (441)
T 3e20_C 199 RDEKRHNYVRKVAEGAVQHFITDDKPNVAGIVLAGSADFKTELGQS 244 (441)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCcCEEEEECCHHHHHHHHHh
Confidence 789999999999999999987 6789999999999999999995
No 9
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=98.71 E-value=4.4e-09 Score=81.23 Aligned_cols=47 Identities=23% Similarity=0.415 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHhcc---c-cCcccEEEEeCCCccHHHHH--HHHHHH
Q psy14162 20 HEKALVRFYDNVMQGILRHV---N-FDIVKCVLLASPGFVKDKFF--EYMFQV 66 (90)
Q Consensus 20 ~dKal~kFf~~v~~al~r~v---d-F~~vk~VIIAsPGF~Kd~F~--kyl~~~ 66 (90)
+++++.+||++|.+++.+++ | |..+++||||||||+|++|+ +||..+
T Consensus 191 ~e~~~~~f~~~V~~~l~~~~~~~~~~~~~~~lilaGp~~~k~~f~~~~~l~~~ 243 (373)
T 3agk_A 191 IEQMVDEFFKKVGEEASNLLVPLAEKGVLKGVIVAGPGLAKQEFVEGNYLDYR 243 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEESTTHHHHHHHSSCSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCcceEEEECChHHHHHhhhhhhcChH
Confidence 79999999999999999998 4 78999999999999999999 887643
No 10
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=98.68 E-value=1.7e-09 Score=85.30 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHhccccC---cccEEEEeCCCccHHHHHHHHH
Q psy14162 21 EKALVRFYDNVMQGILRHVNFD---IVKCVLLASPGFVKDKFFEYMF 64 (90)
Q Consensus 21 dKal~kFf~~v~~al~r~vdF~---~vk~VIIAsPGF~Kd~F~kyl~ 64 (90)
+++..+||++|++++.++++++ .+++||||||||+|++|++|+.
T Consensus 195 ee~~~~f~~~Vae~l~~~~~~~~~~~~~~lIlaGpg~~k~~f~~~~~ 241 (437)
T 1dt9_A 195 MEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDM 241 (437)
T ss_dssp HHHTTTTTTHHHHHTTTTTSCSSSCSSSCCEEEESTTTTHHHHSCSS
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCccEEEEECCHHHHHHHHHhhc
Confidence 7778899999999999999886 7899999999999999988643
No 11
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=87.92 E-value=0.48 Score=30.57 Aligned_cols=27 Identities=30% Similarity=0.690 Sum_probs=20.2
Q ss_pred HHHHHHHHhccccC-cccEEEEeCCCcc
Q psy14162 29 DNVMQGILRHVNFD-IVKCVLLASPGFV 55 (90)
Q Consensus 29 ~~v~~al~r~vdF~-~vk~VIIAsPGF~ 55 (90)
++|++.|..+++-+ .+..|-+|||||+
T Consensus 59 ~~iA~~i~~~l~~~~~i~~vevagpGFI 86 (109)
T 3gdz_A 59 RQLAEQVLSHLDLNGIANKVEIAGPGFI 86 (109)
T ss_dssp HHHHHHHHHHCCCTTTEEEEEEETTTEE
T ss_pred HHHHHHHHHhcCcCCcEeEEEEeCCCeE
Confidence 46777777766543 3788999999985
No 12
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=76.19 E-value=1.8 Score=32.22 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=21.9
Q ss_pred cccEEEEeCCCccHHHHHHHHHHHhcc
Q psy14162 43 IVKCVLLASPGFVKDKFFEYMFQVFTS 69 (90)
Q Consensus 43 ~vk~VIIAsPGF~Kd~F~kyl~~~a~r 69 (90)
..|+|||.||| |+.+.+-|.++.+.
T Consensus 99 ~~RpvVl~Gp~--K~tl~~~Ll~~~p~ 123 (292)
T 3tvt_A 99 YTRPVIILGPL--KDRINDDLISEYPD 123 (292)
T ss_dssp SCCCEEEESTT--HHHHHHHHHHHCTT
T ss_pred CCCeEEEeCCC--HHHHHHHHHHhChh
Confidence 45999999999 99999999888764
No 13
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=70.59 E-value=3.1 Score=30.80 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.1
Q ss_pred ccEEEEeCCCccHHHHHHHHHHHhc
Q psy14162 44 VKCVLLASPGFVKDKFFEYMFQVFT 68 (90)
Q Consensus 44 vk~VIIAsPGF~Kd~F~kyl~~~a~ 68 (90)
.++|||.||| |+...+.|.+..+
T Consensus 105 ~r~ivl~GPg--K~tl~~~L~~~~~ 127 (295)
T 1kjw_A 105 ARPIIILGPT--KDRANDDLLSEFP 127 (295)
T ss_dssp CCCEEEESTT--HHHHHHHHHHHCT
T ss_pred CCEEEEECCC--HHHHHHHHHhhCc
Confidence 3889999998 9999999988765
No 14
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=55.35 E-value=18 Score=27.04 Aligned_cols=52 Identities=19% Similarity=0.274 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcc-ccCcccEEEEeCCCc--cHHHHHHHHHHHhccc
Q psy14162 19 QHEKALVRFYDNVMQGILRHV-NFDIVKCVLLASPGF--VKDKFFEYMFQVFTSQ 70 (90)
Q Consensus 19 ~~dKal~kFf~~v~~al~r~v-dF~~vk~VIIAsPGF--~Kd~F~kyl~~~a~r~ 70 (90)
-.+.+++.+++.|++.+.+.+ +++.+..|+++|=|= .++++.+++.+..+..
T Consensus 265 ~i~~a~~~~~~~I~~~i~~~l~~~~~~~~Ivl~GGGa~l~~~~l~~~i~~~~~~~ 319 (355)
T 3js6_A 265 EFYKEQDSLIEEVMSNFEITVGNINSIDRIIVTGGGANIHFDSLSHYYSDVFEKA 319 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTSCSEEEEESTTHHHHHHHHHHHSSSCEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhccEEEEECcchhcchhhHHHHHHHHCCCC
Confidence 367899999999999998876 567788999999772 2233556776665544
No 15
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=52.53 E-value=12 Score=28.38 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=21.5
Q ss_pred CcccEEEEeCCCccHHHHHHHHHHHhcc
Q psy14162 42 DIVKCVLLASPGFVKDKFFEYMFQVFTS 69 (90)
Q Consensus 42 ~~vk~VIIAsPGF~Kd~F~kyl~~~a~r 69 (90)
...++|||.||| |+...+-|.++.+.
T Consensus 143 ~~~RPvVl~GP~--k~~l~~~L~~~~P~ 168 (308)
T 3kfv_A 143 SFKRPVVILGPV--ADIAMQKLTAEMPD 168 (308)
T ss_dssp SSCCCEEEESTT--HHHHHHHHHHHCTT
T ss_pred CCCCeEEEeCcc--HHHHHHHHHHhCcc
Confidence 347999999996 99988888887664
No 16
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=47.24 E-value=80 Score=23.00 Aligned_cols=50 Identities=12% Similarity=0.237 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhc-cccCcccEEEEeCCCccHHHHHHHHHHHhc
Q psy14162 17 VKQHEKALVRFYDNVMQGILRH-VNFDIVKCVLLASPGFVKDKFFEYMFQVFT 68 (90)
Q Consensus 17 ~s~~dKal~kFf~~v~~al~r~-vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~ 68 (90)
+...+.+++.+.++|++++.+. .+.+.+..|+++|=| +.-+.+++.+..+
T Consensus 251 ~~~i~~~~~e~~~~I~~~i~~~~~~~~~~~~IvltGGG--A~l~~~~l~~~~~ 301 (329)
T 4apw_A 251 STVIKKVKEKFLKDAIKLIEKRGFKLDQLDSLIFIGGT--TQKLKEQISKTYP 301 (329)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTCCTTSCSEEEEESTT--HHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHccEEEEECCh--HHHHHHHHHHHcC
Confidence 4558899999999999999874 444557899999988 4446677776654
No 17
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=43.77 E-value=19 Score=24.74 Aligned_cols=24 Identities=13% Similarity=0.433 Sum_probs=19.7
Q ss_pred cEEEEeCCC-ccHHHHHHHHHHHhc
Q psy14162 45 KCVLLASPG-FVKDKFFEYMFQVFT 68 (90)
Q Consensus 45 k~VIIAsPG-F~Kd~F~kyl~~~a~ 68 (90)
|+|||.||. ==|+.+.+.|.++.+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 689999994 459999999987754
No 18
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=41.65 E-value=24 Score=20.83 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhc
Q psy14162 21 EKALVRFYDNVMQGILRH 38 (90)
Q Consensus 21 dKal~kFf~~v~~al~r~ 38 (90)
++-|.+||+++..-|.+|
T Consensus 34 ~~dL~eF~qMl~~I~~~~ 51 (56)
T 1oks_A 34 ANDLAKFHQMLVKIIMKH 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHh
Confidence 678899999999988876
No 19
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=39.14 E-value=42 Score=22.26 Aligned_cols=41 Identities=5% Similarity=0.090 Sum_probs=27.8
Q ss_pred HHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHHhcccCCCC
Q psy14162 29 DNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAKS 74 (90)
Q Consensus 29 ~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~r~~~k~ 74 (90)
+.+++.|.+. -+++||+|.|-...+-.+-+.+-+.+.+-..
T Consensus 25 ~~aa~~L~~A-----krPvil~G~g~~~~~a~~~l~~lae~~~iPV 65 (170)
T 3cf4_G 25 EMAAKIISKA-----KRPLLMVGTLALDPELLDRVVKISKAANIPI 65 (170)
T ss_dssp HHHHHHHHHC-----SSEEEEECSTTCCHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHcC-----CCCEEEECCCccchhHHHHHHHHHHHhCCCE
Confidence 3455566654 6899999999877666666666665555443
No 20
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=38.60 E-value=27 Score=26.24 Aligned_cols=25 Identities=16% Similarity=0.088 Sum_probs=21.3
Q ss_pred cEEEEe--CCCccHHHHHHHHHHHhcc
Q psy14162 45 KCVLLA--SPGFVKDKFFEYMFQVFTS 69 (90)
Q Consensus 45 k~VIIA--sPGF~Kd~F~kyl~~~a~r 69 (90)
++|+++ +|||+-+.++-.+..++.+
T Consensus 182 ~pv~v~kd~pGFi~NRl~~~~~~EA~~ 208 (319)
T 3ado_A 182 SPVRVLKEIDGFVLNRLQYAIISEAWR 208 (319)
T ss_dssp EEEECSSCCTTTTHHHHHHHHHHHHHH
T ss_pred ccCCcCCCCCCEeHHHHHHHHHHHHHH
Confidence 477775 8999999999999888876
No 21
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=38.55 E-value=57 Score=20.35 Aligned_cols=35 Identities=9% Similarity=0.065 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHH
Q psy14162 27 FYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQV 66 (90)
Q Consensus 27 Ff~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~ 66 (90)
+++.+++.|.+. -+.|.|++|-|.-+.+.+-|.+.
T Consensus 15 ~~~~~~~~i~~A-----~~~I~i~~~~~~~~~i~~aL~~a 49 (155)
T 1byr_A 15 ARVLVLSAIDSA-----KTSIRMMAYSFTAPDIMKALVAA 49 (155)
T ss_dssp HHHHHHHHHHHC-----SSEEEEEESSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----hhEEEEEEEEeCCHHHHHHHHHH
Confidence 344444455443 34566666666555555555443
No 22
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=37.49 E-value=21 Score=21.32 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=21.6
Q ss_pred CCccHHHHHHHHHHHhcccCCCCc
Q psy14162 52 PGFVKDKFFEYMFQVFTSQQAKSP 75 (90)
Q Consensus 52 PGF~Kd~F~kyl~~~a~r~~~k~l 75 (90)
|+|++.-..+-+...|...+...|
T Consensus 17 P~FVR~kvrr~tE~~Are~G~~~I 40 (62)
T 2l09_A 17 PFFARSQAKARIEQLARQAEQDIV 40 (62)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCSEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCCeE
Confidence 999999999999999988887776
No 23
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=35.94 E-value=25 Score=28.78 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=20.4
Q ss_pred cccEEEEeCCCccHHHHHHHHHHHhc
Q psy14162 43 IVKCVLLASPGFVKDKFFEYMFQVFT 68 (90)
Q Consensus 43 ~vk~VIIAsPGF~Kd~F~kyl~~~a~ 68 (90)
..++|||.||| |+.+.+.|.+..+
T Consensus 530 ~~r~vvl~GP~--K~tl~~~L~~~~~ 553 (721)
T 2xkx_A 530 YARPIIILGPT--KDRANDDLLSEFP 553 (721)
T ss_pred CCCEEEEECCC--HHHHHHHHHHhCc
Confidence 35899999999 9999999887654
No 24
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=32.81 E-value=54 Score=22.90 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHHh
Q psy14162 22 KALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVF 67 (90)
Q Consensus 22 Kal~kFf~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a 67 (90)
+.++++.+.+...+...++.-+...|||.|.-...+.|++.+.+..
T Consensus 206 ~i~~~~~~~L~~~i~~l~~~l~p~~IvlgG~i~~~~~~~~~l~~~l 251 (292)
T 2gup_A 206 EAIERMNRNLAQGLLNIQYLIDPGVISLGGSISQNPDFIQGVKKAV 251 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEeCccccchHHHHHHHHHH
Confidence 4556666666666644444445668999997754556666665443
No 25
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}
Probab=30.90 E-value=34 Score=24.23 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=15.1
Q ss_pred HHHHHHHHHhccccCcccEEEEeCCC
Q psy14162 28 YDNVMQGILRHVNFDIVKCVLLASPG 53 (90)
Q Consensus 28 f~~v~~al~r~vdF~~vk~VIIAsPG 53 (90)
++++.+++...-+ +++++|||.|-|
T Consensus 36 ~~~L~~al~~~~~-~~vr~vVltg~g 60 (254)
T 3isa_A 36 VEALIDGVDAAHR-EQVPLLVFAGAG 60 (254)
T ss_dssp HHHHHHHHHHHHH-TTCSEEEEEEST
T ss_pred HHHHHHHHHHhhc-CCcEEEEEECCC
Confidence 3344444433323 579999998866
No 26
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.84 E-value=93 Score=18.94 Aligned_cols=36 Identities=6% Similarity=0.026 Sum_probs=25.1
Q ss_pred HHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHHhcc
Q psy14162 28 YDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTS 69 (90)
Q Consensus 28 f~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~r 69 (90)
++++..+|.+. ..+.||||+-. -++..+.+...+..
T Consensus 20 ~~~v~kai~~g----ka~lViiA~D~--~~~~~~~i~~~c~~ 55 (99)
T 3j21_Z 20 SNETIRLAKTG----GAKLIIVAKNA--PKEIKDDIYYYAKL 55 (99)
T ss_dssp HHHHHHHHHHT----CCSEEEEECCC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC----CccEEEEeCCC--CHHHHHHHHHHHHH
Confidence 35677777774 69999999984 56666666555444
No 27
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=29.25 E-value=21 Score=21.39 Aligned_cols=24 Identities=17% Similarity=0.027 Sum_probs=21.5
Q ss_pred CCccHHHHHHHHHHHhcccCCCCc
Q psy14162 52 PGFVKDKFFEYMFQVFTSQQAKSP 75 (90)
Q Consensus 52 PGF~Kd~F~kyl~~~a~r~~~k~l 75 (90)
|+|++.-..+-+...|...+...|
T Consensus 18 P~FVR~kvrr~tE~~Are~G~~~I 41 (63)
T 2kru_A 18 PFFVRKKVRKNTDNYAREIGEPVV 41 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCCeE
Confidence 999999999999999988887776
No 28
>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}
Probab=28.96 E-value=47 Score=23.81 Aligned_cols=12 Identities=25% Similarity=0.254 Sum_probs=9.8
Q ss_pred CcccEEEEeCCC
Q psy14162 42 DIVKCVLLASPG 53 (90)
Q Consensus 42 ~~vk~VIIAsPG 53 (90)
+++++|||.|-|
T Consensus 49 d~vr~vVltg~g 60 (267)
T 3hp0_A 49 STVTVVVLEGLP 60 (267)
T ss_dssp SSCCEEEEECCS
T ss_pred CCCEEEEEECCC
Confidence 459999998866
No 29
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=27.74 E-value=1.3e+02 Score=20.84 Aligned_cols=34 Identities=9% Similarity=-0.053 Sum_probs=19.9
Q ss_pred HHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHH
Q psy14162 29 DNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65 (90)
Q Consensus 29 ~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~ 65 (90)
+.+++++.+.-+ +++.++|+|+|- .+.+.+.+.+
T Consensus 200 ~~li~a~~~l~~--~~~~l~i~G~~~-~~~l~~~~~~ 233 (364)
T 1f0k_A 200 QTMPQVAAKLGD--SVTIWHQSGKGS-QQSVEQAYAE 233 (364)
T ss_dssp HHHHHHHHHHGG--GEEEEEECCTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CcEEEEEcCCch-HHHHHHHHhh
Confidence 444455544332 466788999997 3555555443
No 30
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=26.95 E-value=1.2e+02 Score=21.77 Aligned_cols=47 Identities=11% Similarity=0.059 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHHhcc
Q psy14162 21 EKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTS 69 (90)
Q Consensus 21 dKal~kFf~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~r 69 (90)
.+.++.+-+.+...|...+..-+...|||.|+-. +.|.+.+.+...+
T Consensus 262 ~~il~~~~~~La~~i~~l~~~l~P~~IvlgG~i~--~~~~~~l~~~l~~ 308 (343)
T 2yhw_A 262 QSILRTAGTALGLGVVNILHTMNPSLVILSGVLA--SHYIHIVKDVIRQ 308 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSEEEEESTTH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCcH--HHHHHHHHHHHHH
Confidence 3456666666666665554444567899999753 6677777665443
No 31
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Probab=26.76 E-value=25 Score=26.78 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=21.6
Q ss_pred ccEEEEeCCCccHHHH-HHHHHHHhcccCCCCc
Q psy14162 44 VKCVLLASPGFVKDKF-FEYMFQVFTSQQAKSP 75 (90)
Q Consensus 44 vk~VIIAsPGF~Kd~F-~kyl~~~a~r~~~k~l 75 (90)
--||||||||-..... ..|+...+.+..|..|
T Consensus 305 ~p~viia~~gm~~~G~~~~~l~~~~~~~~n~ii 337 (431)
T 3iek_A 305 GPMVVLAGSGMLAGGRILHHLKHGLSDPRNALV 337 (431)
T ss_dssp SSEEEEESCTTSSSSHHHHHHHHHTTCTTCEEE
T ss_pred CCeEEEecCCCCCCChHHHHHHHhcCCCCCeEE
Confidence 3589999998766544 4456666666655544
No 32
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=26.75 E-value=1.3e+02 Score=20.51 Aligned_cols=48 Identities=6% Similarity=-0.086 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCc-ccEEEEeCCCccHHHHHHHHHHH
Q psy14162 19 QHEKALVRFYDNVMQGILRHVNFDI-VKCVLLASPGFVKDKFFEYMFQV 66 (90)
Q Consensus 19 ~~dKal~kFf~~v~~al~r~vdF~~-vk~VIIAsPGF~Kd~F~kyl~~~ 66 (90)
..+..+...++.+.+.+.+.++... +..|++.|-|--=..+.+.+.+.
T Consensus 201 ~~~~~~~~~~~~i~~~i~~~l~~~~~~~~ivL~GG~a~~~~l~~~l~~~ 249 (272)
T 3h1q_A 201 EIMRVVRPVIEKMALIVKEVIKNYDQTLPVYVVGGTAYLTGFSEEFSRF 249 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCSSCCEEEESGGGGSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCccchhhHHHHHHHH
Confidence 4566677888888888888886655 77899988553323444444443
No 33
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=26.23 E-value=83 Score=21.97 Aligned_cols=48 Identities=8% Similarity=-0.013 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHHhcc
Q psy14162 22 KALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTS 69 (90)
Q Consensus 22 Kal~kFf~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~r 69 (90)
..++++-+.+...+...++.-+...|||.|.-+..+.|.+.+.+...+
T Consensus 218 ~il~~~~~~La~~i~~l~~~l~p~~IvlgGgv~~~~~~~~~l~~~~~~ 265 (299)
T 2e2o_A 218 DILKQGAELLASQAVYLARKIGTNKVYLKGGMFRSNIYHKFFTLYLEK 265 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSEEEEESGGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEECCccCcHHHHHHHHHHCCC
Confidence 455566666666555544433567899999766556777777665443
No 34
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=25.85 E-value=1.2e+02 Score=19.59 Aligned_cols=31 Identities=32% Similarity=0.607 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhccccCcccEEEEeCCCccHHHHHHH
Q psy14162 27 FYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEY 62 (90)
Q Consensus 27 Ff~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~ky 62 (90)
+-++|.++|.+. -+.|+|-||.|+....-.+
T Consensus 50 ~~~~i~~~i~~S-----r~~I~VlS~~y~~S~wc~~ 80 (149)
T 1fyx_A 50 IIDNIIDSIEKS-----HKTVFVLSENFVKSEWXKY 80 (149)
T ss_dssp HHHHHHHHHHHE-----EEEEEEECHHHHHHHTHHH
T ss_pred HHHHHHHHHHHc-----CEEEEEeCcchhccchHHH
Confidence 445677777665 6799999999998876543
No 35
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}
Probab=25.83 E-value=37 Score=24.57 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhccccCcccEEEEeCCC
Q psy14162 27 FYDNVMQGILRHVNFDIVKCVLLASPG 53 (90)
Q Consensus 27 Ff~~v~~al~r~vdF~~vk~VIIAsPG 53 (90)
.++++.+++.+. | +++++|||.|-|
T Consensus 44 ~~~~L~~al~~~-d-~~vr~vVltg~g 68 (275)
T 3hin_A 44 LMAALKDCLTDI-P-DQIRAVVIHGIG 68 (275)
T ss_dssp HHHHHHHHTSSC-C-TTCCEEEEEESS
T ss_pred HHHHHHHHHHHh-C-cCceEEEEECCC
Confidence 455666666554 5 689999998876
No 36
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=25.30 E-value=1.2e+02 Score=18.43 Aligned_cols=37 Identities=11% Similarity=-0.061 Sum_probs=25.5
Q ss_pred HHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHHhcccC
Q psy14162 29 DNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQ 71 (90)
Q Consensus 29 ~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~r~~ 71 (90)
+++..+|.+- ..+.||||+-. -++..+.+...+...+
T Consensus 22 ~~v~kai~~g----ka~lViiA~D~--~~~~~~~l~~~c~~~~ 58 (101)
T 1w41_A 22 RKSIQYAKMG----GAKLIIVARNA--RPDIKEDIEYYARLSG 58 (101)
T ss_dssp HHHHHHHHHT----CCSEEEEETTS--CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcC----CCcEEEEeCCC--CHHHHHHHHHHHHhcC
Confidence 4566777764 68999999983 5667777666555433
No 37
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=25.03 E-value=40 Score=25.88 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=14.3
Q ss_pred cccEEEEeCCCccHHHH
Q psy14162 43 IVKCVLLASPGFVKDKF 59 (90)
Q Consensus 43 ~vk~VIIAsPGF~Kd~F 59 (90)
.++.|+|.-|||+.|-.
T Consensus 262 G~k~vvv~P~gFvsD~l 278 (359)
T 3hcn_A 262 GRKNILLVPIAFTSDHI 278 (359)
T ss_dssp TCCEEEEECTTCCSCCC
T ss_pred CCCeEEEECCccchhhH
Confidence 47899999999998654
No 38
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=25.02 E-value=1.3e+02 Score=19.28 Aligned_cols=28 Identities=7% Similarity=-0.076 Sum_probs=19.7
Q ss_pred cccEEEEeC-CCccHHHHHHHHHHHhccc
Q psy14162 43 IVKCVLLAS-PGFVKDKFFEYMFQVFTSQ 70 (90)
Q Consensus 43 ~vk~VIIAs-PGF~Kd~F~kyl~~~a~r~ 70 (90)
...+|+|.| ||-=|..+.+.+..+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 355666666 5888999988887766543
No 39
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=24.23 E-value=1.2e+02 Score=18.87 Aligned_cols=37 Identities=14% Similarity=-0.079 Sum_probs=25.4
Q ss_pred HHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHHhccc
Q psy14162 28 YDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQ 70 (90)
Q Consensus 28 f~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~r~ 70 (90)
++++..+|.+. ..+.||||+-. -++..+.+...+...
T Consensus 26 ~~~v~kai~~g----ka~lViiA~D~--~~~~~~~l~~~c~~~ 62 (110)
T 3cpq_A 26 SKRTIKFVKHG----EGKLVVLAGNI--PKDLEEDVKYYAKLS 62 (110)
T ss_dssp HHHHHHHHHTT----CCSEEEECTTC--BHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcC----CceEEEEeCCC--CHHHHHHHHHHHHHc
Confidence 35666777664 69999999988 556666665555443
No 40
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=23.72 E-value=1.3e+02 Score=18.81 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=15.4
Q ss_pred EEEEeC-CCccHHHHHHHHHHHh
Q psy14162 46 CVLLAS-PGFVKDKFFEYMFQVF 67 (90)
Q Consensus 46 ~VIIAs-PGF~Kd~F~kyl~~~a 67 (90)
.++|.| ||.=|..+.+.+.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 455555 5888888888876654
No 41
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=23.44 E-value=1.1e+02 Score=21.78 Aligned_cols=50 Identities=10% Similarity=0.018 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHhccccCcccEEEEeCCCccH-HHHHHHHHHHhccc
Q psy14162 21 EKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVK-DKFFEYMFQVFTSQ 70 (90)
Q Consensus 21 dKal~kFf~~v~~al~r~vdF~~vk~VIIAsPGF~K-d~F~kyl~~~a~r~ 70 (90)
...+++|-+.+...|...++.-+...|||.|.-.-. +.|.+.+.+...+.
T Consensus 238 ~~~~~~~~~~La~~i~~l~~~ldP~~IvlgG~i~~~~~~l~~~l~~~l~~~ 288 (321)
T 3r8e_A 238 LAVWADIGTIIGESLVNIVRVMDLNNILLGGGISGAFDYFVPNLKKAMLEH 288 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCEEEEESGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEeChhcccchHHHHHHHHHHHHh
Confidence 345667776666666555555567899999987654 56667766655443
No 42
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}
Probab=21.81 E-value=94 Score=22.00 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=15.7
Q ss_pred HHHHHHHHHhccccCcccEEEEeCCC
Q psy14162 28 YDNVMQGILRHVNFDIVKCVLLASPG 53 (90)
Q Consensus 28 f~~v~~al~r~vdF~~vk~VIIAsPG 53 (90)
++++.+++...-+=+++++|||.|-|
T Consensus 35 ~~~L~~al~~~~~d~~vr~vVltg~g 60 (263)
T 3l3s_A 35 IAALHDALRRAMGDDHVHVLVIHGPG 60 (263)
T ss_dssp HHHHHHHHHHHHTCTTCCEEEEECCS
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCC
Confidence 34444444433222579999999876
No 43
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=21.74 E-value=1.5e+02 Score=21.41 Aligned_cols=28 Identities=7% Similarity=-0.079 Sum_probs=19.0
Q ss_pred cccCcccEEEEeCCCccHHHHHHHHHHH
Q psy14162 39 VNFDIVKCVLLASPGFVKDKFFEYMFQV 66 (90)
Q Consensus 39 vdF~~vk~VIIAsPGF~Kd~F~kyl~~~ 66 (90)
++.+++..|+|+||+-.-..-.+.+.++
T Consensus 53 ~~~~~I~~iiISSVvp~~~~~l~~~~~~ 80 (266)
T 3djc_A 53 CSPETIRKIAICSVVPQVDYSLRSACVK 80 (266)
T ss_dssp CCGGGCCEEEEEESCHHHHHHHHHHHHH
T ss_pred CChhhceEEEEecchHhHHHHHHHHHHH
Confidence 3456799999999997655444444443
No 44
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=21.56 E-value=1.1e+02 Score=21.95 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHHhcc
Q psy14162 22 KALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTS 69 (90)
Q Consensus 22 Kal~kFf~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~r 69 (90)
..++.|-+.+...|...++.-+...|||.|.-.-..+|++.+.+...+
T Consensus 203 ~~~~~~~~~La~~i~nl~~~ldPe~IviGGgi~~~~~l~~~i~~~l~~ 250 (302)
T 3epq_A 203 QVWELEGYYIAQALAQYILILAPXXIILGGGVMQQXQVFSYIYQYVPK 250 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSCEEEESSGGGCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCchhhhcCchhhhhHHHHHHHHHHHHH
Confidence 456677777777776666666788999999644334466666555444
No 45
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}
Probab=21.42 E-value=78 Score=22.87 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhccccCcccEEEEeCCC
Q psy14162 27 FYDNVMQGILRHVNFDIVKCVLLASPG 53 (90)
Q Consensus 27 Ff~~v~~al~r~vdF~~vk~VIIAsPG 53 (90)
+++++.+++.+.-+=+++++|||.|-|
T Consensus 52 ~~~~L~~al~~~~~d~~vr~vVltg~G 78 (290)
T 3sll_A 52 VMLPFKQMLVDISHDNDVRAVVITGAG 78 (290)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEEEST
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEECCC
Confidence 344444444443222579999998865
No 46
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0
Probab=20.96 E-value=70 Score=22.72 Aligned_cols=12 Identities=25% Similarity=0.385 Sum_probs=10.3
Q ss_pred CcccEEEEeCCC
Q psy14162 42 DIVKCVLLASPG 53 (90)
Q Consensus 42 ~~vk~VIIAsPG 53 (90)
+++++|||.|-|
T Consensus 54 ~~vr~vVltg~g 65 (274)
T 3tlf_A 54 DRVWLLVVTGTG 65 (274)
T ss_dssp TTCCEEEEEEST
T ss_pred CCeEEEEEeCCC
Confidence 579999999876
No 47
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=20.95 E-value=86 Score=22.21 Aligned_cols=49 Identities=12% Similarity=0.241 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHHhcc
Q psy14162 21 EKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTS 69 (90)
Q Consensus 21 dKal~kFf~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~r 69 (90)
...++.|-+.+...|...++.-+...|||.|.-.-.+.|.+.+.+...+
T Consensus 215 ~~~~~~~~~~La~~i~~l~~~~~p~~IvlgGgi~~~~~~~~~l~~~l~~ 263 (297)
T 4htl_A 215 ERLITEFYTGICTGLYNLIYLFDPTHIFIGGGITSRPTFIAELKHHMES 263 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGSTTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccccHHHHHHHHHHHHH
Confidence 3456677776666666555555677899999655556677777665543
No 48
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}
Probab=20.92 E-value=70 Score=22.82 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=15.9
Q ss_pred HHHHHHHHHhccccCcccEEEEeCCC--ccH
Q psy14162 28 YDNVMQGILRHVNFDIVKCVLLASPG--FVK 56 (90)
Q Consensus 28 f~~v~~al~r~vdF~~vk~VIIAsPG--F~K 56 (90)
++++.++|.+.-+=+++++|||.|.| |..
T Consensus 49 ~~~L~~al~~~~~d~~vr~vVltg~g~~F~a 79 (278)
T 4f47_A 49 MQIMVEAWDRVDNDPDIRCCILTGAGGYFCA 79 (278)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEESTTCCC-
T ss_pred HHHHHHHHHHHhcCCCeeEEEEECCCCcccC
Confidence 33444444332222579999998765 644
No 49
>1w99_A Pesticidial crystal protein CRY4BA; membrane pore, BIO-insecticide, dipteran specificity, conformational change; 1.75A {Bacillus thuringiensis serovarisraelensis}
Probab=20.68 E-value=31 Score=28.11 Aligned_cols=15 Identities=13% Similarity=0.426 Sum_probs=12.4
Q ss_pred EEEEeCCCccHHHHH
Q psy14162 46 CVLLASPGFVKDKFF 60 (90)
Q Consensus 46 ~VIIAsPGF~Kd~F~ 60 (90)
+-||.||||+--|..
T Consensus 412 ~~VikGPGfTGGDlv 426 (558)
T 1w99_A 412 AKVIKGPGHTGGDLV 426 (558)
T ss_dssp EEEECCCSSSSSCEE
T ss_pred ceEEeCCCcCCCceE
Confidence 579999999987764
No 50
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus HB8} PDB: 3hrx_A
Probab=20.67 E-value=73 Score=22.43 Aligned_cols=12 Identities=33% Similarity=0.592 Sum_probs=10.1
Q ss_pred CcccEEEEeCCC
Q psy14162 42 DIVKCVLLASPG 53 (90)
Q Consensus 42 ~~vk~VIIAsPG 53 (90)
+++++|||.|.|
T Consensus 43 ~~vr~vVltg~g 54 (254)
T 3gow_A 43 REVRALLLTGAG 54 (254)
T ss_dssp TTCCEEEEEEST
T ss_pred CCeEEEEEECCC
Confidence 569999998876
No 51
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Probab=20.50 E-value=71 Score=23.28 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=15.1
Q ss_pred HHHHHHHHHhccccCcccEEEEeCCC
Q psy14162 28 YDNVMQGILRHVNFDIVKCVLLASPG 53 (90)
Q Consensus 28 f~~v~~al~r~vdF~~vk~VIIAsPG 53 (90)
++++.++|.+.-+=+++++|||.|-|
T Consensus 59 ~~~L~~al~~~~~d~~vr~vVltg~G 84 (298)
T 3qre_A 59 AAGFYAAIDRAEADPGIRVIVLTGRG 84 (298)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEEST
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCC
Confidence 33444444332222579999998866
No 52
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A
Probab=20.48 E-value=71 Score=23.64 Aligned_cols=27 Identities=15% Similarity=-0.037 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhccccCcccEEEEeCCC
Q psy14162 27 FYDNVMQGILRHVNFDIVKCVLLASPG 53 (90)
Q Consensus 27 Ff~~v~~al~r~vdF~~vk~VIIAsPG 53 (90)
+++++.++|.+.-+=+++++|||.|-|
T Consensus 63 m~~eL~~al~~~~~d~~vrvvVltG~G 89 (333)
T 3njd_A 63 TPLELSALVERADLDPDVHVILVSGRG 89 (333)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEEST
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 344444444443222579999998865
No 53
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0
Probab=20.19 E-value=77 Score=22.63 Aligned_cols=12 Identities=25% Similarity=0.517 Sum_probs=10.1
Q ss_pred CcccEEEEeCCC
Q psy14162 42 DIVKCVLLASPG 53 (90)
Q Consensus 42 ~~vk~VIIAsPG 53 (90)
+++++|||.|-|
T Consensus 47 ~~vr~vVltg~g 58 (268)
T 3i47_A 47 TNVRVIVLKANG 58 (268)
T ss_dssp TTCSEEEEEECS
T ss_pred CCeEEEEEECCC
Confidence 579999998876
No 54
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=20.14 E-value=46 Score=25.41 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=14.1
Q ss_pred cccEEEEeCCCccHHHH
Q psy14162 43 IVKCVLLASPGFVKDKF 59 (90)
Q Consensus 43 ~vk~VIIAsPGF~Kd~F 59 (90)
.++-|+|.-|||+.|-.
T Consensus 266 G~k~vvVvP~gFvsD~l 282 (362)
T 1lbq_A 266 KVDGLMFIPIAFTSDHI 282 (362)
T ss_dssp GCSCEEEECTTCSSCCH
T ss_pred CCCeEEEECCeechhhH
Confidence 47889999999988765
No 55
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=20.10 E-value=1.4e+02 Score=22.12 Aligned_cols=41 Identities=7% Similarity=0.057 Sum_probs=26.2
Q ss_pred HHHHHHHHhccccCcccEEEEeC-CCccHHHHHHHHHHHhcc
Q psy14162 29 DNVMQGILRHVNFDIVKCVLLAS-PGFVKDKFFEYMFQVFTS 69 (90)
Q Consensus 29 ~~v~~al~r~vdF~~vk~VIIAs-PGF~Kd~F~kyl~~~a~r 69 (90)
++++..|...+.-....+|+|.| ||--|....+++..+..+
T Consensus 30 ~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 30 TRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34444444444334567776666 788899988888776644
Done!