RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14162
         (90 letters)



>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae
           [TaxId: 4932]}
          Length = 142

 Score = 70.6 bits (173), Expect = 7e-18
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 15  GDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAKS 74
            DV + ++   +FY  +   + + +NFD +K ++L SPGF      + +FQ    +  K 
Sbjct: 44  TDVLKFDEKTEKFYKAIYSAMKKDLNFDKLKTIILCSPGFYAKILMDKIFQYAEEEHNKK 103

Query: 75  PSVQLISKF 83
             +     F
Sbjct: 104 -ILDNKGMF 111


>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota
          {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 117

 Score = 42.8 bits (101), Expect = 2e-07
 Identities = 7/46 (15%), Positives = 20/46 (43%), Gaps = 5/46 (10%)

Query: 18 KQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYM 63
           +   +   ++D ++  +  +        +++  PGF +D+F  Y 
Sbjct: 42 AEGNYSEASYFDQIVNALKNYS-----NSIIILGPGFARDRFARYC 82


>d1qc7a_ a.118.14.1 (A:) FliG {Thermotoga maritima [TaxId: 2336]}
          Length = 101

 Score = 28.5 bits (64), Expect = 0.045
 Identities = 10/40 (25%), Positives = 21/40 (52%)

Query: 24 LVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYM 63
          +++  D  +Q +LR V+   +   L  +   +K+K F+ M
Sbjct: 7  ILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNM 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.141    0.434 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 334,433
Number of extensions: 13035
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 9
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.1 bits)