RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14162
(90 letters)
>2vgn_A DOM34; translation termination factor, protein biosynthesis,
translation regulation, cell division, mRNA degradation;
2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2
d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Length = 386
Score = 59.3 bits (143), Expect = 3e-12
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 15 GDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAK 73
DV + ++ +FY + + + +NFD +K ++L SPGF + +FQ + K
Sbjct: 179 TDVLKFDEKTEKFYKAIYSAMKKDLNFDKLKTIILCSPGFYAKILMDKIFQYAEEEHNK 237
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein
protein complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 390
Score = 56.3 bits (135), Expect = 4e-11
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 15 GDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAK 73
GD ++K L +FYD+V Q I +FD +K V+LASPGFV ++Y+F + K
Sbjct: 173 GDSSAYQKGLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYIFSMAVKLDLK 231
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex;
HET: GTP; 2.30A {Aeropyrum pernix}
Length = 358
Score = 54.0 bits (129), Expect = 2e-10
Identities = 8/48 (16%), Positives = 19/48 (39%)
Query: 18 KQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
E+ + ++ D + I+ ++A PG +K E + +
Sbjct: 167 PSREQEVEKYVDRAAKRIVEEAARHRSPIAVIAGPGQLKTSVAEKVQR 214
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea,
translation-transport complex; HET: ADP; 6.60A
{Pyrococcus furiosus}
Length = 357
Score = 51.7 bits (123), Expect = 1e-09
Identities = 12/56 (21%), Positives = 30/56 (53%)
Query: 18 KQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAK 73
E ++F+ +V + + + + V+ ++A PGFVK+ F++++ + + K
Sbjct: 173 TDRESEEMKFFHDVAKTMEEVMKRENVEKAIVAGPGFVKEDFYKFLKEKYPELAKK 228
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus
solfataricus}
Length = 364
Score = 48.2 bits (114), Expect = 2e-08
Identities = 9/50 (18%), Positives = 21/50 (42%)
Query: 14 EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYM 63
+ + E + + + + +V +LLA PGF K++ + +
Sbjct: 176 LRPLNEEEGIIEQNALEIATELAEYVKQYDPDAILLAGPGFFKEEVSKKV 225
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell
cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1
c.55.4.2 d.79.3.2
Length = 347
Score = 47.5 bits (112), Expect = 5e-08
Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 15 GDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
G + + ++D ++ + + N +++ PGF +D+F Y Q
Sbjct: 165 GKYAEGNYSEASYFDQIVNALKNYSN-----SIIILGPGFARDRFARYCAQ 210
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus
fulgidus}
Length = 352
Score = 42.0 bits (98), Expect = 4e-06
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 15 GDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
G K + F+ V + K +++A PGF K+ F +++ +
Sbjct: 160 GYGKGMGDSRKEFFGEVAA----KLESFDFKYLIVAGPGFAKNDFLDFLKE 206
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A
{Aeropyrum pernix}
Length = 373
Score = 40.0 bits (92), Expect = 2e-05
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 18 KQHEKALVRFYDNV----MQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
+ E+ + F+ V ++ ++K V++A PG K +F E +
Sbjct: 189 RIIEQMVDEFFKKVGEEASNLLVPLAEKGVLKGVIVAGPGLAKQEFVEGNYL 240
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 0.28
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 6/26 (23%)
Query: 71 QAKSPSVQLISKFQYCF------FHS 90
Q++ P + KF F FHS
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHS 429
>1qc7_A Protein (FLIG); flagellar motor switch protein, structural
protein; 2.20A {Thermotoga maritima} SCOP: a.118.14.1
Length = 101
Score = 27.5 bits (61), Expect = 0.35
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 24 LVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYM 63
+++ D +Q +LR V+ + L + +K+K F+ M
Sbjct: 7 ILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNM 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.8 bits (53), Expect = 4.7
Identities = 5/42 (11%), Positives = 19/42 (45%)
Query: 14 EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFV 55
+ ++ A++ F + + ++ D+++ L+A +
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle,
antiviral protein; 2.40A {Homo sapiens}
Length = 271
Score = 24.2 bits (52), Expect = 6.6
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 52 PGFVKDKFFEYMFQVFTSQQAKSPSVQLISK 82
PGFV + FE + + + + P+V ++
Sbjct: 81 PGFVNYRTFETIVKQQI-KALEEPAVDMLHT 110
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.141 0.434
Gapped
Lambda K H
0.267 0.0695 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,337,334
Number of extensions: 64851
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 15
Length of query: 90
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 33
Effective length of database: 5,110,296
Effective search space: 168639768
Effective search space used: 168639768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.5 bits)