Query psy14164
Match_columns 361
No_of_seqs 283 out of 1287
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 21:05:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14164.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14164hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2160|consensus 100.0 3.8E-41 8.3E-46 319.0 25.7 309 41-354 6-335 (342)
2 KOG0166|consensus 100.0 7E-32 1.5E-36 268.3 23.6 261 87-354 217-491 (514)
3 COG5064 SRP1 Karyopherin (impo 100.0 4.5E-31 9.7E-36 247.1 18.4 264 83-352 216-499 (526)
4 KOG0166|consensus 99.9 8.8E-22 1.9E-26 196.3 17.1 201 101-306 112-314 (514)
5 COG5064 SRP1 Karyopherin (impo 99.9 2.9E-21 6.3E-26 181.4 13.8 245 72-321 60-337 (526)
6 PLN03200 cellulose synthase-in 99.8 9.9E-19 2.1E-23 196.6 27.1 184 115-302 378-561 (2102)
7 PLN03200 cellulose synthase-in 99.8 2.1E-17 4.7E-22 186.0 28.1 189 113-305 417-643 (2102)
8 PF08609 Fes1: Nucleotide exch 99.7 5.3E-17 1.1E-21 128.3 7.9 89 46-137 2-92 (92)
9 KOG4224|consensus 99.7 1.8E-15 3.8E-20 143.8 19.0 193 114-312 181-375 (550)
10 cd00020 ARM Armadillo/beta-cat 99.6 1.1E-14 2.5E-19 118.8 15.0 119 136-255 2-120 (120)
11 KOG4224|consensus 99.5 3.1E-13 6.8E-18 128.6 17.9 291 18-321 162-470 (550)
12 cd00020 ARM Armadillo/beta-cat 99.5 3.5E-13 7.7E-18 109.9 14.5 118 178-299 2-119 (120)
13 KOG2160|consensus 99.3 3.5E-10 7.5E-15 108.3 23.3 184 116-304 60-244 (342)
14 PF10508 Proteasom_PSMB: Prote 99.3 4.5E-10 9.8E-15 115.2 25.1 185 113-305 51-235 (503)
15 PF05804 KAP: Kinesin-associat 99.3 5.4E-10 1.2E-14 117.5 24.2 220 118-347 267-499 (708)
16 PF04826 Arm_2: Armadillo-like 99.2 3.8E-09 8.2E-14 99.0 21.2 196 97-302 11-207 (254)
17 PF04826 Arm_2: Armadillo-like 99.2 1.9E-09 4.2E-14 100.9 17.4 157 139-305 10-168 (254)
18 KOG4199|consensus 99.1 2.4E-08 5.1E-13 94.9 24.2 219 81-303 167-406 (461)
19 KOG4199|consensus 99.1 6.4E-09 1.4E-13 98.7 19.1 180 115-299 257-443 (461)
20 PF10508 Proteasom_PSMB: Prote 99.1 4.6E-08 9.9E-13 100.5 24.7 166 112-280 89-255 (503)
21 PF05804 KAP: Kinesin-associat 99.1 3.3E-08 7.2E-13 104.1 24.0 179 113-303 303-482 (708)
22 KOG1293|consensus 98.9 3.4E-08 7.3E-13 100.5 16.3 172 131-306 367-539 (678)
23 KOG1517|consensus 98.9 3.5E-08 7.6E-13 104.4 16.7 213 83-302 448-673 (1387)
24 PF03224 V-ATPase_H_N: V-ATPas 98.9 2.4E-07 5.2E-12 89.5 21.2 188 112-304 69-273 (312)
25 KOG1048|consensus 98.8 7.6E-08 1.6E-12 100.0 13.2 196 100-300 235-452 (717)
26 KOG0168|consensus 98.8 3.6E-07 7.9E-12 95.3 18.0 204 95-308 164-375 (1051)
27 KOG1048|consensus 98.7 1.7E-07 3.7E-12 97.4 14.6 198 143-347 235-450 (717)
28 PRK09687 putative lyase; Provi 98.6 9.3E-07 2E-11 84.2 15.2 169 101-299 26-220 (280)
29 cd00256 VATPase_H VATPase_H, r 98.6 2.1E-05 4.5E-10 78.7 24.3 198 100-302 55-260 (429)
30 KOG2122|consensus 98.5 3.3E-06 7.1E-11 92.3 17.3 229 78-309 251-568 (2195)
31 KOG4500|consensus 98.5 3.5E-06 7.7E-11 82.6 14.4 161 151-314 52-224 (604)
32 PRK09687 putative lyase; Provi 98.5 7.3E-06 1.6E-10 78.1 16.1 158 112-300 66-250 (280)
33 KOG0946|consensus 98.5 2.2E-05 4.7E-10 81.9 20.3 203 97-300 60-296 (970)
34 KOG1293|consensus 98.4 3E-05 6.4E-10 79.5 20.2 153 112-267 389-545 (678)
35 PF00514 Arm: Armadillo/beta-c 98.4 6.7E-07 1.4E-11 59.8 5.7 41 172-213 1-41 (41)
36 PTZ00429 beta-adaptin; Provisi 98.3 0.00015 3.2E-09 77.6 23.9 169 113-306 45-214 (746)
37 KOG2171|consensus 98.3 7.5E-05 1.6E-09 80.8 21.1 154 144-304 351-508 (1075)
38 PF12348 CLASP_N: CLASP N term 98.3 7.2E-06 1.6E-10 75.2 11.9 189 108-306 15-212 (228)
39 KOG2122|consensus 98.3 6.6E-06 1.4E-10 90.0 13.1 172 130-304 426-605 (2195)
40 KOG0168|consensus 98.3 7.1E-05 1.5E-09 78.6 19.3 239 107-353 219-474 (1051)
41 PF05536 Neurochondrin: Neuroc 98.2 0.00024 5.1E-09 73.8 22.3 197 97-303 4-216 (543)
42 PF13646 HEAT_2: HEAT repeats; 98.2 8.9E-06 1.9E-10 62.9 7.6 86 143-251 1-88 (88)
43 PF08045 CDC14: Cell division 98.2 4.9E-05 1.1E-09 71.0 13.7 102 154-255 104-207 (257)
44 KOG0946|consensus 98.2 0.0001 2.3E-09 76.9 17.3 211 97-312 21-253 (970)
45 PF01602 Adaptin_N: Adaptin N 98.1 0.00017 3.6E-09 74.1 19.0 213 76-304 53-300 (526)
46 KOG2171|consensus 98.1 0.00017 3.6E-09 78.2 19.2 195 99-299 348-548 (1075)
47 PF03224 V-ATPase_H_N: V-ATPas 98.1 0.00015 3.2E-09 70.1 17.0 175 113-290 118-304 (312)
48 KOG4500|consensus 98.1 0.00032 6.9E-09 69.2 18.9 181 117-303 241-434 (604)
49 PF00514 Arm: Armadillo/beta-c 98.1 7.4E-06 1.6E-10 54.7 5.5 41 215-255 1-41 (41)
50 KOG2759|consensus 98.1 0.00071 1.5E-08 66.6 20.9 199 97-303 64-274 (442)
51 PF13513 HEAT_EZ: HEAT-like re 98.1 8.4E-06 1.8E-10 57.8 5.8 55 155-211 1-55 (55)
52 PF01602 Adaptin_N: Adaptin N 98.0 0.0004 8.7E-09 71.2 19.3 99 143-253 81-179 (526)
53 PRK13800 putative oxidoreducta 98.0 0.00039 8.3E-09 76.5 19.8 59 228-299 777-835 (897)
54 KOG3678|consensus 98.0 8.7E-05 1.9E-09 73.7 12.8 158 139-302 178-338 (832)
55 PRK13800 putative oxidoreducta 98.0 0.00039 8.5E-09 76.5 19.2 126 139-298 740-865 (897)
56 PF09759 Atx10homo_assoc: Spin 98.0 4.8E-05 1E-09 61.2 8.4 67 157-223 2-69 (102)
57 PTZ00429 beta-adaptin; Provisi 97.9 0.0042 9.2E-08 66.7 24.6 193 81-296 49-244 (746)
58 PF13646 HEAT_2: HEAT repeats; 97.9 3.6E-05 7.8E-10 59.4 6.6 88 185-296 1-88 (88)
59 cd00256 VATPase_H VATPase_H, r 97.7 0.0031 6.8E-08 63.3 19.2 184 114-301 158-426 (429)
60 PF13513 HEAT_EZ: HEAT-like re 97.7 6.5E-05 1.4E-09 53.2 5.3 54 199-253 2-55 (55)
61 KOG4646|consensus 97.7 0.00044 9.5E-09 58.3 10.7 122 151-275 27-148 (173)
62 PF11841 DUF3361: Domain of un 97.7 0.0015 3.3E-08 56.7 14.1 127 133-260 3-136 (160)
63 smart00185 ARM Armadillo/beta- 97.6 0.00012 2.6E-09 48.1 5.0 39 132-170 3-41 (41)
64 KOG1062|consensus 97.6 0.008 1.7E-07 63.4 20.0 188 147-352 113-326 (866)
65 KOG1517|consensus 97.6 0.0011 2.3E-08 71.4 13.9 172 130-304 543-736 (1387)
66 PF09759 Atx10homo_assoc: Spin 97.6 0.00047 1E-08 55.5 8.3 68 200-267 2-71 (102)
67 KOG2759|consensus 97.5 0.0055 1.2E-07 60.4 16.9 202 96-301 153-439 (442)
68 KOG3678|consensus 97.5 0.0031 6.7E-08 63.0 14.7 175 100-278 182-361 (832)
69 COG5369 Uncharacterized conser 97.5 0.00044 9.5E-09 69.8 8.8 141 158-302 406-547 (743)
70 PF05536 Neurochondrin: Neuroc 97.5 0.0065 1.4E-07 63.2 17.5 153 143-303 7-171 (543)
71 KOG4413|consensus 97.4 0.003 6.5E-08 60.6 13.3 155 143-301 84-244 (524)
72 KOG1241|consensus 97.4 0.0033 7.2E-08 65.9 14.7 162 142-306 365-536 (859)
73 KOG1222|consensus 97.4 0.022 4.7E-07 57.3 19.3 170 124-301 450-622 (791)
74 smart00185 ARM Armadillo/beta- 97.4 0.00043 9.4E-09 45.4 5.3 38 217-254 3-40 (41)
75 PF14664 RICTOR_N: Rapamycin-i 97.4 0.018 4E-07 57.1 18.6 223 114-349 39-269 (371)
76 PF14664 RICTOR_N: Rapamycin-i 97.3 0.006 1.3E-07 60.5 14.8 184 112-304 80-273 (371)
77 PF12348 CLASP_N: CLASP N term 97.3 0.012 2.7E-07 53.7 16.0 184 151-348 17-205 (228)
78 COG5096 Vesicle coat complex, 97.3 0.0062 1.3E-07 64.8 15.2 140 143-301 57-196 (757)
79 KOG4646|consensus 97.3 0.0091 2E-07 50.5 12.6 109 113-223 30-138 (173)
80 PF05918 API5: Apoptosis inhib 97.2 0.02 4.3E-07 59.2 17.8 138 144-301 26-163 (556)
81 PF11698 V-ATPase_H_C: V-ATPas 97.2 0.001 2.3E-08 54.9 6.4 73 183-255 43-115 (119)
82 COG5369 Uncharacterized conser 97.2 0.002 4.3E-08 65.2 9.4 160 138-302 428-596 (743)
83 PF11698 V-ATPase_H_C: V-ATPas 97.2 0.001 2.2E-08 55.0 6.0 82 90-172 35-117 (119)
84 PF12460 MMS19_C: RNAPII trans 97.1 0.029 6.2E-07 56.5 17.4 128 143-275 273-413 (415)
85 KOG2023|consensus 97.1 0.0072 1.6E-07 62.7 12.8 171 147-332 96-270 (885)
86 TIGR02270 conserved hypothetic 97.1 0.0077 1.7E-07 60.5 12.7 118 143-298 88-205 (410)
87 PF05004 IFRD: Interferon-rela 97.1 0.26 5.6E-06 47.7 22.8 194 99-303 44-260 (309)
88 PF08569 Mo25: Mo25-like; Int 97.0 0.26 5.6E-06 48.2 22.2 188 153-345 135-331 (335)
89 TIGR02270 conserved hypothetic 97.0 0.14 3E-06 51.5 20.7 129 142-302 148-298 (410)
90 COG1413 FOG: HEAT repeat [Ener 97.0 0.0094 2E-07 57.8 12.2 138 142-302 75-244 (335)
91 KOG2259|consensus 97.0 0.011 2.4E-07 61.2 12.6 178 115-301 194-440 (823)
92 KOG1061|consensus 97.0 0.0096 2.1E-07 62.6 12.3 145 141-304 49-193 (734)
93 PF12755 Vac14_Fab1_bd: Vacuol 96.9 0.012 2.6E-07 47.1 10.3 89 158-249 3-91 (97)
94 KOG1059|consensus 96.9 0.15 3.2E-06 53.7 20.4 92 115-218 124-215 (877)
95 PF12460 MMS19_C: RNAPII trans 96.9 0.29 6.3E-06 49.2 22.5 195 97-307 188-401 (415)
96 KOG0213|consensus 96.9 0.0067 1.5E-07 63.5 10.2 143 145-300 803-954 (1172)
97 PF11841 DUF3361: Domain of un 96.7 0.053 1.2E-06 47.2 13.2 126 176-305 4-136 (160)
98 KOG1222|consensus 96.7 0.04 8.6E-07 55.5 13.7 120 131-255 335-455 (791)
99 PF12717 Cnd1: non-SMC mitotic 96.7 0.27 5.9E-06 43.4 18.0 93 154-256 1-93 (178)
100 KOG2023|consensus 96.7 0.039 8.4E-07 57.5 13.9 155 142-302 129-287 (885)
101 PF12717 Cnd1: non-SMC mitotic 96.7 0.05 1.1E-06 48.1 13.1 95 198-305 2-98 (178)
102 KOG1060|consensus 96.6 0.79 1.7E-05 48.9 23.2 167 113-308 48-214 (968)
103 PF10165 Ric8: Guanine nucleot 96.6 0.064 1.4E-06 54.6 15.1 174 121-298 2-216 (446)
104 PF12755 Vac14_Fab1_bd: Vacuol 96.6 0.021 4.5E-07 45.7 9.2 93 200-300 2-96 (97)
105 KOG1248|consensus 96.5 0.26 5.6E-06 54.4 19.7 213 81-302 674-900 (1176)
106 COG5096 Vesicle coat complex, 96.5 0.2 4.3E-06 53.7 18.5 162 78-256 33-196 (757)
107 PF02985 HEAT: HEAT repeat; I 96.5 0.0048 1E-07 38.4 4.0 29 143-171 2-30 (31)
108 PF06371 Drf_GBD: Diaphanous G 96.5 0.025 5.4E-07 50.0 10.2 110 184-299 67-186 (187)
109 KOG1991|consensus 96.5 0.27 5.8E-06 53.4 19.2 117 99-218 411-537 (1010)
110 KOG1824|consensus 96.5 0.14 3.1E-06 55.3 16.9 193 99-307 818-1043(1233)
111 COG5181 HSH155 U2 snRNP splice 96.5 0.0082 1.8E-07 61.8 7.6 148 143-300 606-759 (975)
112 KOG4535|consensus 96.4 0.013 2.9E-07 58.7 8.6 179 116-300 407-603 (728)
113 KOG4413|consensus 96.4 0.11 2.3E-06 50.3 14.1 182 96-280 76-267 (524)
114 KOG1241|consensus 96.4 0.034 7.3E-07 58.6 11.4 154 141-307 319-484 (859)
115 KOG1789|consensus 96.4 0.34 7.4E-06 53.2 18.8 180 115-299 1740-1945(2235)
116 PF08045 CDC14: Cell division 96.3 0.084 1.8E-06 49.5 13.0 104 198-302 105-209 (257)
117 KOG3036|consensus 96.3 0.35 7.6E-06 44.9 16.5 211 46-264 22-255 (293)
118 KOG2999|consensus 96.3 0.23 4.9E-06 50.9 16.3 162 94-258 79-245 (713)
119 KOG0414|consensus 96.3 0.1 2.2E-06 57.5 14.8 144 141-302 918-1066(1251)
120 COG1413 FOG: HEAT repeat [Ener 96.2 0.084 1.8E-06 51.1 12.9 136 141-302 43-211 (335)
121 KOG0212|consensus 96.2 0.17 3.6E-06 52.0 14.9 209 84-304 23-283 (675)
122 KOG2734|consensus 96.2 0.86 1.9E-05 45.7 19.3 209 114-323 98-329 (536)
123 KOG1991|consensus 96.1 0.37 8.1E-06 52.3 17.6 167 77-262 359-539 (1010)
124 PF10165 Ric8: Guanine nucleot 96.0 0.13 2.8E-06 52.3 13.8 131 172-305 11-173 (446)
125 PF12031 DUF3518: Domain of un 96.0 0.039 8.4E-07 51.0 8.8 114 48-194 110-227 (257)
126 PF14668 RICTOR_V: Rapamycin-i 96.0 0.041 8.9E-07 41.6 7.5 63 158-222 4-66 (73)
127 KOG1062|consensus 95.9 0.14 3E-06 54.4 13.3 154 143-307 144-349 (866)
128 PF04869 Uso1_p115_head: Uso1 95.9 0.75 1.6E-05 44.6 17.6 149 154-302 51-233 (312)
129 KOG1059|consensus 95.7 2 4.4E-05 45.6 20.7 34 142-175 182-215 (877)
130 cd03569 VHS_Hrs_Vps27p VHS dom 95.7 0.22 4.7E-06 42.6 11.7 73 142-214 42-115 (142)
131 PF04078 Rcd1: Cell differenti 95.7 1 2.2E-05 42.3 16.9 187 114-303 9-221 (262)
132 KOG2734|consensus 95.7 2.7 5.9E-05 42.3 21.0 205 96-302 177-402 (536)
133 KOG1058|consensus 95.7 0.28 6E-06 52.0 14.3 148 143-305 245-393 (948)
134 KOG2274|consensus 95.7 1.1 2.4E-05 48.5 18.8 151 78-229 543-705 (1005)
135 KOG1789|consensus 95.7 0.26 5.6E-06 54.1 14.1 142 156-302 1740-1885(2235)
136 KOG2973|consensus 95.6 0.49 1.1E-05 45.4 14.4 151 144-302 6-163 (353)
137 PF12719 Cnd3: Nuclear condens 95.6 0.76 1.6E-05 44.0 16.2 110 141-256 26-144 (298)
138 PF04869 Uso1_p115_head: Uso1 95.5 0.82 1.8E-05 44.3 16.1 150 197-349 51-231 (312)
139 KOG0213|consensus 95.5 0.36 7.8E-06 51.1 14.2 180 114-302 855-1067(1172)
140 PF11707 Npa1: Ribosome 60S bi 95.3 2 4.4E-05 41.8 18.6 158 143-303 58-240 (330)
141 PF08324 PUL: PUL domain; Int 95.3 0.36 7.8E-06 45.3 12.9 196 75-273 34-249 (268)
142 KOG1242|consensus 95.3 0.82 1.8E-05 47.4 16.0 169 115-301 269-445 (569)
143 PF02985 HEAT: HEAT repeat; I 95.3 0.036 7.8E-07 34.4 4.0 30 184-214 1-30 (31)
144 KOG0301|consensus 95.2 1.4 3E-05 46.2 17.3 191 78-279 519-727 (745)
145 KOG1240|consensus 95.2 0.83 1.8E-05 50.8 16.3 97 114-213 437-537 (1431)
146 KOG2259|consensus 95.2 0.1 2.2E-06 54.4 9.0 149 135-304 367-515 (823)
147 KOG2956|consensus 95.1 3.4 7.3E-05 41.9 19.3 188 95-300 283-477 (516)
148 COG5215 KAP95 Karyopherin (imp 95.0 2.6 5.6E-05 43.8 18.3 187 114-304 148-361 (858)
149 smart00288 VHS Domain present 95.0 0.42 9.1E-06 40.3 10.9 72 142-213 38-111 (133)
150 PF13251 DUF4042: Domain of un 94.9 0.29 6.3E-06 43.6 10.3 144 156-303 1-177 (182)
151 PF11701 UNC45-central: Myosin 94.8 0.28 6.1E-06 42.6 9.8 146 142-296 4-155 (157)
152 PF01347 Vitellogenin_N: Lipop 94.8 1.6 3.5E-05 46.0 17.5 164 145-344 435-617 (618)
153 KOG2025|consensus 94.8 0.56 1.2E-05 49.5 13.3 129 115-251 60-189 (892)
154 KOG1242|consensus 94.7 6.2 0.00014 41.1 20.6 196 97-309 95-292 (569)
155 PF00790 VHS: VHS domain; Int 94.7 0.51 1.1E-05 40.1 11.0 72 142-213 43-118 (140)
156 cd03567 VHS_GGA VHS domain fam 94.7 0.63 1.4E-05 39.7 11.4 72 142-213 39-116 (139)
157 PF06371 Drf_GBD: Diaphanous G 94.6 0.11 2.4E-06 45.8 6.9 92 119-212 83-186 (187)
158 PF08167 RIX1: rRNA processing 94.6 0.51 1.1E-05 41.3 11.0 111 143-258 27-146 (165)
159 KOG1248|consensus 94.6 8.6 0.00019 43.0 22.3 167 81-254 590-766 (1176)
160 PF13764 E3_UbLigase_R4: E3 ub 94.5 3.7 8E-05 44.7 19.1 243 95-349 117-406 (802)
161 cd03561 VHS VHS domain family; 94.5 0.71 1.5E-05 38.8 11.2 73 142-214 38-113 (133)
162 KOG2999|consensus 94.4 0.87 1.9E-05 46.8 13.3 158 143-305 85-247 (713)
163 PF04078 Rcd1: Cell differenti 94.4 4.6 0.0001 38.0 18.1 166 97-265 41-227 (262)
164 KOG1967|consensus 94.2 0.64 1.4E-05 50.3 12.5 163 175-349 860-1024(1030)
165 KOG2611|consensus 94.2 3.1 6.8E-05 42.3 16.5 196 146-352 16-229 (698)
166 KOG2025|consensus 94.1 4.6 9.9E-05 43.0 18.0 123 82-211 63-191 (892)
167 smart00638 LPD_N Lipoprotein N 94.1 2.6 5.7E-05 44.1 17.0 132 143-295 395-540 (574)
168 PF04063 DUF383: Domain of unk 94.1 0.63 1.4E-05 41.9 10.6 130 150-281 4-160 (192)
169 cd03568 VHS_STAM VHS domain fa 94.0 0.77 1.7E-05 39.3 10.6 73 142-214 38-111 (144)
170 COG5181 HSH155 U2 snRNP splice 94.0 0.58 1.3E-05 48.7 11.1 154 141-303 688-873 (975)
171 COG5231 VMA13 Vacuolar H+-ATPa 94.0 2.1 4.5E-05 41.5 14.1 79 219-300 347-428 (432)
172 KOG1240|consensus 94.0 3 6.4E-05 46.7 17.0 209 94-309 454-734 (1431)
173 PF06025 DUF913: Domain of Unk 93.8 1.7 3.7E-05 43.3 14.1 121 155-276 123-255 (379)
174 KOG2137|consensus 93.7 1.5 3.2E-05 46.4 13.8 136 137-280 385-520 (700)
175 PF14668 RICTOR_V: Rapamycin-i 93.6 0.36 7.9E-06 36.4 6.9 67 201-269 4-71 (73)
176 KOG4151|consensus 93.5 0.58 1.2E-05 49.8 10.6 203 137-352 500-713 (748)
177 KOG1020|consensus 93.4 3.4 7.3E-05 47.3 16.5 153 97-260 765-926 (1692)
178 KOG3036|consensus 93.3 4.4 9.6E-05 37.9 14.6 185 115-302 39-249 (293)
179 PF11701 UNC45-central: Myosin 93.3 0.96 2.1E-05 39.2 10.1 102 148-251 50-155 (157)
180 PF06025 DUF913: Domain of Unk 93.2 9.8 0.00021 37.9 18.7 160 120-280 4-208 (379)
181 KOG1824|consensus 93.2 2.2 4.7E-05 46.7 14.1 154 142-304 48-207 (1233)
182 KOG0212|consensus 92.9 2.8 6.2E-05 43.3 14.0 141 115-258 265-409 (675)
183 KOG2274|consensus 92.8 16 0.00035 39.9 19.9 148 115-265 545-699 (1005)
184 COG5215 KAP95 Karyopherin (imp 92.8 14 0.00031 38.6 20.5 191 97-302 38-252 (858)
185 KOG1061|consensus 92.7 1.2 2.7E-05 47.2 11.5 163 79-258 28-192 (734)
186 PF08569 Mo25: Mo25-like; Int 92.5 11 0.00025 36.8 18.2 148 118-266 141-297 (335)
187 COG5240 SEC21 Vesicle coat com 92.4 1.5 3.2E-05 45.5 11.2 54 198-254 501-554 (898)
188 KOG1820|consensus 92.3 3.3 7.1E-05 45.2 14.5 170 115-302 268-445 (815)
189 KOG1832|consensus 92.3 0.33 7.1E-06 52.3 6.7 154 115-270 567-787 (1516)
190 KOG4151|consensus 92.2 2.9 6.4E-05 44.7 13.6 213 42-274 499-718 (748)
191 KOG2611|consensus 92.2 9.1 0.0002 39.1 16.2 136 112-251 23-181 (698)
192 PF13251 DUF4042: Domain of un 92.2 4.7 0.0001 36.0 13.0 139 116-257 2-176 (182)
193 PF14225 MOR2-PAG1_C: Cell mor 92.1 3.1 6.7E-05 39.3 12.6 145 137-302 107-256 (262)
194 KOG1243|consensus 92.1 2.6 5.5E-05 44.6 12.8 71 139-213 328-398 (690)
195 KOG1943|consensus 92.0 2 4.4E-05 47.3 12.3 152 141-301 341-501 (1133)
196 COG5218 YCG1 Chromosome conden 92.0 16 0.00035 38.3 18.0 140 143-295 51-194 (885)
197 KOG4653|consensus 91.9 8.9 0.00019 41.7 16.6 192 97-303 726-921 (982)
198 KOG1967|consensus 91.8 0.9 2E-05 49.2 9.2 146 142-294 868-1018(1030)
199 KOG1058|consensus 91.7 3.7 8.1E-05 43.9 13.3 152 143-302 136-348 (948)
200 PF13764 E3_UbLigase_R4: E3 ub 91.6 3.2 7E-05 45.2 13.5 132 134-266 110-269 (802)
201 COG5231 VMA13 Vacuolar H+-ATPa 91.4 4.7 0.0001 39.1 12.7 120 136-255 274-428 (432)
202 cd03561 VHS VHS domain family; 91.3 3.4 7.3E-05 34.7 10.8 96 202-302 18-114 (133)
203 KOG1077|consensus 91.2 11 0.00023 40.3 16.0 69 107-178 155-224 (938)
204 PF12830 Nipped-B_C: Sister ch 91.2 3.9 8.4E-05 36.4 11.7 70 143-221 10-82 (187)
205 COG5240 SEC21 Vesicle coat com 91.1 22 0.00047 37.3 17.8 147 142-303 304-480 (898)
206 cd03569 VHS_Hrs_Vps27p VHS dom 91.0 2.2 4.8E-05 36.4 9.4 93 202-301 22-115 (142)
207 PF05918 API5: Apoptosis inhib 90.9 5.7 0.00012 41.5 13.9 127 106-251 28-158 (556)
208 KOG2973|consensus 90.8 16 0.00036 35.3 18.8 240 95-349 41-315 (353)
209 cd03567 VHS_GGA VHS domain fam 90.8 2.2 4.8E-05 36.3 9.2 96 202-302 19-118 (139)
210 PF05004 IFRD: Interferon-rela 90.7 17 0.00036 35.2 17.9 150 99-254 87-256 (309)
211 PF04063 DUF383: Domain of unk 90.6 6 0.00013 35.6 12.2 151 199-358 10-187 (192)
212 PF12719 Cnd3: Nuclear condens 90.5 2.8 6E-05 40.1 10.7 111 183-302 26-145 (298)
213 PF10363 DUF2435: Protein of u 90.5 1.4 3E-05 34.8 7.1 72 143-217 5-76 (92)
214 KOG2956|consensus 89.9 17 0.00036 37.1 15.6 146 98-255 329-477 (516)
215 COG5116 RPN2 26S proteasome re 89.9 1.3 2.8E-05 45.9 8.0 98 143-256 553-651 (926)
216 KOG0413|consensus 89.4 2.1 4.5E-05 46.9 9.3 128 155-301 945-1074(1529)
217 smart00288 VHS Domain present 89.4 4.1 8.8E-05 34.3 9.6 93 202-300 18-111 (133)
218 KOG1077|consensus 89.3 19 0.00041 38.6 16.0 169 117-300 306-488 (938)
219 COG5656 SXM1 Importin, protein 89.2 36 0.00077 36.8 18.4 165 76-257 356-530 (970)
220 COG5098 Chromosome condensatio 89.2 7.4 0.00016 41.5 12.9 144 141-303 891-1040(1128)
221 KOG1060|consensus 89.2 2.7 5.9E-05 45.1 9.9 63 145-212 433-495 (968)
222 COG5209 RCD1 Uncharacterized p 89.1 6.4 0.00014 36.4 11.1 148 115-264 115-276 (315)
223 cd03568 VHS_STAM VHS domain fa 89.1 1.8 4E-05 37.0 7.4 93 203-302 19-112 (144)
224 KOG2062|consensus 89.0 1.9 4.1E-05 45.9 8.6 89 152-256 566-654 (929)
225 KOG1566|consensus 89.0 23 0.0005 34.3 21.3 146 199-347 181-336 (342)
226 KOG4535|consensus 88.9 1.5 3.3E-05 44.6 7.5 103 151-255 401-513 (728)
227 KOG2933|consensus 88.5 4.6 0.0001 38.9 10.2 141 98-255 88-234 (334)
228 KOG1020|consensus 88.4 24 0.00053 40.8 17.0 172 157-353 793-965 (1692)
229 PF08216 CTNNBL: Catenin-beta- 88.0 1.9 4.2E-05 35.0 6.3 48 113-160 59-106 (108)
230 cd00197 VHS_ENTH_ANTH VHS, ENT 87.7 7.5 0.00016 31.5 9.9 93 202-299 18-114 (115)
231 KOG2032|consensus 87.6 9.6 0.00021 39.0 12.2 118 135-255 248-371 (533)
232 PF12463 DUF3689: Protein of u 87.4 10 0.00022 36.6 12.0 134 175-308 1-181 (303)
233 PF00790 VHS: VHS domain; Int 87.3 4.2 9E-05 34.4 8.5 94 202-302 23-120 (140)
234 COG5116 RPN2 26S proteasome re 87.1 6.2 0.00013 41.1 10.7 131 146-302 521-652 (926)
235 PF11865 DUF3385: Domain of un 87.0 6.5 0.00014 34.2 9.7 142 143-299 12-156 (160)
236 smart00638 LPD_N Lipoprotein N 86.6 8.8 0.00019 40.1 12.2 108 154-292 459-570 (574)
237 PF08167 RIX1: rRNA processing 86.5 7.8 0.00017 33.8 10.0 115 184-306 26-149 (165)
238 PF08506 Cse1: Cse1; InterPro 86.5 26 0.00056 34.8 14.7 142 95-250 210-370 (370)
239 COG5098 Chromosome condensatio 86.5 3.9 8.5E-05 43.4 9.0 109 143-258 301-418 (1128)
240 COG5218 YCG1 Chromosome conden 86.3 25 0.00055 37.0 14.5 107 135-249 86-193 (885)
241 PF08324 PUL: PUL domain; Int 86.0 10 0.00022 35.4 11.2 178 143-325 65-254 (268)
242 PF06685 DUF1186: Protein of u 85.8 31 0.00068 32.3 15.2 99 153-276 54-161 (249)
243 PF12397 U3snoRNP10: U3 small 85.6 8.8 0.00019 31.4 9.4 68 143-215 8-76 (121)
244 PF12830 Nipped-B_C: Sister ch 85.2 23 0.0005 31.4 12.5 144 100-255 10-167 (187)
245 KOG2062|consensus 85.1 9.5 0.00021 40.9 11.1 136 139-302 516-655 (929)
246 PF01347 Vitellogenin_N: Lipop 84.8 16 0.00035 38.4 13.2 120 143-293 488-615 (618)
247 PF01365 RYDR_ITPR: RIH domain 84.5 4.2 9E-05 36.7 7.5 116 135-256 37-170 (207)
248 PF14500 MMS19_N: Dos2-interac 83.9 19 0.00042 33.9 11.9 143 146-301 4-154 (262)
249 KOG0414|consensus 83.8 6.2 0.00014 44.1 9.5 112 143-258 314-431 (1251)
250 KOG0567|consensus 83.8 40 0.00087 31.9 14.5 59 142-212 68-128 (289)
251 PF14726 RTTN_N: Rotatin, an a 83.5 13 0.00027 29.8 8.9 92 156-249 2-94 (98)
252 cd03572 ENTH_epsin_related ENT 83.2 9.2 0.0002 31.8 8.3 79 269-351 39-121 (122)
253 KOG3665|consensus 83.1 56 0.0012 35.3 16.4 95 207-304 494-591 (699)
254 PF10363 DUF2435: Protein of u 82.6 5.4 0.00012 31.4 6.5 71 229-304 6-76 (92)
255 PF10521 DUF2454: Protein of u 82.5 26 0.00056 33.3 12.4 72 142-213 120-203 (282)
256 PLN03205 ATR interacting prote 82.2 17 0.00038 36.3 11.0 164 143-307 325-523 (652)
257 COG5209 RCD1 Uncharacterized p 81.8 15 0.00033 34.0 9.8 183 116-301 61-269 (315)
258 KOG1943|consensus 81.6 49 0.0011 37.0 15.1 141 152-301 555-706 (1133)
259 PF07814 WAPL: Wings apart-lik 81.1 25 0.00053 34.8 12.0 91 101-193 24-116 (361)
260 cd03565 VHS_Tom1 VHS domain fa 80.5 35 0.00075 29.0 11.5 72 143-214 40-116 (141)
261 KOG4653|consensus 79.6 23 0.00049 38.7 11.6 101 150-252 856-961 (982)
262 KOG0301|consensus 79.6 92 0.002 33.3 18.9 153 149-309 552-713 (745)
263 cd03565 VHS_Tom1 VHS domain fa 79.3 26 0.00056 29.8 10.1 95 202-301 19-116 (141)
264 PF12530 DUF3730: Protein of u 79.2 53 0.0011 30.3 13.5 138 143-300 2-151 (234)
265 KOG0567|consensus 79.2 59 0.0013 30.8 14.2 133 100-253 69-214 (289)
266 PF08506 Cse1: Cse1; InterPro 78.6 45 0.00098 33.1 13.0 133 154-295 224-370 (370)
267 PF04499 SAPS: SIT4 phosphatas 78.5 19 0.00042 37.0 10.6 65 173-237 52-116 (475)
268 cd03572 ENTH_epsin_related ENT 78.4 29 0.00064 28.8 9.8 94 202-300 19-119 (122)
269 KOG2038|consensus 77.7 57 0.0012 35.4 13.7 74 184-263 305-378 (988)
270 KOG2038|consensus 77.1 1.1E+02 0.0024 33.3 15.5 69 228-304 306-374 (988)
271 PF01365 RYDR_ITPR: RIH domain 76.8 8.4 0.00018 34.7 6.7 121 173-301 33-170 (207)
272 PF12530 DUF3730: Protein of u 76.7 62 0.0013 29.8 16.1 128 113-256 14-152 (234)
273 KOG2676|consensus 76.0 3 6.4E-05 40.9 3.6 64 160-223 375-439 (478)
274 PF04388 Hamartin: Hamartin pr 75.5 39 0.00084 36.4 12.2 81 154-235 81-161 (668)
275 PF14500 MMS19_N: Dos2-interac 75.3 15 0.00034 34.6 8.3 69 230-302 3-71 (262)
276 PF04821 TIMELESS: Timeless pr 75.0 53 0.0011 31.0 11.8 166 115-302 9-210 (266)
277 KOG1087|consensus 74.9 25 0.00055 36.0 10.2 68 143-210 40-109 (470)
278 KOG0915|consensus 74.9 85 0.0018 36.7 14.8 153 143-305 1000-1165(1702)
279 PF04388 Hamartin: Hamartin pr 72.4 28 0.0006 37.5 10.2 59 198-256 82-141 (668)
280 KOG1243|consensus 72.1 59 0.0013 34.7 12.2 131 112-255 266-398 (690)
281 PRK14707 hypothetical protein; 71.9 2.5E+02 0.0054 34.5 19.6 155 142-301 836-992 (2710)
282 KOG0211|consensus 71.5 86 0.0019 34.2 13.7 131 116-254 214-344 (759)
283 KOG2199|consensus 70.7 59 0.0013 32.5 11.1 96 199-302 23-120 (462)
284 smart00802 UME Domain in UVSB 70.5 47 0.001 26.9 8.9 73 97-173 10-86 (107)
285 KOG2032|consensus 69.9 46 0.001 34.2 10.4 115 181-301 252-372 (533)
286 KOG1820|consensus 69.8 1.8E+02 0.0039 32.1 16.3 145 146-303 258-403 (815)
287 PF14663 RasGEF_N_2: Rapamycin 69.7 15 0.00032 30.1 5.9 40 142-182 9-48 (115)
288 KOG2137|consensus 69.4 72 0.0016 34.2 12.2 137 95-239 382-521 (700)
289 PF08389 Xpo1: Exportin 1-like 69.2 24 0.00053 29.1 7.4 84 76-165 63-148 (148)
290 KOG1949|consensus 69.2 1.6E+02 0.0034 32.0 14.3 135 114-254 188-330 (1005)
291 KOG0211|consensus 69.0 99 0.0021 33.8 13.4 146 144-302 162-307 (759)
292 PF10274 ParcG: Parkin co-regu 68.5 88 0.0019 27.9 11.0 75 225-303 37-112 (183)
293 PF10521 DUF2454: Protein of u 68.2 55 0.0012 31.0 10.4 70 184-254 120-202 (282)
294 PF07814 WAPL: Wings apart-lik 67.7 41 0.00088 33.2 9.7 93 185-278 23-116 (361)
295 KOG0915|consensus 67.5 1.8E+02 0.0038 34.3 15.1 182 115-302 1054-1267(1702)
296 KOG2199|consensus 67.4 42 0.0009 33.5 9.3 98 101-203 10-108 (462)
297 KOG1078|consensus 67.1 25 0.00054 38.0 8.2 54 197-255 479-532 (865)
298 cd08050 TAF6 TATA Binding Prot 67.0 1.3E+02 0.0029 29.4 13.3 133 76-211 171-338 (343)
299 PF01603 B56: Protein phosphat 66.9 1.5E+02 0.0032 29.9 18.8 155 144-310 220-380 (409)
300 cd00197 VHS_ENTH_ANTH VHS, ENT 66.4 67 0.0014 25.8 11.7 69 143-211 39-113 (115)
301 KOG3665|consensus 66.1 1.3E+02 0.0028 32.6 13.7 174 164-348 494-696 (699)
302 KOG0413|consensus 66.0 29 0.00064 38.5 8.6 109 184-300 577-685 (1529)
303 KOG2073|consensus 63.4 22 0.00048 39.0 7.3 72 132-214 148-221 (838)
304 PF11864 DUF3384: Domain of un 62.6 1.9E+02 0.004 29.6 15.9 103 84-193 13-117 (464)
305 COG5656 SXM1 Importin, protein 62.2 2.4E+02 0.0053 30.8 16.2 88 143-236 462-549 (970)
306 PF01603 B56: Protein phosphat 62.1 1.8E+02 0.0039 29.2 16.1 99 117-216 107-207 (409)
307 PF06012 DUF908: Domain of Unk 61.8 45 0.00098 32.4 8.7 62 156-218 237-302 (329)
308 KOG2549|consensus 61.7 2.1E+02 0.0045 30.0 13.4 126 143-280 209-351 (576)
309 KOG1078|consensus 61.5 2.3E+02 0.0051 30.9 14.1 74 228-309 247-320 (865)
310 KOG1525|consensus 60.6 25 0.00055 40.3 7.4 149 140-301 258-406 (1266)
311 PF08064 UME: UME (NUC010) dom 60.6 87 0.0019 25.1 9.2 70 100-173 13-86 (107)
312 PRK14707 hypothetical protein; 60.2 4E+02 0.0088 32.8 16.5 149 143-297 333-484 (2710)
313 KOG4464|consensus 60.0 1.1E+02 0.0023 31.1 10.6 115 238-352 109-231 (532)
314 PF09324 DUF1981: Domain of un 59.7 32 0.0007 26.5 5.8 50 182-236 16-65 (86)
315 TIGR00207 fliG flagellar motor 59.3 1.8E+02 0.004 28.4 17.2 20 74-93 31-50 (338)
316 KOG1086|consensus 59.0 2.1E+02 0.0046 29.1 14.7 116 238-356 106-272 (594)
317 PF11791 Aconitase_B_N: Aconit 58.7 40 0.00086 29.2 6.6 47 158-216 80-126 (154)
318 PF08713 DNA_alkylation: DNA a 57.6 1.4E+02 0.003 26.4 14.1 162 79-267 33-196 (213)
319 cd03562 CID CID (CTD-Interacti 57.4 98 0.0021 24.7 8.9 88 153-251 17-104 (114)
320 PF09758 FPL: Uncharacterised 57.4 31 0.00067 29.7 5.8 127 170-299 13-148 (149)
321 cd08050 TAF6 TATA Binding Prot 56.9 44 0.00096 32.8 7.7 100 146-256 183-298 (343)
322 KOG1087|consensus 56.0 41 0.00089 34.5 7.4 73 227-300 39-112 (470)
323 PF06012 DUF908: Domain of Unk 55.7 73 0.0016 31.0 8.9 56 249-304 242-301 (329)
324 KOG2676|consensus 55.5 12 0.00026 36.9 3.3 64 204-267 376-441 (478)
325 KOG2933|consensus 55.2 98 0.0021 30.1 9.3 111 185-302 90-201 (334)
326 KOG1832|consensus 55.2 1.1E+02 0.0023 34.1 10.4 220 44-279 240-491 (1516)
327 PF12031 DUF3518: Domain of un 54.7 31 0.00067 32.3 5.7 82 198-280 138-228 (257)
328 KOG4464|consensus 54.7 2.5E+02 0.0054 28.6 15.6 82 196-280 109-199 (532)
329 PF10274 ParcG: Parkin co-regu 54.4 1.6E+02 0.0035 26.3 10.8 78 184-263 39-117 (183)
330 PF13001 Ecm29: Proteasome sta 54.2 36 0.00079 35.2 6.9 163 87-256 259-444 (501)
331 PF13001 Ecm29: Proteasome sta 53.9 73 0.0016 33.0 9.0 81 135-218 364-448 (501)
332 KOG2549|consensus 52.6 3E+02 0.0065 28.9 12.9 133 76-212 200-369 (576)
333 PF08216 CTNNBL: Catenin-beta- 51.3 18 0.00039 29.5 3.2 41 203-244 65-105 (108)
334 KOG1822|consensus 51.1 75 0.0016 37.9 9.0 112 142-256 877-989 (2067)
335 PF10257 RAI16-like: Retinoic 51.0 2.5E+02 0.0055 27.6 12.7 120 176-302 2-157 (353)
336 PF11707 Npa1: Ribosome 60S bi 50.0 2.5E+02 0.0054 27.2 20.4 179 154-352 39-240 (330)
337 KOG3533|consensus 47.7 1.5E+02 0.0033 34.5 10.3 136 135-280 1229-1387(2706)
338 PF03130 HEAT_PBS: PBS lyase H 47.4 9.5 0.00021 22.6 0.8 26 157-193 1-26 (27)
339 PF08767 CRM1_C: CRM1 C termin 47.3 2.7E+02 0.0059 26.9 12.2 159 116-276 43-219 (319)
340 PF04510 DUF577: Family of unk 46.4 2.1E+02 0.0046 25.3 10.0 101 185-292 5-108 (174)
341 PLN03076 ARF guanine nucleotid 46.2 1.7E+02 0.0036 35.4 11.1 137 152-298 1148-1297(1780)
342 PF11791 Aconitase_B_N: Aconit 45.5 1.5E+02 0.0032 25.7 8.0 29 141-169 92-122 (154)
343 KOG1949|consensus 45.5 2.8E+02 0.0061 30.2 11.5 142 147-300 180-331 (1005)
344 PF08713 DNA_alkylation: DNA a 44.7 61 0.0013 28.8 6.1 100 120-227 86-198 (213)
345 PF11935 DUF3453: Domain of un 44.2 1.8E+02 0.0039 26.9 9.2 78 145-222 47-154 (239)
346 KOG1993|consensus 44.0 4.8E+02 0.011 28.8 16.3 218 75-300 414-644 (978)
347 PF07923 N1221: N1221-like pro 43.9 45 0.00097 31.9 5.3 53 142-194 61-127 (293)
348 PF06685 DUF1186: Protein of u 43.4 2.8E+02 0.0062 26.0 14.2 116 140-272 72-201 (249)
349 KOG0392|consensus 42.9 77 0.0017 36.4 7.3 107 143-255 818-925 (1549)
350 smart00802 UME Domain in UVSB 42.4 1.7E+02 0.0038 23.6 7.7 69 183-256 11-84 (107)
351 PLN03205 ATR interacting prote 42.3 3.9E+02 0.0084 27.2 11.7 136 143-279 369-546 (652)
352 PF14726 RTTN_N: Rotatin, an a 42.1 1.8E+02 0.0038 23.2 8.4 65 227-295 31-95 (98)
353 smart00567 EZ_HEAT E-Z type HE 40.8 46 0.001 19.7 3.2 18 199-218 2-19 (30)
354 PF04499 SAPS: SIT4 phosphatas 40.8 93 0.002 32.1 7.3 79 212-303 16-95 (475)
355 PF12463 DUF3689: Protein of u 40.7 3.5E+02 0.0075 26.2 12.1 97 140-236 94-199 (303)
356 PF11864 DUF3384: Domain of un 40.2 4.2E+02 0.0091 27.0 18.7 172 114-302 4-208 (464)
357 PF11894 DUF3414: Protein of u 39.9 1.1E+02 0.0024 36.7 8.7 61 153-213 576-639 (1691)
358 KOG4524|consensus 38.9 1.6E+02 0.0034 33.0 8.7 94 183-279 803-900 (1014)
359 PF12074 DUF3554: Domain of un 38.5 3.7E+02 0.008 25.9 15.6 213 82-306 4-241 (339)
360 PF10257 RAI16-like: Retinoic 38.2 4E+02 0.0086 26.2 12.4 133 139-274 7-178 (353)
361 PF12030 DUF3517: Domain of un 38.2 4E+02 0.0087 26.2 14.4 19 336-354 317-335 (337)
362 PF11865 DUF3385: Domain of un 37.2 2.7E+02 0.0059 24.0 9.9 138 97-254 9-156 (160)
363 PF09758 FPL: Uncharacterised 37.0 82 0.0018 27.2 5.3 87 214-302 14-103 (149)
364 PF08064 UME: UME (NUC010) dom 36.8 2.2E+02 0.0047 22.8 7.9 69 183-256 11-84 (107)
365 KOG1788|consensus 36.7 80 0.0017 35.8 6.1 81 219-299 901-981 (2799)
366 KOG2149|consensus 36.5 3.4E+02 0.0073 27.3 10.1 116 184-306 59-176 (393)
367 KOG2073|consensus 36.5 6.4E+02 0.014 28.1 13.1 139 142-280 191-377 (838)
368 PF07923 N1221: N1221-like pro 36.1 77 0.0017 30.3 5.6 54 227-280 61-128 (293)
369 PF14663 RasGEF_N_2: Rapamycin 35.9 2.4E+02 0.0052 22.9 10.4 41 226-267 8-48 (115)
370 PRK05686 fliG flagellar motor 35.6 4.3E+02 0.0092 25.8 15.2 20 74-93 34-53 (339)
371 KOG1992|consensus 35.5 6.6E+02 0.014 27.9 19.8 261 43-306 118-441 (960)
372 COG1536 FliG Flagellar motor s 34.0 4.7E+02 0.01 25.7 18.3 68 224-294 200-285 (339)
373 PF12783 Sec7_N: Guanine nucle 33.9 3E+02 0.0065 23.5 11.4 101 199-303 37-149 (168)
374 PF12612 TFCD_C: Tubulin foldi 33.0 2.6E+02 0.0057 24.7 8.2 67 230-301 11-98 (193)
375 PF08389 Xpo1: Exportin 1-like 32.4 1.2E+02 0.0026 24.7 5.7 61 228-295 84-148 (148)
376 KOG0889|consensus 31.5 5.6E+02 0.012 33.1 12.4 160 140-303 1125-1309(3550)
377 PF12074 DUF3554: Domain of un 31.4 1.3E+02 0.0028 29.1 6.4 76 114-194 176-255 (339)
378 COG5095 TAF6 Transcription ini 30.7 5.1E+02 0.011 25.3 9.8 100 149-259 206-320 (450)
379 PF01465 GRIP: GRIP domain; I 30.3 1.4E+02 0.0029 20.3 4.5 35 145-179 11-45 (46)
380 PF05327 RRN3: RNA polymerase 29.8 6.8E+02 0.015 26.3 16.7 132 78-218 9-159 (563)
381 cd06561 AlkD_like A new struct 29.7 2.2E+02 0.0048 24.7 7.1 78 145-229 109-186 (197)
382 KOG1788|consensus 28.9 7.8E+02 0.017 28.6 11.8 144 183-338 466-615 (2799)
383 PF12054 DUF3535: Domain of un 27.2 6.8E+02 0.015 25.5 12.8 176 119-302 109-344 (441)
384 KOG1525|consensus 27.2 3.4E+02 0.0073 31.6 9.4 161 85-255 242-405 (1266)
385 KOG4524|consensus 27.2 5.6E+02 0.012 28.8 10.6 81 113-194 816-900 (1014)
386 PF09324 DUF1981: Domain of un 26.7 2.1E+02 0.0045 21.9 5.6 40 265-306 14-53 (86)
387 PF09450 DUF2019: Domain of un 25.9 64 0.0014 26.2 2.6 23 142-164 48-70 (106)
388 PF14225 MOR2-PAG1_C: Cell mor 25.8 5.7E+02 0.012 24.1 14.4 142 141-303 60-220 (262)
389 PF14631 FancD2: Fanconi anaem 25.6 5.1E+02 0.011 30.7 10.6 98 149-254 443-541 (1426)
390 PF12783 Sec7_N: Guanine nucle 25.5 4.2E+02 0.0092 22.5 13.0 111 155-267 36-158 (168)
391 PF01417 ENTH: ENTH domain; I 25.3 2.8E+02 0.0061 22.5 6.6 97 243-349 20-121 (125)
392 KOG1992|consensus 25.0 9.9E+02 0.021 26.6 16.7 140 143-300 4-155 (960)
393 KOG0803|consensus 25.0 1.2E+03 0.026 27.5 16.3 70 100-171 43-113 (1312)
394 KOG1791|consensus 24.9 5.3E+02 0.011 30.7 10.2 188 136-328 1434-1641(1758)
395 PF12055 DUF3536: Domain of un 24.0 6.5E+02 0.014 24.1 10.7 58 90-147 29-105 (285)
396 PF01417 ENTH: ENTH domain; I 24.0 3.9E+02 0.0085 21.6 9.6 94 199-298 18-119 (125)
397 PF14631 FancD2: Fanconi anaem 23.7 3.2E+02 0.007 32.3 8.6 70 233-309 442-511 (1426)
398 smart00755 Grip golgin-97, Ran 22.8 2.3E+02 0.0049 19.3 4.5 35 145-180 10-44 (46)
399 PF03810 IBN_N: Importin-beta 22.8 1.7E+02 0.0037 21.1 4.4 32 141-172 14-47 (77)
400 PF10273 WGG: Pre-rRNA-process 22.6 2.1E+02 0.0044 21.9 4.8 43 53-107 16-62 (82)
401 smart00087 PTH Parathyroid hor 22.4 65 0.0014 20.8 1.6 15 78-92 19-33 (36)
402 PF08620 RPAP1_C: RPAP1-like, 21.7 1.4E+02 0.0031 22.5 3.6 29 143-171 41-69 (73)
403 PF07539 DRIM: Down-regulated 21.6 1.2E+02 0.0025 25.9 3.5 79 143-236 19-98 (141)
404 smart00582 RPR domain present 20.4 3.5E+02 0.0075 21.6 6.1 61 146-217 5-65 (121)
405 cd03562 CID CID (CTD-Interacti 20.2 4.4E+02 0.0096 20.8 6.9 86 197-295 18-103 (114)
406 cd00183 TFIIS_I N-terminal dom 20.1 3.7E+02 0.0081 19.9 7.5 51 112-166 18-69 (76)
407 PF07571 DUF1546: Protein of u 20.0 3.5E+02 0.0075 21.0 5.7 71 238-313 18-88 (92)
No 1
>KOG2160|consensus
Probab=100.00 E-value=3.8e-41 Score=318.95 Aligned_cols=309 Identities=29% Similarity=0.359 Sum_probs=262.0
Q ss_pred CCCCCCCCHHHHHHHHhhcC--CCCCCCCCC------cccccCCCCHHhHHHHHHHHHhhc---CCHHHHH-------HH
Q psy14164 41 RQPRQPSNLQDLLRYAVEAG--SRSRAQEAP------NINRAASMNEANRGFLLDALNSMM---VNVGAEL-------EK 102 (361)
Q Consensus 41 ~~~~~~~~l~~LL~w~~~~s--~~~~~~~~~------~~~~~~~~s~e~~~~L~eal~~~~---~~~~~~m-------k~ 102 (361)
+..-.|.+|+|++.|++.++ .+...+..- +..+.. -.+|+++|+.++|...+ ++.++.| +.
T Consensus 6 ~~~~~~~~~~gl~~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ke~~k~~~e~~~~~~e~~k~~~~~~~~~~~~~~~ 84 (342)
T KOG2160|consen 6 GSHVRPPNQEGLLEWSLQLSQSLGSRPDIQISGDLGMAEAKLK-DEKEDRKWLQELMQAHTEDQKDFVEDMKVISDVMSM 84 (342)
T ss_pred cccccCccccchhhcccccccccCCCchhhhccchhhhhhhcc-CcccchHHHHHHHHHhhhhhhhhcccchhHHHHHHh
Confidence 34668899999999999998 322211100 001111 11889999999998886 3333333 33
Q ss_pred -HHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHh
Q psy14164 103 -IIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQ 181 (361)
Q Consensus 103 -~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~ 181 (361)
....++.++.+.++|+.||++|+++||+||||++|++.||+.+++.+|++++..||+.|+|+||+++||||.+|+.|++
T Consensus 85 ~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E 164 (342)
T KOG2160|consen 85 IPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIE 164 (342)
T ss_pred hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3344455667789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc--CCHHHHHHHHHHHHHHhcCCch
Q psy14164 182 TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS--KKEKLVIKSCFLIACLCTDNNQ 259 (361)
Q Consensus 182 ~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s--~~~~v~~kA~~ll~~L~~~~~~ 259 (361)
.|+++.|+..|+++.+..+|++|+||||+++|++++++..|...+|+..|+.+|++ .+.++|+||++++++|+.++.+
T Consensus 165 ~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 165 LGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred cccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 99999999999988888999999999999999999999999999999999999998 6899999999999999999888
Q ss_pred HHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHHhhcChhhhHHHHHH
Q psy14164 260 VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEY 339 (361)
Q Consensus 260 ~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~ 339 (361)
....+...++...+..+..+. +.++++.++.++..++..-+... +|..+-..+.+.|+++++.+..|...+.+++|
T Consensus 245 ~~d~~~~~~f~~~~~~l~~~l---~~~~~e~~l~~~l~~l~~~~~~~-~~~~~~~~l~e~l~~~~q~~~~~~~~~~e~~l 320 (342)
T KOG2160|consen 245 DEDIASSLGFQRVLENLISSL---DFEVNEAALTALLSLLSELSTRK-ELFVSLLNLEELLKSLIQIISDHAALEEERQL 320 (342)
T ss_pred hhhHHHHhhhhHHHHHHhhcc---chhhhHHHHHHHHHHHHHHhhcc-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999988 99999999999999987654333 45566667888899888888778788889999
Q ss_pred HHHHHHHhcCCCCCc
Q psy14164 340 VNSVLTEVFEEDSPE 354 (361)
Q Consensus 340 ~~~il~~~f~~~~~~ 354 (361)
+...++.||.++..+
T Consensus 321 ~~~l~~~~~e~~~~~ 335 (342)
T KOG2160|consen 321 VNSLWEICGEVPSIL 335 (342)
T ss_pred HHHHHHHhcccHHHH
Confidence 999999999877643
No 2
>KOG0166|consensus
Probab=100.00 E-value=7e-32 Score=268.28 Aligned_cols=261 Identities=16% Similarity=0.215 Sum_probs=224.3
Q ss_pred HHHHhhc-----CCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhcCc-ccHHHHHHCCCHHHHHHhhcCCCHHHH
Q psy14164 87 DALNSMM-----VNVGAELEKIIKTLKENQ--DQKDICIGALDNLSDYICSI-DYANDFLKMGGLPVLQPLLEGSDPELR 158 (361)
Q Consensus 87 eal~~~~-----~~~~~~mk~~l~~L~~~~--~~~~~~~~Al~~L~~lve~i-dna~~~~~~Gg~~~Lv~LL~s~~~~vr 158 (361)
.+|+.++ ..+.+.++.++.+|..-- .+.+.+..|+++|.|+.+.. +.-..+++.|++|.|+.+|.++++.++
T Consensus 217 W~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~ 296 (514)
T KOG0166|consen 217 WTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVV 296 (514)
T ss_pred HHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccc
Confidence 4477776 245678888888876433 45688999999999999654 445678899999999999999999999
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC
Q psy14164 159 WRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK 238 (361)
Q Consensus 159 ~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~ 238 (361)
.+|++++||++++++.+++.+++.|++|.|..++...+...+|+.|+|+||||++|++...++++++|.+|.|+++|++.
T Consensus 297 ~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ 376 (514)
T KOG0166|consen 297 TPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA 376 (514)
T ss_pred cHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc
Confidence 99999999999999999999999999999999999656668999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHH
Q psy14164 239 KEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLK 317 (361)
Q Consensus 239 ~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~ 317 (361)
++++|++|+|+|+|++.+ .+++..++++.|+|+++|.+|... |.++...++.+|.+|.+........-. ..+.
T Consensus 377 ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~---D~~ii~v~Ld~l~nil~~~e~~~~~~~---n~~~ 450 (514)
T KOG0166|consen 377 EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCP---DVKIILVALDGLENILKVGEAEKNRGT---NPLA 450 (514)
T ss_pred chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCC---ChHHHHHHHHHHHHHHHHHHHhccccc---cHHH
Confidence 999999999999999987 778999999999999999999888 999999999999999986643221000 1223
Q ss_pred HHHH-----HHHHhhcChhhhHHHHHHHHHHHHHhcCCCCCc
Q psy14164 318 FKLN-----FIKEKHAGNEVYHKELEYVNSVLTEVFEEDSPE 354 (361)
Q Consensus 318 ~~Le-----~~~~~l~~~~e~~~e~~~~~~il~~~f~~~~~~ 354 (361)
..+| +.++.+|.| ++.++|+.|..|+++||++++++
T Consensus 451 ~~IEe~ggldkiE~LQ~h-en~~Iy~~A~~II~~yf~~e~~~ 491 (514)
T KOG0166|consen 451 IMIEEAGGLDKIENLQSH-ENEEIYKKAYKIIDTYFSEEDDE 491 (514)
T ss_pred HHHHHccChhHHHHhhcc-ccHHHHHHHHHHHHHhcCCCccc
Confidence 3444 457788877 78999999999999999987554
No 3
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.97 E-value=4.5e-31 Score=247.12 Aligned_cols=264 Identities=16% Similarity=0.228 Sum_probs=224.0
Q ss_pred HHHHHH---HHhhc-----CCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhcCcccH-HHHHHCCCHHHHHHhhc
Q psy14164 83 GFLLDA---LNSMM-----VNVGAELEKIIKTLKENQ--DQKDICIGALDNLSDYICSIDYA-NDFLKMGGLPVLQPLLE 151 (361)
Q Consensus 83 ~~L~ea---l~~~~-----~~~~~~mk~~l~~L~~~~--~~~~~~~~Al~~L~~lve~idna-~~~~~~Gg~~~Lv~LL~ 151 (361)
..++++ |+.+. +++..-|.+++.+|..-- .+.+...+|++++.++++-...+ ..+...|..+.|+.+|.
T Consensus 216 smlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs 295 (526)
T COG5064 216 SMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLS 295 (526)
T ss_pred HHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhc
Confidence 555555 67776 455778888888876533 45689999999999999754433 55778898999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHH
Q psy14164 152 GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVL 231 (361)
Q Consensus 152 s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~L 231 (361)
|++..|+.+|++.+||++++++.+++.++++|+++.+..+|++ +...+|+.|||.||||+.|+....+++++.+.+|+|
T Consensus 296 ~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~-~ke~irKEaCWTiSNITAGnteqiqavid~nliPpL 374 (526)
T COG5064 296 HESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSS-PKENIRKEACWTISNITAGNTEQIQAVIDANLIPPL 374 (526)
T ss_pred CccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcC-hhhhhhhhhheeecccccCCHHHHHHHHhcccchHH
Confidence 9999999999999999999999999999999999999999998 456999999999999999999999999999999999
Q ss_pred HHhhccCCHHHHHHHHHHHHHHhcC---CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHH-
Q psy14164 232 LRCIQSKKEKLVIKSCFLIACLCTD---NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQS- 307 (361)
Q Consensus 232 v~lL~s~~~~v~~kA~~ll~~L~~~---~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~- 307 (361)
+++|.+.+.++|++|||+|+|..++ .|+..++++++|+|++|+.+|... +..+.+.+|.++.+++......-.
T Consensus 375 i~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~---dNkiiev~LD~~eniLk~Ge~d~~~ 451 (526)
T COG5064 375 IHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVV---DNKIIEVALDAIENILKVGEQDRLR 451 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhcc---CccchhhhHHHHHHHHhhhhHHHHh
Confidence 9999999999999999999999987 578999999999999999999998 999999999999999988753221
Q ss_pred hhccCcchHHHHHH-----HHHHhhcChhhhHHHHHHHHHHHHHhcCCCC
Q psy14164 308 LCRLEPLNLKFKLN-----FIKEKHAGNEVYHKELEYVNSVLTEVFEEDS 352 (361)
Q Consensus 308 ~~~~~~l~l~~~Le-----~~~~~l~~~~e~~~e~~~~~~il~~~f~~~~ 352 (361)
...+.+ ....+++ +.+..+|.. .+.++|+++++|+++||+++|
T Consensus 452 ~~~nin-~ya~~vE~Aggmd~I~~~Q~s-~n~~iy~KAYsIIe~fFgeeD 499 (526)
T COG5064 452 YGKNIN-IYAVYVEKAGGMDAIHGLQDS-VNRTIYDKAYSIIEKFFGEED 499 (526)
T ss_pred ccCCcc-HHHHHHHhcccHHHHHHhhhc-cccHHHHHHHHHHHHHcccch
Confidence 122221 2233344 345566644 788999999999999999887
No 4
>KOG0166|consensus
Probab=99.88 E-value=8.8e-22 Score=196.32 Aligned_cols=201 Identities=17% Similarity=0.329 Sum_probs=173.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhc-CcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHH
Q psy14164 101 EKIIKTLKENQDQKDICIGALDNLSDYIC-SIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI 179 (361)
Q Consensus 101 k~~l~~L~~~~~~~~~~~~Al~~L~~lve-~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v 179 (361)
...++.|.. .....-+..|.+.|-++.. ..+..+.++..|++|.++.||.|++..|++.|+|+|||++...|.+++.+
T Consensus 112 ~~lV~~l~~-~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~v 190 (514)
T KOG0166|consen 112 PRLVEFLSR-DDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYV 190 (514)
T ss_pred HHHHHHHcc-CCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHH
Confidence 344444443 2345668888888888764 44566789999999999999999999999999999999999999999999
Q ss_pred HhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc
Q psy14164 180 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVREN-EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN 258 (361)
Q Consensus 180 ~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~-~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~ 258 (361)
+++|++++|+.++.........+.+.|+|||+|||. |+..-.. -...+|.|..+++++|..|...|||+|++|+.+.+
T Consensus 191 l~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~-v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~n 269 (514)
T KOG0166|consen 191 LSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDV-VAPILPALLRLLHSTDEEVLTDACWALSYLTDGSN 269 (514)
T ss_pred HhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Confidence 999999999999997554579999999999999996 3332122 25789999999999999999999999999999999
Q ss_pred hHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHH
Q psy14164 259 QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQ 306 (361)
Q Consensus 259 ~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~ 306 (361)
+..+.+++.|+++.|+.+|.+. ...++..||+++.+|+.++....
T Consensus 270 e~iq~vi~~gvv~~LV~lL~~~---~~~v~~PaLRaiGNIvtG~d~QT 314 (514)
T KOG0166|consen 270 EKIQMVIDAGVVPRLVDLLGHS---SPKVVTPALRAIGNIVTGSDEQT 314 (514)
T ss_pred HHHHHHHHccchHHHHHHHcCC---CcccccHHHhhccceeeccHHHH
Confidence 9999999999999999999999 88999999999999999887544
No 5
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.86 E-value=2.9e-21 Score=181.44 Aligned_cols=245 Identities=15% Similarity=0.231 Sum_probs=183.8
Q ss_pred cccCCCCHHhHHHHHHHHHhhcCCHHHHHHHHHHH----HhcCCCCHHH-----------------------HHHHHHHH
Q psy14164 72 NRAASMNEANRGFLLDALNSMMVNVGAELEKIIKT----LKENQDQKDI-----------------------CIGALDNL 124 (361)
Q Consensus 72 ~~~~~~s~e~~~~L~eal~~~~~~~~~~mk~~l~~----L~~~~~~~~~-----------------------~~~Al~~L 124 (361)
+..-||.+.-...|....++++.||.+.--.+... |+......-+ +.+|.++|
T Consensus 60 ss~i~meqq~~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWal 139 (526)
T COG5064 60 SSFIPMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWAL 139 (526)
T ss_pred hccCchhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHH
Confidence 34447777766677888888887776644444333 2222111111 12233333
Q ss_pred HHhhcCc-ccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCC-CHHHHH
Q psy14164 125 SDYICSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS-NTTVQV 202 (361)
Q Consensus 125 ~~lve~i-dna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~-~~~v~~ 202 (361)
-....-. +....++..|++|.++++|.+++.+||.+|.|+|||++...+.|++.++++|++.+|+.+|.+.. +..+.+
T Consensus 140 TNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlR 219 (526)
T COG5064 140 TNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLR 219 (526)
T ss_pred hhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHH
Confidence 3322111 11123567899999999999999999999999999999999999999999999999999998643 357889
Q ss_pred HHHHHHHHHhcCC-hhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCC
Q psy14164 203 KSLYAVSCLVREN-EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIED 281 (361)
Q Consensus 203 ~Al~ALS~l~r~~-~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~ 281 (361)
.+.|.|||+|||. |+.-...+ .-.+|.|..++.+.|..+...|||+|++|..+..+-.+.+++.|+.+.|+++|.++
T Consensus 220 n~TWtLSNlcRGknP~P~w~~i-sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~- 297 (526)
T COG5064 220 NATWTLSNLCRGKNPPPDWSNI-SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE- 297 (526)
T ss_pred HhHHHHHHhhCCCCCCCchHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc-
Confidence 9999999999994 33322232 35799999999999999999999999999998888999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhcChH---HHHhhccCcchHHHHHH
Q psy14164 282 ALDTEMNEHLLSALASLIKDSPE---AQSLCRLEPLNLKFKLN 321 (361)
Q Consensus 282 ~~d~~~~e~al~aL~~L~~~~~~---~~~~~~~~~l~l~~~Le 321 (361)
+..++..+++.+.+|+.++.. .+-.|+... .|..+|.
T Consensus 298 --sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~-a~~~lLs 337 (526)
T COG5064 298 --SAKIQTPALRSVGNIVTGSDDQTQVIINCGALK-AFRSLLS 337 (526)
T ss_pred --cccccCHHHHhhcCeeecCccceehheecccHH-HHHHHhc
Confidence 999999999999999998753 333454332 4444444
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.83 E-value=9.9e-19 Score=196.60 Aligned_cols=184 Identities=13% Similarity=0.142 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhcc
Q psy14164 115 DICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH 194 (361)
Q Consensus 115 ~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~ 194 (361)
..+..+.+.|..++.++.+...|...|++++||.||.+.+.++|..++|+|.+++.+++..++.+.+.|++|.|+++|.+
T Consensus 378 ~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s 457 (2102)
T PLN03200 378 LVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL 457 (2102)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC
Confidence 34577788888888888888999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHH
Q psy14164 195 DSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMC 274 (361)
Q Consensus 195 ~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv 274 (361)
.+..+++.|+|+|++++.+++.+...++++||+|.|+++|.+++.++|..|+|+|+||+...++.+..+.+.|++++|+
T Consensus 458 -~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV 536 (2102)
T PLN03200 458 -SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALL 536 (2102)
T ss_pred -CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHH
Confidence 4679999999999999999999999999999999999999999999999999999999986656666666889999999
Q ss_pred HhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164 275 VLIDIEDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 275 ~lL~~~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
++|.++ +.+.++.|+++|.+++...
T Consensus 537 ~LL~sg---d~~~q~~Aa~AL~nLi~~~ 561 (2102)
T PLN03200 537 WLLKNG---GPKGQEIAAKTLTKLVRTA 561 (2102)
T ss_pred HHHhCC---CHHHHHHHHHHHHHHHhcc
Confidence 999998 9999999999999997544
No 7
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.80 E-value=2.1e-17 Score=185.97 Aligned_cols=189 Identities=15% Similarity=0.090 Sum_probs=164.7
Q ss_pred CHHHHHHHHHHHHHhhcC-cccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHh
Q psy14164 113 QKDICIGALDNLSDYICS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 191 (361)
Q Consensus 113 ~~~~~~~Al~~L~~lve~-idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~L 191 (361)
+.+.+..+...|.+++.. .+....+...||+|+|+.+|.+++..+|..|+|+|++++.+|+.++..+++.|++|+|+++
T Consensus 417 ~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~L 496 (2102)
T PLN03200 417 TADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQL 496 (2102)
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 458899999999999965 5667889999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc-h-----------
Q psy14164 192 IEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN-Q----------- 259 (361)
Q Consensus 192 L~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~-~----------- 259 (361)
|.+ ++..+++.|+|+|+|++.+.+..+..+.++|++++|+++|++++.++|..|+|+|.+|+.... .
T Consensus 497 L~s-~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLls 575 (2102)
T PLN03200 497 LET-GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLG 575 (2102)
T ss_pred HcC-CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcC
Confidence 997 577999999999999999765555556578999999999999999999999999999974311 0
Q ss_pred ----H---------------------HHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHH
Q psy14164 260 ----V---------------------KQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEA 305 (361)
Q Consensus 260 ----~---------------------~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~ 305 (361)
. .+.....|+++.|+++|+++ +..+++.|.++|.++...+++.
T Consensus 576 dd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg---s~~ikk~Aa~iLsnL~a~~~d~ 643 (2102)
T PLN03200 576 DLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS---KEETQEKAASVLADIFSSRQDL 643 (2102)
T ss_pred CChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCChHH
Confidence 0 11112468999999999999 9999999999999999887654
No 8
>PF08609 Fes1: Nucleotide exchange factor Fes1; InterPro: IPR013918 Fes1 is a cytosolic homologue of Sls1, an ER protein which has nucleotide exchange factor activity. Fes1 in yeast has been shown to bind to the molecular chaperone Hsp70 and has adenyl-nucleotide exchange factor activity [].
Probab=99.69 E-value=5.3e-17 Score=128.27 Aligned_cols=89 Identities=24% Similarity=0.369 Sum_probs=74.1
Q ss_pred CCCHHHHHHHHhhcCCCCCCCCCCcccccCCCCHHhHHHHHHHHHhhc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy14164 46 PSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMM--VNVGAELEKIIKTLKENQDQKDICIGALDN 123 (361)
Q Consensus 46 ~~~l~~LL~w~~~~s~~~~~~~~~~~~~~~~~s~e~~~~L~eal~~~~--~~~~~~mk~~l~~L~~~~~~~~~~~~Al~~ 123 (361)
+++|+|||||||+||.++..... ....+..+++|+|..++|..++ ++|+++||+++.+|.+++.+.++|+.||++
T Consensus 2 ~~~l~~LLkWsI~ns~~~~~~~~---~~~~~~~~~~~~l~~~~L~~l~~~~sda~lMK~a~~vl~~~~~t~edk~~Ald~ 78 (92)
T PF08609_consen 2 DPNLNGLLKWSIENSTTSASDAP---PSAEQPDEERRQLDPEALDALFGGPSDAELMKEAMEVLEDPEVTLEDKLIALDN 78 (92)
T ss_pred CHHHHHHHHHHHHcCCCCccccc---cCcCCchhhhhhccHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 46899999999999954433222 1122233467999999999998 899999999999999999999999999999
Q ss_pred HHHhhcCcccHHHH
Q psy14164 124 LSDYICSIDYANDF 137 (361)
Q Consensus 124 L~~lve~idna~~~ 137 (361)
|++|||+|||||++
T Consensus 79 le~LVE~IDNANnl 92 (92)
T PF08609_consen 79 LEELVENIDNANNL 92 (92)
T ss_pred HHHHHHcccccccC
Confidence 99999999999974
No 9
>KOG4224|consensus
Probab=99.69 E-value=1.8e-15 Score=143.79 Aligned_cols=193 Identities=19% Similarity=0.305 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcC--hHHHHHHh
Q psy14164 114 KDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD--FLNLLLTS 191 (361)
Q Consensus 114 ~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g--~l~~Ll~L 191 (361)
...+-.|.+.|..+.+.-+|.+.++..||+|.||.+|.+.+.++|..++.+|++++- ....+..+.+.| ++|.|++|
T Consensus 181 irvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~L 259 (550)
T KOG4224|consen 181 IRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDL 259 (550)
T ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHH
Confidence 456778899999999999999999999999999999999999999999999999985 466788888888 99999999
Q ss_pred hccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHH
Q psy14164 192 IEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE 271 (361)
Q Consensus 192 L~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~ 271 (361)
.++ +++.++-.|..||.+++.+.. -+..+.++|++|.++++|+++..++....+++|.|+.- .|-....+++.|++.
T Consensus 260 md~-~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisi-hplNe~lI~dagfl~ 336 (550)
T KOG4224|consen 260 MDD-GSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISI-HPLNEVLIADAGFLR 336 (550)
T ss_pred HhC-CChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccc-ccCcccceecccchh
Confidence 997 567999999999999998655 45778899999999999999999999999999999876 455666788999999
Q ss_pred HHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccC
Q psy14164 272 QMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLE 312 (361)
Q Consensus 272 ~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~ 312 (361)
+|+.+|..+ ++.+++-+|..+|++++..+...+...+..
T Consensus 337 pLVrlL~~~--dnEeiqchAvstLrnLAasse~n~~~i~es 375 (550)
T KOG4224|consen 337 PLVRLLRAG--DNEEIQCHAVSTLRNLAASSEHNVSVIRES 375 (550)
T ss_pred HHHHHHhcC--CchhhhhhHHHHHHHHhhhhhhhhHHHhhc
Confidence 999999987 134599999999999998775544444333
No 10
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.63 E-value=1.1e-14 Score=118.79 Aligned_cols=119 Identities=20% Similarity=0.297 Sum_probs=111.8
Q ss_pred HHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCC
Q psy14164 136 DFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVREN 215 (361)
Q Consensus 136 ~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~ 215 (361)
.|++.|+++.|+.+|.+++..+|..|+++|++++.++|.....+++.|++|.|+++|.+ ++..++..|+|+|++++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCc
Confidence 36788999999999999999999999999999999999999999999999999999997 57899999999999999998
Q ss_pred hhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhc
Q psy14164 216 EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT 255 (361)
Q Consensus 216 ~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~ 255 (361)
+.....+...|+++.|+++|+..+.+++..|+|++.+|+.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 8888888889999999999999999999999999999863
No 11
>KOG4224|consensus
Probab=99.54 E-value=3.1e-13 Score=128.62 Aligned_cols=291 Identities=17% Similarity=0.211 Sum_probs=212.3
Q ss_pred cccccCCCccccccccCCCCCCCCCCCCCCCHHH-HHHHHhhcCCCCCCCCCC----cccccCCCCHHhHHHHHHHHHhh
Q psy14164 18 RLEDSQAQPNLAIEYAPNQDIPARQPRQPSNLQD-LLRYAVEAGSRSRAQEAP----NINRAASMNEANRGFLLDALNSM 92 (361)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-LL~w~~~~s~~~~~~~~~----~~~~~~~~s~e~~~~L~eal~~~ 92 (361)
.+--||+-.-++= .+..+|+. ..+|..| ||++....-.....-++. =.+-.+.-+..-+..-..|++.+
T Consensus 162 kiA~sGaL~pltr-Lakskdir-----vqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnI 235 (550)
T KOG4224|consen 162 KIARSGALEPLTR-LAKSKDIR-----VQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNI 235 (550)
T ss_pred hhhhccchhhhHh-hcccchhh-----HHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhh
Confidence 3456777666554 88888887 5666554 445443321111110100 00001111222222223333333
Q ss_pred cC----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHH
Q psy14164 93 MV----------NVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAA 162 (361)
Q Consensus 93 ~~----------~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa 162 (361)
.+ .+.+++...+..+.+ .++..|..|--+|..+..+..+...++..|++|.+++||+++.-.+-....
T Consensus 236 aVd~~~Rk~Laqaep~lv~~Lv~Lmd~--~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasV 313 (550)
T KOG4224|consen 236 AVDRRARKILAQAEPKLVPALVDLMDD--GSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASV 313 (550)
T ss_pred hhhHHHHHHHHhcccchHHHHHHHHhC--CChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHH
Confidence 22 344455555554444 345788888889999999999999999999999999999999998888999
Q ss_pred HHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHH
Q psy14164 163 ETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKL 242 (361)
Q Consensus 163 ~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v 242 (361)
.||.|++- .|-+.-.+++.|.+.+|+++|+-..+++++-.|...|-+++..+......|++.|.++.++.++.+.+-.+
T Consensus 314 aCIrnisi-hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsv 392 (550)
T KOG4224|consen 314 ACIRNISI-HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSV 392 (550)
T ss_pred HHHhhccc-ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhH
Confidence 99998874 56666778999999999999997677789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCh---HHHHhhccCcchHHHH
Q psy14164 243 VIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP---EAQSLCRLEPLNLKFK 319 (361)
Q Consensus 243 ~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~---~~~~~~~~~~l~l~~~ 319 (361)
|.+...+|+-|+-+ ...+.++.+.|+++.|+.++.+. +.+++..+..+|.++..+-. ..++...+|..++...
T Consensus 393 qseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~---s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~ 468 (550)
T KOG4224|consen 393 QSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSE---SEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGR 468 (550)
T ss_pred HHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCcc---chhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHH
Confidence 99888888887764 46889999999999999999988 99999999999999987543 2333345555444444
Q ss_pred HH
Q psy14164 320 LN 321 (361)
Q Consensus 320 Le 321 (361)
|-
T Consensus 469 L~ 470 (550)
T KOG4224|consen 469 LA 470 (550)
T ss_pred HH
Confidence 43
No 12
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.52 E-value=3.5e-13 Score=109.89 Aligned_cols=118 Identities=22% Similarity=0.374 Sum_probs=110.6
Q ss_pred HHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q psy14164 178 FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN 257 (361)
Q Consensus 178 ~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~ 257 (361)
.+++.|+++.|++++.+ .+..++..++++|++++.+++.....+++.|+++.|+.+|.+++.+++..|+|++++|+...
T Consensus 2 ~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSS-SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 36789999999999996 46799999999999999998999999999999999999999999999999999999999988
Q ss_pred chHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164 258 NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 299 (361)
Q Consensus 258 ~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~ 299 (361)
+.....+.+.|+++.++.+|..+ +..+++.++.+|.+|+
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~---~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSS---NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcC---CHHHHHHHHHHHHHhh
Confidence 88888899999999999999998 9999999999999886
No 13
>KOG2160|consensus
Probab=99.34 E-value=3.5e-10 Score=108.34 Aligned_cols=184 Identities=17% Similarity=0.253 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccC
Q psy14164 116 ICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD 195 (361)
Q Consensus 116 ~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~ 195 (361)
.....-+...+.++......++..+ ++....-..+.+.+=+..|..-|-..+.+ -.+...++..|++.+++.++.+
T Consensus 60 ~~~~~~e~~k~~~~~~~~~~~~~~~--~~~~~~~~~s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~- 135 (342)
T KOG2160|consen 60 LMQAHTEDQKDFVEDMKVISDVMSM--IPIVILNSSSVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLEN- 135 (342)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHh--hhhhccCcccCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcC-
Confidence 3344444455666666666666666 22222222456778889999999999965 4456678999999999999987
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHH
Q psy14164 196 SNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMC 274 (361)
Q Consensus 196 ~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~-~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv 274 (361)
++..+|+.|+|.|+.++++||..+..|++.||++.|+..|.++ +..+++||.++|++|+.+++.....+...++...|.
T Consensus 136 ~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~ 215 (342)
T KOG2160|consen 136 SDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLR 215 (342)
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHH
Confidence 6789999999999999999999999999999999999999865 789999999999999999999999999999999999
Q ss_pred HhccCCCCCChhHHHHHHHHHHHHHhcChH
Q psy14164 275 VLIDIEDALDTEMNEHLLSALASLIKDSPE 304 (361)
Q Consensus 275 ~lL~~~~~~d~~~~e~al~aL~~L~~~~~~ 304 (361)
..|.++ +.+..++.+++..+..+++..+.
T Consensus 216 ~vl~~~-~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 216 DVLQSN-NTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHHHcC-CcchHHHHHHHHHHHHHHHhhhh
Confidence 999983 22788999999999999987654
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.33 E-value=4.5e-10 Score=115.24 Aligned_cols=185 Identities=15% Similarity=0.240 Sum_probs=161.6
Q ss_pred CHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhh
Q psy14164 113 QKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI 192 (361)
Q Consensus 113 ~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL 192 (361)
+.+....+++.|..+.+..+-... ..+..+.|...|.|+++.||..+++.|+++++++....+.+.+.++++.++.++
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L 128 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL 128 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH
Confidence 345666777777777776654443 234567888899999999999999999999999999888999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHH
Q psy14164 193 EHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ 272 (361)
Q Consensus 193 ~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~ 272 (361)
.+ ++..|.+.|+.+|++++.+ +.....+++.+++..|..++...+..+|.++..++..++..+++....+.+.|+++.
T Consensus 129 ~~-~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ 206 (503)
T PF10508_consen 129 RD-PDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDL 206 (503)
T ss_pred cC-CcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHH
Confidence 86 6889999999999999984 566777888999999999999888899999999999999999999999999999999
Q ss_pred HHHhccCCCCCChhHHHHHHHHHHHHHhcChHH
Q psy14164 273 MCVLIDIEDALDTEMNEHLLSALASLIKDSPEA 305 (361)
Q Consensus 273 Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~ 305 (361)
++..|.++ |.-++..++..|..|+. ++..
T Consensus 207 ll~eL~~d---DiLvqlnalell~~La~-~~~g 235 (503)
T PF10508_consen 207 LLKELDSD---DILVQLNALELLSELAE-TPHG 235 (503)
T ss_pred HHHHhcCc---cHHHHHHHHHHHHHHHc-ChhH
Confidence 99999998 99999999999999998 5443
No 15
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.30 E-value=5.4e-10 Score=117.47 Aligned_cols=220 Identities=12% Similarity=0.129 Sum_probs=173.2
Q ss_pred HHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCC
Q psy14164 118 IGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSN 197 (361)
Q Consensus 118 ~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~ 197 (361)
..++..|..+.++..+...+++-|+++.|+++|.+++.++...+..+|..++-. .+++..+.+.|++++|++++.+ .+
T Consensus 267 rv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s-~~ 344 (708)
T PF05804_consen 267 RVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPS-EN 344 (708)
T ss_pred HHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcC-CC
Confidence 345666888999999999999999999999999999999999999999999964 5589999999999999999997 46
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhc
Q psy14164 198 TTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLI 277 (361)
Q Consensus 198 ~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL 277 (361)
..++..++.+|.|++-+ +.....+++.|.+|.|+.+|.+++ .+.-+..++++|+. ++..+..+...++++.++++|
T Consensus 345 ~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~L 420 (708)
T PF05804_consen 345 EDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSM-DDEARSMFAYTDCIPQLMQML 420 (708)
T ss_pred HHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHH
Confidence 78999999999999974 556889999999999999998654 44557888888876 567889999999999999986
Q ss_pred cCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHH-----------HHHhhcChhhh-HH-HHHHHHHHH
Q psy14164 278 DIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNF-----------IKEKHAGNEVY-HK-ELEYVNSVL 344 (361)
Q Consensus 278 ~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~-----------~~~~l~~~~e~-~~-e~~~~~~il 344 (361)
-..+ +..+...++.++.+++...+.+...|... +|..+++. .++++..|+.. +. -..|+..|+
T Consensus 421 l~~~--~~~v~~eliaL~iNLa~~~rnaqlm~~g~--gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~ 496 (708)
T PF05804_consen 421 LENS--EEEVQLELIALLINLALNKRNAQLMCEGN--GLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLA 496 (708)
T ss_pred HhCC--CccccHHHHHHHHHHhcCHHHHHHHHhcC--cHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 5531 55666667888888888877776667443 34445542 35566556422 22 245777777
Q ss_pred HHh
Q psy14164 345 TEV 347 (361)
Q Consensus 345 ~~~ 347 (361)
..+
T Consensus 497 ~~v 499 (708)
T PF05804_consen 497 KIV 499 (708)
T ss_pred HHh
Confidence 654
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.19 E-value=3.8e-09 Score=98.96 Aligned_cols=196 Identities=19% Similarity=0.223 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHH
Q psy14164 97 GAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ 176 (361)
Q Consensus 97 ~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q 176 (361)
.+.+++.+..|... .+...+..|+-.+.......-+..-+.+.||++.+..+|.++++.+|..|+++|.|++.+ .+.|
T Consensus 11 ~~~l~~Ll~lL~~t-~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~en~ 88 (254)
T PF04826_consen 11 AQELQKLLCLLEST-EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DENQ 88 (254)
T ss_pred HHHHHHHHHHHhcC-CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hhhH
Confidence 55668888888763 344556666666666655556667788999999999999999999999999999999865 5556
Q ss_pred HHHHhcChHHHHHHhhcc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhc
Q psy14164 177 NFIIQTDFLNLLLTSIEH-DSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT 255 (361)
Q Consensus 177 ~~v~~~g~l~~Ll~LL~~-~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~ 255 (361)
..+-. .++.+++...+ ..+..++..++.+|.+|+..+. ....+ .+.++.++++|.+++.++|..+..++.+|+.
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~-~~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND-YHHML--ANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc-hhhhH--HhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 65532 57777775443 3456899999999999987543 23333 4689999999999999999999999999976
Q ss_pred CCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164 256 DNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 256 ~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
+|...+.++..+++..++.++... .+.++...++..+.+|...-
T Consensus 164 -np~~~~~Ll~~q~~~~~~~Lf~~~--~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 164 -NPDMTRELLSAQVLSSFLSLFNSS--ESKENLLRVLTFFENINENI 207 (254)
T ss_pred -CHHHHHHHHhccchhHHHHHHccC--CccHHHHHHHHHHHHHHHhh
Confidence 677888888889999999999875 25677888888888886543
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.16 E-value=1.9e-09 Score=100.91 Aligned_cols=157 Identities=20% Similarity=0.246 Sum_probs=125.4
Q ss_pred HCCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChh
Q psy14164 139 KMGGLPVLQPLLEG-SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEE 217 (361)
Q Consensus 139 ~~Gg~~~Lv~LL~s-~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~ 217 (361)
..+.++.|+.+|++ .++.++..|..++|+.+ ..|..|+.+.+.|+++.+..+|.. +++.+|.+|++||.|++.+.+
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~aL~Nls~~~e- 86 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLND-PNPSVREKALNALNNLSVNDE- 86 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcCC-CChHHHHHHHHHHHhcCCChh-
Confidence 34568999999984 68999999999999986 578999999999999999999997 688999999999999987543
Q ss_pred hHHHHHhhCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHH
Q psy14164 218 CLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALA 296 (361)
Q Consensus 218 ~~~~f~~~ggi~~Lv~lL~s~-~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~ 296 (361)
.+..+ +..+-..+-..+.++ +..+|..+..+|.+|+..+ +....+. +.++.++.+|.++ +..++.+++.+|.
T Consensus 87 n~~~I-k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l~--~~i~~ll~LL~~G---~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 87 NQEQI-KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHMLA--NYIPDLLSLLSSG---SEKTKVQVLKVLV 159 (254)
T ss_pred hHHHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhHH--hhHHHHHHHHHcC---ChHHHHHHHHHHH
Confidence 33433 333333334444444 7899999999999997643 3344443 4799999999998 9999999999999
Q ss_pred HHHhcChHH
Q psy14164 297 SLIKDSPEA 305 (361)
Q Consensus 297 ~L~~~~~~~ 305 (361)
+|+......
T Consensus 160 nLS~np~~~ 168 (254)
T PF04826_consen 160 NLSENPDMT 168 (254)
T ss_pred HhccCHHHH
Confidence 999766543
No 18
>KOG4199|consensus
Probab=99.15 E-value=2.4e-08 Score=94.88 Aligned_cols=219 Identities=14% Similarity=0.220 Sum_probs=168.1
Q ss_pred hHHHHHHH--HHhhcCCH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCc----------ccHHHHHHCCCHHH
Q psy14164 81 NRGFLLDA--LNSMMVNV---GAELEKIIKTLKENQDQKDICIGALDNLSDYICSI----------DYANDFLKMGGLPV 145 (361)
Q Consensus 81 ~~~~L~ea--l~~~~~~~---~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~i----------dna~~~~~~Gg~~~ 145 (361)
-.+|++.| +.++...+ ...++-.+.+|.....+ ...-.+.+.|..|+-+- ..|+.|.+.|++..
T Consensus 167 ~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~-~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~ 245 (461)
T KOG4199|consen 167 TLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKT-RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTA 245 (461)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCcc-HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHH
Confidence 35777776 33332111 22233333455554444 44455667777766443 45788999999999
Q ss_pred HHHhhcC-CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHH---HHHHHHHHHHHHhcCChhhHHH
Q psy14164 146 LQPLLEG-SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTT---VQVKSLYAVSCLVRENEECLKE 221 (361)
Q Consensus 146 Lv~LL~s-~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~---v~~~Al~ALS~l~r~~~~~~~~ 221 (361)
|+..|.. -++++...++-+|+.++-+++.|+. +.+.|++..|++++.+..+.. ..+.+++.|+.++. +......
T Consensus 246 L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~-I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~ 323 (461)
T KOG4199|consen 246 LTEALQAGIDPDSLVSLSTTLKALAVRDEICKS-IAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKST 323 (461)
T ss_pred HHHHHHccCCccHHHHHHHHHHHHHHHHHHHHH-HHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHH
Confidence 9999875 5689999999999999998888875 789999999999998643333 44677888888764 6777889
Q ss_pred HHhhCcHHHHHHhhc--cCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164 222 FIKRDGFSVLLRCIQ--SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 299 (361)
Q Consensus 222 f~~~ggi~~Lv~lL~--s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~ 299 (361)
+++.||.+.++.++. ++++.|-..++.+|+-|+-..|+....+++.|.-...++-++.. -....++..+.+++.+|+
T Consensus 324 IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkah-P~~a~vQrnac~~IRNiv 402 (461)
T KOG4199|consen 324 IVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAH-PVAAQVQRNACNMIRNIV 402 (461)
T ss_pred HHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhC-cHHHHHHHHHHHHHHHHH
Confidence 999999999999874 56899999999999999999999999999999999999988764 124679999999999999
Q ss_pred hcCh
Q psy14164 300 KDSP 303 (361)
Q Consensus 300 ~~~~ 303 (361)
..+.
T Consensus 403 ~rs~ 406 (461)
T KOG4199|consen 403 VRSA 406 (461)
T ss_pred Hhhh
Confidence 8774
No 19
>KOG4199|consensus
Probab=99.12 E-value=6.4e-09 Score=98.67 Aligned_cols=180 Identities=13% Similarity=0.201 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcC-CCHHHH---HHHHHHHHHHhhcCHHHHHHHHhcChHHHHHH
Q psy14164 115 DICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEG-SDPELR---WRAAETVADIVQNNPFSQNFIIQTDFLNLLLT 190 (361)
Q Consensus 115 ~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s-~~~~vr---~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~ 190 (361)
+....++..|..+.-.-+....+...||+..|++++.+ .+..+| ..++..|..++ +++.+...+++.|+++.++.
T Consensus 257 ~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~ 335 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIIT 335 (461)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHH
Confidence 44455555555554344556678889999999999976 445555 55666677676 57779999999999999999
Q ss_pred hhc-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC--CHHHHHHHHHHHHHHhcCCchHHHHHHhC
Q psy14164 191 SIE-HDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNNQVKQVLLSM 267 (361)
Q Consensus 191 LL~-~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~--~~~v~~kA~~ll~~L~~~~~~~~~~l~~~ 267 (361)
++. +..++.|...++-+||-+|--.|..-..|++.||-...++.|+.. ...+|+.|||+|.|++..+.+++..++..
T Consensus 336 l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~ 415 (461)
T KOG4199|consen 336 LALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN 415 (461)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc
Confidence 764 557789999999999999988888888999999999999999865 57899999999999999988899999876
Q ss_pred CcHHHHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164 268 GMVEQMCVLIDIEDALDTEMNEHLLSALASLI 299 (361)
Q Consensus 268 g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~ 299 (361)
| ++.|+..-+.. +......+-.+|.-|-
T Consensus 416 G-iE~Li~~A~~~---h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 416 G-IEKLIRTAKAN---HETCEAAAKAALRDLG 443 (461)
T ss_pred c-HHHHHHHHHhc---CccHHHHHHHHHHhcC
Confidence 6 56777776666 6677766666666554
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.07 E-value=4.6e-08 Score=100.53 Aligned_cols=166 Identities=14% Similarity=0.158 Sum_probs=147.4
Q ss_pred CCHHHHHHHHHHHHHhhcCcccH-HHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHH
Q psy14164 112 DQKDICIGALDNLSDYICSIDYA-NDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLT 190 (361)
Q Consensus 112 ~~~~~~~~Al~~L~~lve~idna-~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~ 190 (361)
.+...|.-++..|..++...+.+ ..+...+.++.++.+|.+++..|...|+.+|..++.+.+.. +.+++.+.++.|..
T Consensus 89 ~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~ 167 (503)
T PF10508_consen 89 PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKS 167 (503)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHH
Confidence 34578888999999988776654 44566788999999999999999999999999999876655 45778888999999
Q ss_pred hhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcH
Q psy14164 191 SIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV 270 (361)
Q Consensus 191 LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i 270 (361)
++.+ ++..+|.++...+..++..++.....+...|.++.++..|.++|.-+|..|+-+++.|+. .++..+++.+.|++
T Consensus 168 l~~~-~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~ 245 (503)
T PF10508_consen 168 LMSQ-SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIF 245 (503)
T ss_pred HHhc-cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHH
Confidence 9986 466899999999999999999999999999999999999999999999999999999998 78889999999999
Q ss_pred HHHHHhccCC
Q psy14164 271 EQMCVLIDIE 280 (361)
Q Consensus 271 ~~Lv~lL~~~ 280 (361)
+.|+++|...
T Consensus 246 ~~L~~~l~~~ 255 (503)
T PF10508_consen 246 DKLSNLLQDS 255 (503)
T ss_pred HHHHHHHhcc
Confidence 9999999875
No 21
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.07 E-value=3.3e-08 Score=104.11 Aligned_cols=179 Identities=13% Similarity=0.157 Sum_probs=147.3
Q ss_pred CHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhh
Q psy14164 113 QKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI 192 (361)
Q Consensus 113 ~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL 192 (361)
+.+.++.++.-|..|.-..+|+..+.+.|.++.|++++.+++.+++..|+++|.|++. ++..+..+++.|++|.|+.+|
T Consensus 303 n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL 381 (708)
T PF05804_consen 303 NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELL 381 (708)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHh
Confidence 4567777888888888888899999999999999999999999999999999999995 567899999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhc-cCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHH
Q psy14164 193 EHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQ-SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE 271 (361)
Q Consensus 193 ~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~-s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~ 271 (361)
..+ ..+..++..|.+++. .+.....|...+.++.|+++|- .++.++...+.+++.||+.. +...+.+.+.|+++
T Consensus 382 ~d~---~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-~rnaqlm~~g~gL~ 456 (708)
T PF05804_consen 382 KDP---NFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN-KRNAQLMCEGNGLQ 456 (708)
T ss_pred CCC---chHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC-HHHHHHHHhcCcHH
Confidence 853 355667888888887 4567788888899999999754 56788899999999999885 45667888888899
Q ss_pred HHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164 272 QMCVLIDIEDALDTEMNEHLLSALASLIKDSP 303 (361)
Q Consensus 272 ~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~ 303 (361)
.|+...-.. ...+ .+..|.+++++.+
T Consensus 457 ~L~~ra~~~---~D~l---LlKlIRNiS~h~~ 482 (708)
T PF05804_consen 457 SLMKRALKT---RDPL---LLKLIRNISQHDG 482 (708)
T ss_pred HHHHHHHhc---ccHH---HHHHHHHHHhcCc
Confidence 999876544 2222 4467888888774
No 22
>KOG1293|consensus
Probab=98.92 E-value=3.4e-08 Score=100.55 Aligned_cols=172 Identities=16% Similarity=0.146 Sum_probs=136.8
Q ss_pred cccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHH
Q psy14164 131 IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSC 210 (361)
Q Consensus 131 idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~ 210 (361)
++++..|-..-....+..+..+.+..++.+|+.++-+++..-...+.-+-...+..+|++++. +++..|...++.||.|
T Consensus 367 i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~-dp~~~i~~~~lgai~N 445 (678)
T KOG1293|consen 367 ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM-DPEIMIMGITLGAICN 445 (678)
T ss_pred hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh-CcchhHHHHHHHHHHH
Confidence 566666554433444444556788999999999999888655544444445578999999996 4777999999999999
Q ss_pred HhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHH-HHHhCCcHHHHHHhccCCCCCChhHHH
Q psy14164 211 LVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQ-VLLSMGMVEQMCVLIDIEDALDTEMNE 289 (361)
Q Consensus 211 l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~-~l~~~g~i~~Lv~lL~~~~~~d~~~~e 289 (361)
++..+.+-...|+..||+..|...+.+.++.+|.++.|+++++..+..+... .+...=.-..++.+.+.+ +..++|
T Consensus 446 lVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~---d~~Vqe 522 (678)
T KOG1293|consen 446 LVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP---DWAVQE 522 (678)
T ss_pred HHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC---CHHHHH
Confidence 9999999999999999999999999999999999999999999988554443 333333355666777777 999999
Q ss_pred HHHHHHHHHHhcChHHH
Q psy14164 290 HLLSALASLIKDSPEAQ 306 (361)
Q Consensus 290 ~al~aL~~L~~~~~~~~ 306 (361)
.++..|.+++.++.+.+
T Consensus 523 q~fqllRNl~c~~~~sv 539 (678)
T KOG1293|consen 523 QCFQLLRNLTCNSRKSV 539 (678)
T ss_pred HHHHHHHHhhcCcHHHH
Confidence 99999999998876543
No 23
>KOG1517|consensus
Probab=98.92 E-value=3.5e-08 Score=104.42 Aligned_cols=213 Identities=16% Similarity=0.198 Sum_probs=187.1
Q ss_pred HHHHHHHHhhc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHH-HCCCHHHHHHhhcC
Q psy14164 83 GFLLDALNSMM---------VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFL-KMGGLPVLQPLLEG 152 (361)
Q Consensus 83 ~~L~eal~~~~---------~~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~-~~Gg~~~Lv~LL~s 152 (361)
-|+.|-|.++. ..+.+++--.+++|.+. -.++.||.-|..+++-.-+|-++. ..|.+|.+++||+|
T Consensus 448 ~FFteQLTAFevWLd~gse~r~PPeQLPiVLQVLLSQ----vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS 523 (1387)
T KOG1517|consen 448 PFFTEQLTAFEVWLDYGSESRTPPEQLPIVLQVLLSQ----VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQS 523 (1387)
T ss_pred chHHHHHHHHHHHHHhccccCCChHhcchHHHHHHHH----HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhcc
Confidence 57777766664 45688888999998873 568999999999998888898875 66889999999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccC--CCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHH
Q psy14164 153 SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD--SNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSV 230 (361)
Q Consensus 153 ~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~--~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~ 230 (361)
+-.++|.--+.+-+.|..-+|.||..+++.++-..+++.|... -+++-|.-|++.|+.++++++.++++....+-+..
T Consensus 524 ~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~i 603 (1387)
T KOG1517|consen 524 SARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGI 603 (1387)
T ss_pred chHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHH
Confidence 9999999999999999999999999999999999999999852 24588999999999999999999999999999999
Q ss_pred HHHhhccC-CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164 231 LLRCIQSK-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 231 Lv~lL~s~-~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
..+.|.++ ..-+++-+|-+|.-|..+.++.+=.=++.+..+.|+.+|+.+ -+++|..|+.||..++...
T Consensus 604 Cle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~---vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 604 CLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDP---VPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCc---cHHHHHHHHHHHHHHhccc
Confidence 99999986 689999999999999988777766666778899999999988 8999999999999999863
No 24
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.91 E-value=2.4e-07 Score=89.51 Aligned_cols=188 Identities=16% Similarity=0.255 Sum_probs=139.4
Q ss_pred CCHHHHHHHHHHHHHhhcCc-ccHHHHHHCC------CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcCh
Q psy14164 112 DQKDICIGALDNLSDYICSI-DYANDFLKMG------GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDF 184 (361)
Q Consensus 112 ~~~~~~~~Al~~L~~lve~i-dna~~~~~~G------g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~ 184 (361)
..++...-.|--+.+++.+. .....|.... -+.++++++.+++.-++..|+.+++.+....+....... .+.
T Consensus 69 ~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~ 147 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEA 147 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHH
Confidence 34455666666677776544 4455555522 589999999999999999999999999887766555433 567
Q ss_pred HHHHHHhhccC---CCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhh------cc-CCHHHHHHHHHHHHHHh
Q psy14164 185 LNLLLTSIEHD---SNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCI------QS-KKEKLVIKSCFLIACLC 254 (361)
Q Consensus 185 l~~Ll~LL~~~---~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL------~s-~~~~v~~kA~~ll~~L~ 254 (361)
++.+++.+.+. .+..++.-|+.+|+++.+ .+.....|.+.+|++.|..+| .+ .+..++=.+++++.-|.
T Consensus 148 l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS 226 (312)
T PF03224_consen 148 LPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLS 226 (312)
T ss_dssp HHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh
Confidence 88888887752 233567899999999998 677889999999999999999 22 36899999999999886
Q ss_pred cCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChH
Q psy14164 255 TDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPE 304 (361)
Q Consensus 255 ~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~ 304 (361)
. +++....+.+.++|+.|+++++.. ...++...++.+|.|++...+.
T Consensus 227 F-~~~~~~~~~~~~~i~~L~~i~~~~--~KEKvvRv~la~l~Nl~~~~~~ 273 (312)
T PF03224_consen 227 F-EPEIAEELNKKYLIPLLADILKDS--IKEKVVRVSLAILRNLLSKAPK 273 (312)
T ss_dssp T-SHHHHHHHHTTSHHHHHHHHHHH----SHHHHHHHHHHHHHTTSSSST
T ss_pred c-CHHHHHHHhccchHHHHHHHHHhc--ccchHHHHHHHHHHHHHhccHH
Confidence 6 577888899999999999999875 2678899999999999987763
No 25
>KOG1048|consensus
Probab=98.77 E-value=7.6e-08 Score=99.98 Aligned_cols=196 Identities=17% Similarity=0.223 Sum_probs=149.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccH--HHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHH--H
Q psy14164 100 LEKIIKTLKENQDQKDICIGALDNLSDYICSIDYA--NDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPF--S 175 (361)
Q Consensus 100 mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna--~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~--~ 175 (361)
+.+++..|...... .+..|.--+.-++. .|++ .....+|||+.||.+|.|+..+|+.+||++|-|++-++.. .
T Consensus 235 lpe~i~mL~~q~~~--~qsnaaaylQHlcf-gd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 235 LPEVISMLMSQDPS--VQSNAAAYLQHLCF-GDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred cHHHHHHHhccChh--hhHHHHHHHHHHHh-hhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 45666777654332 33333333444443 3333 4678999999999999999999999999999999987665 7
Q ss_pred HHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC--------------CHH
Q psy14164 176 QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK--------------KEK 241 (361)
Q Consensus 176 q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~--------------~~~ 241 (361)
.-.+.+.+++|.++++|.+..|.++++.....|.||.-. ...+..+-..+++.|.+-+-.+ +..
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~--D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN--DALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch--hHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccce
Confidence 888999999999999999877889999999999999864 3445555567777776654321 357
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHhC-CcHHHHHHhccCC---CCCChhHHHHHHHHHHHHHh
Q psy14164 242 LVIKSCFLIACLCTDNNQVKQVLLSM-GMVEQMCVLIDIE---DALDTEMNEHLLSALASLIK 300 (361)
Q Consensus 242 v~~kA~~ll~~L~~~~~~~~~~l~~~-g~i~~Lv~lL~~~---~~~d~~~~e~al~aL~~L~~ 300 (361)
+-..++++|.|+.+...+.++.+.++ |.|..|+..+.+- +.-|.+..|.++..|.++.-
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSY 452 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSY 452 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCc
Confidence 88899999999999888899999876 7799998887732 23367788999888888763
No 26
>KOG0168|consensus
Probab=98.77 E-value=3.6e-07 Score=95.27 Aligned_cols=204 Identities=14% Similarity=0.221 Sum_probs=158.8
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHH---HHCCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhh
Q psy14164 95 NVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDF---LKMGGLPVLQPLLEGS-DPELRWRAAETVADIVQ 170 (361)
Q Consensus 95 ~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~---~~~Gg~~~Lv~LL~s~-~~~vr~~Aa~~Lg~iaq 170 (361)
..-.+|++.+.-|...+ ++...+.|+-+|.+++- +.|-..+ ----.+|.|+.||+++ +.+|...||++|.+++.
T Consensus 164 sasSk~kkLL~gL~~~~-Des~Qleal~Elce~L~-mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~e 241 (1051)
T KOG0168|consen 164 SASSKAKKLLQGLQAES-DESQQLEALTELCEMLS-MGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCE 241 (1051)
T ss_pred cchHHHHHHHHhccccC-ChHHHHHHHHHHHHHHh-hcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence 44558899998888854 44555666655555442 2222221 1112478899999985 57999999999999999
Q ss_pred cCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHH
Q psy14164 171 NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLI 250 (361)
Q Consensus 171 nn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll 250 (361)
--|..-..++++++||.|+.-|..-.-..|...++.||=-|.|.++. +++.+||+...+..|.==..-+|++|....
T Consensus 242 vlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDFFSi~aQR~Alaia 318 (1051)
T KOG0168|consen 242 VLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDFFSIHAQRVALAIA 318 (1051)
T ss_pred hccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998666545678999999999999998875 578899999999888777889999999999
Q ss_pred HHHhcC-CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc---ChHHHHh
Q psy14164 251 ACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD---SPEAQSL 308 (361)
Q Consensus 251 ~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~---~~~~~~~ 308 (361)
+|.|.. .++--..+. ..+|.|..+|... |.+..|.++-++..++.. .|+.+++
T Consensus 319 aN~Cksi~sd~f~~v~--ealPlL~~lLs~~---D~k~ies~~ic~~ri~d~f~h~~~kLdq 375 (1051)
T KOG0168|consen 319 ANCCKSIRSDEFHFVM--EALPLLTPLLSYQ---DKKPIESVCICLTRIADGFQHGPDKLDQ 375 (1051)
T ss_pred HHHHhcCCCccchHHH--HHHHHHHHHHhhc---cchhHHHHHHHHHHHHHhcccChHHHHH
Confidence 999987 444444443 5799999999998 999999999999999864 4555544
No 27
>KOG1048|consensus
Probab=98.74 E-value=1.7e-07 Score=97.37 Aligned_cols=198 Identities=17% Similarity=0.212 Sum_probs=146.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChh--hHH
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEE--CLK 220 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~--~~~ 220 (361)
+|..+.+|.|.++.++..|+.-|-.++-.+.+....+-+.|+|+.|+.||.+ ....|++.|++||=|++-+... +.-
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~-~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDH-RNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcC-CcHHHHHHHHHHHHhhhcccCCcccch
Confidence 6778899999999999999999999999999999999999999999999998 5679999999999999998766 788
Q ss_pred HHHhhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCC----CC-------CChhHH
Q psy14164 221 EFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE----DA-------LDTEMN 288 (361)
Q Consensus 221 ~f~~~ggi~~Lv~lL~s-~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~----~~-------~d~~~~ 288 (361)
++.++||++.++++|.. .|..|++.++.++.||.+. +..+..++. ..+..|-+.+-.+ .+ .+.++-
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceee
Confidence 89999999999999997 5999999999999999775 445555543 3445554444333 00 124566
Q ss_pred HHHHHHHHHHHhcChHH---HHhhccCcchHHHHHHHHHHhhcChhhh-HHHHHHHHHHHHHh
Q psy14164 289 EHLLSALASLIKDSPEA---QSLCRLEPLNLKFKLNFIKEKHAGNEVY-HKELEYVNSVLTEV 347 (361)
Q Consensus 289 e~al~aL~~L~~~~~~~---~~~~~~~~l~l~~~Le~~~~~l~~~~e~-~~e~~~~~~il~~~ 347 (361)
..+..+|.++...+.++ ...|. ++.+.|=..++..-+...+ +--++-|..|+.+.
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~----GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNL 450 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECD----GLIDALLFSIQTAIQKSDLDSKSVENCVCILRNL 450 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhcc----chHHHHHHHHHHHHHhccccchhHHHHHHHHhhc
Confidence 78888999998866554 44552 3444444444422111111 12355555555543
No 28
>PRK09687 putative lyase; Provisional
Probab=98.63 E-value=9.3e-07 Score=84.19 Aligned_cols=169 Identities=13% Similarity=0.155 Sum_probs=105.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHH
Q psy14164 101 EKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFII 180 (361)
Q Consensus 101 k~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~ 180 (361)
+..+..|.+ .+...+..|+..|..+-. -..++.+..+++++++.+|..|+++||.+-.... .
T Consensus 26 ~~L~~~L~d--~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~----- 87 (280)
T PRK09687 26 DELFRLLDD--HNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C----- 87 (280)
T ss_pred HHHHHHHhC--CCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c-----
Confidence 334444544 344677777777765421 1246777888889999999999999998743111 1
Q ss_pred hcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhh----HHH----------------HH------hhCcHHHHHHh
Q psy14164 181 QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEEC----LKE----------------FI------KRDGFSVLLRC 234 (361)
Q Consensus 181 ~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~----~~~----------------f~------~~ggi~~Lv~l 234 (361)
....++.|..++.++++..||..|+.+|+.++...... ... +. +...++.|+.+
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~ 167 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINL 167 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 12357778877666678889999999998875432200 000 00 11235666666
Q ss_pred hccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164 235 IQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 299 (361)
Q Consensus 235 L~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~ 299 (361)
|.+++..||..|+++|..+...++ .+++.|+.+|... +.++|..|..+|..+-
T Consensus 168 L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~---~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 168 LKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK---NEEIRIEAIIGLALRK 220 (280)
T ss_pred hcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC---ChHHHHHHHHHHHccC
Confidence 766666777777777766622222 3566677777776 7778887777776643
No 29
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.60 E-value=2.1e-05 Score=78.73 Aligned_cols=198 Identities=16% Similarity=0.175 Sum_probs=140.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcc-cHHHHHHC-----CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCH
Q psy14164 100 LEKIIKTLKENQDQKDICIGALDNLSDYICSID-YANDFLKM-----GGLPVLQPLLEGSDPELRWRAAETVADIVQNNP 173 (361)
Q Consensus 100 mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~id-na~~~~~~-----Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~ 173 (361)
.+-.+..+.. ...++...-.|--+.+++.... -+..|++. .-+.+++++|.+++.-+...|+.+|+.++...+
T Consensus 55 ~~~~l~ll~~-~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~ 133 (429)
T cd00256 55 VKTFVNLLSQ-IDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGL 133 (429)
T ss_pred HHHHHHHHhc-cCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCc
Confidence 3333444443 3334555555666666665422 23556654 468889999999999999999999999987544
Q ss_pred HHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC--CHHHHHHHHHHHH
Q psy14164 174 FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIA 251 (361)
Q Consensus 174 ~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~--~~~v~~kA~~ll~ 251 (361)
.........-.+..|...|.+..+...+.-|+.+++.+.+. +..+..|.+.+|++.|+.+|+.. +..++=++++++.
T Consensus 134 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW 212 (429)
T cd00256 134 AKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW 212 (429)
T ss_pred cccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 32221111113445566666433456777888999999995 55668899999999999999863 6789999999999
Q ss_pred HHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164 252 CLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 252 ~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
-|..+. +....+...++|+.|+++++.. .-.++...++.+|.|++..+
T Consensus 213 lLSF~~-~~~~~~~~~~~i~~l~~i~k~s--~KEKvvRv~l~~l~Nll~~~ 260 (429)
T cd00256 213 LLTFNP-HAAEVLKRLSLIQDLSDILKES--TKEKVIRIVLAIFRNLISKR 260 (429)
T ss_pred HHhccH-HHHHhhccccHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhcc
Confidence 887754 4666777889999999999875 25678888899999999754
No 30
>KOG2122|consensus
Probab=98.53 E-value=3.3e-06 Score=92.31 Aligned_cols=229 Identities=14% Similarity=0.188 Sum_probs=167.1
Q ss_pred CHHhHHHHHHHHHhhc---CCH--HHHHHHHHHHHhcCC-------------------CCHHHHH-HHHHHHHHhhcCcc
Q psy14164 78 NEANRGFLLDALNSMM---VNV--GAELEKIIKTLKENQ-------------------DQKDICI-GALDNLSDYICSID 132 (361)
Q Consensus 78 s~e~~~~L~eal~~~~---~~~--~~~mk~~l~~L~~~~-------------------~~~~~~~-~Al~~L~~lve~id 132 (361)
+.|-|+....||.++. +|+ ..+.++++..|.... .+++..+ .|+-.|..+.-+-+
T Consensus 251 ~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEE 330 (2195)
T KOG2122|consen 251 DKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEE 330 (2195)
T ss_pred hHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHH
Confidence 5566777888888886 333 223444444443110 2234444 78888888877778
Q ss_pred cHHHHHHCCCHHHHHHhhcC------------CCHHHHHHHHHHHHHHhhcCHHHHHHHH-hcChHHHHHHhhccCCC--
Q psy14164 133 YANDFLKMGGLPVLQPLLEG------------SDPELRWRAAETVADIVQNNPFSQNFII-QTDFLNLLLTSIEHDSN-- 197 (361)
Q Consensus 133 na~~~~~~Gg~~~Lv~LL~s------------~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~-~~g~l~~Ll~LL~~~~~-- 197 (361)
....+..+||+..|-.||.- .+..+|..|..+|.|++-+...+...+. ..|.+..+|..|.++++
T Consensus 331 hR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL 410 (2195)
T KOG2122|consen 331 HRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEEL 410 (2195)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHH
Confidence 88999999999999887751 1357999999999999877665554443 33667777766665431
Q ss_pred -----------------------------------------HHHHHHHHHHHHHHhcCChhhHHHHHhh-CcHHHHHHhh
Q psy14164 198 -----------------------------------------TTVQVKSLYAVSCLVRENEECLKEFIKR-DGFSVLLRCI 235 (361)
Q Consensus 198 -----------------------------------------~~v~~~Al~ALS~l~r~~~~~~~~f~~~-ggi~~Lv~lL 235 (361)
+...+..++||-||..|+..+...|... |.+..|+..|
T Consensus 411 ~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~L 490 (2195)
T KOG2122|consen 411 LQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTL 490 (2195)
T ss_pred HHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhc
Confidence 1233457888889999988888888875 5689999999
Q ss_pred ccC----CHHHHHHHHHHHHHHhc---CCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHh
Q psy14164 236 QSK----KEKLVIKSCFLIACLCT---DNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSL 308 (361)
Q Consensus 236 ~s~----~~~v~~kA~~ll~~L~~---~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~ 308 (361)
... ..++...|-..|.|..+ .....|+.+.+.+++..|+..|++. .-.+.-+++.+||||...+|...+.
T Consensus 491 SY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~---SLTiVSNaCGTLWNLSAR~p~DQq~ 567 (2195)
T KOG2122|consen 491 SYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH---SLTIVSNACGTLWNLSARSPEDQQM 567 (2195)
T ss_pred cccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc---ceEEeecchhhhhhhhcCCHHHHHH
Confidence 743 56777777777766543 3567899999999999999999998 8889999999999999999876554
Q ss_pred h
Q psy14164 309 C 309 (361)
Q Consensus 309 ~ 309 (361)
.
T Consensus 568 L 568 (2195)
T KOG2122|consen 568 L 568 (2195)
T ss_pred H
Confidence 3
No 31
>KOG4500|consensus
Probab=98.47 E-value=3.5e-06 Score=82.58 Aligned_cols=161 Identities=14% Similarity=0.228 Sum_probs=126.7
Q ss_pred cCCCHHHHHHHHHHHHHHhhcCHHHHHHHH----hcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhC
Q psy14164 151 EGSDPELRWRAAETVADIVQNNPFSQNFII----QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRD 226 (361)
Q Consensus 151 ~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~----~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~g 226 (361)
...+..|+..+..|++.++ .|+..+..|. .+|++.+|.++.++ ++..|......||+|+|..+..++..|...|
T Consensus 52 ~~~~~tv~~~qssC~A~~s-k~ev~r~~F~~~~I~a~~le~Lrq~psS-~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lg 129 (604)
T KOG4500|consen 52 MTASDTVYLFQSSCLADRS-KNEVERSLFRNYCIDAEALELLRQTPSS-PDTEVHEQCFRALGNICYDNNENRAAFFNLG 129 (604)
T ss_pred eeccchhhhhhHHHHHHHh-hhHHHHHHHHHHhhHHHHHHHHHhCCCC-CcccHHHHHHHHHhhhhccCchhHHHHHhcC
Confidence 3457789999999999998 4565555554 45778888888887 4789999999999999999999999999999
Q ss_pred cHHHHHHhhccC-------CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164 227 GFSVLLRCIQSK-------KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 299 (361)
Q Consensus 227 gi~~Lv~lL~s~-------~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~ 299 (361)
|-+.+++.|+.. ..+.-.-++.++.|..-++.+.+..+.+.|+++.|..++--+ -++....|..+-...+++
T Consensus 130 Gaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~-~qNaa~~e~ll~~f~nll 208 (604)
T KOG4500|consen 130 GAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWID-WQNAALTEKLLAPFFNLL 208 (604)
T ss_pred CceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcc-cccHHHHHHHHhccccHH
Confidence 999999888742 347777788889988888899999999999999999887654 125677788888877777
Q ss_pred hcC-hHHHHhhccCcc
Q psy14164 300 KDS-PEAQSLCRLEPL 314 (361)
Q Consensus 300 ~~~-~~~~~~~~~~~l 314 (361)
+.- ......|....+
T Consensus 209 s~~~e~~~~~~~d~sl 224 (604)
T KOG4500|consen 209 SFVCEMLYPFCKDCSL 224 (604)
T ss_pred HHHHHhhhhhhccchH
Confidence 633 223445555443
No 32
>PRK09687 putative lyase; Provisional
Probab=98.46 E-value=7.3e-06 Score=78.10 Aligned_cols=158 Identities=15% Similarity=0.105 Sum_probs=108.9
Q ss_pred CCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHh-hcCCCHHHHHHHHHHHHHHhhc-------------------
Q psy14164 112 DQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPL-LEGSDPELRWRAAETVADIVQN------------------- 171 (361)
Q Consensus 112 ~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~L-L~s~~~~vr~~Aa~~Lg~iaqn------------------- 171 (361)
.+...+..|.+.|.++-.... . ..-.++.|..+ ++.+++.||..|+.+||.+...
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~-~----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~ 140 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKR-C----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDK 140 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCcc-c----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCC
Confidence 345677777777777543111 0 01146777766 6778889999999999987432
Q ss_pred CHHHHHHHHh-------cChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHH
Q psy14164 172 NPFSQNFIIQ-------TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVI 244 (361)
Q Consensus 172 n~~~q~~v~~-------~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~ 244 (361)
++.++..++. ..+++.|+.+|.+ ++..||..|+++|+.+.-+++ ..++.|+.+|.+.+..||.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d-~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~ 210 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKD-PNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRI 210 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcC-CCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHH
Confidence 2233333332 1367888888875 566888888888888722222 3577899999999999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q psy14164 245 KSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK 300 (361)
Q Consensus 245 kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~ 300 (361)
.|++.+..+-. + .+++.|++.|..+ + ++..+..+|..+-.
T Consensus 211 ~A~~aLg~~~~--~---------~av~~Li~~L~~~---~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 211 EAIIGLALRKD--K---------RVLSVLIKELKKG---T--VGDLIIEAAGELGD 250 (280)
T ss_pred HHHHHHHccCC--h---------hHHHHHHHHHcCC---c--hHHHHHHHHHhcCC
Confidence 99999987532 2 5799999999976 4 66677788777663
No 33
>KOG0946|consensus
Probab=98.45 E-value=2.2e-05 Score=81.88 Aligned_cols=203 Identities=18% Similarity=0.203 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcc------c-----------HHHHHHCC-CHHHHHHhhcCCCHHHH
Q psy14164 97 GAELEKIIKTLKENQDQKDICIGALDNLSDYICSID------Y-----------ANDFLKMG-GLPVLQPLLEGSDPELR 158 (361)
Q Consensus 97 ~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~id------n-----------a~~~~~~G-g~~~Lv~LL~s~~~~vr 158 (361)
+..|+-.+.+|...-.+.+....+|+.+.-++..-| + |..|++.- -+..|+..+.+.+-.||
T Consensus 60 a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR 139 (970)
T KOG0946|consen 60 AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVR 139 (970)
T ss_pred HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhh
Confidence 557888888887755666777778888887765443 2 34466654 47788889999999999
Q ss_pred HHHHHHHHHHhhc-CHHHHHHHHhc-ChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhc
Q psy14164 159 WRAAETVADIVQN-NPFSQNFIIQT-DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQ 236 (361)
Q Consensus 159 ~~Aa~~Lg~iaqn-n~~~q~~v~~~-g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~ 236 (361)
..|...|.++..+ -++.|++++.. -++..|+.+|.. ..+-+|-.+++-|+.++++++..++-+.=.|.+..|..++.
T Consensus 140 ~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D-srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIe 218 (970)
T KOG0946|consen 140 LYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD-SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIE 218 (970)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh-hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999998765 45678887766 579999999985 56789999999999999999998888777899999999987
Q ss_pred c----CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCCh------h----HHHHHHHHHHHHHh
Q psy14164 237 S----KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDT------E----MNEHLLSALASLIK 300 (361)
Q Consensus 237 s----~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~------~----~~e~al~aL~~L~~ 300 (361)
. +..-|...+.+++.+|+..+.+....|.+.+.|+.|.++|+.+..+|. . -...+|.++..++.
T Consensus 219 eEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVs 296 (970)
T KOG0946|consen 219 EEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVS 296 (970)
T ss_pred hcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcC
Confidence 4 235788999999999999999999999999999999999988743331 1 12345666666664
No 34
>KOG1293|consensus
Probab=98.42 E-value=3e-05 Score=79.52 Aligned_cols=153 Identities=12% Similarity=0.146 Sum_probs=124.3
Q ss_pred CCHHHHHHHHHHHHHhh---cCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHH
Q psy14164 112 DQKDICIGALDNLSDYI---CSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLL 188 (361)
Q Consensus 112 ~~~~~~~~Al~~L~~lv---e~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~L 188 (361)
.+.+..-+||..+..+. ...++. +-...|..+||++|..|+..|...+..+|.|++-.-...+..|+..|++..|
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg--~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l 466 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTG--LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDIL 466 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcC--CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHH
Confidence 33455555555544443 333333 6667799999999999999999999999999999888889999999999999
Q ss_pred HHhhccCCCHHHHHHHHHHHHHHhcCChhh-HHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhC
Q psy14164 189 LTSIEHDSNTTVQVKSLYAVSCLVRENEEC-LKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSM 267 (361)
Q Consensus 189 l~LL~~~~~~~v~~~Al~ALS~l~r~~~~~-~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~ 267 (361)
.+++.+ .+.++|.+++|+|-++.-+.... +.++...=+...|..+...++..||..+..+++||+.+..+..+.+++.
T Consensus 467 ~s~~~~-~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~ 545 (678)
T KOG1293|consen 467 ESMLTD-PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEK 545 (678)
T ss_pred HHHhcC-CCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHh
Confidence 999996 67899999999999999876543 4455555577788888999999999999999999999877777777754
No 35
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.42 E-value=6.7e-07 Score=59.80 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=37.8
Q ss_pred CHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhc
Q psy14164 172 NPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR 213 (361)
Q Consensus 172 n~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r 213 (361)
||.+++.+++.|++|+|+++|.+ .+..+++.|+|||+||++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~-~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKS-PDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTS-SSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcC-CCHHHHHHHHHHHHHHhC
Confidence 57888999999999999999996 688999999999999985
No 36
>PTZ00429 beta-adaptin; Provisional
Probab=98.33 E-value=0.00015 Score=77.60 Aligned_cols=169 Identities=12% Similarity=0.112 Sum_probs=124.8
Q ss_pred CHHHHHHHHHHHHHhh-cCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHh
Q psy14164 113 QKDICIGALDNLSDYI-CSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 191 (361)
Q Consensus 113 ~~~~~~~Al~~L~~lv-e~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~L 191 (361)
+...|..|+..+..+. .-.|.. -+++-+++++.+++.++|...--.|.+.+..+|+..-. ++..|.+=
T Consensus 45 ~~~~kk~alKkvIa~mt~G~DvS------~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KD 113 (746)
T PTZ00429 45 DSYRKKAAVKRIIANMTMGRDVS------YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQD 113 (746)
T ss_pred CHHHHHHHHHHHHHHHHCCCCch------HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHH
Confidence 4466677776655544 222322 24777888999999999999999999998877764322 45666776
Q ss_pred hccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHH
Q psy14164 192 IEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE 271 (361)
Q Consensus 192 L~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~ 271 (361)
+.+ +++.+|.-|+.++|+|.- +.... -.+..+.++|.+.++-||++|+.++..+...+|+ .+.+.|+++
T Consensus 114 l~d-~Np~IRaLALRtLs~Ir~--~~i~e-----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~ 182 (746)
T PTZ00429 114 TTN-SSPVVRALAVRTMMCIRV--SSVLE-----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKK 182 (746)
T ss_pred cCC-CCHHHHHHHHHHHHcCCc--HHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHH
Confidence 664 678999999999998742 22222 2356788888889999999999999999876664 344568888
Q ss_pred HHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHH
Q psy14164 272 QMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQ 306 (361)
Q Consensus 272 ~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~ 306 (361)
.|.++|... |+.+..+|+.+|..+...+|..+
T Consensus 183 ~L~~LL~D~---dp~Vv~nAl~aL~eI~~~~~~~l 214 (746)
T PTZ00429 183 DLVELLNDN---NPVVASNAAAIVCEVNDYGSEKI 214 (746)
T ss_pred HHHHHhcCC---CccHHHHHHHHHHHHHHhCchhh
Confidence 899998877 89999999999999987766544
No 37
>KOG2171|consensus
Probab=98.31 E-value=7.5e-05 Score=80.81 Aligned_cols=154 Identities=14% Similarity=0.207 Sum_probs=119.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy14164 144 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFI 223 (361)
Q Consensus 144 ~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~ 223 (361)
+.+-.+|+|++..-|.+|+.+|+.++.+.++.-...+. .+++..+..|+. +.+.||..|+.||+-+..+..+-.+...
T Consensus 351 ~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~D-phprVr~AA~naigQ~stdl~p~iqk~~ 428 (1075)
T KOG2171|consen 351 EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLND-PHPRVRYAALNAIGQMSTDLQPEIQKKH 428 (1075)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCC-CCHHHHHHHHHHHHhhhhhhcHHHHHHH
Confidence 33444778999999999999999999987654433222 467777777874 7889999999999999999988888888
Q ss_pred hhCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCCc-h-HHHHHHhCCcHH-HHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164 224 KRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNN-Q-VKQVLLSMGMVE-QMCVLIDIEDALDTEMNEHLLSALASLI 299 (361)
Q Consensus 224 ~~ggi~~Lv~lL~s~-~~~v~~kA~~ll~~L~~~~~-~-~~~~l~~~g~i~-~Lv~lL~~~~~~d~~~~e~al~aL~~L~ 299 (361)
..-.++.|+..+.++ +.+|+..|+.++-++....+ + ...++ .+++. .+..++.++ ...++|.++.+|..++
T Consensus 429 ~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL--d~lm~~~l~~L~~~~---~~~v~e~vvtaIasvA 503 (1075)
T KOG2171|consen 429 HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL--DGLMEKKLLLLLQSS---KPYVQEQAVTAIASVA 503 (1075)
T ss_pred HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH--HHHHHHHHHHHhcCC---chhHHHHHHHHHHHHH
Confidence 788888999999887 68999999999999987633 2 22232 14455 333455555 8899999999999999
Q ss_pred hcChH
Q psy14164 300 KDSPE 304 (361)
Q Consensus 300 ~~~~~ 304 (361)
.....
T Consensus 504 ~AA~~ 508 (1075)
T KOG2171|consen 504 DAAQE 508 (1075)
T ss_pred HHHhh
Confidence 76643
No 38
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.31 E-value=7.2e-06 Score=75.19 Aligned_cols=189 Identities=17% Similarity=0.203 Sum_probs=122.0
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcCc---ccHHHHHHC--CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhc
Q psy14164 108 KENQDQKDICIGALDNLSDYICSI---DYANDFLKM--GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQT 182 (361)
Q Consensus 108 ~~~~~~~~~~~~Al~~L~~lve~i---dna~~~~~~--Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~ 182 (361)
...+.+=+.+..|+..|..++... +....|... ..+..+...+.+....|...|+.+|+.++..-...-+.++ .
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~ 93 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-D 93 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-H
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-H
Confidence 343455688999999999988654 334444321 3345677788888888999999999999976443322222 3
Q ss_pred ChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHH
Q psy14164 183 DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQ 262 (361)
Q Consensus 183 g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~ 262 (361)
..+|.|++.+.+ +...++..|..+|-.|+.+.+.. ..++ ++.+...+.+.+..+|..++.++..++...+....
T Consensus 94 ~~l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~~~-~~~~----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 94 ILLPPLLKKLGD-SKKFIREAANNALDAIIESCSYS-PKIL----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp HHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H---HHH----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred HHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCCcH-HHHH----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence 489999999986 56789999999999999976611 1111 45667788899999999999999998876441111
Q ss_pred HHHh----CCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHH
Q psy14164 263 VLLS----MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQ 306 (361)
Q Consensus 263 ~l~~----~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~ 306 (361)
.+.. ..+++.+..+|... ++++|+.|-.++..+.+..|+..
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~D~---~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLSDA---DPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHTSS----HHHHHHHHHHHHHHHHHH-HHH
T ss_pred hhcccchHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHCCHhh
Confidence 1111 34678888999988 99999999999999987776543
No 39
>KOG2122|consensus
Probab=98.31 E-value=6.6e-06 Score=90.02 Aligned_cols=172 Identities=16% Similarity=0.185 Sum_probs=141.2
Q ss_pred CcccHHHHHHCCCHHHHHHh-hcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhc-ChHHHHHHhhccCC---CHHHHHH-
Q psy14164 130 SIDYANDFLKMGGLPVLQPL-LEGSDPELRWRAAETVADIVQNNPFSQNFIIQT-DFLNLLLTSIEHDS---NTTVQVK- 203 (361)
Q Consensus 130 ~idna~~~~~~Gg~~~Lv~L-L~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~-g~l~~Ll~LL~~~~---~~~v~~~- 203 (361)
++.++..|...|-+..|+.+ |......-....+.+|-|++.+..++...|..- |+|.-|+.+|.-+. ...+...
T Consensus 426 D~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsa 505 (2195)
T KOG2122|consen 426 DSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESA 505 (2195)
T ss_pred cccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcC
Confidence 45667789999999999986 554444455567777778877777777776554 89999999997531 1233333
Q ss_pred --HHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCC
Q psy14164 204 --SLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIED 281 (361)
Q Consensus 204 --Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~ 281 (361)
.+.-+|+++..+++-.+...+++-+..|++.|++.+..|...+|..|+||...+++.++.|.+.|.|..|.+|+++.
T Consensus 506 GGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK- 584 (2195)
T KOG2122|consen 506 GGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK- 584 (2195)
T ss_pred ccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-
Confidence 34456777888888888888999999999999999999999999999999999999999999999999999999998
Q ss_pred CCChhHHHHHHHHHHHHHhcChH
Q psy14164 282 ALDTEMNEHLLSALASLIKDSPE 304 (361)
Q Consensus 282 ~~d~~~~e~al~aL~~L~~~~~~ 304 (361)
+..+.+-+..+|.|++..-|.
T Consensus 585 --hkMIa~GSaaALrNLln~RPA 605 (2195)
T KOG2122|consen 585 --HKMIAMGSAAALRNLLNFRPA 605 (2195)
T ss_pred --hhhhhhhHHHHHHHHhcCCch
Confidence 999999999999999988764
No 40
>KOG0168|consensus
Probab=98.27 E-value=7.1e-05 Score=78.63 Aligned_cols=239 Identities=14% Similarity=0.131 Sum_probs=175.5
Q ss_pred HhcCCCCHHHHHHHHHHHHHhhcCccc-HHHHHHCCCHHHHHH-hhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcCh
Q psy14164 107 LKENQDQKDICIGALDNLSDYICSIDY-ANDFLKMGGLPVLQP-LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDF 184 (361)
Q Consensus 107 L~~~~~~~~~~~~Al~~L~~lve~idn-a~~~~~~Gg~~~Lv~-LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~ 184 (361)
|.+.+...+-...|+.+|-+|+|-.-. ...++..++||.|+. |+.-..-+|-++++.+|-.|.+.+|. +++++|+
T Consensus 219 LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~ 295 (1051)
T KOG0168|consen 219 LLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGA 295 (1051)
T ss_pred HHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhccc
Confidence 333334457788899999999886543 345678899999987 77888999999999999999998875 7899999
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC---CchH
Q psy14164 185 LNLLLTSIEHDSNTTVQVKSLYAVSCLVREN-EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD---NNQV 260 (361)
Q Consensus 185 l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~-~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~---~~~~ 260 (361)
+...+..|+= -+..++++|+...+|+|..- +....-| ...+|.|..+|+..|.++...+|-++..++.+ .++.
T Consensus 296 l~a~LsylDF-FSi~aQR~AlaiaaN~Cksi~sd~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~k 372 (1051)
T KOG0168|consen 296 LSAVLSYLDF-FSIHAQRVALAIAANCCKSIRSDEFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDK 372 (1051)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHH
Confidence 9999998874 34689999999999999874 3344444 46899999999999999999999999999875 6778
Q ss_pred HHHHHhCCcHHHHHHhccCC-CCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHHhhc------Chh--
Q psy14164 261 KQVLLSMGMVEQMCVLIDIE-DALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHA------GNE-- 331 (361)
Q Consensus 261 ~~~l~~~g~i~~Lv~lL~~~-~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~------~~~-- 331 (361)
.+.+.+.|+|....+||... ..-+..+..-..++|..+..+||...+.-.. +++.+.|.+.+.--. .++
T Consensus 373 Ldql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k--~~I~~~L~~il~g~s~s~nas~~~~l 450 (1051)
T KOG0168|consen 373 LDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLK--LDIADTLKRILQGYSKSANASLHELL 450 (1051)
T ss_pred HHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHH--hhHHHHHHHHHhccCcCccccccccc
Confidence 88999999999999999876 1112345566788888888888865432211 233344444432111 011
Q ss_pred --hhHHHHHHHHHHHHHhcCCCCC
Q psy14164 332 --VYHKELEYVNSVLTEVFEEDSP 353 (361)
Q Consensus 332 --e~~~e~~~~~~il~~~f~~~~~ 353 (361)
-.++.|+....|++.+|--+.+
T Consensus 451 ~r~Pnel~e~~sl~~eLlp~~p~e 474 (1051)
T KOG0168|consen 451 SRSPNELYELTSLIIELLPCLPVE 474 (1051)
T ss_pred ccCcHHHHHHHHHHheeecCCccc
Confidence 2355677777777766665554
No 41
>PF05536 Neurochondrin: Neurochondrin
Probab=98.24 E-value=0.00024 Score=73.80 Aligned_cols=197 Identities=18% Similarity=0.164 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHH----HHHHCCCHHHHHHhhcC-------CCHHHHHHHHHHH
Q psy14164 97 GAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYAN----DFLKMGGLPVLQPLLEG-------SDPELRWRAAETV 165 (361)
Q Consensus 97 ~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~----~~~~~Gg~~~Lv~LL~s-------~~~~vr~~Aa~~L 165 (361)
...+++++..|.... ++.|..+|--+..++...|... .+.+.=|+..|-+||++ +....+.-|..+|
T Consensus 4 ~~~l~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL 81 (543)
T PF05536_consen 4 SASLEKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVL 81 (543)
T ss_pred hHHHHHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 456899999999864 6899999999999998766321 24455568999999987 5578899999999
Q ss_pred HHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHH
Q psy14164 166 ADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIK 245 (361)
Q Consensus 166 g~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~k 245 (361)
+..++ .|.....--=.+-+|.|+..+.+..+..+...|+.+|.+++ .++.+.+.|++.|+++.|.+.+.+ ....+..
T Consensus 82 ~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~ 158 (543)
T PF05536_consen 82 AAFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEI 158 (543)
T ss_pred HHHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHH
Confidence 99998 45443111112579999999987555588999999999999 689999999999999999999987 6677888
Q ss_pred HHHHHHHHhcCCc-h----HHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164 246 SCFLIACLCTDNN-Q----VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP 303 (361)
Q Consensus 246 A~~ll~~L~~~~~-~----~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~ 303 (361)
|..++.+++.... + ....+ ..++..+....... ....+-.++..|..++...|
T Consensus 159 Al~lL~~Lls~~~~~~~~~~~~~l--~~il~~La~~fs~~---~~~~kfell~~L~~~L~~~~ 216 (543)
T PF05536_consen 159 ALNLLLNLLSRLGQKSWAEDSQLL--HSILPSLARDFSSF---HGEDKFELLEFLSAFLPRSP 216 (543)
T ss_pred HHHHHHHHHHhcchhhhhhhHHHH--HHHHHHHHHHHHhh---ccchHHHHHHHHHHhcCcCC
Confidence 9999999887532 1 11111 14566677777766 56666677888888887774
No 42
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.16 E-value=8.9e-06 Score=62.87 Aligned_cols=86 Identities=19% Similarity=0.357 Sum_probs=68.8
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy14164 143 LPVLQPLL-EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKE 221 (361)
Q Consensus 143 ~~~Lv~LL-~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~ 221 (361)
++.|++.| +++++.+|..|+++||.+- ++ .++|.|+.++.+ ++..||..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d-~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLKD-EDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTS-SSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcC-CCHHHHHHHHHHHHHhC---------
Confidence 57899988 8999999999999999442 11 469999999975 78899999999999872
Q ss_pred HHhhCcHHHHHHhhccC-CHHHHHHHHHHHH
Q psy14164 222 FIKRDGFSVLLRCIQSK-KEKLVIKSCFLIA 251 (361)
Q Consensus 222 f~~~ggi~~Lv~lL~s~-~~~v~~kA~~ll~ 251 (361)
....++.|.+++.++ +..+|..|+.+|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 234788889988876 5667888887764
No 43
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=98.15 E-value=4.9e-05 Score=71.04 Aligned_cols=102 Identities=18% Similarity=0.277 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHH
Q psy14164 154 DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLR 233 (361)
Q Consensus 154 ~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~ 233 (361)
...+...|+++|--++-.+|.++..+.....+..|+.+|+...+..++..++.+|.++..+++.++..|-+.+|+..++.
T Consensus 104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ 183 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS 183 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence 34467779999999999999999999999999999999976567799999999999999999999999999999999999
Q ss_pred hhccC--CHHHHHHHHHHHHHHhc
Q psy14164 234 CIQSK--KEKLVIKSCFLIACLCT 255 (361)
Q Consensus 234 lL~s~--~~~v~~kA~~ll~~L~~ 255 (361)
++++. +..+|.|..-++.-.+.
T Consensus 184 llk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 184 LLKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HHccccccHHHhHHHHHHHHHHHc
Confidence 99865 78999888877765444
No 44
>KOG0946|consensus
Probab=98.15 E-value=0.0001 Score=76.92 Aligned_cols=211 Identities=20% Similarity=0.284 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCH-
Q psy14164 97 GAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEG--SDPELRWRAAETVADIVQNNP- 173 (361)
Q Consensus 97 ~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s--~~~~vr~~Aa~~Lg~iaqnn~- 173 (361)
.+-+.+.+.-+.+ +.-.+++..|+..|.-+... +. -.+-.-|+++|+..|.. .++++-..|+.++.++..+.+
T Consensus 21 aETI~kLcDRves-sTL~eDRR~A~rgLKa~srk--YR-~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 21 AETIEKLCDRVES-STLLEDRRDAVRGLKAFSRK--YR-EEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred HhHHHHHHHHHhh-ccchhhHHHHHHHHHHHHHH--HH-HHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 3344444444443 12247787887777776542 22 23445689999998864 689999999999999987753
Q ss_pred -------H--------HHHHHHh-cChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhh-HHHHHhh-CcHHHHHHhh
Q psy14164 174 -------F--------SQNFIIQ-TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEEC-LKEFIKR-DGFSVLLRCI 235 (361)
Q Consensus 174 -------~--------~q~~v~~-~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~-~~~f~~~-ggi~~Lv~lL 235 (361)
. ..+.+++ .+.+..|+..+.+ .+-.||..++--||++.++-|.. ++.++.. -|++.|+.+|
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~-~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEE-FDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHh-hchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 2 2334443 3788889999987 57899999999999999876554 4445444 4999999999
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCC-hhHHHHHHHHHHHHHhcChHHHHhhccC
Q psy14164 236 QSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALD-TEMNEHLLSALASLIKDSPEAQSLCRLE 312 (361)
Q Consensus 236 ~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d-~~~~e~al~aL~~L~~~~~~~~~~~~~~ 312 (361)
.+...-+|-.|..++..|+..++.....+.=.+++..|..+++.....| --+.+-|+..|.+|+..+..-...++.+
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~ 253 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREG 253 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcc
Confidence 9999999999999999999999988888888899999999998652112 2577889999999998775444444443
No 45
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.15 E-value=0.00017 Score=74.09 Aligned_cols=213 Identities=19% Similarity=0.197 Sum_probs=140.3
Q ss_pred CCCHHhHHHHHHHHHhhcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCC
Q psy14164 76 SMNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQ--DQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGS 153 (361)
Q Consensus 76 ~~s~e~~~~L~eal~~~~~~~~~~mk~~l~~L~~~~--~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~ 153 (361)
.-+.+.++...=++..+...+.+.+.-++..+...- .+...+..||..|..+. ..+.+..+ ++.+.++|.++
T Consensus 53 s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-~~~~~~~l-----~~~v~~ll~~~ 126 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-TPEMAEPL-----IPDVIKLLSDP 126 (526)
T ss_dssp SSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--SHHHHHHH-----HHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-ccchhhHH-----HHHHHHHhcCC
Confidence 445566777777788887555555555666554322 33567888998888866 44545443 78889999999
Q ss_pred CHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHH
Q psy14164 154 DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLR 233 (361)
Q Consensus 154 ~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~ 233 (361)
++-||..|+.++..+.+.+|..- -.. .++.|.++|.+ +++.|+..|+.++..+ +.++.....++ ..-+..|.+
T Consensus 127 ~~~VRk~A~~~l~~i~~~~p~~~---~~~-~~~~l~~lL~d-~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~ 199 (526)
T PF01602_consen 127 SPYVRKKAALALLKIYRKDPDLV---EDE-LIPKLKQLLSD-KDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQ 199 (526)
T ss_dssp SHHHHHHHHHHHHHHHHHCHCCH---HGG-HHHHHHHHTTH-SSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhccCHHHH---HHH-HHHHHhhhccC-CcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhh
Confidence 99999999999999999887632 223 69999999975 7889999999999999 44444311111 112223333
Q ss_pred hhccCCHHHHHHHHHHHHHHhcCCchHH-------------------------HHH--------HhCCcHHHHHHhccCC
Q psy14164 234 CIQSKKEKLVIKSCFLIACLCTDNNQVK-------------------------QVL--------LSMGMVEQMCVLIDIE 280 (361)
Q Consensus 234 lL~s~~~~v~~kA~~ll~~L~~~~~~~~-------------------------~~l--------~~~g~i~~Lv~lL~~~ 280 (361)
++...++-++.++..++..++...+... ..+ .-..+++.|+.+|.++
T Consensus 200 ~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~ 279 (526)
T PF01602_consen 200 LLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSS 279 (526)
T ss_dssp HHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSS
T ss_pred cccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcc
Confidence 3333444444444444443333211111 000 2245788999999988
Q ss_pred CCCChhHHHHHHHHHHHHHhcChH
Q psy14164 281 DALDTEMNEHLLSALASLIKDSPE 304 (361)
Q Consensus 281 ~~~d~~~~e~al~aL~~L~~~~~~ 304 (361)
+..++-.++.+|..++...+.
T Consensus 280 ---~~nvr~~~L~~L~~l~~~~~~ 300 (526)
T PF01602_consen 280 ---DPNVRYIALDSLSQLAQSNPP 300 (526)
T ss_dssp ---SHHHHHHHHHHHHHHCCHCHH
T ss_pred ---cchhehhHHHHHHHhhcccch
Confidence 899999999999999988744
No 46
>KOG2171|consensus
Probab=98.14 E-value=0.00017 Score=78.19 Aligned_cols=195 Identities=15% Similarity=0.152 Sum_probs=134.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHC--CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHHH
Q psy14164 99 ELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKM--GGLPVLQPLLEGSDPELRWRAAETVADIVQN-NPFS 175 (361)
Q Consensus 99 ~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~--Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn-n~~~ 175 (361)
.+.+.+..+.. +.+-..|..||-+|....|- ....+.+. ..++.++..|+.+++.||..|+.+||.++++ -|..
T Consensus 348 ~~~~~l~~~l~-S~~w~~R~AaL~Als~i~EG--c~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 348 PLFEALEAMLQ-STEWKERHAALLALSVIAEG--CSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence 34555555544 34557888999898888762 22332221 2366667789999999999999999999987 4455
Q ss_pred HHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHH-HHHHhhccCCHHHHHHHHHHHHHHh
Q psy14164 176 QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFS-VLLRCIQSKKEKLVIKSCFLIACLC 254 (361)
Q Consensus 176 q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~-~Lv~lL~s~~~~v~~kA~~ll~~L~ 254 (361)
|... ..-++|.|+..+++.....|+..|+.|+=|..-.++...-.=+--+.+. .+..+++++...+|..++.+|++.+
T Consensus 425 qk~~-~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA 503 (1075)
T KOG2171|consen 425 QKKH-HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVA 503 (1075)
T ss_pred HHHH-HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 5544 3457778999999877778999999999988877665433322234455 5555677889999999999999998
Q ss_pred cC-CchHHHHHHhCCcHHHHHHhccCCC-CCChhHHHHHHHHHHHHH
Q psy14164 255 TD-NNQVKQVLLSMGMVEQMCVLIDIED-ALDTEMNEHLLSALASLI 299 (361)
Q Consensus 255 ~~-~~~~~~~l~~~g~i~~Lv~lL~~~~-~~d~~~~e~al~aL~~L~ 299 (361)
.. ...+..++- -+++.|.+.|.+.+ .....+|-+++.++..+.
T Consensus 504 ~AA~~~F~pY~d--~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 504 DAAQEKFIPYFD--RLMPLLKNFLQNADDKDLRELRGKTMECLSLIA 548 (1075)
T ss_pred HHHhhhhHhHHH--HHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence 75 444555542 46778888888762 122345666666666555
No 47
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.12 E-value=0.00015 Score=70.10 Aligned_cols=175 Identities=18% Similarity=0.214 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcC----CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHH
Q psy14164 113 QKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEG----SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLL 188 (361)
Q Consensus 113 ~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s----~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~L 188 (361)
+.-....|+..|..++..-+....-...+.++.++..|.+ ++.+++..|+.+++++. ..+..+..+.+.|+++.|
T Consensus 118 D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL-~~~~~R~~f~~~~~v~~l 196 (312)
T PF03224_consen 118 DSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL-RSKEYRQVFWKSNGVSPL 196 (312)
T ss_dssp SHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH-TSHHHHHHHHTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh-CcchhHHHHHhcCcHHHH
Confidence 3345566777777776554433332223456777777664 56678899999999999 578899999999999999
Q ss_pred HHhh------ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCCch-H
Q psy14164 189 LTSI------EHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQ-V 260 (361)
Q Consensus 189 l~LL------~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~-~~~v~~kA~~ll~~L~~~~~~-~ 260 (361)
..+| .+.....++..++.++-.++- ++.....+...+-++.|+++++.. -+||.+-+...+.||+...+. .
T Consensus 197 ~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~ 275 (312)
T PF03224_consen 197 FDILRKQATNSNSSGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSN 275 (312)
T ss_dssp HHHHH---------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTH
T ss_pred HHHHHhhcccCCCCchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHH
Confidence 9999 444566889999999999987 566778898899999999999865 799999999999999987554 7
Q ss_pred HHHHHhCCcHHHHHHhccCCCCCChhHHHH
Q psy14164 261 KQVLLSMGMVEQMCVLIDIEDALDTEMNEH 290 (361)
Q Consensus 261 ~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~ 290 (361)
...++..|+++.+-.|... +-.|.++.+-
T Consensus 276 ~~~mv~~~~l~~l~~L~~r-k~~Dedl~ed 304 (312)
T PF03224_consen 276 IELMVLCGLLKTLQNLSER-KWSDEDLTED 304 (312)
T ss_dssp HHHHHHH-HHHHHHHHHSS---SSHHHHHH
T ss_pred HHHHHHccHHHHHHHHhcC-CCCCHHHHHH
Confidence 7888888877666555443 2347777664
No 48
>KOG4500|consensus
Probab=98.11 E-value=0.00032 Score=69.19 Aligned_cols=181 Identities=13% Similarity=0.121 Sum_probs=146.5
Q ss_pred HHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcC--------CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHH
Q psy14164 117 CIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEG--------SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLL 188 (361)
Q Consensus 117 ~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s--------~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~L 188 (361)
..-.++.|....|+-.-.-.|.+.|.+.-++.+++. +.-.+-..++..+.-+.++++..|..+..-..+..+
T Consensus 241 ~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~ 320 (604)
T KOG4500|consen 241 DEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFL 320 (604)
T ss_pred hhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHH
Confidence 344577788888776666778899999999998875 223455678888888888888777654433389999
Q ss_pred HHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc-----CCHHHHHHHHHHHHHHhcCCchHHHH
Q psy14164 189 LTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS-----KKEKLVIKSCFLIACLCTDNNQVKQV 263 (361)
Q Consensus 189 l~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s-----~~~~v~~kA~~ll~~L~~~~~~~~~~ 263 (361)
+..+.+ .+......+.-||+|.+|... ....|++.+-+..|+.+|.. ++-++|-.++.+++||+- ....+..
T Consensus 321 ~sw~~S-~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I-Pv~nka~ 397 (604)
T KOG4500|consen 321 ESWFRS-DDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI-PVSNKAH 397 (604)
T ss_pred HHHhcC-CchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc-cCCchhh
Confidence 999997 466899999999999999654 45678889999999999864 478899999999999987 4567889
Q ss_pred HHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164 264 LLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP 303 (361)
Q Consensus 264 l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~ 303 (361)
++..|+.+.++..|+.. .+.+.-+.+.++..+...-+
T Consensus 398 ~~~aGvteaIL~~lk~~---~ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 398 FAPAGVTEAILLQLKLA---SPPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred ccccchHHHHHHHHHhc---CCcchHHHHHHHHHHHhchH
Confidence 99999999999999998 89999999999988886655
No 49
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.11 E-value=7.4e-06 Score=54.67 Aligned_cols=41 Identities=12% Similarity=0.285 Sum_probs=37.8
Q ss_pred ChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhc
Q psy14164 215 NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT 255 (361)
Q Consensus 215 ~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~ 255 (361)
++...+.+++.||++.|+.+|++++..+++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 45678899999999999999999999999999999999973
No 50
>KOG2759|consensus
Probab=98.10 E-value=0.00071 Score=66.56 Aligned_cols=199 Identities=17% Similarity=0.211 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHH-HH------HCCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q psy14164 97 GAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYAND-FL------KMGGLPVLQPLLEGSDPELRWRAAETVADIV 169 (361)
Q Consensus 97 ~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~-~~------~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~ia 169 (361)
.+..+-.+..++. ...++...-+|--+.++...-....+ |+ +--.+.+.+++|...+.-+...+.++|+.++
T Consensus 64 ~~~v~~fi~LlS~-~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la 142 (442)
T KOG2759|consen 64 AQYVKTFINLLSH-IDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLA 142 (442)
T ss_pred HHHHHHHHHHhch-hhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 3444444444444 44455555666666666543222222 21 1224899999999999999999999999998
Q ss_pred hcCHHHH---HHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC--CHHHHH
Q psy14164 170 QNNPFSQ---NFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK--KEKLVI 244 (361)
Q Consensus 170 qnn~~~q---~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~--~~~v~~ 244 (361)
...+..- +.-+. ...|-.++.+..+......|+.+|..+.|. ++-+.+|..++|+..++..+.++ +..+|=
T Consensus 143 ~~g~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQY 218 (442)
T KOG2759|consen 143 CFGNCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQY 218 (442)
T ss_pred HhccccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHH
Confidence 8654221 11111 223334444434556778899999999995 55678899999999999999433 899999
Q ss_pred HHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164 245 KSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP 303 (361)
Q Consensus 245 kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~ 303 (361)
..+|++.-|+.+ |...+.+...+.|+.|..+++.. ...++...++.++.+++...|
T Consensus 219 qsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~--~KEKV~Rivlai~~Nll~k~~ 274 (442)
T KOG2759|consen 219 QSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKES--TKEKVTRIVLAIFRNLLDKGP 274 (442)
T ss_pred HHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCc
Confidence 999999988774 55667888889999999999875 256777888888999998775
No 51
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.09 E-value=8.4e-06 Score=57.83 Aligned_cols=55 Identities=18% Similarity=0.326 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHH
Q psy14164 155 PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCL 211 (361)
Q Consensus 155 ~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l 211 (361)
+.||..|+|+||++++..+...+.++ ..++|.|+.+|.+ ++..||..|+|||++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d-~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQD-DDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTS-SSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcC-CCHHHHHHHHHHHhcC
Confidence 46899999999999998888776643 4699999999986 4569999999999976
No 52
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.04 E-value=0.0004 Score=71.23 Aligned_cols=99 Identities=17% Similarity=0.228 Sum_probs=45.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEF 222 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f 222 (361)
+..+.+=|.|+++.+|..|+++|++++ ++..-+. +++.+.+++.+ +++.||++|+.|+..+.+.+|.....
T Consensus 81 ~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~-~~~~VRk~A~~~l~~i~~~~p~~~~~- 151 (526)
T PF01602_consen 81 INSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSD-PSPYVRKKAALALLKIYRKDPDLVED- 151 (526)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHCHCCHHG-
T ss_pred HHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcC-CchHHHHHHHHHHHHHhccCHHHHHH-
Confidence 344444445555555555555555544 2322221 34444444443 34455555555555555444432211
Q ss_pred HhhCcHHHHHHhhccCCHHHHHHHHHHHHHH
Q psy14164 223 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACL 253 (361)
Q Consensus 223 ~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L 253 (361)
. -++.+..+|.+++..|+..|+.++..+
T Consensus 152 --~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 152 --E-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp --G-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred --H-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 0 244555555555555555555555554
No 53
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.02 E-value=0.00039 Score=76.54 Aligned_cols=59 Identities=10% Similarity=-0.051 Sum_probs=32.8
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164 228 FSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 299 (361)
Q Consensus 228 i~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~ 299 (361)
++.|..++++++..||..|+.+|..+-... .++..++..|.++ +..+|..|+.+|..+-
T Consensus 777 ~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL~d~---d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 777 GDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAALRAS---AWQVRQGAARALAGAA 835 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHhcCC---ChHHHHHHHHHHHhcc
Confidence 345555555555566665555555542210 1224456666666 6677777777776553
No 54
>KOG3678|consensus
Probab=98.00 E-value=8.7e-05 Score=73.67 Aligned_cols=158 Identities=15% Similarity=0.211 Sum_probs=132.6
Q ss_pred HCCCHHHHHHhhcCCCH--HHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCCh
Q psy14164 139 KMGGLPVLQPLLEGSDP--ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENE 216 (361)
Q Consensus 139 ~~Gg~~~Lv~LL~s~~~--~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~ 216 (361)
.-||+..|++++.+++. .||..|+++|..|.. ..+.+.+...| +..++.+..........+..+..|.+|-.|+.
T Consensus 178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSe 254 (832)
T KOG3678|consen 178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSE 254 (832)
T ss_pred ccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhH
Confidence 35899999999999875 569999999998864 44667777766 66666666655567899999999999999999
Q ss_pred hhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHH
Q psy14164 217 ECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL 295 (361)
Q Consensus 217 ~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL 295 (361)
..-+.++..||+..++.-.+..++.+.+.++.++.|++-. ....++.+++....+.|.-|-.+. |.-+|-+|..++
T Consensus 255 et~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk---Del~R~~AClAV 331 (832)
T KOG3678|consen 255 ETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK---DELLRLHACLAV 331 (832)
T ss_pred HHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch---HHHHHHHHHHHH
Confidence 9889999999999999989999999999999999987765 667888899999988888887776 888899999998
Q ss_pred HHHHhcC
Q psy14164 296 ASLIKDS 302 (361)
Q Consensus 296 ~~L~~~~ 302 (361)
..|+...
T Consensus 332 ~vlat~K 338 (832)
T KOG3678|consen 332 AVLATNK 338 (832)
T ss_pred hhhhhhh
Confidence 8887643
No 55
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.99 E-value=0.00039 Score=76.49 Aligned_cols=126 Identities=10% Similarity=0.038 Sum_probs=89.7
Q ss_pred HCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhh
Q psy14164 139 KMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEEC 218 (361)
Q Consensus 139 ~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~ 218 (361)
+++..+.|+.+|.++++.||..|+.+|+.+.... ...++.|..++.+ +++.||..|+.+|+.+-. ++.
T Consensus 740 ~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D-~d~~VR~aA~~aLg~~g~--~~~ 807 (897)
T PRK13800 740 SVDDVESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGD-PDPLVRAAALAALAELGC--PPD 807 (897)
T ss_pred cccCcHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcC-CCHHHHHHHHHHHHhcCC--cch
Confidence 3344455555555555556655555555554321 1237788888875 578999999999988732 211
Q ss_pred HHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHH
Q psy14164 219 LKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASL 298 (361)
Q Consensus 219 ~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L 298 (361)
.++.|+..|.+++..||..|+.+|..+-. ...++.|+.+|..+ +..+|..|+.+|..+
T Consensus 808 --------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~---~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 808 --------DVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPALVEALTDP---HLDVRKAAVLALTRW 865 (897)
T ss_pred --------hHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCC---CHHHHHHHHHHHhcc
Confidence 12457888999999999999999987642 13468999999998 999999999999886
No 56
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.96 E-value=4.8e-05 Score=61.21 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhcc-CCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy14164 157 LRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH-DSNTTVQVKSLYAVSCLVRENEECLKEFI 223 (361)
Q Consensus 157 vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~-~~~~~v~~~Al~ALS~l~r~~~~~~~~f~ 223 (361)
+|....++|||++-.|+.+|+.+.+.|++|.++....- +.++.+|..|+|||=+++.+++.++..+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 46778999999999999999999999999999998653 35789999999999999999999976554
No 57
>PTZ00429 beta-adaptin; Provisional
Probab=97.91 E-value=0.0042 Score=66.66 Aligned_cols=193 Identities=11% Similarity=0.058 Sum_probs=128.7
Q ss_pred hHHHHHHHHHhhc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc-CcccHHHHHHCCCHHHHHHhhcCCCHHH
Q psy14164 81 NRGFLLDALNSMM--VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYIC-SIDYANDFLKMGGLPVLQPLLEGSDPEL 157 (361)
Q Consensus 81 ~~~~L~eal~~~~--~~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve-~idna~~~~~~Gg~~~Lv~LL~s~~~~v 157 (361)
+++-+++.+..++ .|-....-+++..+.+ .+.+.|.-..--+..+.+ +.|.+ +=.+..|.+=|.++++-+
T Consensus 49 kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S--~d~elKKLvYLYL~~ya~~~pela-----lLaINtl~KDl~d~Np~I 121 (746)
T PTZ00429 49 KKAAVKRIIANMTMGRDVSYLFVDVVKLAPS--TDLELKKLVYLYVLSTARLQPEKA-----LLAVNTFLQDTTNSSPVV 121 (746)
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcccChHHH-----HHHHHHHHHHcCCCCHHH
Confidence 4555555555554 3334445555554433 344555444444444433 22211 114667778888999999
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc
Q psy14164 158 RWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS 237 (361)
Q Consensus 158 r~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s 237 (361)
|..|+++++++- .+..-+. +++++.+.+.+ .++-||++|+.|+..+-+.++. .+.+.+-++.|.++|.+
T Consensus 122 RaLALRtLs~Ir--~~~i~e~-----l~~~lkk~L~D-~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D 190 (746)
T PTZ00429 122 RALAVRTMMCIR--VSSVLEY-----TLEPLRRAVAD-PDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLND 190 (746)
T ss_pred HHHHHHHHHcCC--cHHHHHH-----HHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcC
Confidence 999999999875 3443333 46677788875 7889999999999999887664 33445667789999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHH
Q psy14164 238 KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALA 296 (361)
Q Consensus 238 ~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~ 296 (361)
.+..|+..|+.++..+...++... -...+.+..|+..|..- +.-.+..++.+|.
T Consensus 191 ~dp~Vv~nAl~aL~eI~~~~~~~l--~l~~~~~~~Ll~~L~e~---~EW~Qi~IL~lL~ 244 (746)
T PTZ00429 191 NNPVVASNAAAIVCEVNDYGSEKI--ESSNEWVNRLVYHLPEC---NEWGQLYILELLA 244 (746)
T ss_pred CCccHHHHHHHHHHHHHHhCchhh--HHHHHHHHHHHHHhhcC---ChHHHHHHHHHHH
Confidence 999999999999999987665432 23345677777777655 5556666666663
No 58
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.89 E-value=3.6e-05 Score=59.42 Aligned_cols=88 Identities=15% Similarity=0.237 Sum_probs=69.3
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHH
Q psy14164 185 LNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVL 264 (361)
Q Consensus 185 l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l 264 (361)
||.|++.|.++++..+|..|+++|+.+- .+ ..++.|+.++++++..||..|++++..+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG---DP--------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 6889999965688999999999999441 11 34789999999999999999999999772
Q ss_pred HhCCcHHHHHHhccCCCCCChhHHHHHHHHHH
Q psy14164 265 LSMGMVEQMCVLIDIEDALDTEMNEHLLSALA 296 (361)
Q Consensus 265 ~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~ 296 (361)
....++.|.+++.+++ +..+|..|..+|.
T Consensus 60 -~~~~~~~L~~~l~~~~--~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDD--DEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-S--SHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCC--cHHHHHHHHhhcC
Confidence 1347889999998761 4556888888873
No 59
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.75 E-value=0.0031 Score=63.34 Aligned_cols=184 Identities=16% Similarity=0.215 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHh
Q psy14164 114 KDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGS--DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 191 (361)
Q Consensus 114 ~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~--~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~L 191 (361)
.+-...++..|..++..-+....|.+.+|+++|+.+|+.. +..++=.++-||--++=+.+ ......+.+.++.|+.+
T Consensus 158 ~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i 236 (429)
T cd00256 158 NDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDI 236 (429)
T ss_pred cchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHH
Confidence 3455566677888887778888899999999999999763 44666666666666665433 55566678999999999
Q ss_pred hccCCCHHHHHHHHHHHHHHhcCCh----h--h-----------------------------------------------
Q psy14164 192 IEHDSNTTVQVKSLYAVSCLVRENE----E--C----------------------------------------------- 218 (361)
Q Consensus 192 L~~~~~~~v~~~Al~ALS~l~r~~~----~--~----------------------------------------------- 218 (361)
+.....+.|.+-++.++-|++..+. . .
T Consensus 237 ~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsf 316 (429)
T cd00256 237 LKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSF 316 (429)
T ss_pred HHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 9977777787888888888876320 0 0
Q ss_pred ---------------------------HHHHHhhC--cHHHHHHhhc-cCCHHHHHHHHHHHHHHhcCCchHHHHHHhCC
Q psy14164 219 ---------------------------LKEFIKRD--GFSVLLRCIQ-SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG 268 (361)
Q Consensus 219 ---------------------------~~~f~~~g--gi~~Lv~lL~-s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g 268 (361)
...|-+.+ .+..|+++|. ++|+.+..-||+=|..++...|..+..+.+.|
T Consensus 317 D~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg 396 (429)
T cd00256 317 DEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG 396 (429)
T ss_pred HHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC
Confidence 12222222 1244555563 44666666677777777777788888888999
Q ss_pred cHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164 269 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKD 301 (361)
Q Consensus 269 ~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~ 301 (361)
+=..++.++.++ |++++-.||.|+..|..+
T Consensus 397 ~K~~vM~Lm~h~---d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 397 GKQRVMRLLNHE---DPNVRYEALLAVQKLMVH 426 (429)
T ss_pred cHHHHHHHhcCC---CHHHHHHHHHHHHHHHHh
Confidence 999999999999 999999999999888643
No 60
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.74 E-value=6.5e-05 Score=53.19 Aligned_cols=54 Identities=15% Similarity=0.294 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHH
Q psy14164 199 TVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL 253 (361)
Q Consensus 199 ~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L 253 (361)
.+|..|+|+|++++.+.+.....+. ...++.|+.+|.+++..||..|+|+|.+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6899999999999988887777654 68899999999999999999999999865
No 61
>KOG4646|consensus
Probab=97.73 E-value=0.00044 Score=58.32 Aligned_cols=122 Identities=17% Similarity=0.222 Sum_probs=101.0
Q ss_pred cCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHH
Q psy14164 151 EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSV 230 (361)
Q Consensus 151 ~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~ 230 (361)
+..+.+-+++..-=|+|.+ -+|.+-..+.+..++..++..|.. +++.+...++.+|+|+|-+ +.+.+-+.+++|++.
T Consensus 27 ~tt~~eakeqv~ANLANFA-YDP~Nys~Lrql~vLdlFvdsl~e-~ne~LvefgIgglCNlC~d-~~n~~~I~ea~g~pl 103 (173)
T KOG4646|consen 27 TTTNIEAKEQVTANLANFA-YDPINYSHLRQLDVLDLFVDSLEE-QNELLVEFGIGGLCNLCLD-KTNAKFIREALGLPL 103 (173)
T ss_pred HhccHHHHHHHHHHHHhhc-cCcchHHHHHHhhHHHHHHHHhhc-ccHHHHHHhHHHHHhhccC-hHHHHHHHHhcCCce
Confidence 3467777877777777777 478889999999999999999996 6889999999999999985 556677778999999
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHH
Q psy14164 231 LLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCV 275 (361)
Q Consensus 231 Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~ 275 (361)
++.+++++...+.-.|+.++..|+..+...+..+..--++..+-.
T Consensus 104 ii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r 148 (173)
T KOG4646|consen 104 IIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQR 148 (173)
T ss_pred EEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHH
Confidence 999999999999999999999998887777877765555444433
No 62
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.71 E-value=0.0015 Score=56.68 Aligned_cols=127 Identities=14% Similarity=0.266 Sum_probs=105.2
Q ss_pred cHHHHHHCCCHHHHHHhhcCCC------HHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCC-CHHHHHHHH
Q psy14164 133 YANDFLKMGGLPVLQPLLEGSD------PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS-NTTVQVKSL 205 (361)
Q Consensus 133 na~~~~~~Gg~~~Lv~LL~s~~------~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~-~~~v~~~Al 205 (361)
.|..|++.||+..|+++++++. .++...++.+.-.+....- +.-..++...+..++..++... +..+...|+
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence 4788999999999999998755 4777888888888887653 3334666678888999888644 678999999
Q ss_pred HHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchH
Q psy14164 206 YAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQV 260 (361)
Q Consensus 206 ~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~ 260 (361)
.-|=+++-+++.....+-+.--++.|+..|+.++..+|.+|..++..|....++.
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 9999999988877778877778999999999999999999999999999874443
No 63
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.64 E-value=0.00012 Score=48.11 Aligned_cols=39 Identities=28% Similarity=0.446 Sum_probs=35.7
Q ss_pred ccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q psy14164 132 DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQ 170 (361)
Q Consensus 132 dna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaq 170 (361)
+++..+.+.||+++|+++|.+++++++..|+|+|+|++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 467788899999999999999999999999999999873
No 64
>KOG1062|consensus
Probab=97.60 E-value=0.008 Score=63.42 Aligned_cols=188 Identities=13% Similarity=0.131 Sum_probs=137.8
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhC
Q psy14164 147 QPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRD 226 (361)
Q Consensus 147 v~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~g 226 (361)
.+=|+|++.-|...|+-+||+++ +|+.. ..+.|-.-+++++ .++.+|+||+-|.-.++|.-|...+.|+
T Consensus 113 knDL~s~nq~vVglAL~alg~i~--s~Ema-----rdlapeVe~Ll~~-~~~~irKKA~Lca~r~irK~P~l~e~f~--- 181 (866)
T KOG1062|consen 113 KNDLNSSNQYVVGLALCALGNIC--SPEMA-----RDLAPEVERLLQH-RDPYIRKKAALCAVRFIRKVPDLVEHFV--- 181 (866)
T ss_pred HhhccCCCeeehHHHHHHhhccC--CHHHh-----HHhhHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCchHHHHhh---
Confidence 34567899999999999999998 34433 2367888889987 6889999999999999999888877775
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccC----C--------CCCChhHHHHHHHH
Q psy14164 227 GFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDI----E--------DALDTEMNEHLLSA 294 (361)
Q Consensus 227 gi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~----~--------~~~d~~~~e~al~a 294 (361)
+....+|.+.+.-|-.-+..++..+|..+++...++.+ +++.++..|+. . ...|+-+|..+|+.
T Consensus 182 --~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrl 257 (866)
T KOG1062|consen 182 --IAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRL 257 (866)
T ss_pred --HHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHH
Confidence 45577888888999999999999999998888888776 66666655542 2 13367789999999
Q ss_pred HHHHHhcChHHHH--------------hhccCcchHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHhcCCCC
Q psy14164 295 LASLIKDSPEAQS--------------LCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEVFEEDS 352 (361)
Q Consensus 295 L~~L~~~~~~~~~--------------~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~il~~~f~~~~ 352 (361)
|.-+-++.+...+ ..++.+ ..+|-+..+.+...+.+..-+..+.+||-+|....|
T Consensus 258 LriLGq~d~daSd~M~DiLaqvatntdsskN~G---nAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d 326 (866)
T KOG1062|consen 258 LRILGQNDADASDLMNDILAQVATNTDSSKNAG---NAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRD 326 (866)
T ss_pred HHHhcCCCccHHHHHHHHHHHHHhcccccccch---hHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCc
Confidence 9888887765432 112222 224445555555444556667788888888776555
No 65
>KOG1517|consensus
Probab=97.60 E-value=0.0011 Score=71.43 Aligned_cols=172 Identities=14% Similarity=0.188 Sum_probs=137.8
Q ss_pred CcccHHHHHHCCCHHHHHHhhcC---CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHH
Q psy14164 130 SIDYANDFLKMGGLPVLQPLLEG---SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLY 206 (361)
Q Consensus 130 ~idna~~~~~~Gg~~~Lv~LL~s---~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ 206 (361)
+.....+++|-+|...+++.|.. -+++-|..|+.+|+.++.|-+.-|...++.+.+..-+..|..++.+-+|--++-
T Consensus 543 D~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~i 622 (1387)
T KOG1517|consen 543 DPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCI 622 (1387)
T ss_pred CchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHH
Confidence 34456789999999999998875 346899999999999999999999999999999999999997556788999999
Q ss_pred HHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC----chHHHHH------------HhCCcH
Q psy14164 207 AVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN----NQVKQVL------------LSMGMV 270 (361)
Q Consensus 207 ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~----~~~~~~l------------~~~g~i 270 (361)
+|+.|=.+++.++-.=.+.++...|..+|..+.+.||..|+|++..++.+. ++..... ++.-+.
T Consensus 623 cLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~ 702 (1387)
T KOG1517|consen 623 CLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLII 702 (1387)
T ss_pred HHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHH
Confidence 999999999998877788899999999999999999999999999999862 2211111 222222
Q ss_pred ---HHHHHhccCCCCCChhHHHHHHHHHHHHHhcChH
Q psy14164 271 ---EQMCVLIDIEDALDTEMNEHLLSALASLIKDSPE 304 (361)
Q Consensus 271 ---~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~ 304 (361)
..++.+++.. .+-++..+.-+|..++..+..
T Consensus 703 ~~~~~ll~~vsdg---splvr~ev~v~ls~~~~g~~~ 736 (1387)
T KOG1517|consen 703 KGLMSLLALVSDG---SPLVRTEVVVALSHFVVGYVS 736 (1387)
T ss_pred hhHHHHHHHHhcc---chHHHHHHHHHHHHHHHhhHH
Confidence 2555666655 777777777788887776654
No 66
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.56 E-value=0.00047 Score=55.51 Aligned_cols=68 Identities=16% Similarity=0.272 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc--CCHHHHHHHHHHHHHHhcCCchHHHHHHhC
Q psy14164 200 VQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS--KKEKLVIKSCFLIACLCTDNNQVKQVLLSM 267 (361)
Q Consensus 200 v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s--~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~ 267 (361)
+|...+..|+|++-.++..+..+.+.||++.++.+..- .++-++..|.|+|.+|+.++++.++.+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 46778899999999999999999999999999988653 489999999999999999998887766543
No 67
>KOG2759|consensus
Probab=97.53 E-value=0.0055 Score=60.44 Aligned_cols=202 Identities=16% Similarity=0.208 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCH
Q psy14164 96 VGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEG--SDPELRWRAAETVADIVQNNP 173 (361)
Q Consensus 96 ~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s--~~~~vr~~Aa~~Lg~iaqnn~ 173 (361)
+.+.-+..++.+.+.+.+.+-..-+..-|..++.-....-.|+...|+..++..|.| .+-.++=+.+.|+--++-| |
T Consensus 153 e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~ 231 (442)
T KOG2759|consen 153 ELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-P 231 (442)
T ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-H
Confidence 444444444444443333334444555555666555666778888999999998743 4556666677777777654 5
Q ss_pred HHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChh------h-----------------------------
Q psy14164 174 FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEE------C----------------------------- 218 (361)
Q Consensus 174 ~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~------~----------------------------- 218 (361)
...+.+...+.++.|..++.++..+.|-+-.+..+-|++-..+. .
T Consensus 232 ~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~d 311 (442)
T KOG2759|consen 232 HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDD 311 (442)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHH
Confidence 45566677899999999998766667777777777777655431 1
Q ss_pred ---------------------------------------------HHHHHhhC--cHHHHHHhhccC-CHHHHHHHHHHH
Q psy14164 219 ---------------------------------------------LKEFIKRD--GFSVLLRCIQSK-KEKLVIKSCFLI 250 (361)
Q Consensus 219 ---------------------------------------------~~~f~~~g--gi~~Lv~lL~s~-~~~v~~kA~~ll 250 (361)
...|.+.+ .+..|+.+|++. |+.+-.-||+=|
T Consensus 312 i~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DI 391 (442)
T KOG2759|consen 312 IEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDI 391 (442)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhH
Confidence 11111111 234556666654 466666777777
Q ss_pred HHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164 251 ACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD 301 (361)
Q Consensus 251 ~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~ 301 (361)
..+++..|..+..+.+.|+=..+++||.++ |++++-+|+.|+..|...
T Consensus 392 ge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~---d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 392 GEYVRHYPEGKAVVEKYGGKERVMNLLNHE---DPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHhCchHhHHHHHhchHHHHHHHhcCC---CchHHHHHHHHHHHHHhh
Confidence 777788888999999999999999999999 999999999999888754
No 68
>KOG3678|consensus
Probab=97.50 E-value=0.0031 Score=62.95 Aligned_cols=175 Identities=15% Similarity=0.251 Sum_probs=133.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCHHHHHH
Q psy14164 100 LEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLE-GSDPELRWRAAETVADIVQNNPFSQNF 178 (361)
Q Consensus 100 mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~-s~~~~vr~~Aa~~Lg~iaqnn~~~q~~ 178 (361)
+-..+..+..+......++.+...|+++. .-+|...+...| +..++.+-+ ...+++....+.+|+++-.+.....+.
T Consensus 182 lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~ 259 (832)
T KOG3678|consen 182 LDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQR 259 (832)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45566667776655577888888777765 335556666666 666666543 466788899999999999998888888
Q ss_pred HHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q psy14164 179 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRE-NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN 257 (361)
Q Consensus 179 v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~-~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~ 257 (361)
+++.|++..++--+.. .++.+.+.++.||+|++-+ ....+..+++...-+-|.-+-.+.|.-+|-.||.+++-|++.
T Consensus 260 Lvaa~~lD~vl~~~rR-t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~- 337 (832)
T KOG3678|consen 260 LVAAGGLDAVLYWCRR-TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN- 337 (832)
T ss_pred HHhhcccchheeeccc-CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh-
Confidence 9999999999888886 5789999999999988765 566777888888888888888888999999999999999874
Q ss_pred chHHHHHHhCCc---HHHHHHhcc
Q psy14164 258 NQVKQVLLSMGM---VEQMCVLID 278 (361)
Q Consensus 258 ~~~~~~l~~~g~---i~~Lv~lL~ 278 (361)
.++...+.+.|. +++++..+.
T Consensus 338 KE~E~~VrkS~TlaLVEPlva~~D 361 (832)
T KOG3678|consen 338 KEVEREVRKSGTLALVEPLVASLD 361 (832)
T ss_pred hhhhHHHhhccchhhhhhhhhccC
Confidence 456666666664 445555443
No 69
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.00044 Score=69.81 Aligned_cols=141 Identities=13% Similarity=0.155 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc
Q psy14164 158 RWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS 237 (361)
Q Consensus 158 r~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s 237 (361)
-.+++.+|-.++..-...+.-+.++.+..+|+++|+. ++..+.--+..+|+|.+-...+-+..|+..|.+..|+..+.+
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~-Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN-PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC-ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence 3455666666766666666677788899999999996 666788889999999998888888999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCc-hHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164 238 KKEKLVIKSCFLIACLCTDNN-QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 238 ~~~~v~~kA~~ll~~L~~~~~-~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
.|..+|.+..|.++++.-+.. ..+=.++..-.+..++.+...+ +-.+++.++..|.++.-++
T Consensus 485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDp---c~~vq~q~lQilrNftc~~ 547 (743)
T COG5369 485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDP---CFKVQHQVLQILRNFTCDT 547 (743)
T ss_pred chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCc---ccccHHHHHHHHHhccccc
Confidence 999999999999999998843 3333555566678899998888 8999999999999998644
No 70
>PF05536 Neurochondrin: Neurochondrin
Probab=97.46 E-value=0.0065 Score=63.21 Aligned_cols=153 Identities=15% Similarity=0.190 Sum_probs=122.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHH---HHHHhcChHHHHHHhhccC------CCHHHHHHHHHHHHHHhc
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ---NFIIQTDFLNLLLTSIEHD------SNTTVQVKSLYAVSCLVR 213 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q---~~v~~~g~l~~Ll~LL~~~------~~~~v~~~Al~ALS~l~r 213 (361)
+...+.+|++.+.+=|-.++-.+..++.+++..+ +.+.+.=+.+-|-+||.+. +....+.-|+.-|++.|+
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 5667888999888889999999999999887533 3477776667777788762 234677889999999998
Q ss_pred CChhhH--HHHHhhCcHHHHHHhhccCCH-HHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHH
Q psy14164 214 ENEECL--KEFIKRDGFSVLLRCIQSKKE-KLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEH 290 (361)
Q Consensus 214 ~~~~~~--~~f~~~ggi~~Lv~lL~s~~~-~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~ 290 (361)
. |... ..| .+-+|.|++++.+.+. .+...+..++..++ ..++-++.+++.|.++.|+..+.+ .....+.
T Consensus 87 ~-~~~a~~~~~--~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~----~~~~~E~ 158 (543)
T PF05536_consen 87 D-PELASSPQM--VSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN----QSFQMEI 158 (543)
T ss_pred C-hhhhcCHHH--HHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh----CcchHHH
Confidence 3 3322 333 3679999999987766 99999999999999 578899999999999999999886 4677899
Q ss_pred HHHHHHHHHhcCh
Q psy14164 291 LLSALASLIKDSP 303 (361)
Q Consensus 291 al~aL~~L~~~~~ 303 (361)
++.++.+++....
T Consensus 159 Al~lL~~Lls~~~ 171 (543)
T PF05536_consen 159 ALNLLLNLLSRLG 171 (543)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999887554
No 71
>KOG4413|consensus
Probab=97.44 E-value=0.003 Score=60.61 Aligned_cols=155 Identities=13% Similarity=0.180 Sum_probs=124.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCH--HHHH--HHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhh
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNP--FSQN--FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEEC 218 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~--~~q~--~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~ 218 (361)
.|.|-.=|.+++..|+..||.-||.+..+.+ .+.. .+++.|.+|.++.++-. .+.+|.+.|+-.|+.|++ +|.+
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg-eddeVAkAAiesikrial-fpaa 161 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG-EDDEVAKAAIESIKRIAL-FPAA 161 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC-CcHHHHHHHHHHHHHHHh-cHHH
Confidence 3444445778999999999999999998877 3333 35589999999999986 577999999999999999 7888
Q ss_pred HHHHHhhCcHHH--HHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHH
Q psy14164 219 LKEFIKRDGFSV--LLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALA 296 (361)
Q Consensus 219 ~~~f~~~ggi~~--Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~ 296 (361)
...++..+-... ++.+-...+.-+|.+...+|-.+.+-.|+...+..+.|++..|..-|+.++ |.-++..++..+.
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGte--DtLVianciElvt 239 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTE--DTLVIANCIELVT 239 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCc--ceeehhhHHHHHH
Confidence 888887665543 344444556778888999999998889999999999999999988888742 7778888888888
Q ss_pred HHHhc
Q psy14164 297 SLIKD 301 (361)
Q Consensus 297 ~L~~~ 301 (361)
.++..
T Consensus 240 eLaet 244 (524)
T KOG4413|consen 240 ELAET 244 (524)
T ss_pred HHHHH
Confidence 88753
No 72
>KOG1241|consensus
Probab=97.43 E-value=0.0033 Score=65.85 Aligned_cols=162 Identities=15% Similarity=0.201 Sum_probs=114.5
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHH-
Q psy14164 142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLK- 220 (361)
Q Consensus 142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~- 220 (361)
.||.+-.-+++|+-.-|..|+.+.|.+-.+-...+..-+-.+++|.++.++. +++.-++..+.|+++.++-+.+....
T Consensus 365 Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~l~e~~~n 443 (859)
T KOG1241|consen 365 VLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS-DPSLWVKDTAAWTLGRIADFLPEAIIN 443 (859)
T ss_pred hHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc-CchhhhcchHHHHHHHHHhhchhhccc
Confidence 4555555778899999999999999999887666766677899999999999 57889999999999999998764422
Q ss_pred HHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchH-HHH----HHhCCcHH-HHHHhccCC---CCCChhHHHHH
Q psy14164 221 EFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQV-KQV----LLSMGMVE-QMCVLIDIE---DALDTEMNEHL 291 (361)
Q Consensus 221 ~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~-~~~----l~~~g~i~-~Lv~lL~~~---~~~d~~~~e~a 291 (361)
...-..-++.++..|. +.+++-.++||++.+|+..-++. ... ... .+.+ .+-.||+.. +..+..+|..+
T Consensus 444 ~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AA 521 (859)
T KOG1241|consen 444 QELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAA 521 (859)
T ss_pred HhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHH
Confidence 2222344555555554 57999999999999999531110 000 111 1222 222334433 12357899999
Q ss_pred HHHHHHHHhcChHHH
Q psy14164 292 LSALASLIKDSPEAQ 306 (361)
Q Consensus 292 l~aL~~L~~~~~~~~ 306 (361)
-.+|..++..+|+.+
T Consensus 522 YeALmElIk~st~~v 536 (859)
T KOG1241|consen 522 YEALMELIKNSTDDV 536 (859)
T ss_pred HHHHHHHHHcCcHHH
Confidence 999999999998643
No 73
>KOG1222|consensus
Probab=97.41 E-value=0.022 Score=57.32 Aligned_cols=170 Identities=15% Similarity=0.198 Sum_probs=128.0
Q ss_pred HHHhhcCcccHHHHHHCCCHHHHHH-hhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHH
Q psy14164 124 LSDYICSIDYANDFLKMGGLPVLQP-LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQV 202 (361)
Q Consensus 124 L~~lve~idna~~~~~~Gg~~~Lv~-LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~ 202 (361)
...++-+-.|+.-++.-.|+..|+. -+++.++-+ ..++.|++|+....|..|++ .+.-|...++.+.+++.-.
T Consensus 450 ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~ 523 (791)
T KOG1222|consen 450 CINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGL 523 (791)
T ss_pred HHHHHhccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHH
Confidence 4566777788888888889999987 577776643 57889999998889999987 4777888888777888999
Q ss_pred HHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC--CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCC
Q psy14164 203 KSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE 280 (361)
Q Consensus 203 ~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~--~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~ 280 (361)
.++..++++.--.-+..+.+...+.+|.+...|+.. ...++-...-++...+. +......+...|+|+.++++|...
T Consensus 524 EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-d~~cA~Lla~a~~i~tlieLL~a~ 602 (791)
T KOG1222|consen 524 ECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-DLDCARLLAPAKLIDTLIELLQAC 602 (791)
T ss_pred HHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-hhHHHHHhCccccHHHHHHHHHhh
Confidence 999999999875444444555678899999988864 45566666666666554 445566677889999999999875
Q ss_pred CCCChhHHHHHHHHHHHHHhc
Q psy14164 281 DALDTEMNEHLLSALASLIKD 301 (361)
Q Consensus 281 ~~~d~~~~e~al~aL~~L~~~ 301 (361)
-.|.++....+..+..++.+
T Consensus 603 -QeDDEfV~QiiyVF~Q~l~H 622 (791)
T KOG1222|consen 603 -QEDDEFVVQIIYVFLQFLKH 622 (791)
T ss_pred -cccchHHHHHHHHHHHHHHH
Confidence 12566666677777777765
No 74
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.40 E-value=0.00043 Score=45.35 Aligned_cols=38 Identities=18% Similarity=0.397 Sum_probs=34.9
Q ss_pred hhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHh
Q psy14164 217 ECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLC 254 (361)
Q Consensus 217 ~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~ 254 (361)
.....+++.||++.|+++|++++.+++..|+|+|++|+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 35678889999999999999999999999999999986
No 75
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.36 E-value=0.018 Score=57.05 Aligned_cols=223 Identities=14% Similarity=0.063 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHh
Q psy14164 114 KDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEG--SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 191 (361)
Q Consensus 114 ~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s--~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~L 191 (361)
.+.+..++..+.+++.+.+.-..+.+.+.--.++..|.. .+..=|++|.+.+..+..-....+ -+..|++..++.+
T Consensus 39 ~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~--~~~~~vvralvai 116 (371)
T PF14664_consen 39 KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK--EIPRGVVRALVAI 116 (371)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc--cCCHHHHHHHHHH
Confidence 688999999999999998888899999876667777754 445568899999999876522211 2456889999999
Q ss_pred hccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHH
Q psy14164 192 IEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE 271 (361)
Q Consensus 192 L~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~ 271 (361)
..+ +++..|.-|+-.|.-++-.+|. .+..+||+..|++.+..+...+..-.+.++-++.. .|..|.++...--++
T Consensus 117 ae~-~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~ 191 (371)
T PF14664_consen 117 AEH-EDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD-SPRTRKYLRPGFDLE 191 (371)
T ss_pred HhC-CchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC-CcchhhhhcCCccHH
Confidence 997 5669999999999999987775 47789999999999988777788888999999887 577787776543355
Q ss_pred HHHHhccCC----CCCCh--hHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHHhhcChhhhHHHHHHHHHHHH
Q psy14164 272 QMCVLIDIE----DALDT--EMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLT 345 (361)
Q Consensus 272 ~Lv~lL~~~----~~~d~--~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~il~ 345 (361)
.+..-+... ...+. +....+..++..+++.-+..+-.|.+...++ +..+..+.. .+.+..++.-.++-
T Consensus 192 ~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~l----ksLv~~L~~--p~~~ir~~Ildll~ 265 (371)
T PF14664_consen 192 SLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGL----KSLVDSLRL--PNPEIRKAILDLLF 265 (371)
T ss_pred HHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHH----HHHHHHHcC--CCHHHHHHHHHHHH
Confidence 555444332 11122 4567788888888887776555554443344 334444432 23345555555555
Q ss_pred HhcC
Q psy14164 346 EVFE 349 (361)
Q Consensus 346 ~~f~ 349 (361)
..|.
T Consensus 266 dllr 269 (371)
T PF14664_consen 266 DLLR 269 (371)
T ss_pred HHHC
Confidence 5554
No 76
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.33 E-value=0.006 Score=60.48 Aligned_cols=184 Identities=15% Similarity=0.145 Sum_probs=132.0
Q ss_pred CCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHh
Q psy14164 112 DQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 191 (361)
Q Consensus 112 ~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~L 191 (361)
..+.+|+.||.-+..+++-.+.. .....|.+..++.+.++++..+|..|..+|..++--||. .+..+||+..|++.
T Consensus 80 ~~~~ER~QALkliR~~l~~~~~~-~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~ 155 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIKKGP-KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRA 155 (371)
T ss_pred CChHHHHHHHHHHHHHHHhcCCc-ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHH
Confidence 44689999999998888643333 334667889999999999999999999999999999985 67889999999998
Q ss_pred hccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC-------CH--HHHHHHHHHHHHHhcCCchHHH
Q psy14164 192 IEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK-------KE--KLVIKSCFLIACLCTDNNQVKQ 262 (361)
Q Consensus 192 L~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~-------~~--~v~~kA~~ll~~L~~~~~~~~~ 262 (361)
+-. ....+....+.++-.+.- +|...+-+...--++.++..+.+. +. ..-..+..+|..+..+=+-..-
T Consensus 156 l~d-~~~~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~ 233 (371)
T PF14664_consen 156 LID-GSFSISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLY 233 (371)
T ss_pred HHh-ccHhHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceee
Confidence 886 344566777777777764 454433333223455555444322 22 3556677788888775332222
Q ss_pred HHHh-CCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChH
Q psy14164 263 VLLS-MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPE 304 (361)
Q Consensus 263 ~l~~-~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~ 304 (361)
.-.. ...++.|+..|..+ ..++|+..+..+..+..-.+.
T Consensus 234 l~~~~~~~lksLv~~L~~p---~~~ir~~Ildll~dllrik~p 273 (371)
T PF14664_consen 234 LSMNDFRGLKSLVDSLRLP---NPEIRKAILDLLFDLLRIKPP 273 (371)
T ss_pred eecCCchHHHHHHHHHcCC---CHHHHHHHHHHHHHHHCCCCC
Confidence 2222 25788999999999 999999999999999976543
No 77
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.33 E-value=0.012 Score=53.69 Aligned_cols=184 Identities=13% Similarity=0.111 Sum_probs=108.9
Q ss_pred cCCCHHHHHHHHHHHHHHhhcC--HHHHHHHHhc--ChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhC
Q psy14164 151 EGSDPELRWRAAETVADIVQNN--PFSQNFIIQT--DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRD 226 (361)
Q Consensus 151 ~s~~~~vr~~Aa~~Lg~iaqnn--~~~q~~v~~~--g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~g 226 (361)
.+.+-+.|..|+.-|..++.++ ......+++. ..+..+...+.+ ....|.+.|+..|+.++++....+..++ ..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d-~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD-LRSKVSKTACQLLSDLARQLGSHFEPYA-DI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H-H---HHHHHHHHHHHHHHHHGGGGHHHH-HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence 5677889999999999998887 2222333221 455677777765 3457999999999999987666666664 45
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCc-HHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHH
Q psy14164 227 GFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGM-VEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEA 305 (361)
Q Consensus 227 gi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~-i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~ 305 (361)
.++.|+..+.++..-++..|..++..++...+-.. .+ +..+...+.+. ++.+|..++..|..++...+..
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~------~~~~~~l~~~~~~K---n~~vR~~~~~~l~~~l~~~~~~ 165 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSP------KILLEILSQGLKSK---NPQVREECAEWLAIILEKWGSD 165 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S----HHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH------HHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHccch
Confidence 68899999999889999999999999998643111 12 45566677777 9999999999999999877621
Q ss_pred HHhhccCcchHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHhc
Q psy14164 306 QSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEVF 348 (361)
Q Consensus 306 ~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~il~~~f 348 (361)
...+... ..+..++.-....+. +...+.++++.+++..|+
T Consensus 166 ~~~l~~~-~~~~~l~~~l~~~l~--D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 166 SSVLQKS-AFLKQLVKALVKLLS--DADPEVREAARECLWALY 205 (228)
T ss_dssp -GGG--H-HHHHHHHHHHHHHHT--SS-HHHHHHHHHHHHHHH
T ss_pred Hhhhccc-chHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHH
Confidence 1111111 112222222222222 345677777777776654
No 78
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.31 E-value=0.0062 Score=64.80 Aligned_cols=140 Identities=14% Similarity=0.191 Sum_probs=96.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEF 222 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f 222 (361)
++-+++...+.+.++|...=--|-..++.+|. .+++ +++.+.+=|.+ +++.+|-.|+.++|.+= ..++
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P~--~~lL---avNti~kDl~d-~N~~iR~~AlR~ls~l~------~~el 124 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLKPE--LALL---AVNTIQKDLQD-PNEEIRGFALRTLSLLR------VKEL 124 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHH--HHHH---HHHHHHhhccC-CCHHHHHHHHHHHHhcC------hHHH
Confidence 56666766677888888777777788888873 2222 45666666765 67788888888888761 2233
Q ss_pred HhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164 223 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD 301 (361)
Q Consensus 223 ~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~ 301 (361)
+ -..++++.+++.+++..||+.|+.+|..+-+-++ ....+.|.+..+..++... |+.+...|+.+|..+-..
T Consensus 125 ~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~~D~---dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 125 L-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELVADS---DPIVIANALASLAEIDPE 196 (757)
T ss_pred H-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHhhCC---CchHHHHHHHHHHHhchh
Confidence 3 2346778888888888888888888888865443 4555667777777777776 777777777777665533
No 79
>KOG4646|consensus
Probab=97.25 E-value=0.0091 Score=50.52 Aligned_cols=109 Identities=11% Similarity=0.058 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhh
Q psy14164 113 QKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI 192 (361)
Q Consensus 113 ~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL 192 (361)
+.+.|.....+|+.+.-+.-|=.-+..+..+..++..|..++..+.+.+...|.|+|- .+.....+.+.+++|.++..+
T Consensus 30 ~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~I~ea~g~plii~~l 108 (173)
T KOG4646|consen 30 NIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKFIREALGLPLIIFVL 108 (173)
T ss_pred cHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHHHHHhcCCceEEeec
Confidence 4577788888888888877777888899999999999999999999999999999995 677888999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy14164 193 EHDSNTTVQVKSLYAVSCLVRENEECLKEFI 223 (361)
Q Consensus 193 ~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~ 223 (361)
++ +...+.-.|+.++--|+-+...-...+.
T Consensus 109 ss-p~e~tv~sa~~~l~~l~~~~Rt~r~ell 138 (173)
T KOG4646|consen 109 SS-PPEITVHSAALFLQLLEFGERTERDELL 138 (173)
T ss_pred CC-ChHHHHHHHHHHHHHhcCcccchhHHhc
Confidence 97 5667777788888888776655544444
No 80
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.25 E-value=0.02 Score=59.23 Aligned_cols=138 Identities=16% Similarity=0.205 Sum_probs=93.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy14164 144 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFI 223 (361)
Q Consensus 144 ~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~ 223 (361)
..++..-+ .+...+..|+..|......-|..++.. +..++.|... .+..||+.|+-.|..+|++++.....+.
T Consensus 26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcED-ed~~iR~~aik~lp~~ck~~~~~v~kva 98 (556)
T PF05918_consen 26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCED-EDVQIRKQAIKGLPQLCKDNPEHVSKVA 98 (556)
T ss_dssp HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT--SSHHHHHHHHHHGGGG--T--T-HHHHH
T ss_pred HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhc-ccHHHHHHHHHhHHHHHHhHHHHHhHHH
Confidence 33444434 468899999999999999999988874 6679999985 6889999999999999999887766664
Q ss_pred hhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164 224 KRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD 301 (361)
Q Consensus 224 ~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~ 301 (361)
.+|+++|++++..-..-+-.++..|+..++. +.+..|...+.+...++..+||.++..|..-+..
T Consensus 99 -----DvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~ 163 (556)
T PF05918_consen 99 -----DVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKP 163 (556)
T ss_dssp -----HHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGG
T ss_pred -----HHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhh
Confidence 4889999998877777777777777776653 4455555555421122788999999888655543
No 81
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.19 E-value=0.001 Score=54.92 Aligned_cols=73 Identities=10% Similarity=0.137 Sum_probs=62.0
Q ss_pred ChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhc
Q psy14164 183 DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT 255 (361)
Q Consensus 183 g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~ 255 (361)
.++..|+++|..+.++.+..-||+-|+.++|++|.+...+-+.|+-..++++|.+++..||..|..++.-|..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4789999999655577888889999999999999987777778899999999999999999999999987764
No 82
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.002 Score=65.22 Aligned_cols=160 Identities=11% Similarity=0.134 Sum_probs=124.6
Q ss_pred HHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChh
Q psy14164 138 LKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEE 217 (361)
Q Consensus 138 ~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~ 217 (361)
......++|+++|+.|+..|...+...+.|.+---...+..+++.|.+..|++++.+ ++.++|++..|.+-.+.-++..
T Consensus 428 ~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s-KDdaLqans~wvlrHlmyncq~ 506 (743)
T COG5369 428 LDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS-KDDALQANSEWVLRHLMYNCQK 506 (743)
T ss_pred cccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc-chhhhhhcchhhhhhhhhcCcc
Confidence 334467889999999999999999999999887777789999999999999999996 6779999999999999988755
Q ss_pred h-HHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC---chHHHHHHhCC----cHHHHHHhccCCCCCCh-hHH
Q psy14164 218 C-LKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN---NQVKQVLLSMG----MVEQMCVLIDIEDALDT-EMN 288 (361)
Q Consensus 218 ~-~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~---~~~~~~l~~~g----~i~~Lv~lL~~~~~~d~-~~~ 288 (361)
. +-.|+...|+..++.....++.+||.....++.|++... ...++.+++.. +.+.|++-++.. ++ ++.
T Consensus 507 ~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~---np~~i~ 583 (743)
T COG5369 507 NEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEEN---NPMEIL 583 (743)
T ss_pred hhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhc---Cchhhh
Confidence 4 447888999999999999999999999999999999842 22333333222 345566666655 44 444
Q ss_pred HHHHHHHHHHHhcC
Q psy14164 289 EHLLSALASLIKDS 302 (361)
Q Consensus 289 e~al~aL~~L~~~~ 302 (361)
+. +..|.+++..+
T Consensus 584 ~~-~yilv~~aa~d 596 (743)
T COG5369 584 EG-CYILVRNAACD 596 (743)
T ss_pred hh-HHHHHHHHhcc
Confidence 44 66666666544
No 83
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.16 E-value=0.001 Score=54.95 Aligned_cols=82 Identities=22% Similarity=0.355 Sum_probs=65.0
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHH-HCCCHHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy14164 90 NSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFL-KMGGLPVLQPLLEGSDPELRWRAAETVADI 168 (361)
Q Consensus 90 ~~~~~~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~-~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~i 168 (361)
..+..++.+++|..+.+|.... +......|+.+|.++|....+...++ ++|+=..++.|++|++++||..|+.++..+
T Consensus 35 ~kf~~~~~~llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 35 DKFEENNFELLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp GGGSSGGGHHHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3344578999999999996533 45677789999999999888888776 677788899999999999999999999887
Q ss_pred hhcC
Q psy14164 169 VQNN 172 (361)
Q Consensus 169 aqnn 172 (361)
..+|
T Consensus 114 m~~~ 117 (119)
T PF11698_consen 114 MVNN 117 (119)
T ss_dssp HHHS
T ss_pred HHhc
Confidence 7554
No 84
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.12 E-value=0.029 Score=56.45 Aligned_cols=128 Identities=16% Similarity=0.207 Sum_probs=93.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHH-------------HHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHH
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFS-------------QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVS 209 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~-------------q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS 209 (361)
+..|+.+|.+ +++...|++.++-+....+.+ +|.+.. -.+|.|++-.... +...|...+.|||
T Consensus 273 ~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~-~~~~k~~yL~ALs 348 (415)
T PF12460_consen 273 LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEA-DDEIKSNYLTALS 348 (415)
T ss_pred HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhc-ChhhHHHHHHHHH
Confidence 5566777766 788999999999999874444 233322 3788998888863 4468999999999
Q ss_pred HHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHH
Q psy14164 210 CLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCV 275 (361)
Q Consensus 210 ~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~ 275 (361)
.++++-|...-.=.-...+|.|++.|..++..++..+...+..++.+.++....-++ .+|+.|++
T Consensus 349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~-sLI~~LL~ 413 (415)
T PF12460_consen 349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS-SLIPRLLK 413 (415)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHh
Confidence 999987755322222457899999999999999999999999999887655443221 44555544
No 85
>KOG2023|consensus
Probab=97.11 E-value=0.0072 Score=62.66 Aligned_cols=171 Identities=13% Similarity=0.151 Sum_probs=116.9
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHH-HHh-
Q psy14164 147 QPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKE-FIK- 224 (361)
Q Consensus 147 v~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~-f~~- 224 (361)
++.|..+++-||.-.=.+|.+++.. ...|.+ -.++|.|..+|.+ ++.....-|..||+-||.++....+. +..
T Consensus 96 l~~lgd~~~lIr~tvGivITTI~s~-~~~~~w---pelLp~L~~~L~s-~d~n~~EgA~~AL~KIcEDsa~~lds~~~~r 170 (885)
T KOG2023|consen 96 LHGLGDASPLIRATVGIVITTIAST-GGLQHW---PELLPQLCELLDS-PDYNTCEGAFGALQKICEDSAQFLDSDVLTR 170 (885)
T ss_pred HhhccCchHHHHhhhhheeeeeecc-cccccc---hhHHHHHHHHhcC-CcccccchhHHHHHHHHhhhHHHHhhhcccC
Confidence 3444456667776666666666643 223333 3589999999997 56688999999999999876554332 111
Q ss_pred --hCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164 225 --RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 225 --~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
.--+|.+++..+++++++|..|..++..+.-..+... ++.=..+++.+-.+-... ++.+|..+.++|..|+...
T Consensus 171 pl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal-~~~iD~Fle~lFalanD~---~~eVRk~vC~alv~Llevr 246 (885)
T KOG2023|consen 171 PLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQAL-YVHIDKFLEILFALANDE---DPEVRKNVCRALVFLLEVR 246 (885)
T ss_pred chHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHH-HHHHHHHHHHHHHHccCC---CHHHHHHHHHHHHHHHHhc
Confidence 1246888899999999999999999998765433221 111124666676666555 8999999999999999888
Q ss_pred hHHHHhhccCcchHHHHHHHHHHhhcChhh
Q psy14164 303 PEAQSLCRLEPLNLKFKLNFIKEKHAGNEV 332 (361)
Q Consensus 303 ~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e 332 (361)
|+.+. | .+..++|-.+...+.++|
T Consensus 247 ~dkl~----p--hl~~IveyML~~tqd~dE 270 (885)
T KOG2023|consen 247 PDKLV----P--HLDNIVEYMLQRTQDVDE 270 (885)
T ss_pred HHhcc----c--chHHHHHHHHHHccCcch
Confidence 76542 1 345566666666665543
No 86
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.08 E-value=0.0077 Score=60.45 Aligned_cols=118 Identities=12% Similarity=-0.019 Sum_probs=81.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEF 222 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f 222 (361)
+..|+..|.++++.||..++..||.+- ..+..+.|+.+|.+ .++.+|..++.+++...
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~~-~~p~vR~aal~al~~r~---------- 145 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG-----------GRQAEPWLEPLLAA-SEPPGRAIGLAALGAHR---------- 145 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC-----------chHHHHHHHHHhcC-CChHHHHHHHHHHHhhc----------
Confidence 788888888888889999999988532 23456777778875 46677777776665511
Q ss_pred HhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHH
Q psy14164 223 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASL 298 (361)
Q Consensus 223 ~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L 298 (361)
..-.+.+..+|++.+..|+..|+.++..|-.. ..++.|...+.+. +..+|..|+.++..+
T Consensus 146 --~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d~---~~~VR~aA~~al~~l 205 (410)
T TIGR02270 146 --HDPGPALEAALTHEDALVRAAALRALGELPRR-----------LSESTLRLYLRDS---DPEVRFAALEAGLLA 205 (410)
T ss_pred --cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHHcCC---CHHHHHHHHHHHHHc
Confidence 12234667778788888888888888776432 3455566667776 777777777777544
No 87
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.08 E-value=0.26 Score=47.72 Aligned_cols=194 Identities=22% Similarity=0.208 Sum_probs=119.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHH---CCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc---C
Q psy14164 99 ELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLK---MGGLPVLQPLLEGSDPELRWRAAETVADIVQN---N 172 (361)
Q Consensus 99 ~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~---~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn---n 172 (361)
.+++++.-+.... ...|+.+|..+..++... ...+|+. .-.+..+.+.++.+..+=+..|+++++-++-. .
T Consensus 44 ~L~~~Id~l~eK~--~~~Re~aL~~l~~~l~~~-~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g 120 (309)
T PF05004_consen 44 KLKEAIDLLTEKS--SSTREAALEALIRALSSR-YLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAG 120 (309)
T ss_pred HHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCC
Confidence 3677777776543 567888888888876432 2333432 12366677788777777788899998887533 2
Q ss_pred HHHHHHHHhcChHHHHHHhhccCC-CHHHHHHHHHHHHHHhc--C-ChhhHHHHHhhCcHHHH--HHhhcc---------
Q psy14164 173 PFSQNFIIQTDFLNLLLTSIEHDS-NTTVQVKSLYAVSCLVR--E-NEECLKEFIKRDGFSVL--LRCIQS--------- 237 (361)
Q Consensus 173 ~~~q~~v~~~g~l~~Ll~LL~~~~-~~~v~~~Al~ALS~l~r--~-~~~~~~~f~~~ggi~~L--v~lL~s--------- 237 (361)
+... .+++ ...|.|.+.+.... ...+|..++.||+-++. + .+......+ ..+..+ ...+++
T Consensus 121 ~~~~-ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~ 196 (309)
T PF05004_consen 121 EDSE-EIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAA 196 (309)
T ss_pred ccHH-HHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccC
Confidence 3333 3443 47888888887533 34677777777776543 2 222222111 112211 111221
Q ss_pred -CCHHHHHHHHHHHHHHhcCCch-HHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164 238 -KKEKLVIKSCFLIACLCTDNNQ-VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP 303 (361)
Q Consensus 238 -~~~~v~~kA~~ll~~L~~~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~ 303 (361)
++..+...|+.+.+-|++.-+. ...... ...++.|+.+|.++ |.++|..|-.+|.-|.....
T Consensus 197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~---d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 197 EDDAALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSD---DVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHhh
Confidence 2357888888777777766443 122222 34689999999999 99999999999988776544
No 88
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.01 E-value=0.26 Score=48.24 Aligned_cols=188 Identities=12% Similarity=0.188 Sum_probs=122.2
Q ss_pred CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhC---cHH
Q psy14164 153 SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRD---GFS 229 (361)
Q Consensus 153 ~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~g---gi~ 229 (361)
+++++--.+-.+|..++.. +.+...++....+..+.+.+.. ++-.|...|...+..+...|+.....|+..+ -+.
T Consensus 135 ~~~dial~~g~mlRec~k~-e~l~~~iL~~~~f~~ff~~~~~-~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~ 212 (335)
T PF08569_consen 135 ENPDIALNCGDMLRECIKH-ESLAKIILYSECFWKFFKYVQL-PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQ 212 (335)
T ss_dssp GSTTTHHHHHHHHHHHTTS-HHHHHHHHTSGGGGGHHHHTTS-SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHH
T ss_pred cCccccchHHHHHHHHHhh-HHHHHHHhCcHHHHHHHHHhcC-CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3455566666667766654 4445566666777777777765 5678999999999998777888888888766 345
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHhcCCch--H-HHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC---h
Q psy14164 230 VLLRCIQSKKEKLVIKSCFLIACLCTDNNQ--V-KQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS---P 303 (361)
Q Consensus 230 ~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~--~-~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~---~ 303 (361)
....+|.+++.-+|+.+.-+++.|+..... . .+++-+..-+..++.+|++. +..+|-.|...+.-.+... +
T Consensus 213 ~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~---sk~Iq~eAFhvFKvFVANp~K~~ 289 (335)
T PF08569_consen 213 KYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK---SKNIQFEAFHVFKVFVANPNKPP 289 (335)
T ss_dssp HHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S----HHHHHHHHHHHHHHHH-SS-BH
T ss_pred HHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc---chhhhHHHHHHHHHHHhCCCCCh
Confidence 778889999999999999999999975322 2 34555566799999999998 8999999999998888654 2
Q ss_pred HHHHhhccCcchHHHHHHHHHHhhcChhhhHHHHHHHHHHHH
Q psy14164 304 EAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLT 345 (361)
Q Consensus 304 ~~~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~il~ 345 (361)
.....-...+-.|...|.+-...-...+.+.+|-+|.-+-++
T Consensus 290 ~I~~iL~~Nr~kLl~fl~~f~~~~~~D~qf~~EK~~li~~i~ 331 (335)
T PF08569_consen 290 PIVDILIKNREKLLRFLKDFHTDRTDDEQFEDEKAYLIKQIE 331 (335)
T ss_dssp HHHHHHHHTHHHHHHHHHTTTTT--S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCccccHHHHHHHHHHHHH
Confidence 222222122212222222221111124466777666655544
No 89
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.00 E-value=0.14 Score=51.54 Aligned_cols=129 Identities=12% Similarity=-0.015 Sum_probs=88.7
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy14164 142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKE 221 (361)
Q Consensus 142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~ 221 (361)
..++++.+|+++++.||..|+++||.+-. ...++.|...+.+ .++.||..|+++++-+ |.+.+...
T Consensus 148 ~~~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d-~~~~VR~aA~~al~~l--G~~~A~~~ 213 (410)
T TIGR02270 148 PGPALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRD-SDPEVRFAALEAGLLA--GSRLAWGV 213 (410)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcC-CCHHHHHHHHHHHHHc--CCHhHHHH
Confidence 46788999999999999999999998653 3467778877775 6889999999999776 33433322
Q ss_pred HH---hhCc-------------------HHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccC
Q psy14164 222 FI---KRDG-------------------FSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDI 279 (361)
Q Consensus 222 f~---~~gg-------------------i~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~ 279 (361)
++ ...| ++.|+.+++. ..++..+++++..+-. + ..++.|+..+..
T Consensus 214 l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d--~~vr~~a~~AlG~lg~--p---------~av~~L~~~l~d 280 (410)
T TIGR02270 214 CRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQA--AATRREALRAVGLVGD--V---------EAAPWCLEAMRE 280 (410)
T ss_pred HHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcC--hhhHHHHHHHHHHcCC--c---------chHHHHHHHhcC
Confidence 22 1111 2333444443 2367777777665432 2 468888888874
Q ss_pred CCCCChhHHHHHHHHHHHHHhcC
Q psy14164 280 EDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 280 ~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
+ .++..|..++..|+.-.
T Consensus 281 ~-----~~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 281 P-----PWARLAGEAFSLITGMD 298 (410)
T ss_pred c-----HHHHHHHHHHHHhhCCC
Confidence 3 59999999999988644
No 90
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.00 E-value=0.0094 Score=57.76 Aligned_cols=138 Identities=19% Similarity=0.310 Sum_probs=98.0
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCC------
Q psy14164 142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVREN------ 215 (361)
Q Consensus 142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~------ 215 (361)
.++.+..+|.+.+..||..|+.+||.+- +| ..++.|+.++..+.+..||..|+++|..+--..
T Consensus 75 av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~---------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~ 143 (335)
T COG1413 75 AVPLLRELLSDEDPRVRDAAADALGELG--DP---------EAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLL 143 (335)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch---------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHH
Confidence 4788888888989999999999888652 22 367888888886567788888888888763211
Q ss_pred ------h----------h---hHHHHH-------hhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCc
Q psy14164 216 ------E----------E---CLKEFI-------KRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGM 269 (361)
Q Consensus 216 ------~----------~---~~~~f~-------~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~ 269 (361)
. + .+...+ +...++.++..+.+.+..+|..|+.++..+.... ..+
T Consensus 144 ~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~ 214 (335)
T COG1413 144 EALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEA 214 (335)
T ss_pred HHhccchhhhhhhhccchHHHHHHHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhH
Confidence 0 0 111111 1235678888888888899999999999887653 245
Q ss_pred HHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164 270 VEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 270 i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
...+...+..+ +..++..++.+|..+-...
T Consensus 215 ~~~l~~~~~~~---~~~vr~~~~~~l~~~~~~~ 244 (335)
T COG1413 215 ADLLVKALSDE---SLEVRKAALLALGEIGDEE 244 (335)
T ss_pred HHHHHHHhcCC---CHHHHHHHHHHhcccCcch
Confidence 56777778877 8888888887776665433
No 91
>KOG2259|consensus
Probab=96.96 E-value=0.011 Score=61.22 Aligned_cols=178 Identities=11% Similarity=0.060 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHhhcCcccHHHHHHCCC--------------HHHHHHhhcCCCHHHHHHHH---HHHHHHh--hcCHHH
Q psy14164 115 DICIGALDNLSDYICSIDYANDFLKMGG--------------LPVLQPLLEGSDPELRWRAA---ETVADIV--QNNPFS 175 (361)
Q Consensus 115 ~~~~~Al~~L~~lve~idna~~~~~~Gg--------------~~~Lv~LL~s~~~~vr~~Aa---~~Lg~ia--qnn~~~ 175 (361)
.+...++.-|.+++.+.|..-.-+...| +...+.++..++..||..|. |++||.. .-..+.
T Consensus 194 ~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 194 HDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred ccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 4455566668888887775522122222 66678889999999999985 4555554 111111
Q ss_pred HHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHH-----------------------------------
Q psy14164 176 QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLK----------------------------------- 220 (361)
Q Consensus 176 q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~----------------------------------- 220 (361)
.+.=+.-.++..+...++. -+-.||+.|+-+|+.+-.-+...+.
T Consensus 274 ~e~kl~D~aF~~vC~~v~D-~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRD-RSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE 352 (823)
T ss_pred hhhhhHHHHHHHHHHHHhc-CceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence 1111122356667777764 4567888888887766432222211
Q ss_pred ---------------HHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCCh
Q psy14164 221 ---------------EFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDT 285 (361)
Q Consensus 221 ---------------~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~ 285 (361)
.++.+|.-..+++.|.+.-..||+.|+..++.|+.+.|.+-.. .+..|+.++... ..
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE---~~ 424 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDE---IE 424 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccH---HH
Confidence 1222333356677777667899999999999999988866544 467889999887 88
Q ss_pred hHHHHHHHHHHHHHhc
Q psy14164 286 EMNEHLLSALASLIKD 301 (361)
Q Consensus 286 ~~~e~al~aL~~L~~~ 301 (361)
++|.+|+.+|..|+..
T Consensus 425 ~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 425 VVRLKAIFALTMISVH 440 (823)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999865
No 92
>KOG1061|consensus
Probab=96.95 E-value=0.0096 Score=62.60 Aligned_cols=145 Identities=17% Similarity=0.237 Sum_probs=119.2
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHH
Q psy14164 141 GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLK 220 (361)
Q Consensus 141 Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~ 220 (361)
+.++.++++....+.+++...---+.+.++..|..+ .+++..+++=..+ +++.+|..|+...+++--+
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d-~np~iR~lAlrtm~~l~v~------ 116 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCED-PNPLIRALALRTMGCLRVD------ 116 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCC-CCHHHHHHHhhceeeEeeh------
Confidence 348889999999999999999999999999999755 3467777776664 6789999999988887432
Q ss_pred HHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q psy14164 221 EFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK 300 (361)
Q Consensus 221 ~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~ 300 (361)
.+. .....+|.+++++++.-+|+.|+..+..+-.-+ .+...+.|+++.|-.++... ++.+...|+.+|..|..
T Consensus 117 ~i~-ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~---~p~VVAnAlaaL~eI~e 189 (734)
T KOG1061|consen 117 KIT-EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDS---NPMVVANALAALSEIHE 189 (734)
T ss_pred HHH-HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCC---CchHHHHHHHHHHHHHH
Confidence 222 234678999999999999999999999986544 45677889999999999977 89999999999999998
Q ss_pred cChH
Q psy14164 301 DSPE 304 (361)
Q Consensus 301 ~~~~ 304 (361)
.++.
T Consensus 190 ~~~~ 193 (734)
T KOG1061|consen 190 SHPS 193 (734)
T ss_pred hCCC
Confidence 8763
No 93
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.95 E-value=0.012 Score=47.08 Aligned_cols=89 Identities=11% Similarity=0.110 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc
Q psy14164 158 RWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS 237 (361)
Q Consensus 158 r~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s 237 (361)
|..++..|+.++..-+..-...++ ..+|+++..+.. ++..||..|+.+|.++++........++ ...+..|.+++.+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D-~d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDD-QDSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence 556677777776665554333333 489999999985 7889999999999999986544333322 4578889999999
Q ss_pred CCHHHHHHHHHH
Q psy14164 238 KKEKLVIKSCFL 249 (361)
Q Consensus 238 ~~~~v~~kA~~l 249 (361)
++..||.-|..+
T Consensus 80 ~d~~Vr~~a~~L 91 (97)
T PF12755_consen 80 PDENVRSAAELL 91 (97)
T ss_pred CchhHHHHHHHH
Confidence 999998877543
No 94
>KOG1059|consensus
Probab=96.93 E-value=0.15 Score=53.73 Aligned_cols=92 Identities=22% Similarity=0.232 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhcc
Q psy14164 115 DICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH 194 (361)
Q Consensus 115 ~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~ 194 (361)
-+.--||.-|..++ ..|-|+|+ .+-++.||+|+-+=+|..|.-++-.+.---|+. + .-.+|.|..-|..
T Consensus 124 ye~giAL~GLS~fv-TpdLARDL-----a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA---l--r~~FprL~EkLeD 192 (877)
T KOG1059|consen 124 YEVGLALSGLSCIV-TPDLARDL-----ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA---L--RPCFPRLVEKLED 192 (877)
T ss_pred chhhheeccccccc-CchhhHHH-----HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh---H--hhhHHHHHHhccC
Confidence 34445666666665 56777775 345677788888888888887777766544432 2 2357777777774
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhh
Q psy14164 195 DSNTTVQVKSLYAVSCLVRENEEC 218 (361)
Q Consensus 195 ~~~~~v~~~Al~ALS~l~r~~~~~ 218 (361)
+|+.|+..|+..|+-++|.+|.+
T Consensus 193 -pDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 193 -PDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred -CCchHHHHHHHHHHHHHhhCCcc
Confidence 67788888888888888877765
No 95
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.92 E-value=0.29 Score=49.23 Aligned_cols=195 Identities=15% Similarity=0.210 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhh-cCCCHHHHHHHHHHH-----HHHhh
Q psy14164 97 GAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLL-EGSDPELRWRAAETV-----ADIVQ 170 (361)
Q Consensus 97 ~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL-~s~~~~vr~~Aa~~L-----g~iaq 170 (361)
.+.+.+.+....+.. +...+..++..+.-++--......+. ..+..+..-+ .......+..+..++ |-+..
T Consensus 188 ~~ll~~l~~~~~~~~-~~~~~~~~~~~la~LvNK~~~~~~l~--~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R 264 (415)
T PF12460_consen 188 EELLQSLLNLALSSE-DEFSRLAALQLLASLVNKWPDDDDLD--EFLDSLLQSISSSEDSELRPQALEILIWITKALVMR 264 (415)
T ss_pred HHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCCChhhHH--HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHc
Confidence 345556655555533 35677888887777774422222111 1122222222 233444455554444 33455
Q ss_pred cCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhh-------------HHHHHhhCcHHHHHHhhcc
Q psy14164 171 NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEEC-------------LKEFIKRDGFSVLLRCIQS 237 (361)
Q Consensus 171 nn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~-------------~~~f~~~ggi~~Lv~lL~s 237 (361)
++|...+ .+..|+.+|.+ +.+...|+-++.-++.+.+.. .+.|+ .-.+|.|++..+.
T Consensus 265 ~~~~~~~------~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~~~~ 334 (415)
T PF12460_consen 265 GHPLATE------LLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF-TQVLPKLLEGFKE 334 (415)
T ss_pred CCchHHH------HHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH-HHHHHHHHHHHhh
Confidence 5665443 46778899986 467888899998888773332 22333 3457788888887
Q ss_pred CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHH
Q psy14164 238 KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQS 307 (361)
Q Consensus 238 ~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~ 307 (361)
.+...|..-..++++++.+-|...-.-.=..++|.|++-|..+ |.+++..++.+|..++...++.+.
T Consensus 335 ~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~---~~~v~~s~L~tL~~~l~~~~~~i~ 401 (415)
T PF12460_consen 335 ADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP---DADVLLSSLETLKMILEEAPELIS 401 (415)
T ss_pred cChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHcCHHHHH
Confidence 7766888888999999998663321111124788999999998 999999999999999999877654
No 96
>KOG0213|consensus
Probab=96.86 E-value=0.0067 Score=63.54 Aligned_cols=143 Identities=12% Similarity=0.148 Sum_probs=101.6
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcC------Chhh
Q psy14164 145 VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRE------NEEC 218 (361)
Q Consensus 145 ~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~------~~~~ 218 (361)
.++..|++.++.+|.+|+..++.++---..|++.-.=...--.|...|.. ..+++.-..+.||.+|+.- .|+.
T Consensus 803 tiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylge-eypEvLgsILgAikaI~nvigm~km~pPi 881 (1172)
T KOG0213|consen 803 TILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGE-EYPEVLGSILGAIKAIVNVIGMTKMTPPI 881 (1172)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCc-ccHHHHHHHHHHHHHHHHhccccccCCCh
Confidence 34557889999999999999999986444444332211122335566664 3556666555555555432 2333
Q ss_pred HHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchH---HHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHH
Q psy14164 219 LKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQV---KQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL 295 (361)
Q Consensus 219 ~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~---~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL 295 (361)
.+.+|.|..+|++...||+....-++..++...++. ++.+ .++--|+++|++. ...+|..|..++
T Consensus 882 ------~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLkah---kK~iRRaa~nTf 949 (1172)
T KOG0213|consen 882 ------KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKAH---KKEIRRAAVNTF 949 (1172)
T ss_pred ------hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHH---HHHHHHHHHhhh
Confidence 467899999999999999999999999999887653 4444 3566788888887 888999998888
Q ss_pred HHHHh
Q psy14164 296 ASLIK 300 (361)
Q Consensus 296 ~~L~~ 300 (361)
..|+.
T Consensus 950 G~Iak 954 (1172)
T KOG0213|consen 950 GYIAK 954 (1172)
T ss_pred hHHHH
Confidence 88876
No 97
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.72 E-value=0.053 Score=47.17 Aligned_cols=126 Identities=13% Similarity=0.208 Sum_probs=93.7
Q ss_pred HHHHHhcChHHHHHHhhccCCC-----HHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC--CHHHHHHHHH
Q psy14164 176 QNFIIQTDFLNLLLTSIEHDSN-----TTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCF 248 (361)
Q Consensus 176 q~~v~~~g~l~~Ll~LL~~~~~-----~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~--~~~v~~kA~~ 248 (361)
...|++.||+..|++++.++.. ..+-..++.|...+.-|.--.+ ..+...-+..++...... +..+.+.|..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 4568899999999999997552 3555666667666665533333 233333445555555543 7899999999
Q ss_pred HHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHH
Q psy14164 249 LIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEA 305 (361)
Q Consensus 249 ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~ 305 (361)
.+-+++.+++.....+.+.=-++.|+..|..+ +.+++.+++..+-+|....+..
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~---~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVS---NQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcC---CHHHHHHHHHHHHHHHhcCChH
Confidence 99999998776666666655699999999998 9999999999999999877653
No 98
>KOG1222|consensus
Probab=96.69 E-value=0.04 Score=55.50 Aligned_cols=120 Identities=16% Similarity=0.238 Sum_probs=92.9
Q ss_pred cccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHH
Q psy14164 131 IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSC 210 (361)
Q Consensus 131 idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~ 210 (361)
.+|+..+..+|.++.|+++..+.+++++...+..+=|++-. ...+..++..|.+|.|..+|.++....+..+.+|-+|+
T Consensus 335 ~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~ 413 (791)
T KOG1222|consen 335 DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSC 413 (791)
T ss_pred ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhcc
Confidence 47899999999999999999999999999999999999854 34677789999999999999987777788888888887
Q ss_pred HhcCChhhHHHHHhhCcHHHHHHhh-ccCCHHHHHHHHHHHHHHhc
Q psy14164 211 LVRENEECLKEFIKRDGFSVLLRCI-QSKKEKLVIKSCFLIACLCT 255 (361)
Q Consensus 211 l~r~~~~~~~~f~~~ggi~~Lv~lL-~s~~~~v~~kA~~ll~~L~~ 255 (361)
+......|.-...++.++..+ ...+.+|-.....+.-||+.
T Consensus 414 ----dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~l 455 (791)
T KOG1222|consen 414 ----DDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCL 455 (791)
T ss_pred ----CcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHh
Confidence 444555566666777776643 34455555555444455553
No 99
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.68 E-value=0.27 Score=43.41 Aligned_cols=93 Identities=19% Similarity=0.249 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHH
Q psy14164 154 DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLR 233 (361)
Q Consensus 154 ~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~ 233 (361)
++.||..++.++|.++..-|..-+ ..+|.+...|.+ +++.||+.|+..|+.++....-..+ ...+..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D-~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRD-EDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHH
Confidence 578999999999999988775333 368899999996 6889999999999999864322111 112367778
Q ss_pred hhccCCHHHHHHHHHHHHHHhcC
Q psy14164 234 CIQSKKEKLVIKSCFLIACLCTD 256 (361)
Q Consensus 234 lL~s~~~~v~~kA~~ll~~L~~~ 256 (361)
++.+++..|+.-|..++..+...
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999876
No 100
>KOG2023|consensus
Probab=96.68 E-value=0.039 Score=57.45 Aligned_cols=155 Identities=14% Similarity=0.111 Sum_probs=109.6
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHH-HHhc---ChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChh
Q psy14164 142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF-IIQT---DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEE 217 (361)
Q Consensus 142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~-v~~~---g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~ 217 (361)
++|.|..+|.+++....+.|..+|..++...+..-+. +... -.+|.+++.+++ +++.+|..|+.++-..+-..+.
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h-~spkiRs~A~~cvNq~i~~~~q 207 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH-PSPKIRSHAVGCVNQFIIIQTQ 207 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC-CChhHHHHHHhhhhheeecCcH
Confidence 4667778899999999999999999999887654322 1111 268999999998 5789999999999887765444
Q ss_pred hHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHH
Q psy14164 218 CLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS 297 (361)
Q Consensus 218 ~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~ 297 (361)
+...-++ .-++.|..+-.+.++.||+..|.++..|+.-.++-..-- =.++++.++..-... |..+--.|.....+
T Consensus 208 al~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ph-l~~IveyML~~tqd~---dE~VALEACEFwla 282 (885)
T KOG2023|consen 208 ALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPH-LDNIVEYMLQRTQDV---DENVALEACEFWLA 282 (885)
T ss_pred HHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccc-hHHHHHHHHHHccCc---chhHHHHHHHHHHH
Confidence 3222111 123455555566799999999999999987544211110 136788888777766 77777777787888
Q ss_pred HHhcC
Q psy14164 298 LIKDS 302 (361)
Q Consensus 298 L~~~~ 302 (361)
++...
T Consensus 283 ~aeqp 287 (885)
T KOG2023|consen 283 LAEQP 287 (885)
T ss_pred HhcCc
Confidence 87654
No 101
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.66 E-value=0.05 Score=48.14 Aligned_cols=95 Identities=15% Similarity=0.273 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCc-HHHHHHh
Q psy14164 198 TTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGM-VEQMCVL 276 (361)
Q Consensus 198 ~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~-i~~Lv~l 276 (361)
+.+|..++-+++-++.-+|...+.+ ++.+..+|.++++.||+.|..++++|..++..- -.|- +..++.+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~-----~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik-----~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPY-----LPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK-----VKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhH-----HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee-----ehhhhhHHHHHH
Confidence 5799999999999988787665544 678899999999999999999999999864311 1233 3677788
Q ss_pred ccCCCCCChhHHHHHHHHHHHHHhc-ChHH
Q psy14164 277 IDIEDALDTEMNEHLLSALASLIKD-SPEA 305 (361)
Q Consensus 277 L~~~~~~d~~~~e~al~aL~~L~~~-~~~~ 305 (361)
|..+ +++++..|...+..+... .|+.
T Consensus 72 l~D~---~~~Ir~~A~~~~~e~~~~~~~~~ 98 (178)
T PF12717_consen 72 LVDE---NPEIRSLARSFFSELLKKRNPNI 98 (178)
T ss_pred HcCC---CHHHHHHHHHHHHHHHHhccchH
Confidence 8877 999999999999999987 5543
No 102
>KOG1060|consensus
Probab=96.63 E-value=0.79 Score=48.92 Aligned_cols=167 Identities=12% Similarity=0.156 Sum_probs=116.1
Q ss_pred CHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhh
Q psy14164 113 QKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI 192 (361)
Q Consensus 113 ~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL 192 (361)
.+..|.+|+..+..++...+++.++ +|.+|+...+.+.+||...---|-.-|.++|... ++ -|..+=+-|
T Consensus 48 kd~~KleAmKRIia~iA~G~dvS~~-----Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA--LL---SIntfQk~L 117 (968)
T KOG1060|consen 48 KDSLKLEAMKRIIALIAKGKDVSLL-----FPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA--LL---SINTFQKAL 117 (968)
T ss_pred ccHHHHHHHHHHHHHHhcCCcHHHH-----HHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce--ee---eHHHHHhhh
Confidence 3468889999888888877777664 7888888888888888877666666666555322 11 244455556
Q ss_pred ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHH
Q psy14164 193 EHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ 272 (361)
Q Consensus 193 ~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~ 272 (361)
. +++.-+|..|+.++|+|=- +.+.-++ +-.+.++..++...||+.|+.+|-.|-+-+++.+..++ +.
T Consensus 118 ~-DpN~LiRasALRvlSsIRv---p~IaPI~----llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~-----e~ 184 (968)
T KOG1060|consen 118 K-DPNQLIRASALRVLSSIRV---PMIAPIM----LLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE-----EV 184 (968)
T ss_pred c-CCcHHHHHHHHHHHHhcch---hhHHHHH----HHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH-----HH
Confidence 5 4788999999999999732 1221121 33456677788999999999999999988888887654 44
Q ss_pred HHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHh
Q psy14164 273 MCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSL 308 (361)
Q Consensus 273 Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~ 308 (361)
+-.||... ++-+.-.|+.|... .||+.++.
T Consensus 185 I~~LLaD~---splVvgsAv~AF~e---vCPerldL 214 (968)
T KOG1060|consen 185 IKKLLADR---SPLVVGSAVMAFEE---VCPERLDL 214 (968)
T ss_pred HHHHhcCC---CCcchhHHHHHHHH---hchhHHHH
Confidence 55666666 77777766666644 34655443
No 103
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.60 E-value=0.064 Score=54.56 Aligned_cols=174 Identities=14% Similarity=0.191 Sum_probs=106.4
Q ss_pred HHHHHHhhcCcccHHHHHHCCCHHHHHHh----------hcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHH
Q psy14164 121 LDNLSDYICSIDYANDFLKMGGLPVLQPL----------LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLT 190 (361)
Q Consensus 121 l~~L~~lve~idna~~~~~~Gg~~~Lv~L----------L~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~ 190 (361)
|..|.-+..+..++..+..-.|+..|+++ ...++..+...|++||+|+.-++|..|+.+++.|+.+.++.
T Consensus 2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~ 81 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE 81 (446)
T ss_pred HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence 44555555555555555555555555553 34578899999999999999999999999999999999999
Q ss_pred hhccCC----CHHHH---HHHHHHHHHHhcCChhhHHHHHh-hCcHHHHHHhhcc-----------------CCHHHHHH
Q psy14164 191 SIEHDS----NTTVQ---VKSLYAVSCLVRENEECLKEFIK-RDGFSVLLRCIQS-----------------KKEKLVIK 245 (361)
Q Consensus 191 LL~~~~----~~~v~---~~Al~ALS~l~r~~~~~~~~f~~-~ggi~~Lv~lL~s-----------------~~~~v~~k 245 (361)
.|+... +..+. .+-++-++. ..+..+..+++ ++|+..|+..|.. .+..+..+
T Consensus 82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa---~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E 158 (446)
T PF10165_consen 82 RLKNYSDSSQPSDVEFLDSRLLFLLTA---LRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE 158 (446)
T ss_pred HHHcccccCCChhHHHHHHHHHHHHhc---CChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence 998642 22332 333333333 34444555554 5788888776642 14456677
Q ss_pred HHHHHHHHhcCCchHHHHHHhCCcHHHHHHhcc----C--CCCCChhHHHHHHHHHHHH
Q psy14164 246 SCFLIACLCTDNNQVKQVLLSMGMVEQMCVLID----I--EDALDTEMNEHLLSALASL 298 (361)
Q Consensus 246 A~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~----~--~~~~d~~~~e~al~aL~~L 298 (361)
++-++.|++...+.... -.....++.|+.+|. . ++.......-++..+|.++
T Consensus 159 iLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nl 216 (446)
T PF10165_consen 159 ILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNL 216 (446)
T ss_pred HHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCC
Confidence 77888888765433222 011223333333322 1 1122345666777777666
No 104
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.60 E-value=0.021 Score=45.67 Aligned_cols=93 Identities=12% Similarity=0.280 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHh--CCcHHHHHHhc
Q psy14164 200 VQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLS--MGMVEQMCVLI 277 (361)
Q Consensus 200 v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~--~g~i~~Lv~lL 277 (361)
.|+-++.+|+.++-+-+......+ .-.+++++.++.+.+.+||--||.++++++.. .+..++. ..++..|++++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLS 77 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 367788999988877666555554 46789999999999999999999999999864 2222221 35678888888
Q ss_pred cCCCCCChhHHHHHHHHHHHHHh
Q psy14164 278 DIEDALDTEMNEHLLSALASLIK 300 (361)
Q Consensus 278 ~~~~~~d~~~~e~al~aL~~L~~ 300 (361)
..+ +..++..| ..|-.+++
T Consensus 78 ~D~---d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 78 ADP---DENVRSAA-ELLDRLLK 96 (97)
T ss_pred cCC---chhHHHHH-HHHHHHhc
Confidence 877 78877654 66666654
No 105
>KOG1248|consensus
Probab=96.53 E-value=0.26 Score=54.45 Aligned_cols=213 Identities=14% Similarity=0.106 Sum_probs=130.6
Q ss_pred hHHHHHHHHHhhc--CCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhhcCccc-HHHHHHCCCHHHHHHhhcCCCH
Q psy14164 81 NRGFLLDALNSMM--VNVGAELEKIIKTLKENQDQ--KDICIGALDNLSDYICSIDY-ANDFLKMGGLPVLQPLLEGSDP 155 (361)
Q Consensus 81 ~~~~L~eal~~~~--~~~~~~mk~~l~~L~~~~~~--~~~~~~Al~~L~~lve~idn-a~~~~~~Gg~~~Lv~LL~s~~~ 155 (361)
..+.|++++..-. .-..+.+..+...|.+...+ ...+..++..|..+++..++ -.+|+.- .++-++=+++.-+.
T Consensus 674 ~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k-~I~EvIL~~Ke~n~ 752 (1176)
T KOG1248|consen 674 AYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK-LIPEVILSLKEVNV 752 (1176)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHhcccccH
Confidence 4566777666511 11233344444444443322 35666777777777766551 1233322 24444444477788
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHhcC------hHHHHHHhhccC---CCHHHHHHHHHHHHHHhcCChhhHHHHHhhC
Q psy14164 156 ELRWRAAETVADIVQNNPFSQNFIIQTD------FLNLLLTSIEHD---SNTTVQVKSLYAVSCLVRENEECLKEFIKRD 226 (361)
Q Consensus 156 ~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g------~l~~Ll~LL~~~---~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~g 226 (361)
.-|..|..+|-.++. -+...+.| .+..++..+... ....++...+.|++.+...+......-.-.+
T Consensus 753 ~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~ 827 (1176)
T KOG1248|consen 753 KARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEK 827 (1176)
T ss_pred HHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 889999888888873 11122223 444555554432 2223333347888888764433333222344
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164 227 GFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 227 gi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
-+..+...|.+....+++-|..+|.-++...|+..-.....-+++.+..+++.. ...++.++...|..|...+
T Consensus 828 li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~---k~~~r~Kvr~LlekLirkf 900 (1176)
T KOG1248|consen 828 LISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH---KIKVRKKVRLLLEKLIRKF 900 (1176)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHh
Confidence 556667778899999999999999999998776554444445788888888876 7889999988888888755
No 106
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.53 E-value=0.2 Score=53.69 Aligned_cols=162 Identities=11% Similarity=0.106 Sum_probs=105.7
Q ss_pred CHHhHHHHHHHHHhhc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCH
Q psy14164 78 NEANRGFLLDALNSMM--VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDP 155 (361)
Q Consensus 78 s~e~~~~L~eal~~~~--~~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~ 155 (361)
+.++..-++..++.|. .|-..+.-+.++... +.+.+.|.-.---|+.+-+. .. +... =.+..+.+=|+++++
T Consensus 33 ~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~--trd~ElKrL~ylYl~~yak~-~P--~~~l-LavNti~kDl~d~N~ 106 (757)
T COG5096 33 DYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVA--TRDVELKRLLYLYLERYAKL-KP--ELAL-LAVNTIQKDLQDPNE 106 (757)
T ss_pred hHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHhcc-CH--HHHH-HHHHHHHhhccCCCH
Confidence 4455666666666666 232334444444444 23334443222222222221 11 1111 146677777889999
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhh
Q psy14164 156 ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCI 235 (361)
Q Consensus 156 ~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL 235 (361)
.+|..|.+.++.+= .++ ++ ..+++++.+++.+ +.+.||++|+.||..+=+-.+ ..+-+.|-+..+..++
T Consensus 107 ~iR~~AlR~ls~l~--~~e----l~-~~~~~~ik~~l~d-~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~ 175 (757)
T COG5096 107 EIRGFALRTLSLLR--VKE----LL-GNIIDPIKKLLTD-PHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV 175 (757)
T ss_pred HHHHHHHHHHHhcC--hHH----HH-HHHHHHHHHHccC-CcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh
Confidence 99999999999873 222 22 2378899999997 678999999999999975433 4566667778888888
Q ss_pred ccCCHHHHHHHHHHHHHHhcC
Q psy14164 236 QSKKEKLVIKSCFLIACLCTD 256 (361)
Q Consensus 236 ~s~~~~v~~kA~~ll~~L~~~ 256 (361)
.+.++.|...|...+..+..+
T Consensus 176 ~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 176 ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred hCCCchHHHHHHHHHHHhchh
Confidence 899999999999998887544
No 107
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.52 E-value=0.0048 Score=38.42 Aligned_cols=29 Identities=41% Similarity=0.668 Sum_probs=26.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQN 171 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn 171 (361)
+|.+++++++++++||..|+++||.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999999864
No 108
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=96.51 E-value=0.025 Score=49.99 Aligned_cols=110 Identities=16% Similarity=0.230 Sum_probs=80.6
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChh-hHHHHHhhCcHHHHHHhhcc---------CCHHHHHHHHHHHHHH
Q psy14164 184 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEE-CLKEFIKRDGFSVLLRCIQS---------KKEKLVIKSCFLIACL 253 (361)
Q Consensus 184 ~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~-~~~~f~~~ggi~~Lv~lL~s---------~~~~v~~kA~~ll~~L 253 (361)
....+++.+.+.+. ..+.+..|.-..|.++. -.+.|++.||+..|+.+|.. .+..+...+..++..|
T Consensus 67 ~p~~~i~~L~~~~~---~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 67 SPEWYIKKLKSRPS---TSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHTTT-----HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHccCc---cHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 44556777765322 22778888877776654 58899999999999998863 3568889999999999
Q ss_pred hcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164 254 CTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 299 (361)
Q Consensus 254 ~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~ 299 (361)
+....-....+...+++..|+..|.++ +..++..++..|..+.
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~---~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSP---NIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TT---SHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCC---CHHHHHHHHHHHHHHH
Confidence 886544444444678999999999998 9999999999887764
No 109
>KOG1991|consensus
Probab=96.49 E-value=0.27 Score=53.42 Aligned_cols=117 Identities=17% Similarity=0.184 Sum_probs=76.5
Q ss_pred HHHHHHHHHhcCC------CCHHHHHHHHHHHHHhhcCcc----cHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy14164 99 ELEKIIKTLKENQ------DQKDICIGALDNLSDYICSID----YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI 168 (361)
Q Consensus 99 ~mk~~l~~L~~~~------~~~~~~~~Al~~L~~lve~id----na~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~i 168 (361)
.|.=++.+|.... .....|..||-.+..+++-+. .++.+..+ .++.+...++|+.--+|.+|||+++..
T Consensus 411 ~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~f-lv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 411 ILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYF-LVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred HHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHH-HHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 3455555666222 334566666666666553332 23333332 356667788999999999999999999
Q ss_pred hhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhh
Q psy14164 169 VQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEEC 218 (361)
Q Consensus 169 aqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~ 218 (361)
+.-+=..+..+ ..++....+.|.++.+..||+.|+.||.+++.+++.+
T Consensus 490 ~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~ 537 (1010)
T KOG1991|consen 490 SSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQA 537 (1010)
T ss_pred HhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhh
Confidence 84322222222 2356667777776677789999999999999987755
No 110
>KOG1824|consensus
Probab=96.49 E-value=0.14 Score=55.32 Aligned_cols=193 Identities=14% Similarity=0.135 Sum_probs=124.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCH-HHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHH--
Q psy14164 99 ELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGL-PVLQPLLEGSDPELRWRAAETVADIVQNNPFS-- 175 (361)
Q Consensus 99 ~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~-~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~-- 175 (361)
...+.+..+.++..++..++-|+-.|.++=.-.| .....++ ..++..++|++.+|+.+|+.+||+++-+|-..
T Consensus 818 ~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~----~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yL 893 (1233)
T KOG1824|consen 818 LATKLIQDLQSPKSSDSIKVFALLSLGELGRRKD----LSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYL 893 (1233)
T ss_pred HHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCC----CCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHH
Confidence 3455556666666666777777766666543332 1222233 35678999999999999999999999865321
Q ss_pred ------------HHHHH---------h------cChHHHHHHhhccC---CCHHHHHHHHHHHHHHhcCChhhHHHHHhh
Q psy14164 176 ------------QNFII---------Q------TDFLNLLLTSIEHD---SNTTVQVKSLYAVSCLVRENEECLKEFIKR 225 (361)
Q Consensus 176 ------------q~~v~---------~------~g~l~~Ll~LL~~~---~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ 225 (361)
+++++ . ...++.+|.+|... ..+..|--.+-+|+-++-.+|.
T Consensus 894 pfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epe-------- 965 (1233)
T KOG1824|consen 894 PFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPE-------- 965 (1233)
T ss_pred HHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChH--------
Confidence 00000 0 11233344433211 1123343344444444443332
Q ss_pred CcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHH
Q psy14164 226 DGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEA 305 (361)
Q Consensus 226 ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~ 305 (361)
.-+|.|-..+.++....|.-+..++.+..+.+|.-.+.+.+ ..|.....+++.+ |..+|..|+.++...+.+.|..
T Consensus 966 sLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dp---Dl~VrrvaLvv~nSaahNKpsl 1041 (1233)
T KOG1824|consen 966 SLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDP---DLEVRRVALVVLNSAAHNKPSL 1041 (1233)
T ss_pred HHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCC---chhHHHHHHHHHHHHHccCHhH
Confidence 23577778888889999999999998888877766665554 4567788889999 9999999999999999888876
Q ss_pred HH
Q psy14164 306 QS 307 (361)
Q Consensus 306 ~~ 307 (361)
++
T Consensus 1042 Ir 1043 (1233)
T KOG1824|consen 1042 IR 1043 (1233)
T ss_pred HH
Confidence 64
No 111
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.48 E-value=0.0082 Score=61.80 Aligned_cols=148 Identities=14% Similarity=0.229 Sum_probs=98.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHH--HHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhh-H
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQN--FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEEC-L 219 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~--~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~-~ 219 (361)
+..++.+|+|+.+.+|.+|+...|.++.--..|-+ .+.+.| -.|..-|.. ..+++.-..+.||.+|..-..-. .
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge-~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGE-DYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCc-ccHHHHHHHHHHHHHHhhhhccccc
Confidence 34456789999999999999999998742211111 111122 223444443 34566666666666654321100 0
Q ss_pred HHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCch---HHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHH
Q psy14164 220 KEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQ---VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALA 296 (361)
Q Consensus 220 ~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~---~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~ 296 (361)
+.= -.|.+|.|..+|++...||+....-++.-++...|+ .++.+ .+.--|+++|.+. +.++|..|-.++.
T Consensus 683 qpP-i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~---nKeiRR~A~~tfG 755 (975)
T COG5181 683 QPP-ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSW---NKEIRRNATETFG 755 (975)
T ss_pred CCc-hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHh---hHHHHHhhhhhhh
Confidence 000 157789999999999999999999999999988765 34443 2556688888888 8899999988888
Q ss_pred HHHh
Q psy14164 297 SLIK 300 (361)
Q Consensus 297 ~L~~ 300 (361)
.|+.
T Consensus 756 ~Is~ 759 (975)
T COG5181 756 CISR 759 (975)
T ss_pred hHHh
Confidence 8775
No 112
>KOG4535|consensus
Probab=96.44 E-value=0.013 Score=58.74 Aligned_cols=179 Identities=16% Similarity=0.177 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHhhcCcccHHHHH-HCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhh----c--CHHHHHHHHhcChHHHH
Q psy14164 116 ICIGALDNLSDYICSIDYANDFL-KMGGLPVLQPLLEGSDPELRWRAAETVADIVQ----N--NPFSQNFIIQTDFLNLL 188 (361)
Q Consensus 116 ~~~~Al~~L~~lve~idna~~~~-~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaq----n--n~~~q~~v~~~g~l~~L 188 (361)
.+.+|+..+..+|-....+.+.. -..+...++.-|.+..-..|..|+|.+|||+. | ||..+..=+..-.+..+
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~ 486 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKM 486 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 45666777766666555554432 12345666667777788899999999999864 3 33333322222345556
Q ss_pred HHhhcc--CCCHHHHHHHHHHHHHHhcCChhhHHHHHhh-------CcHHHHHHh-hccCCHHHHHHHHHHHHHHhcCCc
Q psy14164 189 LTSIEH--DSNTTVQVKSLYAVSCLVRENEECLKEFIKR-------DGFSVLLRC-IQSKKEKLVIKSCFLIACLCTDNN 258 (361)
Q Consensus 189 l~LL~~--~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~-------ggi~~Lv~l-L~s~~~~v~~kA~~ll~~L~~~~~ 258 (361)
+++... .....|+.+|+.+|+|+.. ..+.++.. +.+..+... +-....+||-+||.+++||..+..
T Consensus 487 ~~~A~~~~Ad~dkV~~navraLgnllQ----vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a 562 (728)
T KOG4535|consen 487 LRSAIEASADKDKVKSNAVRALGNLLQ----FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPA 562 (728)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHhhHHH----HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcc
Confidence 665432 1234899999999999864 22223221 222222221 223578999999999999988632
Q ss_pred h-HHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q psy14164 259 Q-VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK 300 (361)
Q Consensus 259 ~-~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~ 300 (361)
- +...=..--+++.|+.|+.+-+ +=++|..|..+|..-.+
T Consensus 563 ~~lq~~~wA~~~F~~L~~Lv~~~~--NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 563 LPLQTAPWASQAFNALTSLVTSCK--NFKVRIRAAAALSVPGK 603 (728)
T ss_pred ccccCCCchHHHHHHHHHHHHHhc--cceEeehhhhhhcCCCC
Confidence 1 1110001124667777776542 56788888888865443
No 113
>KOG4413|consensus
Probab=96.40 E-value=0.11 Score=50.29 Aligned_cols=182 Identities=16% Similarity=0.200 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhcCcc-cH----HHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy14164 96 VGAELEKIIKTLKENQ--DQKDICIGALDNLSDYICSID-YA----NDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI 168 (361)
Q Consensus 96 ~~~~mk~~l~~L~~~~--~~~~~~~~Al~~L~~lve~id-na----~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~i 168 (361)
.+.+....+..|...- ++...|.-++..+..++|+-| |+ ..++..|.++.++.|+-.++.+|-..|...|..+
T Consensus 76 gahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikri 155 (524)
T KOG4413|consen 76 GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRI 155 (524)
T ss_pred chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 3444555555555433 445789999999999999988 33 2355778899999999999999999999999999
Q ss_pred hhcCHHHHHHHHhcChHHHH--HHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc-CCHHHHHH
Q psy14164 169 VQNNPFSQNFIIQTDFLNLL--LTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS-KKEKLVIK 245 (361)
Q Consensus 169 aqnn~~~q~~v~~~g~l~~L--l~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s-~~~~v~~k 245 (361)
+- -|..-..+.+...+..+ ..|... .+.-+|...+.-|--|..-++.....+-..|-+..|..-|+. .|.-|+..
T Consensus 156 al-fpaaleaiFeSellDdlhlrnlaak-cndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVian 233 (524)
T KOG4413|consen 156 AL-FPAALEAIFESELLDDLHLRNLAAK-CNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIAN 233 (524)
T ss_pred Hh-cHHHHHHhcccccCChHHHhHHHhh-hhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhh
Confidence 85 45555666666655443 333333 344667766666665555566677777778888888877877 47788888
Q ss_pred HHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCC
Q psy14164 246 SCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE 280 (361)
Q Consensus 246 A~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~ 280 (361)
..-+++.|+. ..+.++++.+.|+|..+++++...
T Consensus 234 ciElvteLae-teHgreflaQeglIdlicnIIsGa 267 (524)
T KOG4413|consen 234 CIELVTELAE-TEHGREFLAQEGLIDLICNIISGA 267 (524)
T ss_pred HHHHHHHHHH-HhhhhhhcchhhHHHHHHHHhhCC
Confidence 8888888876 346788888999999999999876
No 114
>KOG1241|consensus
Probab=96.37 E-value=0.034 Score=58.57 Aligned_cols=154 Identities=13% Similarity=0.078 Sum_probs=112.8
Q ss_pred CCHHHHHHhhcC-------CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhh----ccCCCHHHHHHHHHHHH
Q psy14164 141 GGLPVLQPLLEG-------SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI----EHDSNTTVQVKSLYAVS 209 (361)
Q Consensus 141 Gg~~~Lv~LL~s-------~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL----~~~~~~~v~~~Al~ALS 209 (361)
+.+|.|+.+|.. ++-.+-..|--||.-.+|. .+...+|+.+..+ ++ ++-.-|..|+.|.+
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~--------~~D~Iv~~Vl~Fiee~i~~-pdwr~reaavmAFG 389 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC--------VGDDIVPHVLPFIEENIQN-PDWRNREAAVMAFG 389 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH--------hcccchhhhHHHHHHhcCC-cchhhhhHHHHHHH
Confidence 456778888764 1234667777777777653 2334455555544 44 56678889999999
Q ss_pred HHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHH-HHHHhCCcHHHHHHhccCCCCCChhHH
Q psy14164 210 CLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVK-QVLLSMGMVEQMCVLIDIEDALDTEMN 288 (361)
Q Consensus 210 ~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~-~~l~~~g~i~~Lv~lL~~~~~~d~~~~ 288 (361)
++.-|-.+....-+-.+++|.++.++.+++.-++.-++|.+..++..-++.+ ....-.+.+..++.-|.. .+.+-
T Consensus 390 SIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D----ePrva 465 (859)
T KOG1241|consen 390 SILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND----EPRVA 465 (859)
T ss_pred hhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh----CchHH
Confidence 9999877766666678999999999998899999999999999998755332 223334566777776664 68899
Q ss_pred HHHHHHHHHHHhcChHHHH
Q psy14164 289 EHLLSALASLIKDSPEAQS 307 (361)
Q Consensus 289 e~al~aL~~L~~~~~~~~~ 307 (361)
.++.+++.+|+..++++..
T Consensus 466 ~N~CWAf~~Laea~~eA~~ 484 (859)
T KOG1241|consen 466 SNVCWAFISLAEAAYEAAV 484 (859)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 9999999999987766543
No 115
>KOG1789|consensus
Probab=96.35 E-value=0.34 Score=53.16 Aligned_cols=180 Identities=17% Similarity=0.230 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHhhc-CcccHHHHH----HCCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHH
Q psy14164 115 DICIGALDNLSDYIC-SIDYANDFL----KMGGLPVLQPLLE-GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLL 188 (361)
Q Consensus 115 ~~~~~Al~~L~~lve-~idna~~~~----~~Gg~~~Lv~LL~-s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~L 188 (361)
+...-+|.+|.+++. +.|-|..|. -+|-++.+..+|. +.++.|+..|+.+|.-++. |..|-..+.+.|.+..|
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHH
Confidence 345556777777764 567776653 3577888888885 5888999999999987665 55577778889999999
Q ss_pred HHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhc-cCCHHHHHHHHHHHHHHhcC---CchHH---
Q psy14164 189 LTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQ-SKKEKLVIKSCFLIACLCTD---NNQVK--- 261 (361)
Q Consensus 189 l~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~-s~~~~v~~kA~~ll~~L~~~---~~~~~--- 261 (361)
+.+|.+. ++.|..++..|-.++. ++....+-..+||+..|...+- +++...|..|+.++..|... +|.++
T Consensus 1819 L~lLHS~--PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1819 LTLLHSQ--PSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred HHHHhcC--hHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence 9999874 4677777766666665 5666677788999988887664 56789999999999999864 33221
Q ss_pred --------HHHHhCCcHHHHHHhccCCCCC-----ChhHHHHHHHHHHHHH
Q psy14164 262 --------QVLLSMGMVEQMCVLIDIEDAL-----DTEMNEHLLSALASLI 299 (361)
Q Consensus 262 --------~~l~~~g~i~~Lv~lL~~~~~~-----d~~~~e~al~aL~~L~ 299 (361)
...+.. ..+..+..++.+.+. ++..+.++-..+..++
T Consensus 1896 ~kFLP~~f~d~~RD-~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~ 1945 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRD-SPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMV 1945 (2235)
T ss_pred HHhchHHHHHHHhc-CHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHH
Confidence 112222 236777777765111 2234455555555554
No 116
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.34 E-value=0.084 Score=49.55 Aligned_cols=104 Identities=13% Similarity=0.195 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHh
Q psy14164 198 TTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVL 276 (361)
Q Consensus 198 ~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s-~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~l 276 (361)
......|+..|-.+|--+|+.+..|-+..++..|+++|.. .+..++..+..++.+++..+|...+.|-+.+++..++.+
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 3556778888888888899999999999999999999954 589999999999999988899999999999999999999
Q ss_pred ccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164 277 IDIEDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 277 L~~~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
+++. ..+.+++-+++..|.-.+...
T Consensus 185 lk~~-~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 185 LKSK-STDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred Hccc-cccHHHhHHHHHHHHHHHccc
Confidence 9875 346789889998887776543
No 117
>KOG3036|consensus
Probab=96.33 E-value=0.35 Score=44.95 Aligned_cols=211 Identities=15% Similarity=0.157 Sum_probs=134.0
Q ss_pred CCCHHHHHHHHhhcCCCCCCCCCCcccccCCCCHHhHHH--HH-HHHHhhcCCHHHHHHHHHHHHhcCC---CC---HHH
Q psy14164 46 PSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGF--LL-DALNSMMVNVGAELEKIIKTLKENQ---DQ---KDI 116 (361)
Q Consensus 46 ~~~l~~LL~w~~~~s~~~~~~~~~~~~~~~~~s~e~~~~--L~-eal~~~~~~~~~~mk~~l~~L~~~~---~~---~~~ 116 (361)
..+-.++-.|.++-..|+.-.+ ....+++.+..+ |. ..+.++ ...+-++.+++.+.-... -+ ...
T Consensus 22 ~~~~dk~~~~i~~l~~~p~rE~-----aL~ELskkre~~~dlA~~lW~s~-g~~~~LLqEivaiYp~l~p~~l~~~qsnR 95 (293)
T KOG3036|consen 22 ASNNDKAYQLILSLVSPPTREM-----ALLELSKKREPFPDLAPMLWHSF-GTMVALLQEIVAIYPSLSPPTLTPAQSNR 95 (293)
T ss_pred cccccchhhHHHHhhCCchHHH-----HHHHHHHhccCCccccHHHHHhc-chHHHHHHHHHhcccccCCCCCCccccch
Confidence 3455668899999877653221 122233222210 11 122332 344667777777643222 11 234
Q ss_pred HHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhc-----CCCHHHHHHHHHHHHHHhhcCHH-HHHHHHhcChHHHHHH
Q psy14164 117 CIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLE-----GSDPELRWRAAETVADIVQNNPF-SQNFIIQTDFLNLLLT 190 (361)
Q Consensus 117 ~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~-----s~~~~vr~~Aa~~Lg~iaqnn~~-~q~~v~~~g~l~~Ll~ 190 (361)
.-.||.-|..+....|....|.+...=-.|..+|. .+..-+|-.++.+||.++++.+. +-..++..+++|..++
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 57788888888888999999998875444555654 36678999999999999998654 5556678899999999
Q ss_pred hhccCCCHHHHHHHHHHHHHHhcCChh------hHHHHHhhC-cH-HHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHH
Q psy14164 191 SIEHDSNTTVQVKSLYAVSCLVRENEE------CLKEFIKRD-GF-SVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQ 262 (361)
Q Consensus 191 LL~~~~~~~v~~~Al~ALS~l~r~~~~------~~~~f~~~g-gi-~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~ 262 (361)
.+..+ ++.-+.-|++.+.-|.-+..- ..+.|...+ .+ ..+.++.+.++.++-+.+..+...|+. +|..+.
T Consensus 176 ime~G-SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-nprar~ 253 (293)
T KOG3036|consen 176 IMESG-SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-NPRARA 253 (293)
T ss_pred HHhcc-cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CHHHHH
Confidence 99974 567788888888877654221 133444322 12 234445556788888888888777755 455555
Q ss_pred HH
Q psy14164 263 VL 264 (361)
Q Consensus 263 ~l 264 (361)
.+
T Consensus 254 aL 255 (293)
T KOG3036|consen 254 AL 255 (293)
T ss_pred HH
Confidence 44
No 118
>KOG2999|consensus
Probab=96.27 E-value=0.23 Score=50.91 Aligned_cols=162 Identities=16% Similarity=0.251 Sum_probs=119.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCC----HHHHHHHHHHHHHHh
Q psy14164 94 VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSD----PELRWRAAETVADIV 169 (361)
Q Consensus 94 ~~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~----~~vr~~Aa~~Lg~ia 169 (361)
.++...-+.+++++.+++ ...+..|+.+|..+.-+...+..|++..|+..|..++.+.. .++...++++...+.
T Consensus 79 ~sp~~~a~~i~e~l~~~~--~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elm 156 (713)
T KOG2999|consen 79 ASPSHYAKRIMEILTEGN--NISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELM 156 (713)
T ss_pred cCchHHHHHHHHHHhCCC--cHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence 456667788999998853 35666699999999988899999999999999999998754 467777777766655
Q ss_pred hcCHHHHHHHHhcChHHHHHHhhcc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHH
Q psy14164 170 QNNPFSQNFIIQTDFLNLLLTSIEH-DSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCF 248 (361)
Q Consensus 170 qnn~~~q~~v~~~g~l~~Ll~LL~~-~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ 248 (361)
...-..- ..+...++.....+..- -.+..+-..|+.-|-+++-+.+.-.+.+.+.--+..|+..|+..+.+++..|..
T Consensus 157 ehgvvsW-~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aia 235 (713)
T KOG2999|consen 157 EHGVVSW-ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIA 235 (713)
T ss_pred hhceeee-eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHH
Confidence 4322111 11122233333333321 123467778888888999888877777888889999999999999999999999
Q ss_pred HHHHHhcCCc
Q psy14164 249 LIACLCTDNN 258 (361)
Q Consensus 249 ll~~L~~~~~ 258 (361)
++..+...-+
T Consensus 236 l~nal~~~a~ 245 (713)
T KOG2999|consen 236 LLNALFRKAP 245 (713)
T ss_pred HHHHHHhhCC
Confidence 9999987744
No 119
>KOG0414|consensus
Probab=96.27 E-value=0.1 Score=57.46 Aligned_cols=144 Identities=16% Similarity=0.236 Sum_probs=113.0
Q ss_pred CCH-HHHHHhhc----CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCC
Q psy14164 141 GGL-PVLQPLLE----GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVREN 215 (361)
Q Consensus 141 Gg~-~~Lv~LL~----s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~ 215 (361)
|-+ |.++...+ .++++++.+|.-+||.+.--..... .--+|.|+..+...+++.+|.+++-+++-++--+
T Consensus 918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 444 44555663 4689999999999999875443322 2368999999997788999999999999988767
Q ss_pred hhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHH
Q psy14164 216 EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL 295 (361)
Q Consensus 216 ~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL 295 (361)
|.-.+.+- +.|..-|+..+..||+-|...+++|...+ .+.-.|.+.-++.+|..+ +..++..|=...
T Consensus 993 pnlie~~T-----~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~---~~~IsdlAk~FF 1059 (1251)
T KOG0414|consen 993 PNLIEPWT-----EHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDP---NAEISDLAKSFF 1059 (1251)
T ss_pred ccccchhh-----HHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCC---cHHHHHHHHHHH
Confidence 76555543 45677788899999999999999998653 444579999999999999 999999888777
Q ss_pred HHHHhcC
Q psy14164 296 ASLIKDS 302 (361)
Q Consensus 296 ~~L~~~~ 302 (361)
..|...+
T Consensus 1060 ~Els~k~ 1066 (1251)
T KOG0414|consen 1060 KELSSKG 1066 (1251)
T ss_pred HHhhhcc
Confidence 7777655
No 120
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.21 E-value=0.084 Score=51.08 Aligned_cols=136 Identities=19% Similarity=0.224 Sum_probs=100.2
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHH
Q psy14164 141 GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLK 220 (361)
Q Consensus 141 Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~ 220 (361)
-.++.++.++.+++..+|..|++.++.+-. .-++|.|..++.. .+..+|..|+++|+.+ +++.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d-~~~~vr~~a~~aLg~~--~~~~--- 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSD-EDPRVRDAAADALGEL--GDPE--- 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcC-CCHHHHHHHHHHHHcc--CChh---
Confidence 368889999999999999999999776542 2378999999986 6779999999988876 2232
Q ss_pred HHHhhCcHHHHHHhhc-cCCHHHHHHHHHHHHHHhcCC-----------ch--------------HHH----HHH---hC
Q psy14164 221 EFIKRDGFSVLLRCIQ-SKKEKLVIKSCFLIACLCTDN-----------NQ--------------VKQ----VLL---SM 267 (361)
Q Consensus 221 ~f~~~ggi~~Lv~lL~-s~~~~v~~kA~~ll~~L~~~~-----------~~--------------~~~----~l~---~~ 267 (361)
.++.|+.+|. +.+..||..|++++..+-... +. ++. .+. ..
T Consensus 106 ------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~ 179 (335)
T COG1413 106 ------AVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDP 179 (335)
T ss_pred ------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCCh
Confidence 3566677787 578999999999888775432 00 111 111 22
Q ss_pred CcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164 268 GMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 268 g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
..++.+..++... +..+|..+..+|..+....
T Consensus 180 ~~~~~l~~~l~~~---~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 180 EAIPLLIELLEDE---DADVRRAAASALGQLGSEN 211 (335)
T ss_pred hhhHHHHHHHhCc---hHHHHHHHHHHHHHhhcch
Confidence 3466777777777 7788888888888888764
No 121
>KOG0212|consensus
Probab=96.20 E-value=0.17 Score=51.99 Aligned_cols=209 Identities=13% Similarity=0.131 Sum_probs=123.7
Q ss_pred HHHHHHHhhc-CCHHHHHHHHHHHHhcCC-CC---HHHHHHHHHHHHHhhc--CcccHHHHHHCCCHHHHHHhhcCCCHH
Q psy14164 84 FLLDALNSMM-VNVGAELEKIIKTLKENQ-DQ---KDICIGALDNLSDYIC--SIDYANDFLKMGGLPVLQPLLEGSDPE 156 (361)
Q Consensus 84 ~L~eal~~~~-~~~~~~mk~~l~~L~~~~-~~---~~~~~~Al~~L~~lve--~idna~~~~~~Gg~~~Lv~LL~s~~~~ 156 (361)
.+++....+. .++.+.|.+++..|.+.- .+ ...| .+|--++-..- ..+.+. .-.+.++|++.|+..++..
T Consensus 23 elEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rk-GgLiGlAA~~iaLg~~~~~--Y~~~iv~Pv~~cf~D~d~~ 99 (675)
T KOG0212|consen 23 ELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRK-GGLIGLAAVAIALGIKDAG--YLEKIVPPVLNCFSDQDSQ 99 (675)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHhccCccccccc-chHHHHHHHHHHhccccHH--HHHHhhHHHHHhccCccce
Confidence 3555566665 678999999999765422 11 1222 33333333321 334444 4456799999999999999
Q ss_pred HHHHHHHHHHHHhhcCH----------------------------------HHHHHHHhcC---hHHHHHHhhcc---CC
Q psy14164 157 LRWRAAETVADIVQNNP----------------------------------FSQNFIIQTD---FLNLLLTSIEH---DS 196 (361)
Q Consensus 157 vr~~Aa~~Lg~iaqnn~----------------------------------~~q~~v~~~g---~l~~Ll~LL~~---~~ 196 (361)
||-.||..+-|++.--. -.++.+.+.. -++.++.+|+. ..
T Consensus 100 vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~ 179 (675)
T KOG0212|consen 100 VRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVI 179 (675)
T ss_pred eeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcC
Confidence 99999999999874300 0011111111 12222222221 12
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHh--hCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC---CchHHHHHHhCCcHH
Q psy14164 197 NTTVQVKSLYAVSCLVRENEECLKEFIK--RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD---NNQVKQVLLSMGMVE 271 (361)
Q Consensus 197 ~~~v~~~Al~ALS~l~r~~~~~~~~f~~--~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~---~~~~~~~l~~~g~i~ 271 (361)
++..|...+.=|.-+-. .+-. .|+. ..-++.|...|...+..||.-+-.+++.++.+ .|+.. --...++
T Consensus 180 n~~tR~flv~Wl~~Lds--~P~~-~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~---d~~~~i~ 253 (675)
T KOG0212|consen 180 NPMTRQFLVSWLYVLDS--VPDL-EMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM---DYDDMIN 253 (675)
T ss_pred CchHHHHHHHHHHHHhc--CCcH-HHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc---Ccccchh
Confidence 33444444444443321 1111 1221 12345677778888999998888888877754 34332 1235688
Q ss_pred HHHHhccCCCCCChhHHHHHHHHHHHHHhcChH
Q psy14164 272 QMCVLIDIEDALDTEMNEHLLSALASLIKDSPE 304 (361)
Q Consensus 272 ~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~ 304 (361)
.++.-+.++ ++.++.+|+.-+..++.-.+.
T Consensus 254 vlv~~l~ss---~~~iq~~al~Wi~efV~i~g~ 283 (675)
T KOG0212|consen 254 VLVPHLQSS---EPEIQLKALTWIQEFVKIPGR 283 (675)
T ss_pred hccccccCC---cHHHHHHHHHHHHHHhcCCCc
Confidence 889999998 999999999999888876654
No 122
>KOG2734|consensus
Probab=96.16 E-value=0.86 Score=45.70 Aligned_cols=209 Identities=14% Similarity=0.181 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC---------HHHHHHHHhcCh
Q psy14164 114 KDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN---------PFSQNFIIQTDF 184 (361)
Q Consensus 114 ~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn---------~~~q~~v~~~g~ 184 (361)
.-+...+++.+--+....|---.|+++.|++.|+.||.|.+.+|-...+..+-.++--+ ...-+++++.++
T Consensus 98 E~dLhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~v 177 (536)
T KOG2734|consen 98 EVDLHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQV 177 (536)
T ss_pred hccHHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccH
Confidence 34567778888888888888889999999999999999999999999999988876431 133456778899
Q ss_pred HHHHHHhhccCCCHHHH------HHHHHHHHHHhcCChhhHHHHHhhCcHHHHHH-hhcc-CCHHHHHHHHHHHHHHhcC
Q psy14164 185 LNLLLTSIEHDSNTTVQ------VKSLYAVSCLVRENEECLKEFIKRDGFSVLLR-CIQS-KKEKLVIKSCFLIACLCTD 256 (361)
Q Consensus 185 l~~Ll~LL~~~~~~~v~------~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~-lL~s-~~~~v~~kA~~ll~~L~~~ 256 (361)
++.|++-+.. -+++++ ..++.-+-|++--.+.....+.+.|-+..|.. +-.. +-..-+.-|.-.++-+...
T Consensus 178 laLLvqnveR-LdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~ 256 (536)
T KOG2734|consen 178 LALLVQNVER-LDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQN 256 (536)
T ss_pred HHHHHHHHHH-hhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhcc
Confidence 9999998764 223333 34455566777655666667777777776655 3333 2345556666667767776
Q ss_pred CchHHHHHHhCCcHHHHHHhccCCC------CCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHH
Q psy14164 257 NNQVKQVLLSMGMVEQMCVLIDIED------ALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFI 323 (361)
Q Consensus 257 ~~~~~~~l~~~g~i~~Lv~lL~~~~------~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~ 323 (361)
+.+.+..+-..+++..++.-|..-. ....++.++...+|++++......-..-...++.+.+++.+.
T Consensus 257 s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~ 329 (536)
T KOG2734|consen 257 SDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE 329 (536)
T ss_pred CchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH
Confidence 6667777778888888887765421 113467888888888888765443333344445555555544
No 123
>KOG1991|consensus
Probab=96.08 E-value=0.37 Score=52.35 Aligned_cols=167 Identities=10% Similarity=0.225 Sum_probs=100.5
Q ss_pred CCHHhHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhc-----
Q psy14164 77 MNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLE----- 151 (361)
Q Consensus 77 ~s~e~~~~L~eal~~~~~~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~----- 151 (361)
+++++.+..++ |+.+.+++-+.+..+..... .+|+.-+-.++. -.-+..|- |.++.++..|.
T Consensus 359 ~~d~deelwe~-------DP~EYiR~~~Di~ed~~sp~---~Aa~~~l~~~~~-KR~ke~l~--k~l~F~~~Il~~~~~~ 425 (1010)
T KOG1991|consen 359 FNDEDEELWEE-------DPYEYIRKKFDIFEDGYSPD---TAALDFLTTLVS-KRGKETLP--KILSFIVDILTRYKEA 425 (1010)
T ss_pred CCcccHHHHhc-------CHHHHHHhcCchhcccCCCc---HHHHHHHHHHHH-hcchhhhh--hHHHHHHHHHHhhccc
Confidence 44455555555 77777777777776654331 233333333332 11122222 34666677666
Q ss_pred -C--CCHHHHHHHHHHHHHHhh----cCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHh-cCChhhHHHHH
Q psy14164 152 -G--SDPELRWRAAETVADIVQ----NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV-RENEECLKEFI 223 (361)
Q Consensus 152 -s--~~~~vr~~Aa~~Lg~iaq----nn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~-r~~~~~~~~f~ 223 (361)
. .++.-+.-|++++|+++. +.|. . ..++.=.++++...+++ +---+|.+|||.++..+ -+.+.. ..+
T Consensus 426 ~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~-~-~~mE~flv~hVfP~f~s-~~g~Lrarac~vl~~~~~~df~d~-~~l- 500 (1010)
T KOG1991|consen 426 SPPNKNPRQKDGALRMVGSLASILLKKSPY-K-SQMEYFLVNHVFPEFQS-PYGYLRARACWVLSQFSSIDFKDP-NNL- 500 (1010)
T ss_pred CCCccChhhhhhHHHHHHHHHHHHccCCch-H-HHHHHHHHHHhhHhhcC-chhHHHHHHHHHHHHHHhccCCCh-HHH-
Confidence 2 345666779999999873 2221 1 11222245555556665 44589999999999998 333221 222
Q ss_pred hhCcHHHHHHhhc-cCCHHHHHHHHHHHHHHhcCCchHHH
Q psy14164 224 KRDGFSVLLRCIQ-SKKEKLVIKSCFLIACLCTDNNQVKQ 262 (361)
Q Consensus 224 ~~ggi~~Lv~lL~-s~~~~v~~kA~~ll~~L~~~~~~~~~ 262 (361)
...+.....+|. +.+..|+..|+.++..+.++.+....
T Consensus 501 -~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e 539 (1010)
T KOG1991|consen 501 -SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADE 539 (1010)
T ss_pred -HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhh
Confidence 346677788888 77899999999999999998664433
No 124
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.05 E-value=0.13 Score=52.31 Aligned_cols=131 Identities=14% Similarity=0.156 Sum_probs=89.7
Q ss_pred CHHHHHHHHhcChHHHHHHhh---------ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC----
Q psy14164 172 NPFSQNFIIQTDFLNLLLTSI---------EHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK---- 238 (361)
Q Consensus 172 n~~~q~~v~~~g~l~~Ll~LL---------~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~---- 238 (361)
++...+.++...++..|+++- ....+..+...|+-+|+|++-.++.+++.|.+.|+.+.++..|+..
T Consensus 11 d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~ 90 (446)
T PF10165_consen 11 DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSS 90 (446)
T ss_pred CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccC
Confidence 455556666667777777776 4446779999999999999999999999999999999999999865
Q ss_pred -CHHHH---HHHHHHHHHHhcCCchHHHHHHhC-CcHHHHHHhccCC----C---C-------CChhHHHHHHHHHHHHH
Q psy14164 239 -KEKLV---IKSCFLIACLCTDNNQVKQVLLSM-GMVEQMCVLIDIE----D---A-------LDTEMNEHLLSALASLI 299 (361)
Q Consensus 239 -~~~v~---~kA~~ll~~L~~~~~~~~~~l~~~-g~i~~Lv~lL~~~----~---~-------~d~~~~e~al~aL~~L~ 299 (361)
+..+. .+..|++++ ..+..+..+++. +++..++..|... + . .+.....-+|.++.++.
T Consensus 91 ~~~d~~Fl~~RLLFLlTa---~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit 167 (446)
T PF10165_consen 91 QPSDVEFLDSRLLFLLTA---LRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNIT 167 (446)
T ss_pred CChhHHHHHHHHHHHHhc---CChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhh
Confidence 44444 344444443 345566666544 6777666655432 0 0 12334455677777887
Q ss_pred hcChHH
Q psy14164 300 KDSPEA 305 (361)
Q Consensus 300 ~~~~~~ 305 (361)
..++..
T Consensus 168 ~~~~~~ 173 (446)
T PF10165_consen 168 LHYPKS 173 (446)
T ss_pred hccCcc
Confidence 766643
No 125
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=96.03 E-value=0.039 Score=51.01 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=73.2
Q ss_pred CHHHHHHHHhhcCCCCCCCCCCcccccCCCCHHhHHHHHHHHHhhcCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy14164 48 NLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNV--GAELEKIIKTLKENQDQKDICIGALDNLS 125 (361)
Q Consensus 48 ~l~~LL~w~~~~s~~~~~~~~~~~~~~~~~s~e~~~~L~eal~~~~~~~--~~~mk~~l~~L~~~~~~~~~~~~Al~~L~ 125 (361)
=+.|||+|++-.+.....+=+ ..++..++||.|.-. |+|..+.+.| +++ +|..+.. .+ ++
T Consensus 110 ildGLLHWaVcpsa~A~Dpfp-~~~~~~~lSPqrlaL--EaLcKLsV~e~NVDl------iLaTpp~---sR------lE 171 (257)
T PF12031_consen 110 ILDGLLHWAVCPSAEAQDPFP-TAGPHSPLSPQRLAL--EALCKLSVIENNVDL------ILATPPF---SR------LE 171 (257)
T ss_pred HHHHHHHHHhccchhccCCCC-CCCCCCCCCHHHHHH--HHHHHhheeccCcce------eeeCCCH---HH------HH
Confidence 479999999987653322221 113345788866553 6666665322 111 1222211 12 22
Q ss_pred HhhcCcccHHHHHHCCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCHHHH-HHHHhcChHHHHHHhhcc
Q psy14164 126 DYICSIDYANDFLKMGGLPVLQPLLE-GSDPELRWRAAETVADIVQNNPFSQ-NFIIQTDFLNLLLTSIEH 194 (361)
Q Consensus 126 ~lve~idna~~~~~~Gg~~~Lv~LL~-s~~~~vr~~Aa~~Lg~iaqnn~~~q-~~v~~~g~l~~Ll~LL~~ 194 (361)
.+ +..|+++|. ..+...|+.|.-+|.++++...... ....+.+.+..|+..+..
T Consensus 172 ~l---------------~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~ 227 (257)
T PF12031_consen 172 RL---------------FHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIED 227 (257)
T ss_pred HH---------------HHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHH
Confidence 22 456677774 5788999999999999999887765 555678999999999985
No 126
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=96.02 E-value=0.041 Score=41.59 Aligned_cols=63 Identities=13% Similarity=0.208 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy14164 158 RWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEF 222 (361)
Q Consensus 158 r~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f 222 (361)
...|+|++|+++.. +.-...+-+.++++.++++..+.+..++|-.|.|+|+=+++ +....+.+
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L 66 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEIL 66 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHH
Confidence 46799999999974 44555666789999999999987888999999999998887 44444433
No 127
>KOG1062|consensus
Probab=95.91 E-value=0.14 Score=54.39 Aligned_cols=154 Identities=17% Similarity=0.236 Sum_probs=107.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEF 222 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f 222 (361)
.|-+.++|++.++-||..|+-|...+....|..-+.| ++...++|.+ .+..|-...+.-+-.||.-++.....|
T Consensus 144 apeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL~e-k~hGVL~~~l~l~~e~c~~~~~~l~~f 217 (866)
T KOG1062|consen 144 APEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLLCE-KHHGVLIAGLHLITELCKISPDALSYF 217 (866)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHHhh-cCCceeeeHHHHHHHHHhcCHHHHHHH
Confidence 4566779999999999999999999999888766554 5666777764 455677777777777887777777777
Q ss_pred HhhCcHHHHHHhhcc---------------CCHHHHHHHHHHHHHHhcCCchHHHHHH----------------------
Q psy14164 223 IKRDGFSVLLRCIQS---------------KKEKLVIKSCFLIACLCTDNNQVKQVLL---------------------- 265 (361)
Q Consensus 223 ~~~ggi~~Lv~lL~s---------------~~~~v~~kA~~ll~~L~~~~~~~~~~l~---------------------- 265 (361)
-+ -++-|+..|+. +++=+|.++..++.-|-+++++..+.+-
T Consensus 218 r~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILY 295 (866)
T KOG1062|consen 218 RD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILY 295 (866)
T ss_pred HH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHH
Confidence 65 44444444431 3677788887777766655442211110
Q ss_pred ----------hC-C----cHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHH
Q psy14164 266 ----------SM-G----MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQS 307 (361)
Q Consensus 266 ----------~~-g----~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~ 307 (361)
.. | .+..|.++|.+. |..+|=.+|.+|...++..|++++
T Consensus 296 E~V~TI~~I~~~~~LrvlainiLgkFL~n~---d~NirYvaLn~L~r~V~~d~~avq 349 (866)
T KOG1062|consen 296 ECVRTIMDIRSNSGLRVLAINILGKFLLNR---DNNIRYVALNMLLRVVQQDPTAVQ 349 (866)
T ss_pred HHHHHHHhccCCchHHHHHHHHHHHHhcCC---ccceeeeehhhHHhhhcCCcHHHH
Confidence 01 1 245667777777 888888888888888888876544
No 128
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=95.89 E-value=0.75 Score=44.56 Aligned_cols=149 Identities=15% Similarity=0.084 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHHHHhhcCHHHHHHHHhc-------C----hHHHHHHhhc---c--CCCHHHHHHHHHHHHHHhcCChh
Q psy14164 154 DPELRWRAAETVADIVQNNPFSQNFIIQT-------D----FLNLLLTSIE---H--DSNTTVQVKSLYAVSCLVRENEE 217 (361)
Q Consensus 154 ~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~-------g----~l~~Ll~LL~---~--~~~~~v~~~Al~ALS~l~r~~~~ 217 (361)
.-++|.+|+.|+-....+|+..|..+++. + ....|+.-|- . ..++---..|+..++.++++++.
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 56899999999999999999999999854 1 1112444332 1 12444456899999999999998
Q ss_pred hHHHHHhh------C------cHHHHHHhhcc-----CCHHHHHHHHHHHHHHhcCCchHHHHHHhCC-cHHHHHHhccC
Q psy14164 218 CLKEFIKR------D------GFSVLLRCIQS-----KKEKLVIKSCFLIACLCTDNNQVKQVLLSMG-MVEQMCVLIDI 279 (361)
Q Consensus 218 ~~~~f~~~------g------gi~~Lv~lL~s-----~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g-~i~~Lv~lL~~ 279 (361)
+.....+. . -++.+..+|.. .+.+++.--..++..-+.+++.....|++.+ .++.|+.....
T Consensus 131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~ 210 (312)
T PF04869_consen 131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQ 210 (312)
T ss_dssp HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS-
T ss_pred HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhc
Confidence 86666542 1 13445555543 3778888778888887888898888888776 69999998654
Q ss_pred CCCCChhHHHHHHHHHHHHHhcC
Q psy14164 280 EDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 280 ~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
.++.+.-++--+.-.|.-+...+
T Consensus 211 ~~~~~~~VqGL~A~LLGicyef~ 233 (312)
T PF04869_consen 211 SSSEDVLVQGLCAFLLGICYEFS 233 (312)
T ss_dssp -TCCCHHHHHHHHHHHHHHHHT-
T ss_pred CCCCcchHHHHHHHHHHHHHHhc
Confidence 44445566666666666665543
No 129
>KOG1059|consensus
Probab=95.74 E-value=2 Score=45.56 Aligned_cols=34 Identities=26% Similarity=0.451 Sum_probs=30.4
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHH
Q psy14164 142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFS 175 (361)
Q Consensus 142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~ 175 (361)
.+|.|+.=|..+++.|+.+|..+|+.+|..||+.
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 5888999999999999999999999999988854
No 130
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=95.71 E-value=0.22 Score=42.63 Aligned_cols=73 Identities=18% Similarity=0.235 Sum_probs=63.0
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcC
Q psy14164 142 GLPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRE 214 (361)
Q Consensus 142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn-n~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~ 214 (361)
++..|.+-|.++++.++..|+.+|..+++| .+.....+.+.+.+..|++++....+..|+.+++..|-+-...
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 466777788899999999999999999999 4668888889999999999998667789999999888876543
No 131
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.71 E-value=1 Score=42.34 Aligned_cols=187 Identities=13% Similarity=0.172 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHhhcCcccHH-HH-HHCCCHHHHHHh-------hcCCC--HHHHHHHHHHHH--HHhhcCHHHHHHHH
Q psy14164 114 KDICIGALDNLSDYICSIDYAN-DF-LKMGGLPVLQPL-------LEGSD--PELRWRAAETVA--DIVQNNPFSQNFII 180 (361)
Q Consensus 114 ~~~~~~Al~~L~~lve~idna~-~~-~~~Gg~~~Lv~L-------L~s~~--~~vr~~Aa~~Lg--~iaqnn~~~q~~v~ 180 (361)
.+.++.|+.+|..--+..++-. -+ +.-|.+..|++= |..+. +..-.+.|.+|+ .++..+|+.+..|+
T Consensus 9 ~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~Fl 88 (262)
T PF04078_consen 9 PETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPFL 88 (262)
T ss_dssp HHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHHH
T ss_pred cchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 4678888888877766654332 22 244556666542 22221 212222333332 23445899999999
Q ss_pred hcChHHHHHHhhccC----CCHHHHHHHHHHHHHHhcCChh-hHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhc
Q psy14164 181 QTDFLNLLLTSIEHD----SNTTVQVKSLYAVSCLVRENEE-CLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT 255 (361)
Q Consensus 181 ~~g~l~~Ll~LL~~~----~~~~v~~~Al~ALS~l~r~~~~-~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~ 255 (361)
++...-.|...|+.. +-+.+|-.++..|++++..... .+.-+.....+|...+.|..++.-.|.-|.|.+..+..
T Consensus 89 ~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~ 168 (262)
T PF04078_consen 89 KAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILL 168 (262)
T ss_dssp HTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred HcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHc
Confidence 998766666666532 2357999999999999986544 44445567789999999999999999999999999987
Q ss_pred CCchH------HHHHH-hCCcHHHHHHhc-cCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164 256 DNNQV------KQVLL-SMGMVEQMCVLI-DIEDALDTEMNEHLLSALASLIKDSP 303 (361)
Q Consensus 256 ~~~~~------~~~l~-~~g~i~~Lv~lL-~~~~~~d~~~~e~al~aL~~L~~~~~ 303 (361)
.+.-. .+.+. =..++..++.-| ..+ ++.+..++.++-..|..+..
T Consensus 169 dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~p---S~RLLKhIIrCYlRLsdnpr 221 (262)
T PF04078_consen 169 DDVGLNYICQTAERFFAVAMVLNKMVEQLVKQP---SPRLLKHIIRCYLRLSDNPR 221 (262)
T ss_dssp SHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHTTSTT
T ss_pred chhHHHHHhcCHHHHHHHHHHHHHHHHHHccCC---ChhHHHHHHHHHHHHccCHH
Confidence 54311 11111 123444555444 344 78888999999888887653
No 132
>KOG2734|consensus
Probab=95.68 E-value=2.7 Score=42.26 Aligned_cols=205 Identities=17% Similarity=0.168 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhhcC-cccHHHHHHCCCHHHHHH-hh-cCCCHHHHHHHHHHHHHHhhc
Q psy14164 96 VGAELEKIIKTLKENQDQ-KDICIGALDNLSDYICS-IDYANDFLKMGGLPVLQP-LL-EGSDPELRWRAAETVADIVQN 171 (361)
Q Consensus 96 ~~~~mk~~l~~L~~~~~~-~~~~~~Al~~L~~lve~-idna~~~~~~Gg~~~Lv~-LL-~s~~~~vr~~Aa~~Lg~iaqn 171 (361)
-..++-+.++-|.....+ -.-...++..++.+++- .+.....++.|-+.-|+. +- ..+-...+..|..+++-+-||
T Consensus 177 vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~ 256 (536)
T KOG2734|consen 177 VLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQN 256 (536)
T ss_pred HHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhcc
Confidence 344555555555443222 23455666677777642 233455566665555555 33 246677889999999999999
Q ss_pred CHHHHHHHHhcChHHHHHHhhc----cCC----CHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHH
Q psy14164 172 NPFSQNFIIQTDFLNLLLTSIE----HDS----NTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLV 243 (361)
Q Consensus 172 n~~~q~~v~~~g~l~~Ll~LL~----~~~----~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~ 243 (361)
+...+..+-...++-.|++-+. +++ ....-.+...+|+++++ .+.+...|+...|++...-.++. ....+
T Consensus 257 s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm-~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr 334 (536)
T KOG2734|consen 257 SDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM-APANRERFLKGEGLQLMNLMLRE-KKVSR 334 (536)
T ss_pred CchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc-ChhhhhhhhccccHHHHHHHHHH-HHHhh
Confidence 9998888888899999888764 221 12456778889999988 57789999999999987777765 45556
Q ss_pred HHHHHHHHHHhcCCc--hHHHHHHhCCcHHHHHHhcc-CCC------CCChhHHHHHHHHHHHHHhcC
Q psy14164 244 IKSCFLIACLCTDNN--QVKQVLLSMGMVEQMCVLID-IED------ALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 244 ~kA~~ll~~L~~~~~--~~~~~l~~~g~i~~Lv~lL~-~~~------~~d~~~~e~al~aL~~L~~~~ 302 (361)
..|.-++-++..+++ .....+++.+++..+..+.. .+. ..-.+.-|++...|+++...+
T Consensus 335 ~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 335 GSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 667777888888755 67788888888777666543 220 113456788999998888766
No 133
>KOG1058|consensus
Probab=95.68 E-value=0.28 Score=51.96 Aligned_cols=148 Identities=16% Similarity=0.170 Sum_probs=83.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEF 222 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f 222 (361)
+..+..+|.++++.|+-.|+..|-++. ++|..-.. +...++.|+...++-.++.-.+--|+.+...+....+
T Consensus 245 i~~i~~lL~stssaV~fEaa~tlv~lS-~~p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~-- 316 (948)
T KOG1058|consen 245 IRCIYNLLSSTSSAVIFEAAGTLVTLS-NDPTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQ-- 316 (948)
T ss_pred HHHHHHHHhcCCchhhhhhcceEEEcc-CCHHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHH--
Confidence 444555666666666666666666555 34433222 3344566665545545665556666666543333322
Q ss_pred HhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC-chHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164 223 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN-NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD 301 (361)
Q Consensus 223 ~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~ 301 (361)
|-+--+++.|+++|..+++|+..+.-.|+++. -+..-.+.+..+...--. + .+++-++|.-.+.++..++..
T Consensus 317 ---~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~--e--~d~~~~yRqlLiktih~cav~ 389 (948)
T KOG1058|consen 317 ---GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE--E--SDDNGKYRQLLIKTIHACAVK 389 (948)
T ss_pred ---HHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc--c--cccchHHHHHHHHHHHHHhhc
Confidence 33445678899999999999999999998763 222222222222111110 0 122446777777777777777
Q ss_pred ChHH
Q psy14164 302 SPEA 305 (361)
Q Consensus 302 ~~~~ 305 (361)
.|+.
T Consensus 390 Fp~~ 393 (948)
T KOG1058|consen 390 FPEV 393 (948)
T ss_pred ChHH
Confidence 6653
No 134
>KOG2274|consensus
Probab=95.65 E-value=1.1 Score=48.48 Aligned_cols=151 Identities=13% Similarity=0.132 Sum_probs=108.3
Q ss_pred CHHhHHHHHHHHHhhc-CCH-------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHh
Q psy14164 78 NEANRGFLLDALNSMM-VNV-------GAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPL 149 (361)
Q Consensus 78 s~e~~~~L~eal~~~~-~~~-------~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~L 149 (361)
|+|-.-.|.|+|..+. .|+ .+..-..+.++...+++......+.+-+++++..-+|...+.. -.+|.|+..
T Consensus 543 s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~~iPslisi 621 (1005)
T KOG2274|consen 543 SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-RLIPSLISV 621 (1005)
T ss_pred cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHH
Confidence 4455677888888876 221 2234455566666666767777788888888876566555543 369999999
Q ss_pred hcCCC----HHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhh
Q psy14164 150 LEGSD----PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKR 225 (361)
Q Consensus 150 L~s~~----~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ 225 (361)
|..+. +.+...|+.+|.+++.+.|.-=...+-.-++|++.++.-|..+..+-..+--+|+.++....++....-..
T Consensus 622 l~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e 701 (1005)
T KOG2274|consen 622 LQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDE 701 (1005)
T ss_pred HcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccC
Confidence 98876 88999999999999988554322222244899999987776677888899999999998877776666666
Q ss_pred CcHH
Q psy14164 226 DGFS 229 (361)
Q Consensus 226 ggi~ 229 (361)
+|+.
T Consensus 702 ~g~~ 705 (1005)
T KOG2274|consen 702 PGHN 705 (1005)
T ss_pred CCcc
Confidence 6655
No 135
>KOG1789|consensus
Probab=95.65 E-value=0.26 Score=54.07 Aligned_cols=142 Identities=16% Similarity=0.237 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHh----cChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHH
Q psy14164 156 ELRWRAAETVADIVQNNPFSQNFIIQ----TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVL 231 (361)
Q Consensus 156 ~vr~~Aa~~Lg~iaqnn~~~q~~v~~----~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~L 231 (361)
+=...++.+|.|+.+-||.....|-. -|.++.+..++....+..++.-|+..|+-++. +.+....+...|.+..|
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHH
Confidence 34567999999999999976655433 37888888888876777899999999988776 66788888889988999
Q ss_pred HHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164 232 LRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 232 v~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
..+|+|. +..|..+...++.|++. ++......+.|.+..+..++-..+ +.+.|..+...|..+..+.
T Consensus 1819 L~lLHS~-PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~--~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1819 LTLLHSQ-PSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTN--SDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred HHHHhcC-hHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccC--cHHHHHHHHHHHHHhhhcc
Confidence 9988764 56778899999999774 566677778888888887776542 6788888998888887643
No 136
>KOG2973|consensus
Probab=95.59 E-value=0.49 Score=45.38 Aligned_cols=151 Identities=20% Similarity=0.227 Sum_probs=97.2
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHH-HhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy14164 144 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI-IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEF 222 (361)
Q Consensus 144 ~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v-~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f 222 (361)
.-++.+|.+.++.||..|...+-.++.. ..|... .+.-.++.+.+|+.. .+. ...|+.||-|+... +...+.+
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~-~~~--~~~a~~alVnlsq~-~~l~~~l 79 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKD-LDP--AEPAATALVNLSQK-EELRKKL 79 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccC-ccc--ccHHHHHHHHHHhh-HHHHHHH
Confidence 4578899999999999999888877765 233222 123578889999985 333 56789999999874 3344555
Q ss_pred HhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHh------CCcHHHHHHhccCCCCCChhHHHHHHHHHH
Q psy14164 223 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLS------MGMVEQMCVLIDIEDALDTEMNEHLLSALA 296 (361)
Q Consensus 223 ~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~------~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~ 296 (361)
++. -+..++..+..+...+-.-+|.+++||++.+......+.. .|...........+-+...+ ..+....+.
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~-f~ylA~vf~ 157 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAE-FHYLAPVFA 157 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccc-hhHHHHHHH
Confidence 544 6677777777777888899999999998875544433332 34444444444443111112 244455555
Q ss_pred HHHhcC
Q psy14164 297 SLIKDS 302 (361)
Q Consensus 297 ~L~~~~ 302 (361)
+|.+..
T Consensus 158 nls~~~ 163 (353)
T KOG2973|consen 158 NLSQFE 163 (353)
T ss_pred HHhhhh
Confidence 665543
No 137
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.55 E-value=0.76 Score=44.03 Aligned_cols=110 Identities=18% Similarity=0.187 Sum_probs=83.0
Q ss_pred CCHHHHH-HhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhh-
Q psy14164 141 GGLPVLQ-PLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEEC- 218 (361)
Q Consensus 141 Gg~~~Lv-~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~- 218 (361)
+.+..|+ ..++|+++.||..|.++||-++--+..... ..++.+++.++.+ +..++..|+.+|.-++.-+...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchh
Confidence 3455554 688999999999999999999987764332 2578888888764 7899999999999887755432
Q ss_pred HHHHHh-------hCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC
Q psy14164 219 LKEFIK-------RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD 256 (361)
Q Consensus 219 ~~~f~~-------~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~ 256 (361)
...... ..-+..+...|.+.+..+|.-|+-.++.|.-.
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 111111 23456778888888999999999999988765
No 138
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=95.49 E-value=0.82 Score=44.32 Aligned_cols=150 Identities=17% Similarity=0.189 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhh-------C----cHHHHHHhhc------cCCHHHHHHHHHHHHHHhcCCch
Q psy14164 197 NTTVQVKSLYAVSCLVRENEECLKEFIKR-------D----GFSVLLRCIQ------SKKEKLVIKSCFLIACLCTDNNQ 259 (361)
Q Consensus 197 ~~~v~~~Al~ALS~l~r~~~~~~~~f~~~-------g----gi~~Lv~lL~------s~~~~v~~kA~~ll~~L~~~~~~ 259 (361)
.-.+|..|++++-+.+.+|+..+..|+.. + ....|...|- +.++----.|+.++.+++.++++
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 56899999999999999999999999851 1 1112444444 33444455789999999999888
Q ss_pred HHHHHHhC------------CcHHHHHHhccCC--CCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHH
Q psy14164 260 VKQVLLSM------------GMVEQMCVLIDIE--DALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKE 325 (361)
Q Consensus 260 ~~~~l~~~------------g~i~~Lv~lL~~~--~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~ 325 (361)
.++.+.+- ..++.+..+|-.. .+.+..++.-.|..|..-+-+||.++...-..+-.+..+++. .
T Consensus 131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~-~- 208 (312)
T PF04869_consen 131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEF-S- 208 (312)
T ss_dssp HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHH-H-
T ss_pred HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHH-h-
Confidence 87776542 2466677777652 134778888889999999999999998875554444444443 1
Q ss_pred hhcChhhhHHHHHHHHHHHHHhcC
Q psy14164 326 KHAGNEVYHKELEYVNSVLTEVFE 349 (361)
Q Consensus 326 ~l~~~~e~~~e~~~~~~il~~~f~ 349 (361)
.+..++..-+...|.-+|=.||.
T Consensus 209 -~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 209 -NQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp -S--TCCCHHHHHHHHHHHHHHHH
T ss_pred -hcCCCCcchHHHHHHHHHHHHHH
Confidence 11122333345577777776665
No 139
>KOG0213|consensus
Probab=95.48 E-value=0.36 Score=51.15 Aligned_cols=180 Identities=9% Similarity=0.132 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHhhcCcccHHHHHHC-CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHH---HHH
Q psy14164 114 KDICIGALDNLSDYICSIDYANDFLKM-GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLN---LLL 189 (361)
Q Consensus 114 ~~~~~~Al~~L~~lve~idna~~~~~~-Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~---~Ll 189 (361)
.+..-..|.++..++.-++...-+-.+ |.+|.|...|++.+..|++.+...+|.|+.+.|+. +--...+. -|+
T Consensus 855 pEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~---v~aREWMRIcfeLl 931 (1172)
T KOG0213|consen 855 PEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEY---VSAREWMRICFELL 931 (1172)
T ss_pred HHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCccc---CCHHHHHHHHHHHH
Confidence 355556666776666666555544444 45799999999999999999999999999998862 21122232 366
Q ss_pred HhhccCCCHHHHHHHHHHHHHHhcCChhh---------------HHH---------HHh-hCcH---HHHHHhhccCCHH
Q psy14164 190 TSIEHDSNTTVQVKSLYAVSCLVRENEEC---------------LKE---------FIK-RDGF---SVLLRCIQSKKEK 241 (361)
Q Consensus 190 ~LL~~~~~~~v~~~Al~ALS~l~r~~~~~---------------~~~---------f~~-~ggi---~~Lv~lL~s~~~~ 241 (361)
.+|.. ...++|+.|...+++|++---+. +.. +.+ +|-+ |.|+.=-..+...
T Consensus 932 elLka-hkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~n 1010 (1172)
T KOG0213|consen 932 ELLKA-HKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEAN 1010 (1172)
T ss_pred HHHHH-HHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhH
Confidence 67765 56799999999999998642221 000 111 1212 2222222345666
Q ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164 242 LVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 242 v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
||.-.+-+++.+..- +...++++. -+.+.|-..|... |.-.|..+..++.+++-++
T Consensus 1011 VQnGVLkalsf~FeyigemskdYiy--av~PlleDAlmDr---D~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1011 VQNGVLKALSFMFEYIGEMSKDYIY--AVTPLLEDALMDR---DLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhHHH--HhhHHHHHhhccc---cHHHHHHHHHHHHHHhcCC
Confidence 666655555555432 222233322 2334444444444 6666777777777776554
No 140
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=95.35 E-value=2 Score=41.85 Aligned_cols=158 Identities=17% Similarity=0.212 Sum_probs=117.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhh-cCHHHHHHHHhc-C-hHHHHHHhhccC---CC---------HHHHHHHH-H
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQ-NNPFSQNFIIQT-D-FLNLLLTSIEHD---SN---------TTVQVKSL-Y 206 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaq-nn~~~q~~v~~~-g-~l~~Ll~LL~~~---~~---------~~v~~~Al-~ 206 (361)
+..+.+.|++....+..++++++..++. ++......++.. + -++.|-+++... .. ..+|...+ +
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7788889999999999999999999999 887777777654 2 244455555321 11 16777666 4
Q ss_pred HHHHHhcCChhhHHHHHhhC-cHHHHHHhhccCCHHHHHHHHHHHH-HHhcCC---chHHHHHHhCCcHHHHHHhccCCC
Q psy14164 207 AVSCLVRENEECLKEFIKRD-GFSVLLRCIQSKKEKLVIKSCFLIA-CLCTDN---NQVKQVLLSMGMVEQMCVLIDIED 281 (361)
Q Consensus 207 ALS~l~r~~~~~~~~f~~~g-gi~~Lv~lL~s~~~~v~~kA~~ll~-~L~~~~---~~~~~~l~~~g~i~~Lv~lL~~~~ 281 (361)
.||-+..+++.....++..+ -+..+.+.|..++..+.......+. +++.+. ...+..+....++..|+.+...+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~- 216 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRD- 216 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhccc-
Confidence 55666666777777787655 4678888888888888888888887 455542 35667777888999999988877
Q ss_pred CCCh----hHHHHHHHHHHHHHhcCh
Q psy14164 282 ALDT----EMNEHLLSALASLIKDSP 303 (361)
Q Consensus 282 ~~d~----~~~e~al~aL~~L~~~~~ 303 (361)
+. .+.+.+-..|..++.+..
T Consensus 217 --~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 217 --GEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred --CCcccchHHHHHHHHHHHHhcCCC
Confidence 55 889999999988887553
No 141
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=95.31 E-value=0.36 Score=45.31 Aligned_cols=196 Identities=16% Similarity=0.129 Sum_probs=117.6
Q ss_pred CCCCHHhHHHHHHHHHhhcCC-----HHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCC--HHHH
Q psy14164 75 ASMNEANRGFLLDALNSMMVN-----VGA-ELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGG--LPVL 146 (361)
Q Consensus 75 ~~~s~e~~~~L~eal~~~~~~-----~~~-~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg--~~~L 146 (361)
.++++++...|.+.++.+..+ ... ...-.+..+.. ...+.+..++|-+.-++-+......+...++ ...+
T Consensus 34 ~~l~~~el~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l 111 (268)
T PF08324_consen 34 LKLSEEELESLESLLSALKSTSAYHSDLSAWLILLLKILLS--WPPESRFPALDLLRLAALHPPASDLLASEDSGIADLL 111 (268)
T ss_dssp T-S-HHHHHHHHHHHCCCCCC-SS---HHHHHHHHHHHHCC--S-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHH
T ss_pred cCCCHHHHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHh--CCCccchhHHhHHHHHHhCccHHHHHhccccchHHHH
Confidence 378999999999988887632 122 22333333332 4557799999999999887776666665542 3445
Q ss_pred HHhhc----CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhc-C-hHHHHHHhhccCC---CHHHHHHHHHHHHHHhcCChh
Q psy14164 147 QPLLE----GSDPELRWRAAETVADIVQNNPFSQNFIIQT-D-FLNLLLTSIEHDS---NTTVQVKSLYAVSCLVRENEE 217 (361)
Q Consensus 147 v~LL~----s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~-g-~l~~Ll~LL~~~~---~~~v~~~Al~ALS~l~r~~~~ 217 (361)
..++. +..+..+..++++++|+..+.+. +..+.+. + .+...+..+.... +..+|..++..+-|++.....
T Consensus 112 ~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~ 190 (268)
T PF08324_consen 112 STLISSGSSSSPPANQMLALRLLANLFSHPPG-RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHK 190 (268)
T ss_dssp HHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC-HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc-HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHh
Confidence 55443 25788999999999999976554 4445443 3 3444444444322 568888888888777532111
Q ss_pred hH-HHHHhhCcHHHHHHhhcc--CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHH
Q psy14164 218 CL-KEFIKRDGFSVLLRCIQS--KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQM 273 (361)
Q Consensus 218 ~~-~~f~~~ggi~~Lv~lL~s--~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~L 273 (361)
.. ..=....-+..+++.+.. .+..+.-+++-++.+|+..++.........|+-..+
T Consensus 191 ~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~ 249 (268)
T PF08324_consen 191 NRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVL 249 (268)
T ss_dssp CTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHH
T ss_pred cCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHH
Confidence 00 000001124455553332 589999999999999997776655555545554433
No 142
>KOG1242|consensus
Probab=95.29 E-value=0.82 Score=47.38 Aligned_cols=169 Identities=17% Similarity=0.216 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhh--cCHHHHHHHHhcChHHHHHHhh
Q psy14164 115 DICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQ--NNPFSQNFIIQTDFLNLLLTSI 192 (361)
Q Consensus 115 ~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaq--nn~~~q~~v~~~g~l~~Ll~LL 192 (361)
..|..+++-|..+.+..+..-.++--..+|.+..-|....++||..+-.+|-.++. .||..|. .+|.|+..+
T Consensus 269 rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~------~ip~Lld~l 342 (569)
T KOG1242|consen 269 RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQK------IIPTLLDAL 342 (569)
T ss_pred hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHH------HHHHHHHHh
Confidence 56788888888777766666666666778889999999999999999988877654 4666554 589999999
Q ss_pred ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcH----HHHHHhhccCCHHHHHHHHHHHHHHhcC--CchHHHHHHh
Q psy14164 193 EHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGF----SVLLRCIQSKKEKLVIKSCFLIACLCTD--NNQVKQVLLS 266 (361)
Q Consensus 193 ~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi----~~Lv~lL~s~~~~v~~kA~~ll~~L~~~--~~~~~~~l~~ 266 (361)
.+. .. --.+++..|+.-. +-.+++...+ |.|.+.|...+..++++++-.+.|++.. ++....-++.
T Consensus 343 ~dp-~~-~~~e~~~~L~~tt------FV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~ 414 (569)
T KOG1242|consen 343 ADP-SC-YTPECLDSLGATT------FVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP 414 (569)
T ss_pred cCc-cc-chHHHHHhhccee------eeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH
Confidence 863 21 2234555555421 1223333444 4444555556788889999999999875 3333322221
Q ss_pred CCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164 267 MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD 301 (361)
Q Consensus 267 ~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~ 301 (361)
.+++.|=..+... .+++|+.+.++|..+...
T Consensus 415 -~Llp~lk~~~~d~---~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 415 -SLLPGLKENLDDA---VPEVRAVAARALGALLER 445 (569)
T ss_pred -HHhhHHHHHhcCC---ChhHHHHHHHHHHHHHHH
Confidence 2445555555555 789999999999877753
No 143
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.25 E-value=0.036 Score=34.37 Aligned_cols=30 Identities=13% Similarity=0.294 Sum_probs=26.1
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHhcC
Q psy14164 184 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRE 214 (361)
Q Consensus 184 ~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~ 214 (361)
.+|.+++++++ ++..||..|+++|+.++++
T Consensus 1 llp~l~~~l~D-~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLND-PSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT--SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCC-CCHHHHHHHHHHHHHHHhh
Confidence 47999999995 7889999999999999875
No 144
>KOG0301|consensus
Probab=95.21 E-value=1.4 Score=46.24 Aligned_cols=191 Identities=18% Similarity=0.198 Sum_probs=105.8
Q ss_pred CHHhHHHHHHHHHhhcC---CHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCC----CHHHHHH
Q psy14164 78 NEANRGFLLDALNSMMV---NVGAELE--KIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMG----GLPVLQP 148 (361)
Q Consensus 78 s~e~~~~L~eal~~~~~---~~~~~mk--~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~G----g~~~Lv~ 148 (361)
.|..+..+++.++.... ..-+.++ .+++++.. ...+.+-.||+.|..++.+.-....|+..- -+..++.
T Consensus 519 ~~d~~~~~eeil~li~~s~~~~~e~~~~l~~l~~l~~--wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~ 596 (745)
T KOG0301|consen 519 NPDEINGLEEILSLIKNSSHYSSEVLQSLLALAILLQ--WPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIP 596 (745)
T ss_pred CcchhhhHHHHHHhhcCCCCccchhHHHHHHHHHHhc--CCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhc
Confidence 34555566666555541 1111111 24444433 345778899999999998776666666521 2334444
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhc---cCCCHHHHHHHHHHHHHHhcCChhh-HHHHHh
Q psy14164 149 LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE---HDSNTTVQVKSLYAVSCLVRENEEC-LKEFIK 224 (361)
Q Consensus 149 LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~---~~~~~~v~~~Al~ALS~l~r~~~~~-~~~f~~ 224 (361)
.++ .++..+..++++|.|+..| |..++.+... +..++..+. ..++..++ -|++.++-++... .+.-.+
T Consensus 597 ~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~~~~~~~~s~~~knl~----ia~atlaln~sv~l~~~~~~ 668 (745)
T KOG0301|consen 597 ILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESILDPVIEASSLSNKNLQ----IALATLALNYSVLLIQDNEQ 668 (745)
T ss_pred ccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHhhhhhhhhcccchhHH----HHHHHHHHHHHHHHHhcccc
Confidence 444 5678899999999999976 7777777654 333333332 11222332 2333333221111 111122
Q ss_pred hCcHHHHHHhhcc-----CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccC
Q psy14164 225 RDGFSVLLRCIQS-----KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDI 279 (361)
Q Consensus 225 ~ggi~~Lv~lL~s-----~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~ 279 (361)
.+|.+.|..++.. ++..-.-++.-+|.+|+..++..++.....+ +..+++-++.
T Consensus 669 ~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~-v~sia~~~~~ 727 (745)
T KOG0301|consen 669 LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAKNRS-VDSIAKKLKE 727 (745)
T ss_pred cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHHhcC-HHHHHHHHHH
Confidence 5677776666553 2444556677788898887665555544333 4555555543
No 145
>KOG1240|consensus
Probab=95.17 E-value=0.83 Score=50.83 Aligned_cols=97 Identities=21% Similarity=0.249 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc----CHHHHHHHHhcChHHHHH
Q psy14164 114 KDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQN----NPFSQNFIIQTDFLNLLL 189 (361)
Q Consensus 114 ~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn----n~~~q~~v~~~g~l~~Ll 189 (361)
.+-|+.||+-|..+...++.-..+-. .+|.++.|++.+.+.||..|+.+|..+... ++.....|.++ .+|.|-
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~LDR--VlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY-lfP~L~ 513 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVKLDR--VLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY-LFPHLN 513 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHHHhh--hHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh-hhhhhH
Confidence 37789999888888877765555443 589999999999999999999998887654 23333334443 788888
Q ss_pred HhhccCCCHHHHHHHHHHHHHHhc
Q psy14164 190 TSIEHDSNTTVQVKSLYAVSCLVR 213 (361)
Q Consensus 190 ~LL~~~~~~~v~~~Al~ALS~l~r 213 (361)
.|+.+.....||..-+..|+-++.
T Consensus 514 ~l~~d~~~~~vRiayAsnla~LA~ 537 (1431)
T KOG1240|consen 514 HLLNDSSAQIVRIAYASNLAQLAK 537 (1431)
T ss_pred hhhccCccceehhhHHhhHHHHHH
Confidence 888753444666666666666653
No 146
>KOG2259|consensus
Probab=95.17 E-value=0.1 Score=54.40 Aligned_cols=149 Identities=12% Similarity=0.165 Sum_probs=107.8
Q ss_pred HHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcC
Q psy14164 135 NDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRE 214 (361)
Q Consensus 135 ~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~ 214 (361)
..++..|+.-.+|.=|..+-.+||.+|...++.++++.|..... .+..|+.+|+. ..+.||-+|+++|--|+.+
T Consensus 367 ~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfND-E~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 367 ESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFND-EIEVVRLKAIFALTMISVH 440 (823)
T ss_pred cccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhcc-HHHHHHHHHHHHHHHHHHH
Confidence 45778888899999898888999999999999999999987654 56779999996 5679999999999998875
Q ss_pred ChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHH
Q psy14164 215 NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSA 294 (361)
Q Consensus 215 ~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~a 294 (361)
-.++..-++.+...|...+.++|...--++.+.=-.+.+.... ++..|...|.. -++-+.-.+.+
T Consensus 441 ------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m-----~v~~lL~~L~k----yPqDrd~i~~c 505 (823)
T KOG2259|consen 441 ------LAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDM-----CVAHLLKNLGK----YPQDRDEILRC 505 (823)
T ss_pred ------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHH-----HHHHHHHHhhh----CCCCcHHHHHH
Confidence 2234455678888899889999988777776543222222222 23444444443 23334456777
Q ss_pred HHHHHhcChH
Q psy14164 295 LASLIKDSPE 304 (361)
Q Consensus 295 L~~L~~~~~~ 304 (361)
+..+.++++.
T Consensus 506 m~~iGqnH~~ 515 (823)
T KOG2259|consen 506 MGRIGQNHRR 515 (823)
T ss_pred HHHHhccChh
Confidence 7777777764
No 147
>KOG2956|consensus
Probab=95.14 E-value=3.4 Score=41.86 Aligned_cols=188 Identities=13% Similarity=0.141 Sum_probs=116.7
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCc-ccHH--HHHHCCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhh
Q psy14164 95 NVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSI-DYAN--DFLKMGGLPVLQPLLEG-SDPELRWRAAETVADIVQ 170 (361)
Q Consensus 95 ~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~i-dna~--~~~~~Gg~~~Lv~LL~s-~~~~vr~~Aa~~Lg~iaq 170 (361)
+-..++++.+..+.+. +..+++..|+.+|..+.... -.-+ .|.++ +..++..|.. .+..+|..|+++|+.+++
T Consensus 283 ~~~~~v~~~l~~~~g~-e~a~~~k~alsel~~m~~e~sfsvWeq~f~~i--L~~l~EvL~d~~~~~~k~laLrvL~~ml~ 359 (516)
T KOG2956|consen 283 DQSALVADLLKEISGS-ERASERKEALSELPKMLCEGSFSVWEQHFAEI--LLLLLEVLSDSEDEIIKKLALRVLREMLT 359 (516)
T ss_pred chhHHHHHHHHhccCc-cchhHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHHHHHHccchhhHHHHHHHHHHHHHHH
Confidence 3355666666666664 44578888888777765432 2222 24332 4556666755 888999999999999999
Q ss_pred cCHHHHHHHHhc--ChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHH
Q psy14164 171 NNPFSQNFIIQT--DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCF 248 (361)
Q Consensus 171 nn~~~q~~v~~~--g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ 248 (361)
+.|.- +.+. =++..++..-.. +...+-..|.-+.+.++..+.+-+. +..+..++.+.|...-.-+.-
T Consensus 360 ~Q~~~---l~DstE~ai~K~Leaa~d-s~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~D~~~~~~~iK 428 (516)
T KOG2956|consen 360 NQPAR---LFDSTEIAICKVLEAAKD-SQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTADEPRAVAVIK 428 (516)
T ss_pred hchHh---hhchHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcCcchHHHHHHH
Confidence 87642 2222 244445554443 3445556666666655544433322 223344555566666666666
Q ss_pred HHHHHhcC-CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q psy14164 249 LIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK 300 (361)
Q Consensus 249 ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~ 300 (361)
+++.++.. ..+-.-.++ ..+.|.+++--.+. ...+|..|..+|..+..
T Consensus 429 m~Tkl~e~l~~EeL~~ll-~diaP~~iqay~S~---SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 429 MLTKLFERLSAEELLNLL-PDIAPCVIQAYDST---SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHHHHhhcCHHHHHHhh-hhhhhHHHHHhcCc---hHHhhhhHHHhHHHHHH
Confidence 77777654 212121222 36788889888888 89999999999998885
No 148
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.02 E-value=2.6 Score=43.80 Aligned_cols=187 Identities=11% Similarity=0.110 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHhhcCcccHHHHHHCC-C-HHHHH-Hhhc-CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHH
Q psy14164 114 KDICIGALDNLSDYICSIDYANDFLKMG-G-LPVLQ-PLLE-GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLL 189 (361)
Q Consensus 114 ~~~~~~Al~~L~~lve~idna~~~~~~G-g-~~~Lv-~LL~-s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll 189 (361)
...|..++..+.++++.-+- .+++.+- . +-.++ .-++ .++..+|-.|+.+|.+-. ..+|..+-..+-...++
T Consensus 148 ~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl---~fv~~nf~~E~erNy~m 223 (858)
T COG5215 148 VSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSL---MFVQGNFCYEEERNYFM 223 (858)
T ss_pred hHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHH---HHHHHhhcchhhhchhh
Confidence 46788999999999988765 5555442 2 22333 3343 477899999999998832 23444444444444444
Q ss_pred Hhhc---cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHH---HH
Q psy14164 190 TSIE---HDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVK---QV 263 (361)
Q Consensus 190 ~LL~---~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~---~~ 263 (361)
+... ...+.+++.+|..++..|..-+=.-.+...+.-......+.+++++.+|...|.-+-+.+|.+.-+.. ++
T Consensus 224 qvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~ 303 (858)
T COG5215 224 QVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKY 303 (858)
T ss_pred eeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhh
Confidence 4432 24678999999999998876544444444455556677889999999999999999998886532111 01
Q ss_pred -------------HHhCCcHHHHHHhccCC----CCCChhHHHHHHHHHHHHHhcChH
Q psy14164 264 -------------LLSMGMVEQMCVLIDIE----DALDTEMNEHLLSALASLIKDSPE 304 (361)
Q Consensus 264 -------------l~~~g~i~~Lv~lL~~~----~~~d~~~~e~al~aL~~L~~~~~~ 304 (361)
..-.+++|-|++||... .++|-.+...|..+|...++.+.+
T Consensus 304 ~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd 361 (858)
T COG5215 304 LPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD 361 (858)
T ss_pred cccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh
Confidence 11234788999999873 133455667777777777766543
No 149
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=94.95 E-value=0.42 Score=40.31 Aligned_cols=72 Identities=18% Similarity=0.200 Sum_probs=60.0
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHHHHHHHHhcChHHHHHHhhccCCCHH-HHHHHHHHHHHHhc
Q psy14164 142 GLPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLTSIEHDSNTT-VQVKSLYAVSCLVR 213 (361)
Q Consensus 142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn-n~~~q~~v~~~g~l~~Ll~LL~~~~~~~-v~~~Al~ALS~l~r 213 (361)
++..|-+=|.++++.++..|+.+|..++.| .+.+...+...+.+..|.+++....+.. |+.+++..|.+-..
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 355667778899999999999999999999 5668888889999999999998754434 99999988887654
No 150
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.92 E-value=0.29 Score=43.65 Aligned_cols=144 Identities=19% Similarity=0.220 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHhhc-CHHH----HHHHH------hcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q psy14164 156 ELRWRAAETVADIVQN-NPFS----QNFII------QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIK 224 (361)
Q Consensus 156 ~vr~~Aa~~Lg~iaqn-n~~~----q~~v~------~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~ 224 (361)
.||..|+.+|..+++. +++. -..++ ....-+.|+.++-.|++..+|..|+.+|+.|..|..+-....-+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3799999999999998 4321 11111 22355667777777788999999999999999886543333222
Q ss_pred hC----c---------------HHHHHHhhccC-CHHHHHHHHHHHHHHhcCCchHH--HHHHhCCcHHHHHHhccCCCC
Q psy14164 225 RD----G---------------FSVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQVK--QVLLSMGMVEQMCVLIDIEDA 282 (361)
Q Consensus 225 ~g----g---------------i~~Lv~lL~s~-~~~v~~kA~~ll~~L~~~~~~~~--~~l~~~g~i~~Lv~lL~~~~~ 282 (361)
.. . ...|+.+|+.. +..+....+-+++.|+...|-.+ ..++ ..++..+..++.+.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll-~~~v~~v~~~l~~~-- 157 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLL-TEVVTQVRPLLRHR-- 157 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHH-HHHHHHHHHHHhcC--
Confidence 11 1 13455556554 77788888889999998866332 1111 12345555666776
Q ss_pred CChhHHHHHHHHHHHHHhcCh
Q psy14164 283 LDTEMNEHLLSALASLIKDSP 303 (361)
Q Consensus 283 ~d~~~~e~al~aL~~L~~~~~ 303 (361)
|++++..++.++..++...+
T Consensus 158 -d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 158 -DPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred -CCcHHHHHHHHHHHHHcCCC
Confidence 99999999999999887553
No 151
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.83 E-value=0.28 Score=42.58 Aligned_cols=146 Identities=14% Similarity=0.171 Sum_probs=97.4
Q ss_pred CHHHHHHhhc--CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhH
Q psy14164 142 GLPVLQPLLE--GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECL 219 (361)
Q Consensus 142 g~~~Lv~LL~--s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~ 219 (361)
.+..++..|. ...+++|..|.-++..+- +..++.+.+ -.-..+-.++.. .+..-...++.+++.+--+.+...
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~-~~~d~~i~~~~~l~~lfp~~~dv~ 78 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDE-GEMDSLIIAFSALTALFPGPPDVG 78 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCC-HHCCHHHHHHHHHHHHCTTTHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHcc-ccchhHHHHHHHHHHHhCCCHHHH
Confidence 3556677554 477899999999999884 444444322 123333334443 223467789999999988877766
Q ss_pred HHHHh-hCcHHHHHHhhc--cCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChh-HHHHHHHHH
Q psy14164 220 KEFIK-RDGFSVLLRCIQ--SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTE-MNEHLLSAL 295 (361)
Q Consensus 220 ~~f~~-~ggi~~Lv~lL~--s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~-~~e~al~aL 295 (361)
..++. .|-++.++..+. +.+..++..++-+|+.-|. + +.++.++...+++.|-++++.++ +.. ++..|+-+|
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d-~~~r~~I~~~~~~~L~~~~~~~~--~~~~ir~~A~v~L 154 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-D-KSCRTFISKNYVSWLKELYKNSK--DDSEIRVLAAVGL 154 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-S-HHHHHCCHHHCHHHHHHHTTTCC---HH-CHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-c-HHHHHHHHHHHHHHHHHHHcccc--chHHHHHHHHHHH
Confidence 66654 555677888888 7899999999999997654 3 45555555677889999996541 444 666666555
Q ss_pred H
Q psy14164 296 A 296 (361)
Q Consensus 296 ~ 296 (361)
.
T Consensus 155 ~ 155 (157)
T PF11701_consen 155 C 155 (157)
T ss_dssp H
T ss_pred h
Confidence 3
No 152
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=94.83 E-value=1.6 Score=45.98 Aligned_cols=164 Identities=19% Similarity=0.172 Sum_probs=93.0
Q ss_pred HHHHhhcC----CCHHHHHHHHHHHHHHhhcCHHH---------HHHHHhcChHHHHHHhhc---cCCCHHHHHHHHHHH
Q psy14164 145 VLQPLLEG----SDPELRWRAAETVADIVQNNPFS---------QNFIIQTDFLNLLLTSIE---HDSNTTVQVKSLYAV 208 (361)
Q Consensus 145 ~Lv~LL~s----~~~~vr~~Aa~~Lg~iaqnn~~~---------q~~v~~~g~l~~Ll~LL~---~~~~~~v~~~Al~AL 208 (361)
.+..++.+ .++.++..|+-.+|+++...-.. ....+....++.|...|. +..+...+..++-||
T Consensus 435 ~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL 514 (618)
T PF01347_consen 435 ELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKAL 514 (618)
T ss_dssp HHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHh
Confidence 34445544 45778888998988887531111 111233357777777776 334567888999999
Q ss_pred HHHhcCChhhHHHHHhhCcHHHHHHhhccC---CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCCh
Q psy14164 209 SCLVRENEECLKEFIKRDGFSVLLRCIQSK---KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDT 285 (361)
Q Consensus 209 S~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~---~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~ 285 (361)
+|+ |.+. .++.|...+... +..+|..|++++..+....+... .+.+..++... ..+.
T Consensus 515 gN~--g~~~---------~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~-~e~~ 574 (618)
T PF01347_consen 515 GNL--GHPE---------SIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNT-TEDP 574 (618)
T ss_dssp HHH--T-GG---------GHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-T-TS-H
T ss_pred hcc--CCch---------hhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCC-CCCh
Confidence 998 3343 345555566554 78999999999998877665332 33445555543 2267
Q ss_pred hHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHHhhcChhhhHHHHHHHHHHH
Q psy14164 286 EMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVL 344 (361)
Q Consensus 286 ~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~il 344 (361)
++|..|..+| +...|. ...|+.....+. .|.+.....|+..-|
T Consensus 575 EvRiaA~~~l---m~~~P~------------~~~l~~i~~~l~-~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 575 EVRIAAYLIL---MRCNPS------------PSVLQRIAQSLW-NEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHHHHHHH---HHT---------------HHHHHHHHHHHT-T-S-HHHHHHHHHHH
T ss_pred hHHHHHHHHH---HhcCCC------------HHHHHHHHHHHh-hCchHHHHHHHHHhc
Confidence 8888776555 333343 234555544443 556667777776554
No 153
>KOG2025|consensus
Probab=94.81 E-value=0.56 Score=49.52 Aligned_cols=129 Identities=17% Similarity=0.210 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhcc
Q psy14164 115 DICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH 194 (361)
Q Consensus 115 ~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~ 194 (361)
+..+.-+..+-.-.++.|.-++|+. |-+..|++-..+++..||.+.+.+|+-+..++...-+.+. .+....|+.-+..
T Consensus 60 dRIl~fla~fv~sl~q~d~e~DlV~-~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~D 137 (892)
T KOG2025|consen 60 DRILSFLARFVESLPQLDKEEDLVA-GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKD 137 (892)
T ss_pred HHHHHHHHHHHHhhhccCchhhHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhc
Confidence 4444555556666667788888774 5688888888999999999999999999976665555444 3455555444432
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc-CCHHHHHHHHHHHH
Q psy14164 195 DSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIA 251 (361)
Q Consensus 195 ~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s-~~~~v~~kA~~ll~ 251 (361)
..+.||..|+.|||.+=.. + .-. +......+..+++. ++..||+.|...|.
T Consensus 138 -rep~VRiqAv~aLsrlQ~d-~-~de---e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 138 -REPNVRIQAVLALSRLQGD-P-KDE---ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred -cCchHHHHHHHHHHHHhcC-C-CCC---cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 3568999999999998532 1 101 12344566666665 46788887765443
No 154
>KOG1242|consensus
Probab=94.74 E-value=6.2 Score=41.07 Aligned_cols=196 Identities=15% Similarity=0.100 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHH
Q psy14164 97 GAELEKIIKTLKENQDQKDIC-IGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFS 175 (361)
Q Consensus 97 ~~~mk~~l~~L~~~~~~~~~~-~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~ 175 (361)
...++..+..+..++.+...- ...+-.+.-..+..+ .. -..+-+.++++++...-|.-|++.++.++.|+...
T Consensus 95 ~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~-~~-----~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~ 168 (569)
T KOG1242|consen 95 ISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS-GE-----YVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIE 168 (569)
T ss_pred hHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC-HH-----HHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHh
Confidence 455666666666655443221 222222222222211 01 12566778999999999999999999999887653
Q ss_pred HHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhc
Q psy14164 176 QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT 255 (361)
Q Consensus 176 q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~ 255 (361)
.+.+.+.+..|-+.+....+...|.-+..+.-..+.+-.+.+...+ ..-+|.+.....+...+||..|..++..+.+
T Consensus 169 --~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyi-v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 169 --SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYI-VPILPSILTNFGDKINKVREAAVEAAKAIMR 245 (569)
T ss_pred --hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchH-HhhHHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 3567788888888887533323333244443333332111111111 2345566666667789999999999988877
Q ss_pred CCc-hHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhh
Q psy14164 256 DNN-QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLC 309 (361)
Q Consensus 256 ~~~-~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~ 309 (361)
.-+ ..... +++.++.-+... .-+....++..|..++...|.+++.|
T Consensus 246 ~~~~~aVK~-----llpsll~~l~~~---kWrtK~aslellg~m~~~ap~qLs~~ 292 (569)
T KOG1242|consen 246 CLSAYAVKL-----LLPSLLGSLLEA---KWRTKMASLELLGAMADCAPKQLSLC 292 (569)
T ss_pred hcCcchhhH-----hhhhhHHHHHHH---hhhhHHHHHHHHHHHHHhchHHHHHH
Confidence 532 22221 244444444433 45677889999998888888888766
No 155
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=94.73 E-value=0.51 Score=40.09 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=59.8
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-HHHHHHHHhcChHHHHHHhhccCCCHH---HHHHHHHHHHHHhc
Q psy14164 142 GLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLLTSIEHDSNTT---VQVKSLYAVSCLVR 213 (361)
Q Consensus 142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn-~~~q~~v~~~g~l~~Ll~LL~~~~~~~---v~~~Al~ALS~l~r 213 (361)
++..|.+-|.|+++.++..|+.+|..++.|. +.++..+.....+..|.+++....... |+.+++-.|..-..
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 3666777889999999999999999999997 678888888899999999998654444 89998877776543
No 156
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=94.71 E-value=0.63 Score=39.66 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=60.2
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-HHHHHHHHhcChHHHHHHhhcc-----CCCHHHHHHHHHHHHHHhc
Q psy14164 142 GLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLLTSIEH-----DSNTTVQVKSLYAVSCLVR 213 (361)
Q Consensus 142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn-~~~q~~v~~~g~l~~Ll~LL~~-----~~~~~v~~~Al~ALS~l~r 213 (361)
++..|.+-|+|+++.+...|+.+|-.+++|. +.++..|...+.+.-|++++.. ..+..|+.+.+..|-.-..
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4667778889999999999999999999986 5688888899999999999963 2567899998877766544
No 157
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.63 E-value=0.11 Score=45.83 Aligned_cols=92 Identities=21% Similarity=0.395 Sum_probs=67.8
Q ss_pred HHHHHHHHhh--cCcccHHHHHHCCCHHHHHHhhcC---------CCHHHHHHHHHHHHHHhhcCHHHHHHHHh-cChHH
Q psy14164 119 GALDNLSDYI--CSIDYANDFLKMGGLPVLQPLLEG---------SDPELRWRAAETVADIVQNNPFSQNFIIQ-TDFLN 186 (361)
Q Consensus 119 ~Al~~L~~lv--e~idna~~~~~~Gg~~~Lv~LL~s---------~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~-~g~l~ 186 (361)
..+..|...+ ..+++...|+..||+..|+.+|.. .+..+...+++||-.+. |+......+++ .+++.
T Consensus 83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~-n~~~G~~~v~~~~~~v~ 161 (187)
T PF06371_consen 83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM-NTKYGLEAVLSHPDSVN 161 (187)
T ss_dssp HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT-SSHHHHHHHHCSSSHHH
T ss_pred HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH-ccHHHHHHHHcCcHHHH
Confidence 3344444433 345788899999999999998762 44578899999998888 55555566655 68999
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHh
Q psy14164 187 LLLTSIEHDSNTTVQVKSLYAVSCLV 212 (361)
Q Consensus 187 ~Ll~LL~~~~~~~v~~~Al~ALS~l~ 212 (361)
.|+..|.+ ++..+|.-++..|+.+|
T Consensus 162 ~i~~~L~s-~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 162 LIALSLDS-PNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHT--T-TSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHHH
Confidence 99999986 67899999999999887
No 158
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.63 E-value=0.51 Score=41.30 Aligned_cols=111 Identities=16% Similarity=0.264 Sum_probs=79.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcC--hHHHHHHhhccCCCHHHHHHHHHHHHHHh---cCChh
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD--FLNLLLTSIEHDSNTTVQVKSLYAVSCLV---RENEE 217 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g--~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~---r~~~~ 217 (361)
+..+..+|++.++.-|+.++.+++..++.++. +.+.+.| .+..|+++|+...+..+++.|+.+|+.|. ++.+.
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 56788899999999999999999999988742 3444443 58889999998777788999999988765 56666
Q ss_pred hHHHHHhhCcHHH----HHHhhccCCHHHHHHHHHHHHHHhcCCc
Q psy14164 218 CLKEFIKRDGFSV----LLRCIQSKKEKLVIKSCFLIACLCTDNN 258 (361)
Q Consensus 218 ~~~~f~~~ggi~~----Lv~lL~s~~~~v~~kA~~ll~~L~~~~~ 258 (361)
-..++.... ++. ++.++++ ..+...++.++..+....|
T Consensus 105 l~Rei~tp~-l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 105 LTREIATPN-LPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred hHHHHhhcc-HHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 556665333 333 3333332 5666777777777776554
No 159
>KOG1248|consensus
Probab=94.63 E-value=8.6 Score=43.05 Aligned_cols=167 Identities=17% Similarity=0.143 Sum_probs=107.5
Q ss_pred hHHHHHHHHHhhc----CCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHH-hhcC
Q psy14164 81 NRGFLLDALNSMM----VNVGAELEKIIKTLKENQDQ---KDICIGALDNLSDYICSIDYANDFLKMGGLPVLQP-LLEG 152 (361)
Q Consensus 81 ~~~~L~eal~~~~----~~~~~~mk~~l~~L~~~~~~---~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~-LL~s 152 (361)
++.||+-.....+ .+....+++.+..+....++ ......-|+.+.-++.-.++... . ++-.+.. ..++
T Consensus 590 ~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~v-s---~l~~v~~~~e~~ 665 (1176)
T KOG1248|consen 590 RSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQV-S---KLFTVDPEFENS 665 (1176)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhH-H---HHHHhhHHhhcc
Confidence 6677776663444 35566778777777654422 12334445555555444343321 1 1114444 4466
Q ss_pred CCHHHHHHHHHHHHHHhhcCHHHHHHHHhc--ChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHH
Q psy14164 153 SDPELRWRAAETVADIVQNNPFSQNFIIQT--DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSV 230 (361)
Q Consensus 153 ~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~--g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~ 230 (361)
.+..+|..+-++|..+.+. |.++..+.+. .....|.+-+++ .+...++.++.+|+.|...++.-...|+.....+.
T Consensus 666 ~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs-~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~Ev 743 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQS-SSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEV 743 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 7999999999999999987 6555544332 345555666665 45689999999999999988855556664444444
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHh
Q psy14164 231 LLRCIQSKKEKLVIKSCFLIACLC 254 (361)
Q Consensus 231 Lv~lL~s~~~~v~~kA~~ll~~L~ 254 (361)
|+.. +.-+.+.|+.|.-+|..++
T Consensus 744 IL~~-Ke~n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 744 ILSL-KEVNVKARRNAFALLVFIG 766 (1176)
T ss_pred HHhc-ccccHHHHhhHHHHHHHHH
Confidence 4444 6668899999988888887
No 160
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.48 E-value=3.7 Score=44.74 Aligned_cols=243 Identities=14% Similarity=0.133 Sum_probs=143.8
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhh----cCCC----HHHHHHHHHHHH
Q psy14164 95 NVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLL----EGSD----PELRWRAAETVA 166 (361)
Q Consensus 95 ~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL----~s~~----~~vr~~Aa~~Lg 166 (361)
.-.+.|-..+..+.+....-+.....+.-|.+++.--.|...+.++|+++.|+..| .++. +.+-+.-+.++.
T Consensus 117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE 196 (802)
T PF13764_consen 117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIE 196 (802)
T ss_pred CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHH
Confidence 44656666666666544444445555666666666667899999999999998855 4544 678888888888
Q ss_pred HHhhcCHH----HHHHHHhcC--------hHHHHHHhhccC---CCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHH
Q psy14164 167 DIVQNNPF----SQNFIIQTD--------FLNLLLTSIEHD---SNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVL 231 (361)
Q Consensus 167 ~iaqnn~~----~q~~v~~~g--------~l~~Ll~LL~~~---~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~L 231 (361)
.+.+.-.. ......... -+..|++.+.+. .+..+....+..|..++.|++...+.++++ +...
T Consensus 197 ~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~p~ 274 (802)
T PF13764_consen 197 SLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FKPY 274 (802)
T ss_pred HHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HHHh
Confidence 77653111 111111122 377777777753 356888899999999999999988777642 1222
Q ss_pred HHh--hc---cCCHHHHHHHHHHHHHHhcC------CchHHHHHHhCCcHHHHHHhccCC--C---CCChh--------H
Q psy14164 232 LRC--IQ---SKKEKLVIKSCFLIACLCTD------NNQVKQVLLSMGMVEQMCVLIDIE--D---ALDTE--------M 287 (361)
Q Consensus 232 v~l--L~---s~~~~v~~kA~~ll~~L~~~------~~~~~~~l~~~g~i~~Lv~lL~~~--~---~~d~~--------~ 287 (361)
+++ +. +++.++. +-+++.++.+ +...++.+++.|++...++.|... . -.+++ .
T Consensus 275 l~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps 351 (802)
T PF13764_consen 275 LDFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS 351 (802)
T ss_pred cChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence 221 11 1233333 3333344433 246899999999999888887654 0 01111 2
Q ss_pred HHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHhcC
Q psy14164 288 NEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEVFE 349 (361)
Q Consensus 288 ~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~il~~~f~ 349 (361)
.-.+|..|.-|+.+++.....-. .+.| ..+..|.+-..-..+...|.++|+.+-.
T Consensus 352 Lp~iL~lL~GLa~gh~~tQ~~~~------~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 352 LPYILRLLRGLARGHEPTQLLIA------EQLL-PLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHH------hhHH-HHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 34567777777777653222111 1122 2222222211123567788888877654
No 161
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=94.47 E-value=0.71 Score=38.83 Aligned_cols=73 Identities=14% Similarity=0.148 Sum_probs=61.3
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHH-HHHHHHhcChHHHHHHhhcc--CCCHHHHHHHHHHHHHHhcC
Q psy14164 142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPF-SQNFIIQTDFLNLLLTSIEH--DSNTTVQVKSLYAVSCLVRE 214 (361)
Q Consensus 142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~-~q~~v~~~g~l~~Ll~LL~~--~~~~~v~~~Al~ALS~l~r~ 214 (361)
++..|-+-|+++++.++..|+.+|-.++.|... ++..+.....+..|++++.. ..+..|+.+++..|-+-...
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 466777788999999999999999999999755 77778887888889999976 35779999999888876653
No 162
>KOG2999|consensus
Probab=94.42 E-value=0.87 Score=46.83 Aligned_cols=158 Identities=13% Similarity=0.218 Sum_probs=120.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCC---CHHHHHHHHHHHHHHhcCChhhH
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS---NTTVQVKSLYAVSCLVRENEECL 219 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~---~~~v~~~Al~ALS~l~r~~~~~~ 219 (361)
...++..+.+++..-+..|..-+..+.. .+.....|+...++..|.+++.++. ...+....+.|.|.+.-+.-..+
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 4556788888888888889999999886 5667778899999999999998753 24677888888888876644333
Q ss_pred HHHHhhCcHHHHHHhh--ccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHH
Q psy14164 220 KEFIKRDGFSVLLRCI--QSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS 297 (361)
Q Consensus 220 ~~f~~~ggi~~Lv~lL--~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~ 297 (361)
..+- ..++....... +.-+..+-..|...+-+++.+++..+..+.+.--+..|+..|... +..++.+|+..+-+
T Consensus 164 ~~~~-~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~---n~~i~~~aial~na 239 (713)
T KOG2999|consen 164 ESVS-NDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS---NQRIQTCAIALLNA 239 (713)
T ss_pred eecc-cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc---chHHHHHHHHHHHH
Confidence 3332 22333333332 233667778888888899888888888888888899999999998 99999999999999
Q ss_pred HHhcChHH
Q psy14164 298 LIKDSPEA 305 (361)
Q Consensus 298 L~~~~~~~ 305 (361)
+...+|..
T Consensus 240 l~~~a~~~ 247 (713)
T KOG2999|consen 240 LFRKAPDD 247 (713)
T ss_pred HHhhCChH
Confidence 99888754
No 163
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.36 E-value=4.6 Score=37.97 Aligned_cols=166 Identities=17% Similarity=0.211 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHhcCCC---CH---HHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCC-----CHHHHHHHHHHH
Q psy14164 97 GAELEKIIKTLKENQD---QK---DICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGS-----DPELRWRAAETV 165 (361)
Q Consensus 97 ~~~mk~~l~~L~~~~~---~~---~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~-----~~~vr~~Aa~~L 165 (361)
+-++++++.+...-+. +. ...-.||.-|..+..+.+....|.+....-.|..+|+.. -.-+|-.++.+|
T Consensus 41 ~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVI 120 (262)
T PF04078_consen 41 AALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVI 120 (262)
T ss_dssp HHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHH
Confidence 4567777766543332 22 445677777888888889999999998777778888653 357999999999
Q ss_pred HHHhhc-CHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhH-------HHHHh-hCcHHHHHH-hh
Q psy14164 166 ADIVQN-NPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECL-------KEFIK-RDGFSVLLR-CI 235 (361)
Q Consensus 166 g~iaqn-n~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~-------~~f~~-~ggi~~Lv~-lL 235 (361)
|.+++. ++++-..+++.+.+|..++.++.+ ++--|.-|.+-+..|.-+ +.+. +.|.. ...+..++. +.
T Consensus 121 gaLvK~d~~evi~fLl~tEiiplcLr~me~G-selSKtvAtfIlqKIL~d-d~GL~yiC~t~eRf~av~~vL~~mV~~l~ 198 (262)
T PF04078_consen 121 GALVKTDDPEVISFLLQTEIIPLCLRIMEFG-SELSKTVATFILQKILLD-DVGLNYICQTAERFFAVAMVLNKMVEQLV 198 (262)
T ss_dssp HHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--HHHHHHHHHHHHHHHHS-HHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-cHHHHHHHHHHHHHHHcc-hhHHHHHhcCHHHHHHHHHHHHHHHHHHc
Confidence 999984 667888889999999999999974 667888899999888753 2222 22322 123444443 33
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCchHHHHHH
Q psy14164 236 QSKKEKLVIKSCFLIACLCTDNNQVKQVLL 265 (361)
Q Consensus 236 ~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~ 265 (361)
..++.++-+.+..+-..|+. ++..+..+.
T Consensus 199 ~~pS~RLLKhIIrCYlRLsd-nprar~aL~ 227 (262)
T PF04078_consen 199 KQPSPRLLKHIIRCYLRLSD-NPRAREALR 227 (262)
T ss_dssp HS--HHHHHHHHHHHHHHTT-STTHHHHHH
T ss_pred cCCChhHHHHHHHHHHHHcc-CHHHHHHHH
Confidence 45678888888887777755 455665554
No 164
>KOG1967|consensus
Probab=94.24 E-value=0.64 Score=50.32 Aligned_cols=163 Identities=13% Similarity=0.108 Sum_probs=106.7
Q ss_pred HHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--hCcHHHHHHhhccCCHHHHHHHHHHHHH
Q psy14164 175 SQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIK--RDGFSVLLRCIQSKKEKLVIKSCFLIAC 252 (361)
Q Consensus 175 ~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~--~ggi~~Lv~lL~s~~~~v~~kA~~ll~~ 252 (361)
.+|.+. ...+|.|++.+.. .+..+|-.-+-+||.++.+-|.. .+.. ...+|.|+++|+-+|..+|..+..+|.-
T Consensus 860 ykQRfF-~~ivP~l~~~~~t-~~~~~K~~yl~~LshVl~~vP~~--vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~ 935 (1030)
T KOG1967|consen 860 YKQRFF-CDIVPILVSKFET-APGSQKHNYLEALSHVLTNVPKQ--VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPM 935 (1030)
T ss_pred HHHHHH-HhhHHHHHHHhcc-CCccchhHHHHHHHHHHhcCCHH--hhccchhhHHHHHHHhcCCCccchhhhHhhhhhH
Confidence 334433 3589999999985 45588999999999999866652 2221 3578899999999999999999999998
Q ss_pred HhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHHhhcChhh
Q psy14164 253 LCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEV 332 (361)
Q Consensus 253 L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e 332 (361)
++...+.....-+ .-+++.++.+=++.++...-+|+.|+.+|..|...-|...- .+.- .+.|+-.+.-+..+
T Consensus 936 ~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l---~~fr--~~Vl~al~k~LdDk-- 1007 (1030)
T KOG1967|consen 936 LLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSL---LSFR--PLVLRALIKILDDK-- 1007 (1030)
T ss_pred HHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccc---cccc--HHHHHHhhhccCcH--
Confidence 8877554443322 24577777664443111156899999999999986654321 1111 23455445455432
Q ss_pred hHHHHHHHHHHHHHhcC
Q psy14164 333 YHKELEYVNSVLTEVFE 349 (361)
Q Consensus 333 ~~~e~~~~~~il~~~f~ 349 (361)
-.-+++.|.+.-+.||.
T Consensus 1008 KRlVR~eAv~tR~~W~~ 1024 (1030)
T KOG1967|consen 1008 KRLVRKEAVDTRQNWYM 1024 (1030)
T ss_pred HHHHHHHHHHHhhhhhh
Confidence 12345566666666664
No 165
>KOG2611|consensus
Probab=94.21 E-value=3.1 Score=42.31 Aligned_cols=196 Identities=14% Similarity=0.148 Sum_probs=123.4
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhcCH---HHHHHHHhcChHHHHHHhhccC------CCHHHHHHHHHHHHHHhcCCh
Q psy14164 146 LQPLLEGSDPELRWRAAETVADIVQNNP---FSQNFIIQTDFLNLLLTSIEHD------SNTTVQVKSLYAVSCLVRENE 216 (361)
Q Consensus 146 Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~---~~q~~v~~~g~l~~Ll~LL~~~------~~~~v~~~Al~ALS~l~r~~~ 216 (361)
+..|+...+.+=|-.|+..+...+.|.+ ..+..+.++=+++-+=+||.+. ++...+.-++..|.|.|+..+
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 5567777788889999999999998844 4466688887888888888642 344667778889999998644
Q ss_pred hhH-HHHHhhCcHHHHHHhhccC-CHH------HHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHH
Q psy14164 217 ECL-KEFIKRDGFSVLLRCIQSK-KEK------LVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMN 288 (361)
Q Consensus 217 ~~~-~~f~~~ggi~~Lv~lL~s~-~~~------v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~ 288 (361)
-+. ..+ .+.||.|.+.+... ++. +...+-.+++.+++. +.-...++..|.++.+++.-.-+ +-..-
T Consensus 96 lAsh~~~--v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~---~~~~d 169 (698)
T KOG2611|consen 96 LASHEEM--VSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELP---DGSHD 169 (698)
T ss_pred hccCHHH--HHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCC---CCchh
Confidence 332 223 36789999988743 222 556666677776665 56677888899999999876554 22221
Q ss_pred HHHHHHHHHHHh-cChHHHHhhccCcchHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHhcCCCC
Q psy14164 289 EHLLSALASLIK-DSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEVFEEDS 352 (361)
Q Consensus 289 e~al~aL~~L~~-~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~il~~~f~~~~ 352 (361)
.++..+.-++. ..-+.+ ....-.|...+....+..+.. ++..-||.|.-+-..+|.+.+
T Consensus 170 -~alal~Vlll~~~~~~cw---~e~~~~flali~~va~df~~~-~~a~KfElc~lL~~vl~~~~~ 229 (698)
T KOG2611|consen 170 -MALALKVLLLLVSKLDCW---SETIERFLALIAAVARDFAVL-HNALKFELCHLLSAVLSSEYS 229 (698)
T ss_pred -HHHHHHHHHHHHHhcccC---cCCHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhCChH
Confidence 22222222222 111111 122224555666555555422 455557777766666776654
No 166
>KOG2025|consensus
Probab=94.13 E-value=4.6 Score=42.98 Aligned_cols=123 Identities=17% Similarity=0.116 Sum_probs=78.5
Q ss_pred HHHHHHHHHhhc--CCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHH
Q psy14164 82 RGFLLDALNSMM--VNVGAELEKIIKTLKENQDQ--KDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPEL 157 (361)
Q Consensus 82 ~~~L~eal~~~~--~~~~~~mk~~l~~L~~~~~~--~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~v 157 (361)
.+|+.....++. .-+.+.+.-.+..+....++ ..++-..|..|.-++..+....+-+-.+....+..=|....+.|
T Consensus 63 l~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~V 142 (892)
T KOG2025|consen 63 LSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNV 142 (892)
T ss_pred HHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchH
Confidence 356666555554 22233455555554443333 46677788888877764332222222233455555556678899
Q ss_pred HHHHHHHHHHHh--hcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHH
Q psy14164 158 RWRAAETVADIV--QNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCL 211 (361)
Q Consensus 158 r~~Aa~~Lg~ia--qnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l 211 (361)
|..|..+|+..- .++++ ..+...+..+++.+++++||+.|+..|+.=
T Consensus 143 RiqAv~aLsrlQ~d~~dee-------~~v~n~l~~liqnDpS~EVRRaaLsnI~vd 191 (892)
T KOG2025|consen 143 RIQAVLALSRLQGDPKDEE-------CPVVNLLKDLIQNDPSDEVRRAALSNISVD 191 (892)
T ss_pred HHHHHHHHHHHhcCCCCCc-------ccHHHHHHHHHhcCCcHHHHHHHHHhhccC
Confidence 999999999874 23333 347788999999999999999988777753
No 167
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.11 E-value=2.6 Score=44.07 Aligned_cols=132 Identities=17% Similarity=0.183 Sum_probs=80.3
Q ss_pred HHHHHHhhcC----CCHHHHHHHHHHHHHHhh----cCHHHHHHHHhcChHHHHHHhhcc---CCCHHHHHHHHHHHHHH
Q psy14164 143 LPVLQPLLEG----SDPELRWRAAETVADIVQ----NNPFSQNFIIQTDFLNLLLTSIEH---DSNTTVQVKSLYAVSCL 211 (361)
Q Consensus 143 ~~~Lv~LL~s----~~~~vr~~Aa~~Lg~iaq----nn~~~q~~v~~~g~l~~Ll~LL~~---~~~~~v~~~Al~ALS~l 211 (361)
+..+..++.+ +++.++..|.-.+|+++. +++.+...+ -...++.|...|.. ..+...+.-++-||+|+
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFV-LEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhh-HHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 4455556655 356788888888888764 233222222 23477777777653 23445667788999987
Q ss_pred hcCChhhHHHHHhhCcHHHHHHhhc---cCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHH
Q psy14164 212 VRENEECLKEFIKRDGFSVLLRCIQ---SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMN 288 (361)
Q Consensus 212 ~r~~~~~~~~f~~~ggi~~Lv~lL~---s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~ 288 (361)
|++..... |...+. ..+..+|..|+|++..++...|... -+.+..++.+. ..++++|
T Consensus 474 --g~~~~i~~---------l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~-~e~~EvR 533 (574)
T smart00638 474 --GHPSSIKV---------LEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNR-AEPPEVR 533 (574)
T ss_pred --CChhHHHH---------HHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCC-CCChHHH
Confidence 34444332 233333 3378999999999998876555422 23344555443 2367888
Q ss_pred HHHHHHH
Q psy14164 289 EHLLSAL 295 (361)
Q Consensus 289 e~al~aL 295 (361)
..|..+|
T Consensus 534 iaA~~~l 540 (574)
T smart00638 534 MAAVLVL 540 (574)
T ss_pred HHHHHHH
Confidence 8776655
No 168
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.11 E-value=0.63 Score=41.88 Aligned_cols=130 Identities=13% Similarity=0.101 Sum_probs=88.3
Q ss_pred hcCCCHHHHHHHHHHHHHHhhcCHHHHHHHH---------------hcChHHHHHHhhccC-----CCHHHHHHHHHHHH
Q psy14164 150 LEGSDPELRWRAAETVADIVQNNPFSQNFII---------------QTDFLNLLLTSIEHD-----SNTTVQVKSLYAVS 209 (361)
Q Consensus 150 L~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~---------------~~g~l~~Ll~LL~~~-----~~~~v~~~Al~ALS 209 (361)
+..+....-..++.+|+|++.....+...+- +...+..|+.++..+ ....---..++.++
T Consensus 4 i~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~ 83 (192)
T PF04063_consen 4 ITDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA 83 (192)
T ss_pred ecCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence 3345555667788999999886655543221 223678888888652 11234457889999
Q ss_pred HHhcCChhhHHHHHhhC--c--HHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHh---CCcHHHHHHhccCCC
Q psy14164 210 CLVRENEECLKEFIKRD--G--FSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLS---MGMVEQMCVLIDIED 281 (361)
Q Consensus 210 ~l~r~~~~~~~~f~~~g--g--i~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~---~g~i~~Lv~lL~~~~ 281 (361)
|+++ .+.+++-|++.. . +..|+..+.+.+.--|.-++.+|.|+|...... ..+.. .++++.|+--|..++
T Consensus 84 NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLaGpE 160 (192)
T PF04063_consen 84 NLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLAGPE 160 (192)
T ss_pred HhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhccCCC
Confidence 9998 677888887643 3 667777777887777777889999999875544 44443 467777777777653
No 169
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=94.02 E-value=0.77 Score=39.34 Aligned_cols=73 Identities=22% Similarity=0.185 Sum_probs=62.1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCH-HHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcC
Q psy14164 142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNP-FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRE 214 (361)
Q Consensus 142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~-~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~ 214 (361)
++..|.+=|.|.++.++..|+.+|..+++|.. .++..|...+.+..|++++....+..|+.+.+..|-.-...
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 46667777889999999999999999999966 47778888899999999998756789999999888876654
No 170
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=93.99 E-value=0.58 Score=48.74 Aligned_cols=154 Identities=14% Similarity=0.201 Sum_probs=91.7
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHH---HHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChh
Q psy14164 141 GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFS---QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEE 217 (361)
Q Consensus 141 Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~---q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~ 217 (361)
|.+|.|...|++.+..|.......+|+|+.+.|+. ++++. .---|+.+|.+ .+.++|+.|...+++|.+---+
T Consensus 688 ~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks-~nKeiRR~A~~tfG~Is~aiGP 763 (975)
T COG5181 688 GILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKS-WNKEIRRNATETFGCISRAIGP 763 (975)
T ss_pred hccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHH-hhHHHHHhhhhhhhhHHhhcCH
Confidence 56899999999999999999999999999998872 22221 12236667775 5789999999999999874322
Q ss_pred h---------------HHHHH---------h-hCcHHHHHHhh---ccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCC
Q psy14164 218 C---------------LKEFI---------K-RDGFSVLLRCI---QSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMG 268 (361)
Q Consensus 218 ~---------------~~~f~---------~-~ggi~~Lv~lL---~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g 268 (361)
+ ++.+. + +|-+..|=-+| ..+...||.-..-+++.+..- +...++++. -
T Consensus 764 qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy--~ 841 (975)
T COG5181 764 QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVY--S 841 (975)
T ss_pred HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHH--H
Confidence 1 11111 1 12122222222 234555665555444444321 222233332 1
Q ss_pred cHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164 269 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP 303 (361)
Q Consensus 269 ~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~ 303 (361)
+.+.|-+.|... |.-.|..+...+.+|+-+|+
T Consensus 842 itPlleDAltDr---D~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 842 ITPLLEDALTDR---DPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred hhHHHHhhhccc---chHHHHHHHHHHHHHhcCCC
Confidence 233344444444 67777777777777776665
No 171
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=93.98 E-value=2.1 Score=41.49 Aligned_cols=79 Identities=27% Similarity=0.352 Sum_probs=63.3
Q ss_pred HHHHHhhC--cHHHHHHhhccCCHH-HHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHH
Q psy14164 219 LKEFIKRD--GFSVLLRCIQSKKEK-LVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL 295 (361)
Q Consensus 219 ~~~f~~~g--gi~~Lv~lL~s~~~~-v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL 295 (361)
.+.|.+.+ .+..|.+.|++.... .-.-||.=|..++...|+.+..+.+.|+=..+++|++++ |++++=.|+.|+
T Consensus 347 ~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~---d~~VkfeAl~a~ 423 (432)
T COG5231 347 LDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHD---DDDVKFEALQAL 423 (432)
T ss_pred HHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCC---CchhhHHHHHHH
Confidence 34444333 456788888876433 445577888888888999999999999999999999999 999999999999
Q ss_pred HHHHh
Q psy14164 296 ASLIK 300 (361)
Q Consensus 296 ~~L~~ 300 (361)
..+..
T Consensus 424 q~~i~ 428 (432)
T COG5231 424 QTCIS 428 (432)
T ss_pred HHHHh
Confidence 88764
No 172
>KOG1240|consensus
Probab=93.95 E-value=3 Score=46.73 Aligned_cols=209 Identities=15% Similarity=0.194 Sum_probs=132.6
Q ss_pred CCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhcCc-----ccHHHHHHCCCHHHHHHhhcC-CCHHHHHHHHHHH
Q psy14164 94 VNVGAELEKIIKTLKENQ--DQKDICIGALDNLSDYICSI-----DYANDFLKMGGLPVLQPLLEG-SDPELRWRAAETV 165 (361)
Q Consensus 94 ~~~~~~mk~~l~~L~~~~--~~~~~~~~Al~~L~~lve~i-----dna~~~~~~Gg~~~Lv~LL~s-~~~~vr~~Aa~~L 165 (361)
.++-..+...+..+.--. ...+++..|+..|.+++-.+ .+++-|.+- .+|.|-.++.. ...-||..-|.+|
T Consensus 454 i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY-lfP~L~~l~~d~~~~~vRiayAsnl 532 (1431)
T KOG1240|consen 454 IDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY-LFPHLNHLLNDSSAQIVRIAYASNL 532 (1431)
T ss_pred cchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh-hhhhhHhhhccCccceehhhHHhhH
Confidence 455555666665543221 22477888888887776433 356667664 57788888876 6778899989998
Q ss_pred HHHhhcCHHHHHH----------------------------HHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCC--
Q psy14164 166 ADIVQNNPFSQNF----------------------------IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVREN-- 215 (361)
Q Consensus 166 g~iaqnn~~~q~~----------------------------v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~-- 215 (361)
+.+|..--..++. .+-.++=.....||. ++++.||+..+-.|.-||.-+
T Consensus 533 a~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLls-d~~~~Vkr~Lle~i~~LC~FFGk 611 (1431)
T KOG1240|consen 533 AQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLS-DSPPIVKRALLESIIPLCVFFGK 611 (1431)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHhhh
Confidence 8876321111100 001112233344555 456788888888888877311
Q ss_pred ----h---------------hhHHHHHh---------------hCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHH
Q psy14164 216 ----E---------------ECLKEFIK---------------RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVK 261 (361)
Q Consensus 216 ----~---------------~~~~~f~~---------------~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~ 261 (361)
. .-+-+|++ .+.+|.|.+.|.+..+-|..+|..+++.|+..+--.+
T Consensus 612 ~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K 691 (1431)
T KOG1240|consen 612 EKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRK 691 (1431)
T ss_pred cccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccch
Confidence 1 11333432 3456788888999999999999999999997653333
Q ss_pred HHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhh
Q psy14164 262 QVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLC 309 (361)
Q Consensus 262 ~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~ 309 (361)
..++ .+++-..-+|-.+ +.=+|..++..|..+...-..+-..|
T Consensus 692 ~~v~--~i~~~v~PlL~hP---N~WIR~~~~~iI~~~~~~ls~advyc 734 (1431)
T KOG1240|consen 692 PAVK--DILQDVLPLLCHP---NLWIRRAVLGIIAAIARQLSAADVYC 734 (1431)
T ss_pred HHHH--HHHHhhhhheeCc---hHHHHHHHHHHHHHHHhhhhhhhheE
Confidence 3333 4566667778888 88999999999888886544333334
No 173
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=93.82 E-value=1.7 Score=43.31 Aligned_cols=121 Identities=16% Similarity=0.225 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhc-cC--CCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHH
Q psy14164 155 PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE-HD--SNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVL 231 (361)
Q Consensus 155 ~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~-~~--~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~L 231 (361)
+.|-..|+.++.++..|.|.+-..+.+.|+.+.+++-+. .+ ++..+....-.+|+.||= |....+.|.+.+.++.+
T Consensus 123 ~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~ 201 (379)
T PF06025_consen 123 PSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKL 201 (379)
T ss_pred hHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHH
Confidence 678889999999999999999999999999999999888 33 455777777788888888 67789999999999999
Q ss_pred HHhhccCCH-H------HHHHHHHHHHHHhcCCchHHHHHHhC--CcHHHHHHh
Q psy14164 232 LRCIQSKKE-K------LVIKSCFLIACLCTDNNQVKQVLLSM--GMVEQMCVL 276 (361)
Q Consensus 232 v~lL~s~~~-~------v~~kA~~ll~~L~~~~~~~~~~l~~~--g~i~~Lv~l 276 (361)
++++.+++. + +-...-..+-.|+++.|..|..+++. .++..++.+
T Consensus 202 f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~l~~~ 255 (379)
T PF06025_consen 202 FEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDRLVEL 255 (379)
T ss_pred HHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence 999987632 2 22222334445666777777666543 234444444
No 174
>KOG2137|consensus
Probab=93.71 E-value=1.5 Score=46.43 Aligned_cols=136 Identities=18% Similarity=0.167 Sum_probs=104.1
Q ss_pred HHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCCh
Q psy14164 137 FLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENE 216 (361)
Q Consensus 137 ~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~ 216 (361)
.++...+|.|...++..+..++..++.++.+++.-=+ -.+++.-++|.|-.+.....+..++..++-|+..++
T Consensus 385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---- 457 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---- 457 (700)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH----
Confidence 3444578888889999999999999999999987544 235667789999998776678899999999999998
Q ss_pred hhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCC
Q psy14164 217 ECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE 280 (361)
Q Consensus 217 ~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~ 280 (361)
..++.+.-..-+..+..+.+..++.+......+...+....+.- ..+.-..+++.++-+...+
T Consensus 458 q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 458 QRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcc
Confidence 23444444456778888888889999998888888877654433 3444567788777776655
No 175
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.61 E-value=0.36 Score=36.44 Aligned_cols=67 Identities=10% Similarity=0.142 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCCchHHHHHHhCCc
Q psy14164 201 QVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGM 269 (361)
Q Consensus 201 ~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~-~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~ 269 (361)
.+.|+||++++.. .+....-+.+.+.++.++++.... ...+|--| |..-.|.....+-.+.+.+.|.
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~-fy~Lglis~T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTC-FYVLGLISSTEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHH-HHHHHHHhCCHHHHHHHHHcCC
Confidence 5789999999987 566666666678999999998765 45555544 4444566667777777777764
No 176
>KOG4151|consensus
Probab=93.54 E-value=0.58 Score=49.83 Aligned_cols=203 Identities=14% Similarity=0.121 Sum_probs=128.2
Q ss_pred HHHCCCHHHHHHhhcCCCHHHHHHHHHHHH-HHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCC
Q psy14164 137 FLKMGGLPVLQPLLEGSDPELRWRAAETVA-DIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVREN 215 (361)
Q Consensus 137 ~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg-~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~ 215 (361)
.++.||+..|+++.......-+..+..+|. .+.= | -+. ...+++++.+.+..+..-.-.-.++-++-|++..+
T Consensus 500 ~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f--~--~~~--~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s 573 (748)
T KOG4151|consen 500 KIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF--P--GER--SYEVVKPLDSALHNDEKGLENFEALEALTNLASIS 573 (748)
T ss_pred cccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC--C--CCc--hhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcc
Confidence 678899999999877666666666666666 2211 1 111 13578888888887654455677899999998888
Q ss_pred hhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhC-CcHHHHHHhccCCCCCChhHHHHHHHH
Q psy14164 216 EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSM-GMVEQMCVLIDIEDALDTEMNEHLLSA 294 (361)
Q Consensus 216 ~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~-g~i~~Lv~lL~~~~~~d~~~~e~al~a 294 (361)
....+.++..-+++.+-..+...+.-+|+-++.++.||..+..-..+.+.+. .-++....++..- +..+...+..+
T Consensus 574 ~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~---~E~~~lA~a~a 650 (748)
T KOG4151|consen 574 ESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA---DEKFELAGAGA 650 (748)
T ss_pred hhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh---hhHHhhhcccc
Confidence 8888888888888888888888899999999999999998654444455552 3345455555544 56666666666
Q ss_pred HHHHHhcChHHHHhhccCcchHHHHHHHHHHhhcC------hh---hhHHHHHHHHHHHHHhcCCCC
Q psy14164 295 LASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAG------NE---VYHKELEYVNSVLTEVFEEDS 352 (361)
Q Consensus 295 L~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~------~~---e~~~e~~~~~~il~~~f~~~~ 352 (361)
+..|+.... .||..-+.+.++.+-....++. |. .....++...+|.+++|..+.
T Consensus 651 ~a~I~sv~~----n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~ 713 (748)
T KOG4151|consen 651 LAAITSVVE----NHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEV 713 (748)
T ss_pred ccchhhcch----hhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchH
Confidence 665554432 2222123333444433333321 11 111245566666666666543
No 177
>KOG1020|consensus
Probab=93.41 E-value=3.4 Score=47.28 Aligned_cols=153 Identities=16% Similarity=0.185 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhcCC---------CCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy14164 97 GAELEKIIKTLKENQ---------DQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVAD 167 (361)
Q Consensus 97 ~~~mk~~l~~L~~~~---------~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~ 167 (361)
-..+|-.+..+...+ .+--+.-.|.....++...-...+.|-. -+..++..|..+...+|..|.+||+.
T Consensus 765 ~n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r~f~~sfD~--yLk~Il~~l~e~~ialRtkAlKclS~ 842 (1692)
T KOG1020|consen 765 ENELKYILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHARSFSQSFDP--YLKLILSVLGENAIALRTKALKCLSM 842 (1692)
T ss_pred HHHHHHHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhhHHHHhhHH--HHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 345666666665442 0011223344444444443333444332 36667788899999999999999999
Q ss_pred HhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHH
Q psy14164 168 IVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSC 247 (361)
Q Consensus 168 iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~ 247 (361)
++.-.|.+-. ...+-..+..-+. ++...||..|+--+|.-+..++....+++ ..+.+-..++...||++|.
T Consensus 843 ive~Dp~vL~---~~dvq~~Vh~R~~-DssasVREAaldLvGrfvl~~~e~~~qyY-----~~i~erIlDtgvsVRKRvI 913 (1692)
T KOG1020|consen 843 IVEADPSVLS---RPDVQEAVHGRLN-DSSASVREAALDLVGRFVLSIPELIFQYY-----DQIIERILDTGVSVRKRVI 913 (1692)
T ss_pred HHhcChHhhc---CHHHHHHHHHhhc-cchhHHHHHHHHHHhhhhhccHHHHHHHH-----HHHHhhcCCCchhHHHHHH
Confidence 9987665321 1112222222333 35679999999999998888887777765 3566667778899999999
Q ss_pred HHHHHHhcCCchH
Q psy14164 248 FLIACLCTDNNQV 260 (361)
Q Consensus 248 ~ll~~L~~~~~~~ 260 (361)
-.+..+|.+.|.+
T Consensus 914 KIlrdic~e~pdf 926 (1692)
T KOG1020|consen 914 KILRDICEETPDF 926 (1692)
T ss_pred HHHHHHHHhCCCh
Confidence 9999999987754
No 178
>KOG3036|consensus
Probab=93.29 E-value=4.4 Score=37.86 Aligned_cols=185 Identities=15% Similarity=0.171 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHhhcC-cccHHHH-HHCCCHHHHHHh-hc----------CCCHHHHHHHHHHHHHHhhcCHHHHHHHHh
Q psy14164 115 DICIGALDNLSDYICS-IDYANDF-LKMGGLPVLQPL-LE----------GSDPELRWRAAETVADIVQNNPFSQNFIIQ 181 (361)
Q Consensus 115 ~~~~~Al~~L~~lve~-idna~~~-~~~Gg~~~Lv~L-L~----------s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~ 181 (361)
+-++.||.+|..--+. .|.|--+ +..|....|++- +. ++...-|..-+-+|=.++..+|+.+..|++
T Consensus 39 p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvASHpdTr~~FL~ 118 (293)
T KOG3036|consen 39 PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVASHPDTRRAFLR 118 (293)
T ss_pred chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhcCcchHHHHHH
Confidence 3455666666555443 2344322 233433333331 11 234455666666666777789999999999
Q ss_pred cChHHHHHHhhc----cCCCHHHHHHHHHHHHHHhcCChhhHHHHH-hhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC
Q psy14164 182 TDFLNLLLTSIE----HDSNTTVQVKSLYAVSCLVRENEECLKEFI-KRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD 256 (361)
Q Consensus 182 ~g~l~~Ll~LL~----~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~-~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~ 256 (361)
+..=-.|-..|. +.+.+..|-.++..|+.++...+.-...|+ ..+.+|..++.+..+++-.|.-|+|.+--+...
T Consensus 119 A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlld 198 (293)
T KOG3036|consen 119 AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLD 198 (293)
T ss_pred ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhc
Confidence 864333334443 335678999999999999997666555554 578899999999999999999999999988775
Q ss_pred CchH------HHHHHh-CCcHHHHHHhc-cCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164 257 NNQV------KQVLLS-MGMVEQMCVLI-DIEDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 257 ~~~~------~~~l~~-~g~i~~Lv~lL-~~~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
+.-. .+.|.. .-++..++.-| +.+ +..+..+++++...|..+.
T Consensus 199 D~GL~YiCqt~eRF~av~~~L~kmv~~l~~~p---s~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 199 DVGLYYICQTAERFSAVALVLGKMVFQLVSMP---SPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred cccHHHHHHhHHHHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHhcCCH
Confidence 4311 122211 12344444333 445 8889999999988887544
No 179
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=93.28 E-value=0.96 Score=39.23 Aligned_cols=102 Identities=18% Similarity=0.219 Sum_probs=78.9
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHH-hcChHHHHHHhhc-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhh
Q psy14164 148 PLLEGSDPELRWRAAETVADIVQNNPFSQNFII-QTDFLNLLLTSIE-HDSNTTVQVKSLYAVSCLVRENEECLKEFIKR 225 (361)
Q Consensus 148 ~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~-~~g~l~~Ll~LL~-~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ 225 (361)
.++...+.+-...+..+++.+-+.-|..-..++ ..|.++.++.+.. ...+..++..++-+|+.-|-+ .....|+..
T Consensus 50 ~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~ 127 (157)
T PF11701_consen 50 SLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISK 127 (157)
T ss_dssp HHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHH
T ss_pred HHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHH
Confidence 355555555777899999999999998776665 6688999999998 336779999999999988853 445678889
Q ss_pred CcHHHHHHhhc-cCCHH-HHHHHHHHHH
Q psy14164 226 DGFSVLLRCIQ-SKKEK-LVIKSCFLIA 251 (361)
Q Consensus 226 ggi~~Lv~lL~-s~~~~-v~~kA~~ll~ 251 (361)
+|++.|.+.++ +++.. +|..|+-.+.
T Consensus 128 ~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 128 NYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 99999999995 55666 8888877664
No 180
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=93.22 E-value=9.8 Score=37.91 Aligned_cols=160 Identities=14% Similarity=0.164 Sum_probs=110.4
Q ss_pred HHHHHHHhhcCccc-HHHHHHCCCHHHHHHhhcCCC----------------------------------HHHHHHHHHH
Q psy14164 120 ALDNLSDYICSIDY-ANDFLKMGGLPVLQPLLEGSD----------------------------------PELRWRAAET 164 (361)
Q Consensus 120 Al~~L~~lve~idn-a~~~~~~Gg~~~Lv~LL~s~~----------------------------------~~vr~~Aa~~ 164 (361)
|+..|.-++....+ ...|..+||+..++..|..+- ..+...-++.
T Consensus 4 av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk~ 83 (379)
T PF06025_consen 4 AVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLKF 83 (379)
T ss_pred HHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHHH
Confidence 44445555544423 456788888888877664210 1233344566
Q ss_pred HHHHhh---cCHHHHHHHHh-cChHHHHHHhhccCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhc-c
Q psy14164 165 VADIVQ---NNPFSQNFIIQ-TDFLNLLLTSIEHDS--NTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQ-S 237 (361)
Q Consensus 165 Lg~iaq---nn~~~q~~v~~-~g~l~~Ll~LL~~~~--~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~-s 237 (361)
|..+.+ ++...-..+++ ...+..|-..+.+.. ...+-..|+..++.++.+.|..+..+.++|.++.+++.+. .
T Consensus 84 l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~ 163 (379)
T PF06025_consen 84 LSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAK 163 (379)
T ss_pred HHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhcc
Confidence 666766 33333334555 334444555666532 2478889999999999988888888888999999998887 4
Q ss_pred ---CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCC
Q psy14164 238 ---KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE 280 (361)
Q Consensus 238 ---~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~ 280 (361)
++.++-.-.-.++..||-+ ....+.+.+.+.++.+.+++.++
T Consensus 164 ~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 164 GILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred CCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHHHHHHhCCH
Confidence 3677878788888888874 56788889999999999998876
No 181
>KOG1824|consensus
Probab=93.16 E-value=2.2 Score=46.65 Aligned_cols=154 Identities=10% Similarity=0.113 Sum_probs=98.5
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy14164 142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKE 221 (361)
Q Consensus 142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~ 221 (361)
.+..|+++|...+.+|+-.|.+|||-++..-++-|- +. .+..|..-+-++ .+..|--+.-+|=.++.+-+|....
T Consensus 48 vv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~l---e~-~ve~L~~~~~s~-keq~rdissi~Lktvi~nl~P~~~~ 122 (1233)
T KOG1824|consen 48 VVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQL---ET-IVENLCSNMLSG-KEQLRDISSIGLKTVIANLPPSSSS 122 (1233)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHH---HH-HHHHHhhhhccc-hhhhccHHHHHHHHHHhcCCCcccc
Confidence 477889999999999999999999999954443332 21 233333322222 2233333333333444445555566
Q ss_pred HHhhCcHHHHHHhhcc------CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHH
Q psy14164 222 FIKRDGFSVLLRCIQS------KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL 295 (361)
Q Consensus 222 f~~~ggi~~Lv~lL~s------~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL 295 (361)
|+....++.+..-|.. +...++-.++-.+..+.+..-...-. ...+.+..++.-|.++ ..-+|.++..+|
T Consensus 123 ~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~---R~aVrKkai~~l 198 (1233)
T KOG1824|consen 123 FLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSP---RLAVRKKAITAL 198 (1233)
T ss_pred ccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccCh---HHHHHHHHHHHH
Confidence 6666666655555543 35569999999888887653322222 2235566677777777 788999999999
Q ss_pred HHHHhcChH
Q psy14164 296 ASLIKDSPE 304 (361)
Q Consensus 296 ~~L~~~~~~ 304 (361)
..++..++.
T Consensus 199 ~~la~~~~~ 207 (1233)
T KOG1824|consen 199 GHLASSCNR 207 (1233)
T ss_pred HHHHHhcCH
Confidence 999987753
No 182
>KOG0212|consensus
Probab=92.95 E-value=2.8 Score=43.31 Aligned_cols=141 Identities=14% Similarity=0.197 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCH-HHHHHHHHHHHHHhhc--CHHHHHHHHhcC-hHHHHHH
Q psy14164 115 DICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDP-ELRWRAAETVADIVQN--NPFSQNFIIQTD-FLNLLLT 190 (361)
Q Consensus 115 ~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~-~vr~~Aa~~Lg~iaqn--n~~~q~~v~~~g-~l~~Ll~ 190 (361)
+-+..|+-=+.++|.-....--..-.|.+..++.|+.+.++ .++..|..+-+.+..- .+.-.+. ++.| .+..|.+
T Consensus 265 ~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~ 343 (675)
T KOG0212|consen 265 EIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTK 343 (675)
T ss_pred HHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHH
Confidence 45666777777777554444444455667888888877666 5777776665443321 1111111 3333 5777888
Q ss_pred hhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc
Q psy14164 191 SIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN 258 (361)
Q Consensus 191 LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~ 258 (361)
.+.+ .....|..++.-|.-+-+..|.. -.+.....++.|...|++++..|..++.++++++|.+..
T Consensus 344 ~l~~-~~~~tri~~L~Wi~~l~~~~p~q-l~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 344 YLSD-DREETRIAVLNWIILLYHKAPGQ-LLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred Hhhc-chHHHHHHHHHHHHHHHhhCcch-hhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 8886 46799999999999988766543 333346688999999999999999999999999998743
No 183
>KOG2274|consensus
Probab=92.84 E-value=16 Score=39.94 Aligned_cols=148 Identities=11% Similarity=0.145 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhhcCcccHHHHH-HCCCHHHHHHh-h-cCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHh
Q psy14164 115 DICIGALDNLSDYICSIDYANDFL-KMGGLPVLQPL-L-EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 191 (361)
Q Consensus 115 ~~~~~Al~~L~~lve~idna~~~~-~~Gg~~~Lv~L-L-~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~L 191 (361)
+......+.|...| ..|.+.... +....|.++.+ + .+++|-|-..+-.++-.+.| +..|+.-.. .-.+|.|++.
T Consensus 545 evl~llmE~Ls~vv-~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q-~~~~~g~m~-e~~iPslisi 621 (1005)
T KOG2274|consen 545 EVLVLLMEALSSVV-KLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ-IAANYGPMQ-ERLIPSLISV 621 (1005)
T ss_pred HHHHHHHHHHHHHh-ccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH-HHHhhcchH-HHHHHHHHHH
Confidence 33333344444443 445443332 23345666664 3 46788888888888888887 333443332 3479999999
Q ss_pred hccCC---CHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHh-hccCCHHHHHHHHHHHHHHhcCCchHHHHHH
Q psy14164 192 IEHDS---NTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRC-IQSKKEKLVIKSCFLIACLCTDNNQVKQVLL 265 (361)
Q Consensus 192 L~~~~---~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~l-L~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~ 265 (361)
+.... ......-|+--|++++|+.|+-...-+-.-.+|++.++ |+++|..+-+.+.-+++++...+.++...-.
T Consensus 622 l~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~ 699 (1005)
T KOG2274|consen 622 LQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWH 699 (1005)
T ss_pred HcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhc
Confidence 97532 24677889999999999977655444445678888887 6778999999999999999987665544443
No 184
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=92.77 E-value=14 Score=38.58 Aligned_cols=191 Identities=10% Similarity=0.145 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHH--HHH--CC-------CH-HHHHHhhcCCCHHHHHHHHHH
Q psy14164 97 GAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYAND--FLK--MG-------GL-PVLQPLLEGSDPELRWRAAET 164 (361)
Q Consensus 97 ~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~--~~~--~G-------g~-~~Lv~LL~s~~~~vr~~Aa~~ 164 (361)
.+-|.-..++|.+....++-+..|--.|..-+..-|.... +.. .| -+ ...++-|.++.+..-..|+.+
T Consensus 38 ~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql 117 (858)
T COG5215 38 EQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQL 117 (858)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 3445555666776555566666665566554443333221 100 01 01 112456778888888888888
Q ss_pred HHHHhhcCHHHHHHHHhc----ChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhC-c-HHHHHHhhcc-
Q psy14164 165 VADIVQNNPFSQNFIIQT----DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRD-G-FSVLLRCIQS- 237 (361)
Q Consensus 165 Lg~iaqnn~~~q~~v~~~----g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~g-g-i~~Lv~lL~s- 237 (361)
|+.|+.-. +-. |.+..++...-.+....++..++.+++++|-.-.| ...+...| . +......++.
T Consensus 118 ~aaIA~~E-------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~ga~k~e 189 (858)
T COG5215 118 LAAIARME-------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMGALKNE 189 (858)
T ss_pred HHHHHHhh-------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHhhcccC
Confidence 88887421 222 44555555555556679999999999999987555 22222223 2 3344455554
Q ss_pred CCHHHHHHHHHHHHH-HhcCCchHHHHHH---hCC-cHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164 238 KKEKLVIKSCFLIAC-LCTDNNQVKQVLL---SMG-MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 238 ~~~~v~~kA~~ll~~-L~~~~~~~~~~l~---~~g-~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
++..+|-.|..++.+ |.. .+..+- +.+ +....|+.-..+ |.+++..+..+|..|..-.
T Consensus 190 t~~avRLaaL~aL~dsl~f----v~~nf~~E~erNy~mqvvceatq~~---d~e~q~aafgCl~kim~Ly 252 (858)
T COG5215 190 TTSAVRLAALKALMDSLMF----VQGNFCYEEERNYFMQVVCEATQGN---DEELQHAAFGCLNKIMMLY 252 (858)
T ss_pred chHHHHHHHHHHHHHHHHH----HHHhhcchhhhchhheeeehhccCC---cHHHHHHHHHHHHHHHHHH
Confidence 478999999888887 321 111111 111 233455555556 7888888888887777544
No 185
>KOG1061|consensus
Probab=92.67 E-value=1.2 Score=47.23 Aligned_cols=163 Identities=10% Similarity=0.088 Sum_probs=108.3
Q ss_pred HHhHHHHHHHHHhhc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHH
Q psy14164 79 EANRGFLLDALNSMM--VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPE 156 (361)
Q Consensus 79 ~e~~~~L~eal~~~~--~~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~ 156 (361)
..++.-++++++.+. .|-..+.-+.+..... .+.+.|.-.-.- +-+....+-....+.+..+++=..++++.
T Consensus 28 ~kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T--~dlelKKlvyLY----l~nYa~~~P~~a~~avnt~~kD~~d~np~ 101 (734)
T KOG1061|consen 28 EKRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQT--RDLELKKLVYLY----LMNYAKGKPDLAILAVNTFLKDCEDPNPL 101 (734)
T ss_pred hhHHHHHHHHHhcCccCcchHhhhHHHHhhccc--CCchHHHHHHHH----HHHhhccCchHHHhhhhhhhccCCCCCHH
Confidence 556777778888777 3333333333333222 122333222111 22222233334456677777777789999
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhc
Q psy14164 157 LRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQ 236 (361)
Q Consensus 157 vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~ 236 (361)
+|..|.+..|.+-- +..... ...+|.+.+++ .++-+|+.|+..+..+=..+ .+.+.+.|-+..|..++.
T Consensus 102 iR~lAlrtm~~l~v--~~i~ey-----~~~Pl~~~l~d-~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~ 170 (734)
T KOG1061|consen 102 IRALALRTMGCLRV--DKITEY-----LCDPLLKCLKD-DDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLS 170 (734)
T ss_pred HHHHHhhceeeEee--hHHHHH-----HHHHHHHhccC-CChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhc
Confidence 99999999887643 333333 56788999986 56789999998888885433 356777888899999999
Q ss_pred cCCHHHHHHHHHHHHHHhcCCc
Q psy14164 237 SKKEKLVIKSCFLIACLCTDNN 258 (361)
Q Consensus 237 s~~~~v~~kA~~ll~~L~~~~~ 258 (361)
+.++.|...|+.+++.+...++
T Consensus 171 D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 171 DSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred CCCchHHHHHHHHHHHHHHhCC
Confidence 8899999999999999987665
No 186
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=92.50 E-value=11 Score=36.82 Aligned_cols=148 Identities=12% Similarity=0.186 Sum_probs=106.2
Q ss_pred HHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcC---hHHHHHHhhcc
Q psy14164 118 IGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD---FLNLLLTSIEH 194 (361)
Q Consensus 118 ~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g---~l~~Ll~LL~~ 194 (361)
..+-..|.+++..-..+.-+.....+..+..+.+.++=+|-.-|..++-.+-+.++..-..++..+ .+...-+||.+
T Consensus 141 l~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s 220 (335)
T PF08569_consen 141 LNCGDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLES 220 (335)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-
T ss_pred chHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 344444555554444455555556667777888889999999999999999999998877777664 56778888887
Q ss_pred CCCHHHHHHHHHHHHHHhcC--ChhhHHHHHh-hCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC---chHHHHHHh
Q psy14164 195 DSNTTVQVKSLYAVSCLVRE--NEECLKEFIK-RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN---NQVKQVLLS 266 (361)
Q Consensus 195 ~~~~~v~~~Al~ALS~l~r~--~~~~~~~f~~-~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~---~~~~~~l~~ 266 (361)
++-.+|+.++--|+-+.-+ |-.....++. ..-+..++.+|++++..+|.+|-.++--++.+. +.....+..
T Consensus 221 -~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~ 297 (335)
T PF08569_consen 221 -SNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIK 297 (335)
T ss_dssp -SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHH
T ss_pred -CCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHH
Confidence 5789999999999998854 3344455554 346889999999999999999999998887762 344444443
No 187
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=92.41 E-value=1.5 Score=45.51 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHh
Q psy14164 198 TTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLC 254 (361)
Q Consensus 198 ~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~ 254 (361)
.-||..|+.|||-..-+-. ..|........|.+||.+.|..||-+|.|++.++=
T Consensus 501 ~ivRsaAv~aLskf~ln~~---d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 501 NIVRSAAVQALSKFALNIS---DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred hHHHHHHHHHHHHhccCcc---ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 3688899999987654321 12222334567899999999999999999999985
No 188
>KOG1820|consensus
Probab=92.32 E-value=3.3 Score=45.18 Aligned_cols=170 Identities=15% Similarity=0.134 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHhhcCcccHHHHHHCC---CHHHHHHh-hcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHH
Q psy14164 115 DICIGALDNLSDYICSIDYANDFLKMG---GLPVLQPL-LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLT 190 (361)
Q Consensus 115 ~~~~~Al~~L~~lve~idna~~~~~~G---g~~~Lv~L-L~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~ 190 (361)
.++..|++.+...+++-- --...| -+-.++.. +...+..|...|+.+|.-++......-.. +..+++|.|+.
T Consensus 268 K~R~Eale~l~~~l~e~~---~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~-~~~~v~p~lld 343 (815)
T KOG1820|consen 268 KDRKEALEELVAILEEAK---KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK-YAKNVFPSLLD 343 (815)
T ss_pred HHHHHHHHHHHHHHhccc---cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH-HHHhhcchHHH
Confidence 678888888888776533 111122 23344443 34578899999999999999876654222 22468898988
Q ss_pred hhccCCCHHHH---HHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHh
Q psy14164 191 SIEHDSNTTVQ---VKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLS 266 (361)
Q Consensus 191 LL~~~~~~~v~---~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~ 266 (361)
-+.. ....++ ++++-++++. ++. ..-.+.+..++.+++++++.....++...+.. ++.....-.-
T Consensus 344 ~lke-kk~~l~d~l~~~~d~~~ns---~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~ 412 (815)
T KOG1820|consen 344 RLKE-KKSELRDALLKALDAILNS---TPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETV 412 (815)
T ss_pred Hhhh-ccHHHHHHHHHHHHHHHhc---ccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhH
Confidence 8875 333333 4555555552 111 12345678889999999999976666666554 3333333333
Q ss_pred CCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164 267 MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 267 ~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
.++++.++...... +.++|..++.++..+....
T Consensus 413 ~~l~p~~~~~~~D~---~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 413 KTLVPHLIKHINDT---DKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred HHHhHHHhhhccCC---cHHHHHHHHHHHHHHHHHh
Confidence 46788888877777 9999999999999888644
No 189
>KOG1832|consensus
Probab=92.31 E-value=0.33 Score=52.30 Aligned_cols=154 Identities=19% Similarity=0.237 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHhhcCc--------ccHHHHHHCCCHHHHHHhhc--------CCCHHHHHHHHHHHHHHhhcCHHHHHH
Q psy14164 115 DICIGALDNLSDYICSI--------DYANDFLKMGGLPVLQPLLE--------GSDPELRWRAAETVADIVQNNPFSQNF 178 (361)
Q Consensus 115 ~~~~~Al~~L~~lve~i--------dna~~~~~~Gg~~~Lv~LL~--------s~~~~vr~~Aa~~Lg~iaqnn~~~q~~ 178 (361)
+.....++.++.+++-. .-|++|.++||+..++.+.. ++..++...|+.+|. |+..-|..|..
T Consensus 567 ~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~-i~t~iP~iq~~ 645 (1516)
T KOG1832|consen 567 EAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLH-IVTSIPDIQKA 645 (1516)
T ss_pred hHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhhee-eeEecchHHHH
Confidence 44555566666555432 45799999999999999875 344677778888876 44567888877
Q ss_pred HHhc--------ChHHHHHHhhcc---CCCHHHHHHHHHHHHHHhcCChhh-----------------------------
Q psy14164 179 IIQT--------DFLNLLLTSIEH---DSNTTVQVKSLYAVSCLVRENEEC----------------------------- 218 (361)
Q Consensus 179 v~~~--------g~l~~Ll~LL~~---~~~~~v~~~Al~ALS~l~r~~~~~----------------------------- 218 (361)
+... .++..++..-.. ..+++++..|+..|-|++..-|..
T Consensus 646 La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le 725 (1516)
T KOG1832|consen 646 LAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLE 725 (1516)
T ss_pred HHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHH
Confidence 7643 355555554321 136789999999988876543221
Q ss_pred ------HHHHHhhCcHHHHHHhhccC-----CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcH
Q psy14164 219 ------LKEFIKRDGFSVLLRCIQSK-----KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV 270 (361)
Q Consensus 219 ------~~~f~~~ggi~~Lv~lL~s~-----~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i 270 (361)
+.++...+||..|+.+|+-. ...+|.-||.++.-|++ ++.+++.+.+.-++
T Consensus 726 ~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR-~~tVrQIltKLpLv 787 (1516)
T KOG1832|consen 726 QVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLAR-DDTVRQILTKLPLV 787 (1516)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccc-CcHHHHHHHhCccc
Confidence 33455678999999999853 46889999999999887 56788877765544
No 190
>KOG4151|consensus
Probab=92.24 E-value=2.9 Score=44.67 Aligned_cols=213 Identities=15% Similarity=0.215 Sum_probs=121.7
Q ss_pred CCCCCCCHHHHHHHHhhcCCCCCCCCCCcccccCCCCHHhHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy14164 42 QPRQPSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGAL 121 (361)
Q Consensus 42 ~~~~~~~l~~LL~w~~~~s~~~~~~~~~~~~~~~~~s~e~~~~L~eal~~~~~~~~~~mk~~l~~L~~~~~~~~~~~~Al 121 (361)
-+-++.+.+.||+.+.+.+.. + .+.| -.||.....=+.++--+.+..+.+....+..-..-+
T Consensus 499 ~~Ik~~~~~aLlrl~~~q~e~-----a------------kl~~-~~aL~~~i~f~~~~~~~v~~~~~s~~~~d~~~~en~ 560 (748)
T KOG4151|consen 499 KKIKPGGYEALLRLGQQQFEE-----A------------KLKW-YHALAGKIDFPGERSYEVVKPLDSALHNDEKGLENF 560 (748)
T ss_pred ccccccHHHHHHHHHHHhchH-----H------------HHHH-HHHHhhhcCCCCCchhhhhhhhcchhhhhHHHHHHH
Confidence 456788999999999988631 1 2344 244442110011122333444444333332222222
Q ss_pred HHHHHhh--cCccc--HHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCC
Q psy14164 122 DNLSDYI--CSIDY--ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSN 197 (361)
Q Consensus 122 ~~L~~lv--e~idn--a~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~ 197 (361)
+.|+.+- .+++. ...+++--+++-+-.++..+++.++..|+..+.|+.-..-..-..+.+...=.++|.+.....+
T Consensus 561 E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~ 640 (748)
T KOG4151|consen 561 EALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVAD 640 (748)
T ss_pred HHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhh
Confidence 2222222 11111 2335555566666667888999999999999999998766666666664433334444332244
Q ss_pred HHHHHHHHHHHH---HHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHH
Q psy14164 198 TTVQVKSLYAVS---CLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMC 274 (361)
Q Consensus 198 ~~v~~~Al~ALS---~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv 274 (361)
+.....++.++. .++.++-+.... ...+...++.++.+.+..+|......+.++.....+....+........+.
T Consensus 641 E~~~lA~a~a~a~I~sv~~n~c~~~~~--~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~ 718 (748)
T KOG4151|consen 641 EKFELAGAGALAAITSVVENHCSRILE--LLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLS 718 (748)
T ss_pred hHHhhhccccccchhhcchhhhhhHHH--hhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHH
Confidence 455555555444 444443332222 347889999999999999999999999986655555555555444444333
No 191
>KOG2611|consensus
Probab=92.18 E-value=9.1 Score=39.12 Aligned_cols=136 Identities=16% Similarity=0.185 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHHHHhhcCcc--cH--HHHHHCCCHHHHHHhhcC-------CCHHHHHHHHHHHHHHhhcCHHHH--HH
Q psy14164 112 DQKDICIGALDNLSDYICSID--YA--NDFLKMGGLPVLQPLLEG-------SDPELRWRAAETVADIVQNNPFSQ--NF 178 (361)
Q Consensus 112 ~~~~~~~~Al~~L~~lve~id--na--~~~~~~Gg~~~Lv~LL~s-------~~~~vr~~Aa~~Lg~iaqnn~~~q--~~ 178 (361)
.+++++..||--.-.+|.+-| .+ +.+...=|++.+=+||.+ ++...+.-+..+|+..|+. |+.. ..
T Consensus 23 k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~-pElAsh~~ 101 (698)
T KOG2611|consen 23 KRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV-PELASHEE 101 (698)
T ss_pred cChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-hhhccCHH
Confidence 445778888877777776554 22 335666689999999975 3456788888888888864 3321 22
Q ss_pred HHhcChHHHHHHhhccCCCHH------HHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc----CCHHHHHHHHH
Q psy14164 179 IIQTDFLNLLLTSIEHDSNTT------VQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS----KKEKLVIKSCF 248 (361)
Q Consensus 179 v~~~g~l~~Ll~LL~~~~~~~------v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s----~~~~v~~kA~~ 248 (361)
++ ..||.|+..++...++. +...+-.+|-.++. .+++....+..||++.+-+.-.. .+..+..+...
T Consensus 102 ~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~-~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vll 178 (698)
T KOG2611|consen 102 MV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVAT-AEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLL 178 (698)
T ss_pred HH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhc-CCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHH
Confidence 33 46899999987543332 44555555555554 58899999999999999865432 24555555544
Q ss_pred HHH
Q psy14164 249 LIA 251 (361)
Q Consensus 249 ll~ 251 (361)
+..
T Consensus 179 l~~ 181 (698)
T KOG2611|consen 179 LLV 181 (698)
T ss_pred HHH
Confidence 433
No 192
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=92.15 E-value=4.7 Score=35.99 Aligned_cols=139 Identities=15% Similarity=0.173 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhhcCcccHH------HHHHCC------CHHHHHH-hhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhc
Q psy14164 116 ICIGALDNLSDYICSIDYAN------DFLKMG------GLPVLQP-LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQT 182 (361)
Q Consensus 116 ~~~~Al~~L~~lve~idna~------~~~~~G------g~~~Lv~-LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~ 182 (361)
.+..|+.-|..++...|-.. .|..-+ .-+.|+. ++..+++.+|..|+.+|+.+-.+....=...-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 35667777777776644321 122222 4455655 5678999999999999999987743221111111
Q ss_pred -------------------ChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHH----HHHHhhccCC
Q psy14164 183 -------------------DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFS----VLLRCIQSKK 239 (361)
Q Consensus 183 -------------------g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~----~Lv~lL~s~~ 239 (361)
..-..|+..|..+.+..+....+-+++.++.+.|...- ..|-++ .+...+.+.|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCC
Confidence 13455677777777778888999999999988776432 234444 4445566789
Q ss_pred HHHHHHHHHHHHHHhcCC
Q psy14164 240 EKLVIKSCFLIACLCTDN 257 (361)
Q Consensus 240 ~~v~~kA~~ll~~L~~~~ 257 (361)
..++.-+..++..|++..
T Consensus 159 ~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CcHHHHHHHHHHHHHcCC
Confidence 999999999999888754
No 193
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=92.15 E-value=3.1 Score=39.31 Aligned_cols=145 Identities=16% Similarity=0.149 Sum_probs=89.0
Q ss_pred HHHCCCHHHHHHhhcCCC----HHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q psy14164 137 FLKMGGLPVLQPLLEGSD----PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV 212 (361)
Q Consensus 137 ~~~~Gg~~~Lv~LL~s~~----~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~ 212 (361)
|.-.+.+|.++.-+..+. ...-..+|..|+.+|.++. ...+..++..+....-.....-.--.++.+.
T Consensus 107 ~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~ 178 (262)
T PF14225_consen 107 FLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLR 178 (262)
T ss_pred HHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 334455677777666666 2344566788888874322 3345555555543322122222223333343
Q ss_pred cCC-hhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHH
Q psy14164 213 REN-EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHL 291 (361)
Q Consensus 213 r~~-~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~a 291 (361)
.++ |.. +...+..|+++|..+..-+|.++..+|..+...-+-.+. ...+++.++.++|.++ +...|
T Consensus 179 ~~f~P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~------~~~eA 245 (262)
T PF14225_consen 179 EAFFPDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTD------LWMEA 245 (262)
T ss_pred HHhCchh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCc------cHHHH
Confidence 333 221 123456789999999999999999999999976322222 4556899999999875 66678
Q ss_pred HHHHHHHHhcC
Q psy14164 292 LSALASLIKDS 302 (361)
Q Consensus 292 l~aL~~L~~~~ 302 (361)
+..|..++..+
T Consensus 246 L~VLd~~v~~s 256 (262)
T PF14225_consen 246 LEVLDEIVTRS 256 (262)
T ss_pred HHHHHHHHhhc
Confidence 88887777654
No 194
>KOG1243|consensus
Probab=92.09 E-value=2.6 Score=44.60 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=56.8
Q ss_pred HCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhc
Q psy14164 139 KMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR 213 (361)
Q Consensus 139 ~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r 213 (361)
.-+.+|.|+++..+.+..||.. +|.++-+.-+..+..+++.-++|.+..-+.. +++.+|..++-++..++-
T Consensus 328 q~~i~p~l~kLF~~~Dr~iR~~---LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~D-Tn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSPDRQIRLL---LLQYIEKYIDHLTKQILNDQIFPHVALGFLD-TNATLREQTLKSMAVLAP 398 (690)
T ss_pred ccchhhhHHHHhcCcchHHHHH---HHHhHHHHhhhcCHHhhcchhHHHHHhhccc-CCHHHHHHHHHHHHHHHh
Confidence 3457899999999999999954 5555555555566777888999999998884 788999999999988864
No 195
>KOG1943|consensus
Probab=92.03 E-value=2 Score=47.34 Aligned_cols=152 Identities=11% Similarity=0.119 Sum_probs=99.0
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHH
Q psy14164 141 GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLK 220 (361)
Q Consensus 141 Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~ 220 (361)
+.+..|+.-|++.+..||+.||+-+|.+++.-|. .+...++...+.++....+...=--|+-||+-+++-.----.
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~----~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP----ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH----HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 3466677778889999999999999999999883 233346777777776533334444888899888764322222
Q ss_pred HHHhhCcHHHHHHhhcc--------CCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHH
Q psy14164 221 EFIKRDGFSVLLRCIQS--------KKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHL 291 (361)
Q Consensus 221 ~f~~~ggi~~Lv~lL~s--------~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~a 291 (361)
.+. ..+|.++..|.- ....||-.||+++..+++. .+...+-++..=.-..|+..+-.. ....|..|
T Consensus 417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDr---evncRRAA 491 (1133)
T KOG1943|consen 417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDR---EVNCRRAA 491 (1133)
T ss_pred HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCc---hhhHhHHH
Confidence 222 456777777753 3567999999999999987 333222222211111222333334 67788888
Q ss_pred HHHHHHHHhc
Q psy14164 292 LSALASLIKD 301 (361)
Q Consensus 292 l~aL~~L~~~ 301 (361)
..|+...+..
T Consensus 492 sAAlqE~VGR 501 (1133)
T KOG1943|consen 492 SAALQENVGR 501 (1133)
T ss_pred HHHHHHHhcc
Confidence 8888877754
No 196
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.99 E-value=16 Score=38.29 Aligned_cols=140 Identities=10% Similarity=0.119 Sum_probs=87.5
Q ss_pred HHHHHHhhcCCC--HHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHH
Q psy14164 143 LPVLQPLLEGSD--PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLK 220 (361)
Q Consensus 143 ~~~Lv~LL~s~~--~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~ 220 (361)
+..++.+=+.+. ..|...-...+....++.|+--+.| .|.+.++++-+.+ ++..||..++.-|.-+.-. -.-+.
T Consensus 51 vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V--~~~~~h~lRg~es-kdk~VR~r~lqila~~~d~-v~eID 126 (885)
T COG5218 51 VNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELV--AGTFYHLLRGTES-KDKKVRKRSLQILALLSDV-VREID 126 (885)
T ss_pred HHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHH--HHHHHHHHhcccC-cchhHHHHHHHHHHHHHHh-cchHH
Confidence 444444433322 2344444555555667888764444 4678888888876 7889999999988877643 22345
Q ss_pred HHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC--CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHH
Q psy14164 221 EFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD--NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL 295 (361)
Q Consensus 221 ~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~--~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL 295 (361)
..+-.|.+..|..-+-.....||..|+++++++-.. +++.+ .+..|+.++..+ .+.++|..|+.-+
T Consensus 127 e~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~-------~~n~l~~~vqnD--PS~EVRr~allni 194 (885)
T COG5218 127 EVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR-------IVNLLKDIVQND--PSDEVRRLALLNI 194 (885)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH-------HHHHHHHHHhcC--cHHHHHHHHHHHe
Confidence 555556666676666677899999999999988532 22221 233455666554 1567777655433
No 197
>KOG4653|consensus
Probab=91.93 E-value=8.9 Score=41.67 Aligned_cols=192 Identities=16% Similarity=0.115 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHH
Q psy14164 97 GAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ 176 (361)
Q Consensus 97 ~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q 176 (361)
.+.+.+++..+.++ ...-|-.++..|..++++-+-+..+..-+.+...+..|.+.++-|--.|.+.+..+|.
T Consensus 726 ~e~~qeai~sl~d~--qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce------ 797 (982)
T KOG4653|consen 726 IEPLQEAISSLHDD--QVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE------ 797 (982)
T ss_pred HHHHHHHHHHhcCC--cccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH------
Confidence 45566666555553 2356788999999999987666666667889999999999999988888888888874
Q ss_pred HHHHhcChHHHHHH-hhccCCC--HHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHH
Q psy14164 177 NFIIQTDFLNLLLT-SIEHDSN--TTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL 253 (361)
Q Consensus 177 ~~v~~~g~l~~Ll~-LL~~~~~--~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L 253 (361)
+....++|.|.. ..+.... +.-+-+.=-||.++++--.+-...+.+ -.+...+...++++...|..++..+..|
T Consensus 798 --vy~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~L 874 (982)
T KOG4653|consen 798 --VYPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQL 874 (982)
T ss_pred --hcchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHH
Confidence 456678998888 4432111 123334446666665532222222221 2344455566677888999999999998
Q ss_pred hcCCch-HHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164 254 CTDNNQ-VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP 303 (361)
Q Consensus 254 ~~~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~ 303 (361)
|.-..- ..+.+. .++..++.+...+ +...+|..|...|..++.+--
T Consensus 875 cq~~a~~vsd~~~--ev~~~Il~l~~~d--~s~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 875 CQLLAFQVSDFFH--EVLQLILSLETTD--GSVLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred HHHHhhhhhHHHH--HHHHHHHHHHccC--CchhhHHHHHHHHHHHHhccc
Confidence 864221 112222 3556666776665 467889999999998887553
No 198
>KOG1967|consensus
Probab=91.77 E-value=0.9 Score=49.22 Aligned_cols=146 Identities=14% Similarity=0.191 Sum_probs=105.3
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHh--cChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhH
Q psy14164 142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQ--TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECL 219 (361)
Q Consensus 142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~--~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~ 219 (361)
.+|.|++........+|..-..+|+++..|-|.. .+.. ...+|.|++-|+- +|..+|..++..|.-+..-.+.-+
T Consensus 868 ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~--vllp~~~~LlPLLLq~Ls~-~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 868 IVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQ--VLLPQFPMLLPLLLQALSM-PDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred hHHHHHHHhccCCccchhHHHHHHHHHHhcCCHH--hhccchhhHHHHHHHhcCC-CccchhhhHhhhhhHHHHhccccc
Confidence 4788888887778889999999999999998872 2332 2578888998885 677899999999998877665544
Q ss_pred HHHHhhCcHHHHHHhhccCC---HHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHH
Q psy14164 220 KEFIKRDGFSVLLRCIQSKK---EKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSA 294 (361)
Q Consensus 220 ~~f~~~ggi~~Lv~lL~s~~---~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~a 294 (361)
..-+ .-.+|.+..+=.+.+ .-||.-|..++..|+.--|...-......++..|...|..+ .--+|+.|.++
T Consensus 945 t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk---KRlVR~eAv~t 1018 (1030)
T KOG1967|consen 945 TEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK---KRLVRKEAVDT 1018 (1030)
T ss_pred hHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH---HHHHHHHHHHH
Confidence 4333 234566665544444 78999999999999885554433334456788888888766 55566666554
No 199
>KOG1058|consensus
Probab=91.66 E-value=3.7 Score=43.87 Aligned_cols=152 Identities=14% Similarity=0.216 Sum_probs=81.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHH-------------HHHH
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSL-------------YAVS 209 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al-------------~ALS 209 (361)
+|.+..+|+|.++=||..|.-+|.+|-++... ++ -++=..+-..|..+.++..+++|. |..+
T Consensus 136 ~p~IracleHrhsYVRrNAilaifsIyk~~~~----L~-pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~ 210 (948)
T KOG1058|consen 136 MPSIRACLEHRHSYVRRNAILAIFSIYKNFEH----LI-PDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLS 210 (948)
T ss_pred HHHHHHHHhCcchhhhhhhheeehhHHhhhhh----hc-CChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHh
Confidence 55666799999999999999999999887211 11 011112222333334444444433 4444
Q ss_pred HHhcCC---hhhHH---HHHh----------hCcHHHHHHhhccCCHHHHHHH-----------------HHHHHHHhcC
Q psy14164 210 CLVREN---EECLK---EFIK----------RDGFSVLLRCIQSKKEKLVIKS-----------------CFLIACLCTD 256 (361)
Q Consensus 210 ~l~r~~---~~~~~---~f~~----------~ggi~~Lv~lL~s~~~~v~~kA-----------------~~ll~~L~~~ 256 (361)
|+-.-. +.-+. +|+. .--+..+..+|.+.+..|+-+| +..+..|+..
T Consensus 211 ~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~k 290 (948)
T KOG1058|consen 211 NIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVK 290 (948)
T ss_pred hHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHh
Confidence 443211 11111 1111 1124556667776554444444 4433333332
Q ss_pred CchHH------HHHH---------hCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164 257 NNQVK------QVLL---------SMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 257 ~~~~~------~~l~---------~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
.++.. ..+. =.|++--++.+|+++ |-+++.+++....-|+...
T Consensus 291 esdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~---dldvr~Ktldi~ldLvssr 348 (948)
T KOG1058|consen 291 ESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSP---DLDVRSKTLDIALDLVSSR 348 (948)
T ss_pred ccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcc---cccHHHHHHHHHHhhhhhc
Confidence 22111 1111 135566677888888 9999999999888887644
No 200
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=91.64 E-value=3.2 Score=45.19 Aligned_cols=132 Identities=18% Similarity=0.233 Sum_probs=92.0
Q ss_pred HHHHHHCCCHHHHHHhhcC-----CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhc---cCCC----HHHH
Q psy14164 134 ANDFLKMGGLPVLQPLLEG-----SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE---HDSN----TTVQ 201 (361)
Q Consensus 134 a~~~~~~Gg~~~Lv~LL~s-----~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~---~~~~----~~v~ 201 (361)
++.+.+.||+..++.+|.+ ....+-...+.++..++.- +.+++.+++.|+++.|+..|. .... ..+-
T Consensus 110 ~~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~ 188 (802)
T PF13764_consen 110 ASVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIA 188 (802)
T ss_pred HHHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHH
Confidence 4556778999999999876 3346777788999988865 889999999999999999774 2212 3555
Q ss_pred HHHHHHHHHHhcCC----hhhHHHHHhhCc--------HHHHHHhhccC----CHHHHHHHHHHHHHHhcCCchHHHHHH
Q psy14164 202 VKSLYAVSCLVREN----EECLKEFIKRDG--------FSVLLRCIQSK----KEKLVIKSCFLIACLCTDNNQVKQVLL 265 (361)
Q Consensus 202 ~~Al~ALS~l~r~~----~~~~~~f~~~gg--------i~~Lv~lL~s~----~~~v~~kA~~ll~~L~~~~~~~~~~l~ 265 (361)
.+.+..+-.++..- ......+....| +..|++.+.++ +.++..-.+.+|-+|+.++++..+.++
T Consensus 189 E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv 268 (802)
T PF13764_consen 189 EQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALV 268 (802)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHH
Confidence 56665555554321 111122223333 66777777754 689999999999999998876665555
Q ss_pred h
Q psy14164 266 S 266 (361)
Q Consensus 266 ~ 266 (361)
+
T Consensus 269 ~ 269 (802)
T PF13764_consen 269 E 269 (802)
T ss_pred H
Confidence 3
No 201
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=91.39 E-value=4.7 Score=39.10 Aligned_cols=120 Identities=15% Similarity=0.124 Sum_probs=87.5
Q ss_pred HHHHCCCHHHHHHhhc---CCCHHHHHHHHHHHHHHhhcCHHHHH------------------------------HHHh-
Q psy14164 136 DFLKMGGLPVLQPLLE---GSDPELRWRAAETVADIVQNNPFSQN------------------------------FIIQ- 181 (361)
Q Consensus 136 ~~~~~Gg~~~Lv~LL~---s~~~~vr~~Aa~~Lg~iaqnn~~~q~------------------------------~v~~- 181 (361)
.+.-.|-+.+-++.|. -++.+++..--++=..+.++.....- .+.+
T Consensus 274 ~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kd 353 (432)
T COG5231 274 SPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKD 353 (432)
T ss_pred hhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhh
Confidence 3444565666677654 37788888877777777776433211 1111
Q ss_pred -cChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhc
Q psy14164 182 -TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT 255 (361)
Q Consensus 182 -~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~ 255 (361)
...+..|.++++...+.....-|+.-|..++|..|.....+...||-+.+++++++++++|+-+|..++..+.+
T Consensus 354 ny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 354 NYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred hHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 13667788888754333355568999999999999998888889999999999999999999999998877654
No 202
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=91.30 E-value=3.4 Score=34.69 Aligned_cols=96 Identities=8% Similarity=0.081 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCC
Q psy14164 202 VKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE 280 (361)
Q Consensus 202 ~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~ 280 (361)
...+..|+.+++..+.... .++..|..-|+++++.++..|..++-.++.+ ++.+...+.+..++..|+.++...
T Consensus 18 ~~~il~icd~I~~~~~~~k-----~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~ 92 (133)
T cd03561 18 WALNLELCDLINLKPNGPK-----EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS 92 (133)
T ss_pred HHHHHHHHHHHhCCCCCHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC
Confidence 5567777888876543322 2456778888899999999999999999988 455888888888988899999752
Q ss_pred CCCChhHHHHHHHHHHHHHhcC
Q psy14164 281 DALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 281 ~~~d~~~~e~al~aL~~L~~~~ 302 (361)
...+..++.+++..|.......
T Consensus 93 ~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 93 PKYDPKVREKALELILAWSESF 114 (133)
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 1237899999999998777544
No 203
>KOG1077|consensus
Probab=91.21 E-value=11 Score=40.33 Aligned_cols=69 Identities=17% Similarity=0.134 Sum_probs=47.8
Q ss_pred HhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCH-HHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHH
Q psy14164 107 LKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGL-PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF 178 (361)
Q Consensus 107 L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~-~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~ 178 (361)
|.+++..+-.|..|.-.|..+... .-|++..|+| .+++.||...+-.|-..|...|--++.+||+.+..
T Consensus 155 LvS~~~~~~vkqkaALclL~L~r~---spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~ 224 (938)
T KOG1077|consen 155 LVSGSSMDYVKQKAALCLLRLFRK---SPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKT 224 (938)
T ss_pred HhCCcchHHHHHHHHHHHHHHHhc---CccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhh
Confidence 444433344454444444444432 3456667776 77899999999999999999999999999986654
No 204
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=91.21 E-value=3.9 Score=36.45 Aligned_cols=70 Identities=19% Similarity=0.249 Sum_probs=57.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhc---CHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhH
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQN---NPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECL 219 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn---n~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~ 219 (361)
++.++++..+++..+|..|..+|+.+.+. ||. -.+|.|+.|..+ +++.+|..|...+..+...++.-.
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~--------~cvp~lIAL~ts-~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK--------QCVPTLIALETS-PNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH--------HHHhHhhhhhCC-CChHHHHHHHHHHHHHHHHhHHHH
Confidence 56788888899999999999999988764 442 368999999886 788999999999999987766544
Q ss_pred HH
Q psy14164 220 KE 221 (361)
Q Consensus 220 ~~ 221 (361)
..
T Consensus 81 ~~ 82 (187)
T PF12830_consen 81 ES 82 (187)
T ss_pred HH
Confidence 33
No 205
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=91.11 E-value=22 Score=37.30 Aligned_cols=147 Identities=18% Similarity=0.251 Sum_probs=75.4
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHH--------HHHHHH---------------hcC---hHHHHHHhhc--
Q psy14164 142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPF--------SQNFII---------------QTD---FLNLLLTSIE-- 193 (361)
Q Consensus 142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~--------~q~~v~---------------~~g---~l~~Ll~LL~-- 193 (361)
.+..|-.+|+++....|..|.++|..+++..|. .-..+- +.| -+..|++++.
T Consensus 304 ~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sf 383 (898)
T COG5240 304 TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSF 383 (898)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHH
Confidence 355566688999999999999999999887552 222111 111 1111111111
Q ss_pred -cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHh-hccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHH
Q psy14164 194 -HDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRC-IQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE 271 (361)
Q Consensus 194 -~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~l-L~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~ 271 (361)
++-+...+.-++.||-+++-.+|..+...+ ..|... ++.+..+.++.+.-+|+.+....|+.++.. +.
T Consensus 384 vhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l-----~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEra-----Le 453 (898)
T COG5240 384 VHDMSDGFKIIAIDALRSLSLLFPSKKLSYL-----DFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERA-----LE 453 (898)
T ss_pred HHhhccCceEEeHHHHHHHHhhCcHHHHHHH-----HHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHH-----HH
Confidence 111223333344444444444444433332 122222 233455666666666666666665555443 34
Q ss_pred HHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164 272 QMCVLIDIEDALDTEMNEHLLSALASLIKDSP 303 (361)
Q Consensus 272 ~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~ 303 (361)
.||.+++ |-++.+.+++.|.-|-...|
T Consensus 454 ~LC~fIE-----Dcey~~I~vrIL~iLG~EgP 480 (898)
T COG5240 454 VLCTFIE-----DCEYHQITVRILGILGREGP 480 (898)
T ss_pred HHHHHHh-----hcchhHHHHHHHHHhcccCC
Confidence 5555554 33555556666655555554
No 206
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=91.03 E-value=2.2 Score=36.41 Aligned_cols=93 Identities=12% Similarity=0.233 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCC
Q psy14164 202 VKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE 280 (361)
Q Consensus 202 ~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~ 280 (361)
....-.|+-+++..+.+. ..++..|.+=|.++++.++..|..++-.++.+ +..+...+.+.+++..|+.++...
T Consensus 22 w~~ileicD~In~~~~~~-----k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~ 96 (142)
T cd03569 22 LASILEICDMIRSKDVQP-----KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTT 96 (142)
T ss_pred HHHHHHHHHHHhCCCCCH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHccc
Confidence 445556677776554331 23566788888899999999999999999988 677888999999999999999742
Q ss_pred CCCChhHHHHHHHHHHHHHhc
Q psy14164 281 DALDTEMNEHLLSALASLIKD 301 (361)
Q Consensus 281 ~~~d~~~~e~al~aL~~L~~~ 301 (361)
.+..++++++..+..-...
T Consensus 97 --~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 97 --KNEEVRQKILELIQAWALA 115 (142)
T ss_pred --CCHHHHHHHHHHHHHHHHH
Confidence 2789999999999877743
No 207
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=90.88 E-value=5.7 Score=41.47 Aligned_cols=127 Identities=13% Similarity=0.174 Sum_probs=75.1
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhhcC-cccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcCh
Q psy14164 106 TLKENQDQKDICIGALDNLSDYICS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDF 184 (361)
Q Consensus 106 ~L~~~~~~~~~~~~Al~~L~~lve~-idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~ 184 (361)
+|.....+...|.-|.+-+..+... .+.++. ++..++.|...++..||..|.+.|..+|.+|+..-.. +
T Consensus 28 il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-----v 97 (556)
T PF05918_consen 28 ILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-----V 97 (556)
T ss_dssp HHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH-----H
T ss_pred HHHHccCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH-----H
Confidence 3333334566777777777666543 233333 5777888888899999999999999999998765544 4
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhc---cCCHHHHHHHHHHHH
Q psy14164 185 LNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQ---SKKEKLVIKSCFLIA 251 (361)
Q Consensus 185 l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~---s~~~~v~~kA~~ll~ 251 (361)
.-.|++||.++ +......+=.+|..+.+..+... +..|...+. +.+..+|.++.-+|+
T Consensus 98 aDvL~QlL~td-d~~E~~~v~~sL~~ll~~d~k~t--------L~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 98 ADVLVQLLQTD-DPVELDAVKNSLMSLLKQDPKGT--------LTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHHHHHHTT----HHHHHHHHHHHHHHHHH-HHHH--------HHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-cHHHHHHHHHHHHHHHhcCcHHH--------HHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 56789999974 44555566667777776555432 222222222 457788888886664
No 208
>KOG2973|consensus
Probab=90.82 E-value=16 Score=35.27 Aligned_cols=240 Identities=16% Similarity=0.111 Sum_probs=130.3
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHH
Q psy14164 95 NVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPF 174 (361)
Q Consensus 95 ~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~ 174 (361)
++...||..++.+..... -..|...|-++..+-.-++.+... -+..++..+..+...+-...|.++.|+++....
T Consensus 41 ~~~~~lk~l~qL~~~~~~----~~~a~~alVnlsq~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~ 115 (353)
T KOG2973|consen 41 YSEALLKDLTQLLKDLDP----AEPAATALVNLSQKEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDE 115 (353)
T ss_pred chhhhHHHHHHHccCccc----ccHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchH
Confidence 455566666665555322 223344444445444445555554 456667777777778888899999999998877
Q ss_pred HHHHHHhc-----ChHHHHH-HhhccCCCH-HHHHHHHHHHHHHhcCChhhHHHHHhhCcHH--HHHHhhccCCHHHHHH
Q psy14164 175 SQNFIIQT-----DFLNLLL-TSIEHDSNT-TVQVKSLYAVSCLVRENEECLKEFIKRDGFS--VLLRCIQSKKEKLVIK 245 (361)
Q Consensus 175 ~q~~v~~~-----g~l~~Ll-~LL~~~~~~-~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~--~Lv~lL~s~~~~v~~k 245 (361)
+....... .++..|+ ...+++.+. .---..+.-++||.+ .+.++.-|....-++ .|.. +.+.+..||+.
T Consensus 116 ~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~-~~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~ 193 (353)
T KOG2973|consen 116 VAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ-FEAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRG 193 (353)
T ss_pred HHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh-hhhhhhHhcchhhhhHhhhhc-ccccchhhhcc
Confidence 76655432 2344444 444443221 112345566677776 566666666544222 2222 33355666654
Q ss_pred -HHHHHHHHhcCCchHHHHHHh--CCcHHHHH---------------------HhccCC--CCCChhHHHHHHHHHHHHH
Q psy14164 246 -SCFLIACLCTDNNQVKQVLLS--MGMVEQMC---------------------VLIDIE--DALDTEMNEHLLSALASLI 299 (361)
Q Consensus 246 -A~~ll~~L~~~~~~~~~~l~~--~g~i~~Lv---------------------~lL~~~--~~~d~~~~e~al~aL~~L~ 299 (361)
.+..|.|.|...+.. ..++. .++++.|+ ++|..+ -+.|+++|...+.+|..|.
T Consensus 194 GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLc 272 (353)
T KOG2973|consen 194 GVAGTLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLC 272 (353)
T ss_pred chHHHHHhhhccchhH-HHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHH
Confidence 455666766543322 22221 12233222 444422 1457889999999998887
Q ss_pred hcChHHHHhhccCcchHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHhcC
Q psy14164 300 KDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEVFE 349 (361)
Q Consensus 300 ~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~il~~~f~ 349 (361)
...+. -+..+..+ . + .+++.+...++..+..+.|.++++..-.
T Consensus 273 aT~~G-Re~lR~kg-v-Y----pilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 273 ATRAG-REVLRSKG-V-Y----PILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred hhhHh-HHHHHhcC-c-h----HHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 54431 11122221 1 1 2344555555677788888887776655
No 209
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=90.81 E-value=2.2 Score=36.32 Aligned_cols=96 Identities=11% Similarity=0.158 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCC
Q psy14164 202 VKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE 280 (361)
Q Consensus 202 ~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~ 280 (361)
...+-.|+-+++..+..- ..++..|..-|+++++.++..|..++-.++.+ ++.+...+.+.+++..|+.++...
T Consensus 19 w~~ileicD~In~~~~~~-----k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k 93 (139)
T cd03567 19 WEAIQAFCEQINKEPEGP-----QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPK 93 (139)
T ss_pred HHHHHHHHHHHHcCCccH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccc
Confidence 345555665665444321 23566788888999999999999999999987 678889999999999999999631
Q ss_pred ---CCCChhHHHHHHHHHHHHHhcC
Q psy14164 281 ---DALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 281 ---~~~d~~~~e~al~aL~~L~~~~ 302 (361)
...+..++++++..|..-....
T Consensus 94 ~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 94 YLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 1227899999999887776433
No 210
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=90.74 E-value=17 Score=35.20 Aligned_cols=150 Identities=17% Similarity=0.248 Sum_probs=92.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCc---ccHHHHHHCCCHHHHHHhhcC--CCHHHHHHHHHHHHHHh---h
Q psy14164 99 ELEKIIKTLKENQDQKDICIGALDNLSDYICSI---DYANDFLKMGGLPVLQPLLEG--SDPELRWRAAETVADIV---Q 170 (361)
Q Consensus 99 ~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~i---dna~~~~~~Gg~~~Lv~LL~s--~~~~vr~~Aa~~Lg~ia---q 170 (361)
++..++..++.+.. ++..-|+..+.-++=++ +.+..+.+. ..|+|.+.+.. ..+.+|..++.+||-++ .
T Consensus 87 L~~~~~k~lkkg~~--~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~ 163 (309)
T PF05004_consen 87 LLDALLKSLKKGKS--EEQALAARALALLALTLGAGEDSEEIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGG 163 (309)
T ss_pred HHHHHHHHhccCCH--HHHHHHHHHHHHHhhhcCCCccHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhc
Confidence 34444444444322 55666766666665453 456666553 57778787764 34677888887888764 3
Q ss_pred cCHHHHHHHHhcChHHHHHHh--hccC---------CCHHHHHHHHHHHHHHhcCChhh-HHHHHhhCcHHHHHHhhccC
Q psy14164 171 NNPFSQNFIIQTDFLNLLLTS--IEHD---------SNTTVQVKSLYAVSCLVRENEEC-LKEFIKRDGFSVLLRCIQSK 238 (361)
Q Consensus 171 nn~~~q~~v~~~g~l~~Ll~L--L~~~---------~~~~v~~~Al~ALS~l~r~~~~~-~~~f~~~ggi~~Lv~lL~s~ 238 (361)
+.+......+ ..+..++.. ++.+ ++..+...|+.+-+-|+..-+.. ...+. ...++.|+.+|.++
T Consensus 164 ~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~ 240 (309)
T PF05004_consen 164 SDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSD 240 (309)
T ss_pred CChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCC
Confidence 3333332111 234433332 2211 23578899999988888766552 23332 45689999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q psy14164 239 KEKLVIKSCFLIACLC 254 (361)
Q Consensus 239 ~~~v~~kA~~ll~~L~ 254 (361)
+..||.-|.-+|+-|.
T Consensus 241 d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 241 DVDVRIAAGEAIALLY 256 (309)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999888664
No 211
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=90.56 E-value=6 Score=35.57 Aligned_cols=151 Identities=15% Similarity=0.103 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHh----------------hCcHHHHHHhhcc------CCHHHHHHHHHHHHHHhcC
Q psy14164 199 TVQVKSLYAVSCLVRENEECLKEFIK----------------RDGFSVLLRCIQS------KKEKLVIKSCFLIACLCTD 256 (361)
Q Consensus 199 ~v~~~Al~ALS~l~r~~~~~~~~f~~----------------~ggi~~Lv~lL~s------~~~~v~~kA~~ll~~L~~~ 256 (361)
...-.++..|||++|.... ...+++ ...+..|++++.. ....-....+.+++|+++
T Consensus 10 ~~adl~~MLLsNlT~~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~- 87 (192)
T PF04063_consen 10 PLADLACMLLSNLTRSDSG-CEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ- 87 (192)
T ss_pred chHHHHHHHHHHhccchHH-HHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC-
Confidence 4566788889999985443 333332 2245677777654 234455667888888866
Q ss_pred CchHHHHHHhCC--c--HHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHHhhcChhh
Q psy14164 257 NNQVKQVLLSMG--M--VEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEV 332 (361)
Q Consensus 257 ~~~~~~~l~~~g--~--i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e 332 (361)
.++.|+.+++.. . +..|+.++.+. +.--|.-++.+|.|++-+....-....... .++|-..+-.+.+.++
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~---s~iRR~Gva~~IrNccFd~~~H~~LL~~~~---~~iLp~LLlPLaGpEe 161 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHK---SVIRRGGVAGTIRNCCFDTDSHEWLLSDDE---VDILPYLLLPLAGPEE 161 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccC---cHHHHHHHHHHHHHhhccHhHHHHhcCchh---hhhHHHHHhhccCCCc
Confidence 678999998653 3 66777777776 777888899999999866543322221111 4567777888888877
Q ss_pred hHHH-HHHHHHHHHHhcCCCCCcccCC
Q psy14164 333 YHKE-LEYVNSVLTEVFEEDSPEEFDH 358 (361)
Q Consensus 333 ~~~e-~~~~~~il~~~f~~~~~~~~~~ 358 (361)
+.++ .+..---|+ |-+.+..=|.|.
T Consensus 162 ~d~ee~~~lp~~LQ-~L~~dK~RE~d~ 187 (192)
T PF04063_consen 162 LDEEEMEKLPPELQ-LLPPDKKREPDP 187 (192)
T ss_pred CCHHHHHcCCHHHh-hcCCCCccCCCc
Confidence 7664 555554554 334333333443
No 212
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=90.52 E-value=2.8 Score=40.15 Aligned_cols=111 Identities=17% Similarity=0.251 Sum_probs=79.9
Q ss_pred ChHHHHH-HhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchH
Q psy14164 183 DFLNLLL-TSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQV 260 (361)
Q Consensus 183 g~l~~Ll-~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~ 260 (361)
+.+..|+ .-+.+ .+..+|..|+-+|+-.+--+...... .++.+.+.++.++..++..|+.+|.+++.. +...
T Consensus 26 ~ll~~lI~P~v~~-~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQS-SDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4455544 45555 56799999999999766544433222 356788888888999999999999998865 3322
Q ss_pred HHHHH-------hCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164 261 KQVLL-------SMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 261 ~~~l~-------~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
..... ...++..+.+.|.+. +++++..+..++..|+-.+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSE---NPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHhcC
Confidence 22222 346778888889888 8899999999999988544
No 213
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.48 E-value=1.4 Score=34.77 Aligned_cols=72 Identities=14% Similarity=0.269 Sum_probs=56.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChh
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEE 217 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~ 217 (361)
+...+..|+++.+.||..++..|..+..... ....--.+++..++..|.+ ++.-|=-.|+-+|+.++..+|.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d-~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKD-EDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHHHHChH
Confidence 4556778899999999999999999998877 1111224678888888886 5778999999999999987765
No 214
>KOG2956|consensus
Probab=89.95 E-value=17 Score=37.08 Aligned_cols=146 Identities=10% Similarity=0.093 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCC--CHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCHH
Q psy14164 98 AELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMG--GLPVLQPLLEG-SDPELRWRAAETVADIVQNNPF 174 (361)
Q Consensus 98 ~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~G--g~~~Lv~LL~s-~~~~vr~~Aa~~Lg~iaqnn~~ 174 (361)
+.+...+++|.+ +.+.-.|.-||..|..++.+.. ..|...- ++..++..=.. .+..++.++--|+..+++..|.
T Consensus 329 ~iL~~l~EvL~d-~~~~~~k~laLrvL~~ml~~Q~--~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~ 405 (516)
T KOG2956|consen 329 EILLLLLEVLSD-SEDEIIKKLALRVLREMLTNQP--ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL 405 (516)
T ss_pred HHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHhch--HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch
Confidence 344555566655 3445678889999999887542 2222110 23334443333 4445566666667777777775
Q ss_pred HHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHh
Q psy14164 175 SQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLC 254 (361)
Q Consensus 175 ~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~ 254 (361)
..-. .+..++-. .+...-..++-.+..++..-+.-.-.-+-....|.+++.-.+.+..||+.|+|++.++.
T Consensus 406 ~~I~--------~i~~~Ilt-~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 406 QCIV--------NISPLILT-ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hHHH--------HHhhHHhc-CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 4322 22223322 23344444555555555432211111112467789999999999999999999999887
Q ss_pred c
Q psy14164 255 T 255 (361)
Q Consensus 255 ~ 255 (361)
.
T Consensus 477 ~ 477 (516)
T KOG2956|consen 477 N 477 (516)
T ss_pred H
Confidence 5
No 215
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.88 E-value=1.3 Score=45.90 Aligned_cols=98 Identities=9% Similarity=0.098 Sum_probs=67.9
Q ss_pred HHHHHHh-hcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy14164 143 LPVLQPL-LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKE 221 (361)
Q Consensus 143 ~~~Lv~L-L~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~ 221 (361)
+..|+.. .+..+.+||.+|.-+||-+|-.+ ...++..+++|....+..||.-.+.||+-.|.|.-..
T Consensus 553 v~~lLh~avsD~nDDVrRAAViAlGfvc~~D---------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~--- 620 (926)
T COG5116 553 VSTLLHYAVSDGNDDVRRAAVIALGFVCCDD---------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK--- 620 (926)
T ss_pred HhhhheeecccCchHHHHHHHHheeeeEecC---------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH---
Confidence 3444443 44567788888888888777433 4567778888887677888888888888777764332
Q ss_pred HHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC
Q psy14164 222 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD 256 (361)
Q Consensus 222 f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~ 256 (361)
-.+..|-.++..+..-||+.|+-+++-++..
T Consensus 621 ----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q 651 (926)
T COG5116 621 ----VATDILEALMYDTNDFVRQSAMIAVGMILMQ 651 (926)
T ss_pred ----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhh
Confidence 1234555667777888888888888876654
No 216
>KOG0413|consensus
Probab=89.38 E-value=2.1 Score=46.90 Aligned_cols=128 Identities=10% Similarity=0.160 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHh
Q psy14164 155 PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRC 234 (361)
Q Consensus 155 ~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~l 234 (361)
+.||..+.-.+|++|--+... ....+|.|++-|.......+|-+.+-|++-+|-++..-.. .-+|.|...
T Consensus 945 ~~vra~~vvTlakmcLah~~L-----aKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d-----~YiP~I~~~ 1014 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRL-----AKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTD-----RYIPMIAAS 1014 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHH-----HhhHHHHHH
Confidence 458999999999998654443 2347999999998766778999999999999886654333 247889999
Q ss_pred hccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCC--cHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164 235 IQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG--MVEQMCVLIDIEDALDTEMNEHLLSALASLIKD 301 (361)
Q Consensus 235 L~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g--~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~ 301 (361)
|.+++.-||+.+.-+|++|++.+ ++.=.| ++..+..++.. +.+++.-+-..+..+++.
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~-----~vKw~G~Lf~Rf~l~l~D~----~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFG-----IVKWNGELFIRFMLALLDA----NEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhh-----hhhcchhhHHHHHHHHccc----CHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998642 111123 35556666654 678887777777777753
No 217
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=89.37 E-value=4.1 Score=34.27 Aligned_cols=93 Identities=11% Similarity=0.177 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCC
Q psy14164 202 VKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE 280 (361)
Q Consensus 202 ~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~ 280 (361)
...+-.|+-+++..+...+ .++..|..=|+++++.++..|..++-.++.+ ++.+...+.+.+++..|+.++...
T Consensus 18 w~~~l~icD~i~~~~~~~k-----~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~ 92 (133)
T smart00288 18 WELILEICDLINSTPDGPK-----DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPK 92 (133)
T ss_pred HHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCC
Confidence 4455666777776543322 2355677888899999999999999999988 677888899999999999999875
Q ss_pred CCCChhHHHHHHHHHHHHHh
Q psy14164 281 DALDTEMNEHLLSALASLIK 300 (361)
Q Consensus 281 ~~~d~~~~e~al~aL~~L~~ 300 (361)
. ..+.++++++..+..-..
T Consensus 93 ~-~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 93 Y-PLPLVKKRILELIQEWAD 111 (133)
T ss_pred C-CcHHHHHHHHHHHHHHHH
Confidence 1 122389999988877664
No 218
>KOG1077|consensus
Probab=89.35 E-value=19 Score=38.57 Aligned_cols=169 Identities=11% Similarity=0.195 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCC
Q psy14164 117 CIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS 196 (361)
Q Consensus 117 ~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~ 196 (361)
+-..|-+...++-..|....+.. ..+..|-++|.+.+..+|=.|+.-+..++.. ...++.+-.+ ...++..|+.+.
T Consensus 306 ~naVLFeaI~l~~h~D~e~~ll~-~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkter 381 (938)
T KOG1077|consen 306 KNAVLFEAISLAIHLDSEPELLS-RAVNQLGQFLSHRETNIRYLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTER 381 (938)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHhhcccccchhhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhcccc
Confidence 34444444555555554433321 2477777889999999999999999999876 4455555444 888899999778
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc-------hH-------HH
Q psy14164 197 NTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN-------QV-------KQ 262 (361)
Q Consensus 197 ~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~-------~~-------~~ 262 (361)
|.++|++|+.-|-.||-- .+.+.++ .-|.+-|.+.+..+|...+.=++-|+.... +. ..
T Consensus 382 DvSirrravDLLY~mcD~--~Nak~IV-----~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriag 454 (938)
T KOG1077|consen 382 DVSIRRRAVDLLYAMCDV--SNAKQIV-----AELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAG 454 (938)
T ss_pred chHHHHHHHHHHHHHhch--hhHHHHH-----HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc
Confidence 999999999999999852 2333443 344555566677777666555554443210 11 11
Q ss_pred HHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q psy14164 263 VLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK 300 (361)
Q Consensus 263 ~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~ 300 (361)
..++.++-..+++..-+ +.+++..|...+...++
T Consensus 455 d~vsdeVW~RvvQiVvN----nedlq~yaak~~fe~Lq 488 (938)
T KOG1077|consen 455 DYVSDEVWYRVVQIVVN----NEDLQGYAAKRLFEYLQ 488 (938)
T ss_pred ccccHHHHHHhheeEec----chhhhHHHHHHHHHHHh
Confidence 23345566666666553 56777777777666654
No 219
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=89.25 E-value=36 Score=36.80 Aligned_cols=165 Identities=11% Similarity=0.154 Sum_probs=104.0
Q ss_pred CCCHHhHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhc-C--
Q psy14164 76 SMNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLE-G-- 152 (361)
Q Consensus 76 ~~s~e~~~~L~eal~~~~~~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~-s-- 152 (361)
-+|+|+-+.+++ |+.+.+.+-+....+.... + ++|+. +.-.+..-.-...| .|.++.++..|. +
T Consensus 356 c~see~eElfEn-------Dp~eyirry~df~d~g~sp-d--laal~-fl~~~~sKrke~Tf--qgiLsf~~sil~qsaa 422 (970)
T COG5656 356 CLSEEEEELFEN-------DPDEYIRRYYDFFDNGLSP-D--LAALF-FLIISKSKRKEETF--QGILSFLLSILGQSAA 422 (970)
T ss_pred CCChhhHHHHhc-------CHHHHHHHhcchhcCCCCh-h--HHHHH-HHHHHhcccchhhh--hhHHHHHHHHHhcccC
Confidence 466777666655 7788888887777664433 2 12221 22222222222223 366788888773 2
Q ss_pred -----CCHHHHHHHHHHHHHHhh--cCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhh
Q psy14164 153 -----SDPELRWRAAETVADIVQ--NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKR 225 (361)
Q Consensus 153 -----~~~~vr~~Aa~~Lg~iaq--nn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ 225 (361)
.++.-..-|++.++++.. .-+..-..+++.=++++++.-+++ +.--++..||..||.+-.+.+.. .+-.
T Consensus 423 ~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s-~ygfL~Srace~is~~eeDfkd~---~ill 498 (970)
T COG5656 423 TPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRS-NYGFLKSRACEFISTIEEDFKDN---GILL 498 (970)
T ss_pred CCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcC-cccchHHHHHHHHHHHHHhcccc---hHHH
Confidence 223445668888888764 222223334555566777777775 45589999999999985554432 2234
Q ss_pred CcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q psy14164 226 DGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN 257 (361)
Q Consensus 226 ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~ 257 (361)
..++....+|++.+-.|+..|+.++..+..+.
T Consensus 499 ~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 499 EAYENTHNCLKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence 56777888999999999999999999998864
No 220
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=89.21 E-value=7.4 Score=41.46 Aligned_cols=144 Identities=17% Similarity=0.208 Sum_probs=105.0
Q ss_pred CCHHHHHH-hhcC----CCHHHHHHHHHHHHHHh-hcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcC
Q psy14164 141 GGLPVLQP-LLEG----SDPELRWRAAETVADIV-QNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRE 214 (361)
Q Consensus 141 Gg~~~Lv~-LL~s----~~~~vr~~Aa~~Lg~ia-qnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~ 214 (361)
|-+.|+|. ...+ +++.++..|--+|..+. -.+..|- .-+|.|+..+...+++.+|.+|+-+++-++--
T Consensus 891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~------ehlpllIt~mek~p~P~IR~NaVvglgD~~vc 964 (1128)
T COG5098 891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS------EHLPLLITSMEKHPIPRIRANAVVGLGDFLVC 964 (1128)
T ss_pred hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHhhCCCcceeccceeecccccee
Confidence 45666665 3333 68899988888887753 3344333 35899999999768899999999999987653
Q ss_pred ChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHH
Q psy14164 215 NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSA 294 (361)
Q Consensus 215 ~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~a 294 (361)
+..+++.+ -..|.+-|.+.+..||+-+...++.|.-.+ .+.-.|-++.++.+|..+ |..+.+.|-..
T Consensus 965 ----fN~~~de~-t~yLyrrL~De~~~V~rtclmti~fLilag-----q~KVKGqlg~ma~~L~de---da~Isdmar~f 1031 (1128)
T COG5098 965 ----FNTTADEH-THYLYRRLGDEDADVRRTCLMTIHFLILAG-----QLKVKGQLGKMALLLTDE---DAEISDMARHF 1031 (1128)
T ss_pred ----hhhhhHHH-HHHHHHHhcchhhHHHHHHHHHHHHHHHcc-----ceeeccchhhhHhhccCC---cchHHHHHHHH
Confidence 33344332 245666677788999999999999887543 122358888999999998 99999999888
Q ss_pred HHHHHhcCh
Q psy14164 295 LASLIKDSP 303 (361)
Q Consensus 295 L~~L~~~~~ 303 (361)
+..++....
T Consensus 1032 ft~~a~KdN 1040 (1128)
T COG5098 1032 FTQIAKKDN 1040 (1128)
T ss_pred HHHHHhccc
Confidence 888887554
No 221
>KOG1060|consensus
Probab=89.19 E-value=2.7 Score=45.07 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=28.0
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q psy14164 145 VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV 212 (361)
Q Consensus 145 ~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~ 212 (361)
-|+.||++.+..|...|+.+|-.+.|++|..-. .++..|.+++.+-.-+..|...+|-++-.|
T Consensus 433 gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~-----~ii~~La~lldti~vp~ARA~IiWLige~~ 495 (968)
T KOG1060|consen 433 GLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHL-----EILFQLARLLDTILVPAARAGIIWLIGEYC 495 (968)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHhhChHHHH-----HHHHHHHHHhhhhhhhhhhceeeeeehhhh
Confidence 344445555555555555555555555543211 123344444433222344444445554443
No 222
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=89.15 E-value=6.4 Score=36.39 Aligned_cols=148 Identities=14% Similarity=0.217 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhc-----CCCHHHHHHHHHHHHHHhhcCH-HHHHHHHhcChHHHH
Q psy14164 115 DICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLE-----GSDPELRWRAAETVADIVQNNP-FSQNFIIQTDFLNLL 188 (361)
Q Consensus 115 ~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~-----s~~~~vr~~Aa~~Lg~iaqnn~-~~q~~v~~~g~l~~L 188 (361)
.....||.-|..++...+.+..|.....--.|..+|. ++..-+|..++.+||.+++|.. .+-..+....++|.+
T Consensus 115 nRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 115 NRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred hHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 3456788888888888888888887654333445553 2446799999999999999865 455556678999999
Q ss_pred HHhhccCCCHHHHHHHHHHHHHHhcCChhh------HHHHHhhC-cHHHH-HHhhccCCHHHHHHHHHHHHHHhcCCchH
Q psy14164 189 LTSIEHDSNTTVQVKSLYAVSCLVRENEEC------LKEFIKRD-GFSVL-LRCIQSKKEKLVIKSCFLIACLCTDNNQV 260 (361)
Q Consensus 189 l~LL~~~~~~~v~~~Al~ALS~l~r~~~~~------~~~f~~~g-gi~~L-v~lL~s~~~~v~~kA~~ll~~L~~~~~~~ 260 (361)
++++..+ ++.-+.-|++.+.-+..+...- .+.|...+ .+..+ .++.+.+..++-+.|..+--.|+. +|+.
T Consensus 195 LrIme~g-SElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd-~p~a 272 (315)
T COG5209 195 LRIMELG-SELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD-KPHA 272 (315)
T ss_pred HHHHHhh-hHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC-CHhH
Confidence 9999874 4566666777777776543221 23333222 22233 334455678888887776666544 5655
Q ss_pred HHHH
Q psy14164 261 KQVL 264 (361)
Q Consensus 261 ~~~l 264 (361)
|+.+
T Consensus 273 R~lL 276 (315)
T COG5209 273 RALL 276 (315)
T ss_pred HHHH
Confidence 5544
No 223
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=89.13 E-value=1.8 Score=37.02 Aligned_cols=93 Identities=13% Similarity=0.240 Sum_probs=70.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCCC
Q psy14164 203 KSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIED 281 (361)
Q Consensus 203 ~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~ 281 (361)
..+-.|+-+++..+..- ...+..|..=|.++++.++..|..++-.++.+ +..+...+.+..++..|+.++...
T Consensus 19 ~~il~icD~I~~~~~~~-----k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~- 92 (144)
T cd03568 19 GLILDVCDKVKSDENGA-----KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR- 92 (144)
T ss_pred HHHHHHHHHHhcCCccH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc-
Confidence 34444555555433221 23456777778889999999999999999987 667888999999999999999883
Q ss_pred CCChhHHHHHHHHHHHHHhcC
Q psy14164 282 ALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 282 ~~d~~~~e~al~aL~~L~~~~ 302 (361)
.+..++++++..|...+..-
T Consensus 93 -~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 93 -VHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred -CCHHHHHHHHHHHHHHHHHh
Confidence 28999999999998776433
No 224
>KOG2062|consensus
Probab=88.99 E-value=1.9 Score=45.89 Aligned_cols=89 Identities=10% Similarity=0.076 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHH
Q psy14164 152 GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVL 231 (361)
Q Consensus 152 s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~L 231 (361)
..+.+||..|..+||-++-.+|. .+|..+.+|+...++.||.-|+.||+=.|.|.-.. . .+..|
T Consensus 566 D~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-e------Ai~lL 629 (929)
T KOG2062|consen 566 DVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-E------AINLL 629 (929)
T ss_pred ccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-H------HHHHH
Confidence 45667777777777777655553 46677788877677788888888888777764321 1 12233
Q ss_pred HHhhccCCHHHHHHHHHHHHHHhcC
Q psy14164 232 LRCIQSKKEKLVIKSCFLIACLCTD 256 (361)
Q Consensus 232 v~lL~s~~~~v~~kA~~ll~~L~~~ 256 (361)
-.+.+++..-||+-|+-+++-+...
T Consensus 630 epl~~D~~~fVRQgAlIa~amIm~Q 654 (929)
T KOG2062|consen 630 EPLTSDPVDFVRQGALIALAMIMIQ 654 (929)
T ss_pred hhhhcChHHHHHHHHHHHHHHHHHh
Confidence 3344455667777777776655543
No 225
>KOG1566|consensus
Probab=88.96 E-value=23 Score=34.28 Aligned_cols=146 Identities=13% Similarity=0.161 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhhCc----HHHHHHhhccCCHHHHHHHHHHHHHHhcCCc---hHHHHHHhCCcHH
Q psy14164 199 TVQVKSLYAVSCLVRENEECLKEFIKRDG----FSVLLRCIQSKKEKLVIKSCFLIACLCTDNN---QVKQVLLSMGMVE 271 (361)
Q Consensus 199 ~v~~~Al~ALS~l~r~~~~~~~~f~~~gg----i~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~---~~~~~l~~~g~i~ 271 (361)
.+...|......+.+.+.....+|+..+- .+.--.+|.+.+.-+++.+.-++..+..+.+ ....++.+..-+.
T Consensus 181 diasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLK 260 (342)
T KOG1566|consen 181 DIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLK 260 (342)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHH
Confidence 46667777777777777777788887664 3345668889999999999999999887533 3345666667789
Q ss_pred HHHHhccCCCCCChhHHHHHHHHHHHHHhcC--hHHHHhhccC-cchHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHh
Q psy14164 272 QMCVLIDIEDALDTEMNEHLLSALASLIKDS--PEAQSLCRLE-PLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEV 347 (361)
Q Consensus 272 ~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~--~~~~~~~~~~-~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~il~~~ 347 (361)
.++.+|+.+ ...+|-.|-...+..+... |+-+..|-.. +-.|.+.+-...-.....+.+.+|-.|..+-+...
T Consensus 261 lmM~llrdk---skniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr~KLl~~l~~f~~d~~~DeqF~dEk~~~i~eI~~l 336 (342)
T KOG1566|consen 261 LMMNLLRDK---SKNIQLEAFHVFKVFVANPNKPQPVRDILVRNRPKLLELLHDFHTDRTEDEQFLDEKAYLIKEIRQL 336 (342)
T ss_pred HHHHHhhCc---cccchHHHHHHHHHHhcCCCCCchHHHHHHhCcHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHhc
Confidence 999999988 8889989999888877644 3445444222 21333333333222223557777777766655543
No 226
>KOG4535|consensus
Probab=88.90 E-value=1.5 Score=44.57 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=64.3
Q ss_pred cCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhc----CChh---hHHHHH
Q psy14164 151 EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR----ENEE---CLKEFI 223 (361)
Q Consensus 151 ~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r----~~~~---~~~~f~ 223 (361)
.|.+.-++..|.+.++-.+=+...-++...-..+...++..|.+ +.-.+|.|++|++|||.. +.|. +...|+
T Consensus 401 d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d-~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s 479 (728)
T KOG4535|consen 401 DSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLED-KSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS 479 (728)
T ss_pred chHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhh-HhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH
Confidence 45566688888888887775544444444444556666666653 457899999999999864 3333 233333
Q ss_pred hhCcHHHHHHh-hc--cCCHHHHHHHHHHHHHHhc
Q psy14164 224 KRDGFSVLLRC-IQ--SKKEKLVIKSCFLIACLCT 255 (361)
Q Consensus 224 ~~ggi~~Lv~l-L~--s~~~~v~~kA~~ll~~L~~ 255 (361)
.. -+..+... .. -...||+.+|..++.++..
T Consensus 480 g~-ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ 513 (728)
T KOG4535|consen 480 GL-LLLKMLRSAIEASADKDKVKSNAVRALGNLLQ 513 (728)
T ss_pred HH-HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence 11 11222222 11 2368999999999999875
No 227
>KOG2933|consensus
Probab=88.53 E-value=4.6 Score=38.88 Aligned_cols=141 Identities=16% Similarity=0.147 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcc--cHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHH
Q psy14164 98 AELEKIIKTLKENQDQKDICIGALDNLSDYICSID--YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQN-NPF 174 (361)
Q Consensus 98 ~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~id--na~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn-n~~ 174 (361)
..+++++..|.+. +=+.++++|.-+..|.+-.- ....|++ .+..+++-+++....|-..|+.+++.+.++ |..
T Consensus 88 ~al~~~l~~L~s~--dW~~~vdgLn~irrLs~fh~e~l~~~L~~--vii~vvkslKNlRS~VsraA~~t~~difs~ln~~ 163 (334)
T KOG2933|consen 88 AALKQALKKLSSD--DWEDKVDGLNSIRRLSEFHPESLNPMLHE--VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS 163 (334)
T ss_pred HHHHHHHHHhchH--HHHHHhhhHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777663 33778888888887765332 1233443 477778888999999999999999999986 333
Q ss_pred HHHHHHhcChHHHHHHhhcc---CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHH
Q psy14164 175 SQNFIIQTDFLNLLLTSIEH---DSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIA 251 (361)
Q Consensus 175 ~q~~v~~~g~l~~Ll~LL~~---~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~ 251 (361)
+++ .+..++..|.+ ..+.-|+..|--||=.|+.+-.++ -.++.|+.+++....+++.+++.+..
T Consensus 164 i~~------~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~ 230 (334)
T KOG2933|consen 164 IDQ------ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFS 230 (334)
T ss_pred HHH------HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhcccc
Confidence 333 33444443332 234578999999999999865544 23556777788889999999998777
Q ss_pred HHhc
Q psy14164 252 CLCT 255 (361)
Q Consensus 252 ~L~~ 255 (361)
+...
T Consensus 231 ~~v~ 234 (334)
T KOG2933|consen 231 RCVI 234 (334)
T ss_pred ccce
Confidence 6554
No 228
>KOG1020|consensus
Probab=88.44 E-value=24 Score=40.78 Aligned_cols=172 Identities=14% Similarity=0.153 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhc
Q psy14164 157 LRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQ 236 (361)
Q Consensus 157 vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~ 236 (361)
-...|.|+.-.++++.|..|.. -+.+..++..|.+ +...+|.+|+-+||.|+.-.|... .....-..+..=+.
T Consensus 793 d~~~a~li~~~la~~r~f~~sf---D~yLk~Il~~l~e-~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~ 865 (1692)
T KOG1020|consen 793 DDDDAKLIVFYLAHARSFSQSF---DPYLKLILSVLGE-NAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLN 865 (1692)
T ss_pred cchhHHHHHHHHHhhhHHHHhh---HHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhc
Confidence 4566778888888888776653 3578888999985 677999999999999987544321 11111122233355
Q ss_pred cCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchH
Q psy14164 237 SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNL 316 (361)
Q Consensus 237 s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l 316 (361)
+....||..|+-+++..+-..++...... ..+.+-+..+ ..-+|.+++..+.-+....|+... +
T Consensus 866 DssasVREAaldLvGrfvl~~~e~~~qyY-----~~i~erIlDt---gvsVRKRvIKIlrdic~e~pdf~~--------i 929 (1692)
T KOG1020|consen 866 DSSASVREAALDLVGRFVLSIPELIFQYY-----DQIIERILDT---GVSVRKRVIKILRDICEETPDFSK--------I 929 (1692)
T ss_pred cchhHHHHHHHHHHhhhhhccHHHHHHHH-----HHHHhhcCCC---chhHHHHHHHHHHHHHHhCCChhh--------H
Confidence 67889999999999977776665554432 3455555556 789999999999999888775321 1
Q ss_pred HHHHHHHHHhhcChhhhHHHHHHHH-HHHHHhcCCCCC
Q psy14164 317 KFKLNFIKEKHAGNEVYHKELEYVN-SVLTEVFEEDSP 353 (361)
Q Consensus 317 ~~~Le~~~~~l~~~~e~~~e~~~~~-~il~~~f~~~~~ 353 (361)
.+.+-+.++.....| ..+.+.+. .+.+.||....+
T Consensus 930 ~~~cakmlrRv~DEE--g~I~kLv~etf~klWF~p~~~ 965 (1692)
T KOG1020|consen 930 VDMCAKMLRRVNDEE--GNIKKLVRETFLKLWFTPVPE 965 (1692)
T ss_pred HHHHHHHHHHhccch--hHHHHHHHHHHHHHhccCCCc
Confidence 233334444443221 12445444 445567776554
No 229
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=87.99 E-value=1.9 Score=35.01 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHH
Q psy14164 113 QKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWR 160 (361)
Q Consensus 113 ~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~ 160 (361)
|+-+.-..+..|..+....+.=-.|+++|+++.|+.||.|++.+|...
T Consensus 59 SE~dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 59 SEVDLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred hHHHHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 345566777778888877777788999999999999999999887643
No 230
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=87.70 E-value=7.5 Score=31.46 Aligned_cols=93 Identities=14% Similarity=0.203 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCC
Q psy14164 202 VKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE 280 (361)
Q Consensus 202 ~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~ 280 (361)
...+..|+-+++.++.... ..+..|..-|.+++.+++.+|..++-+++.+ ++.+...+.+..++..++.+...+
T Consensus 18 ~~~i~~i~d~~~~~~~~~~-----~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~ 92 (115)
T cd00197 18 WPLIMEICDLINETNVGPK-----EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSK 92 (115)
T ss_pred HHHHHHHHHHHHCCCccHH-----HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccc
Confidence 4455566666665433322 2455677777888999999999999999987 567788888888887776642221
Q ss_pred ---CCCChhHHHHHHHHHHHHH
Q psy14164 281 ---DALDTEMNEHLLSALASLI 299 (361)
Q Consensus 281 ---~~~d~~~~e~al~aL~~L~ 299 (361)
...+..+|++++..+...+
T Consensus 93 ~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 93 LLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred cccCCCChHHHHHHHHHHHHHh
Confidence 1236789999988876543
No 231
>KOG2032|consensus
Probab=87.56 E-value=9.6 Score=38.95 Aligned_cols=118 Identities=15% Similarity=0.139 Sum_probs=76.2
Q ss_pred HHHHHCCCHHHHHHhh----cCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhc--ChHHHHHHhhccCCCHHHHHHHHHHH
Q psy14164 135 NDFLKMGGLPVLQPLL----EGSDPELRWRAAETVADIVQNNPFSQNFIIQT--DFLNLLLTSIEHDSNTTVQVKSLYAV 208 (361)
Q Consensus 135 ~~~~~~Gg~~~Lv~LL----~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~--g~l~~Ll~LL~~~~~~~v~~~Al~AL 208 (361)
..+-+.|.+.-++..| .+|+..+|..|++.|||.+..-|. .+..+ -.+..++.-|.++.+..|.-.++.+|
T Consensus 248 ~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~---kv~th~~~~ldaii~gL~D~~~~~V~leam~~L 324 (533)
T KOG2032|consen 248 KELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPD---KVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCL 324 (533)
T ss_pred ccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcH---HHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 3344667666665544 358889999999999999998443 23322 24555666555556678887777777
Q ss_pred HHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhc
Q psy14164 209 SCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT 255 (361)
Q Consensus 209 S~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~ 255 (361)
..+.-.-..-.-.++-.+..-.+..++.+.+.++|..|-+++..|+.
T Consensus 325 t~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 325 TMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAK 371 (533)
T ss_pred HHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence 77654211111112222333456677788899999999999888874
No 232
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=87.45 E-value=10 Score=36.63 Aligned_cols=134 Identities=13% Similarity=0.143 Sum_probs=95.2
Q ss_pred HHHHHHhcChHHHHHHhhcc------CC----------------CHHHHHHHHHHHHHHhcCChhhH-------------
Q psy14164 175 SQNFIIQTDFLNLLLTSIEH------DS----------------NTTVQVKSLYAVSCLVRENEECL------------- 219 (361)
Q Consensus 175 ~q~~v~~~g~l~~Ll~LL~~------~~----------------~~~v~~~Al~ALS~l~r~~~~~~------------- 219 (361)
+|..+.+.|.+|.|-++++. .+ +..+|..-+..|.++|.++....
T Consensus 1 vq~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~ 80 (303)
T PF12463_consen 1 VQTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVES 80 (303)
T ss_pred ChHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccc
Confidence 47788899999999888742 11 12478888888888887432211
Q ss_pred ------HHHH--hhCcHHHHHHhhcc--CCHHHHHHHHHHHHHHhcCCc--hHHHHHHhCCcHHHHHHhccCCCCCChhH
Q psy14164 220 ------KEFI--KRDGFSVLLRCIQS--KKEKLVIKSCFLIACLCTDNN--QVKQVLLSMGMVEQMCVLIDIEDALDTEM 287 (361)
Q Consensus 220 ------~~f~--~~ggi~~Lv~lL~s--~~~~v~~kA~~ll~~L~~~~~--~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~ 287 (361)
.... +.|-+..+++.+.. .+...|..-+.+|-+++++.+ ..+..+.+.|+++.++.-+-++...+..+
T Consensus 81 ~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v 160 (303)
T PF12463_consen 81 ELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEV 160 (303)
T ss_pred cccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHH
Confidence 0010 13445566666654 378889999999999999844 45668889999999998887652224568
Q ss_pred HHHHHHHHHHHHhcChHHHHh
Q psy14164 288 NEHLLSALASLIKDSPEAQSL 308 (361)
Q Consensus 288 ~e~al~aL~~L~~~~~~~~~~ 308 (361)
.......|+.|.+.++.....
T Consensus 161 ~Q~~FDLLGELiK~n~~~f~~ 181 (303)
T PF12463_consen 161 LQSNFDLLGELIKFNRDAFQR 181 (303)
T ss_pred HHHHHHHHHHHHCCCHHHHHH
Confidence 888999999999999876554
No 233
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=87.30 E-value=4.2 Score=34.43 Aligned_cols=94 Identities=13% Similarity=0.216 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCC
Q psy14164 202 VKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE 280 (361)
Q Consensus 202 ~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~ 280 (361)
...+.-|+-+++..+..... .+..|..=|.++++.++..|..++-.++.+ ++.+...+.+..++..|..++.+.
T Consensus 23 w~~~l~icD~i~~~~~~~ke-----a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~ 97 (140)
T PF00790_consen 23 WSLILEICDLINSSPDGAKE-----AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSK 97 (140)
T ss_dssp HHHHHHHHHHHHTSTTHHHH-----HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCccHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccC
Confidence 45666778888776444332 356778888899999999999999999987 478888888889999999998865
Q ss_pred CCCChh---HHHHHHHHHHHHHhcC
Q psy14164 281 DALDTE---MNEHLLSALASLIKDS 302 (361)
Q Consensus 281 ~~~d~~---~~e~al~aL~~L~~~~ 302 (361)
. ... ++++++..|.......
T Consensus 98 ~--~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 98 K--TDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp T--THHHSHHHHHHHHHHHHHHHHT
T ss_pred C--CCchhHHHHHHHHHHHHHHHHH
Confidence 1 223 8999999887777544
No 234
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=87.12 E-value=6.2 Score=41.09 Aligned_cols=131 Identities=12% Similarity=0.150 Sum_probs=91.2
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhh
Q psy14164 146 LQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKR 225 (361)
Q Consensus 146 Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ 225 (361)
+-.+|.+.++-+|-..+..++.+--+. -..|++..|+..--++.+..||+.|+-||+-+|...+.
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~GT-------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~-------- 585 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVGT-------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD-------- 585 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhcC-------CcchhHhhhheeecccCchHHHHHHHHheeeeEecCcc--------
Confidence 445778888888888887777543221 12467888888855567789999999999988765443
Q ss_pred CcHHHHHHhhc-cCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164 226 DGFSVLLRCIQ-SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 226 ggi~~Lv~lL~-s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
.+...+++|. +.++-||--.++++.-.|.+.-... .+..|-.|...+ ..-+|..|+-++..|+..|
T Consensus 586 -~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~---~dfVRQ~AmIa~~mIl~Q~ 652 (926)
T COG5116 586 -LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDT---NDFVRQSAMIAVGMILMQC 652 (926)
T ss_pred -hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCc---HHHHHHHHHHHHHHHHhhc
Confidence 3444566665 4589999999999987776632211 234444555555 6778889999999888665
No 235
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=87.03 E-value=6.5 Score=34.18 Aligned_cols=142 Identities=14% Similarity=0.142 Sum_probs=81.4
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy14164 143 LPVLQPLLEG-SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKE 221 (361)
Q Consensus 143 ~~~Lv~LL~s-~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~ 221 (361)
++.|+++|+. .+..+|..+.++||.+=.=+|...+.+....- ..-..+......... -+..+..+..++
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-----~~~~~~~~~~~~~~~-----l~~~~~~~~~ee 81 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD-----SKSSENSNDESTDIS-----LPMMGISPSSEE 81 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC-----ccccccccccchhhH-----HhhccCCCchHH
Confidence 4566677765 46899999999999998878865553322111 000000010111111 122233335567
Q ss_pred HHhhCcHHHHHHhhccCC-HHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164 222 FIKRDGFSVLLRCIQSKK-EKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 299 (361)
Q Consensus 222 f~~~ggi~~Lv~lL~s~~-~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~ 299 (361)
|+-...+..|++.|+++. ..-...+..+|.++... +.....++- -+++.+++.+++. +...+|..+.-|..|+
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~~~---~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIRTC---PDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHHhC---CHHHHHHHHHHHHHHH
Confidence 777778888888888763 33333455566666533 222233332 3678888888866 5678887777766655
No 236
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=86.64 E-value=8.8 Score=40.14 Aligned_cols=108 Identities=12% Similarity=0.225 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhc--cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHH
Q psy14164 154 DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE--HDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVL 231 (361)
Q Consensus 154 ~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~--~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~L 231 (361)
+..-+..++++|||+-. |. .++.|...+. ...+..+|..|+|||..++..++.....+ |
T Consensus 459 ~~~~~~~~LkaLGN~g~--~~---------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~--------l 519 (574)
T smart00638 459 DEEEIQLYLKALGNAGH--PS---------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEV--------L 519 (574)
T ss_pred CchheeeHHHhhhccCC--hh---------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHH--------H
Confidence 44445566666666542 21 3445555554 22456899999999999987666544433 3
Q ss_pred HHhhcc--CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHH
Q psy14164 232 LRCIQS--KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLL 292 (361)
Q Consensus 232 v~lL~s--~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al 292 (361)
..++.. .+..+|..|..++-. .+|. ...+..++..+..+ .+.++.-.+.
T Consensus 520 ~~i~~n~~e~~EvRiaA~~~lm~---t~P~-------~~~l~~ia~~l~~E--~~~QV~sfv~ 570 (574)
T smart00638 520 LPIYLNRAEPPEVRMAAVLVLME---TKPS-------VALLQRIAELLNKE--PNLQVASFVY 570 (574)
T ss_pred HHHHcCCCCChHHHHHHHHHHHh---cCCC-------HHHHHHHHHHHhhc--CcHHHHHHhH
Confidence 555544 377888887766543 3343 23566777777664 2445544433
No 237
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=86.54 E-value=7.8 Score=33.79 Aligned_cols=115 Identities=11% Similarity=0.205 Sum_probs=80.9
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCc--HHHHHHhhccC-CHHHHHHHHHHHHHHhc---CC
Q psy14164 184 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDG--FSVLLRCIQSK-KEKLVIKSCFLIACLCT---DN 257 (361)
Q Consensus 184 ~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~gg--i~~Lv~lL~s~-~~~v~~kA~~ll~~L~~---~~ 257 (361)
....+.++|.+ ++..-|..++.-+..++..++ .+.|.++++ +..|+..|+++ +..++.-++.++..|.. +.
T Consensus 26 l~~ri~~LL~s-~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 26 LVTRINSLLQS-KSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHhCC-CChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 55667888886 566888899999999888654 345655543 46778888875 57788888888887774 35
Q ss_pred chHHHHHHhC---CcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHH
Q psy14164 258 NQVKQVLLSM---GMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQ 306 (361)
Q Consensus 258 ~~~~~~l~~~---g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~ 306 (361)
|+..+.+.-- +++..++.+++. ....+.++.+|..++..+|...
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~-----~~~~~~~l~~L~~ll~~~ptt~ 149 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD-----SSCPETALDALATLLPHHPTTF 149 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHCCccc
Confidence 6655554433 345556665552 4678899999999999888644
No 238
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=86.50 E-value=26 Score=34.82 Aligned_cols=142 Identities=13% Similarity=0.098 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCH-HHHHHhhc------CCCHHHHHHHHHHHHH
Q psy14164 95 NVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGL-PVLQPLLE------GSDPELRWRAAETVAD 167 (361)
Q Consensus 95 ~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~-~~Lv~LL~------s~~~~vr~~Aa~~Lg~ 167 (361)
|+.+.+++-+ +.++....+.+|.+-|..+++.-. ..+.. .+ ..+-.+|+ +.+..-+..|+.+++.
T Consensus 210 dP~EYIrrd~----e~sd~~TrR~AA~dfl~~L~~~~~--~~v~~--i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a 281 (370)
T PF08506_consen 210 DPEEYIRRDL----EGSDSDTRRRAACDFLRSLCKKFE--KQVTS--ILMQYIQQLLQQYASNPSNNWRSKDGALYLIGA 281 (370)
T ss_dssp SHHHHHHHHS----CSS---SHHHHHHHHHHHHHHHHH--HHHHH--HHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHhhc----cccccCCcHHHHHHHHHHHHHHHh--HHHHH--HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence 5566666643 224445677888888888875322 11111 11 22333444 3556788899999999
Q ss_pred HhhcCHHH------------HHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhh
Q psy14164 168 IVQNNPFS------------QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCI 235 (361)
Q Consensus 168 iaqnn~~~------------q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL 235 (361)
++...... =..+...-++|-|- -.....+-+|..|++.++..-..-+.. .+ .+.++.++.+|
T Consensus 282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l~~~--~l--~~~~~~l~~~L 355 (370)
T PF08506_consen 282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQLPKE--QL--LQIFPLLVNHL 355 (370)
T ss_dssp HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-HH--HH--HHHHHHHHHHT
T ss_pred HHhhhccccCCcccccccccHHHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhCCHH--HH--HHHHHHHHHHh
Confidence 98654321 12334444556554 122345689999999999876544432 22 35899999999
Q ss_pred ccCCHHHHHHHHHHH
Q psy14164 236 QSKKEKLVIKSCFLI 250 (361)
Q Consensus 236 ~s~~~~v~~kA~~ll 250 (361)
.+++.-|..-||.+|
T Consensus 356 ~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 356 QSSSYVVHTYAAIAI 370 (370)
T ss_dssp TSS-HHHHHHHHHHH
T ss_pred CCCCcchhhhhhhhC
Confidence 999999999999875
No 239
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=86.46 E-value=3.9 Score=43.43 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=78.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHh------cChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCC-
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQ------TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVREN- 215 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~------~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~- 215 (361)
+..++.||.+++-.+|..-..+.||++..-..--+ +++ ...+..|..-|. +..+-+|.||+..+++|+--+
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~q-m~e~~~~~~~~Lv~ll~ERl~-D~~py~RtKalqv~~kifdl~s 378 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQ-MVEHYKQKLNDLVGLLVERLS-DTYPYTRTKALQVLEKIFDLNS 378 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchh-hHhhHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHhCcc
Confidence 56778899999999999999999999864211111 111 123344444444 467899999999999998542
Q ss_pred --hhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc
Q psy14164 216 --EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN 258 (361)
Q Consensus 216 --~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~ 258 (361)
+.....| +...++.|++.+.-||++|..+++-|+..+|
T Consensus 379 k~~~~r~ev-----~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 379 KTVGRRHEV-----IRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred cccchHHHH-----HHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 2233333 4577889999999999999999999987665
No 240
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=86.31 E-value=25 Score=36.95 Aligned_cols=107 Identities=13% Similarity=0.120 Sum_probs=72.4
Q ss_pred HHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcC
Q psy14164 135 NDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRE 214 (361)
Q Consensus 135 ~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~ 214 (361)
.+|+. |-+..+++-+.+++..||.+++.+|+-++.+--+. +..+-.|.+..|.+-+-. ..+.||..|+.+|+..-..
T Consensus 86 ~~~V~-~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~D-RE~~VR~eAv~~L~~~Qe~ 162 (885)
T COG5218 86 EELVA-GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFD-REKAVRREAVKVLCYYQEM 162 (885)
T ss_pred hHHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHhc
Confidence 45553 56778888889999999999999999988553333 345556777777765543 3569999999999986432
Q ss_pred ChhhHHHHHhhCcHHHHHHhhccC-CHHHHHHHHHH
Q psy14164 215 NEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFL 249 (361)
Q Consensus 215 ~~~~~~~f~~~ggi~~Lv~lL~s~-~~~v~~kA~~l 249 (361)
...-+-++ ...|+.+++.+ +..||+-|..-
T Consensus 163 -~~neen~~----~n~l~~~vqnDPS~EVRr~alln 193 (885)
T COG5218 163 -ELNEENRI----VNLLKDIVQNDPSDEVRRLALLN 193 (885)
T ss_pred -cCChHHHH----HHHHHHHHhcCcHHHHHHHHHHH
Confidence 11222232 23666677654 67777766543
No 241
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=86.03 E-value=10 Score=35.42 Aligned_cols=178 Identities=21% Similarity=0.203 Sum_probs=104.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcC-h-HHHHHHhhcc---CCCHHHHHHHHHHHHHHhcCChh
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD-F-LNLLLTSIEH---DSNTTVQVKSLYAVSCLVRENEE 217 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g-~-l~~Ll~LL~~---~~~~~v~~~Al~ALS~l~r~~~~ 217 (361)
...++..+.+=..+-+-++..++.-++-+ |..-..+...+ . ...+..++.. ...+..+.-++..++|+..+ +.
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~-~~ 142 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH-PP 142 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS-CC
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC-Cc
Confidence 45556666665556688899999877764 44444443332 2 3344444432 24678889999999999885 44
Q ss_pred hHHHHHhhCc--HHHHHHhhccC----CHHHHHHHHHHHHHHhcCCchHH-HHHHhCCcHHHHHHhccCCCCCChhHHHH
Q psy14164 218 CLKEFIKRDG--FSVLLRCIQSK----KEKLVIKSCFLIACLCTDNNQVK-QVLLSMGMVEQMCVLIDIEDALDTEMNEH 290 (361)
Q Consensus 218 ~~~~f~~~gg--i~~Lv~lL~s~----~~~v~~kA~~ll~~L~~~~~~~~-~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~ 290 (361)
....+..+.. +-..+..+.+. +..+|.-++.++.|++......+ ..=....++..+++.+... ..|.+..-.
T Consensus 143 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~-~~d~Ea~~R 221 (268)
T PF08324_consen 143 GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSRE-ESDEEALYR 221 (268)
T ss_dssp CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCC-HTSHHHHHH
T ss_pred cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccc-cCCHHHHHH
Confidence 5566665433 33333333333 68899999999999874210000 0000012345555533221 238888889
Q ss_pred HHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHH
Q psy14164 291 LLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKE 325 (361)
Q Consensus 291 al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~ 325 (361)
++-||++++...+.....+.. +++..++.....
T Consensus 222 ~LvAlGtL~~~~~~~~~~~~~--l~~~~~~~~~~~ 254 (268)
T PF08324_consen 222 LLVALGTLLSSSDSAKQLAKS--LDVKSVLSKKAN 254 (268)
T ss_dssp HHHHHHHHHCCSHHHHHHCCC--CTHHHHHHHHHH
T ss_pred HHHHHHHHhccChhHHHHHHH--cChHHHHHHHHh
Confidence 999999999777776766644 344555554433
No 242
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=85.75 E-value=31 Score=32.33 Aligned_cols=99 Identities=11% Similarity=0.121 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCH-------HHHHHHHHHHHHHhcCChhhHHHHHhh
Q psy14164 153 SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNT-------TVQVKSLYAVSCLVRENEECLKEFIKR 225 (361)
Q Consensus 153 ~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~-------~v~~~Al~ALS~l~r~~~~~~~~f~~~ 225 (361)
++......|+.+|+.. -+.-++|+|+++++.+.+. .+-...-..+.+++ .
T Consensus 54 ~~~~~~~~a~~LLaq~-----------re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~ 110 (249)
T PF06685_consen 54 EEYNLHFYALYLLAQF-----------REERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------D 110 (249)
T ss_pred cchHHHHHHHHHHHHH-----------hhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------C
Confidence 3344455666666643 3456899999999864321 11122222233333 3
Q ss_pred CcHHHHHHhhccC--CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHh
Q psy14164 226 DGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVL 276 (361)
Q Consensus 226 ggi~~Lv~lL~s~--~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~l 276 (361)
|-++.|.+++.++ +.-+|..|..++..++..++..|..+++ ++..+...
T Consensus 111 G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~--~f~~ll~~ 161 (249)
T PF06685_consen 111 GDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQ--YFRELLNY 161 (249)
T ss_pred CCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH--HHHHHHHH
Confidence 4456666666655 5677888999999999998888888763 44444443
No 243
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=85.60 E-value=8.8 Score=31.38 Aligned_cols=68 Identities=24% Similarity=0.370 Sum_probs=46.6
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCC
Q psy14164 143 LPVLQPLLE-GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVREN 215 (361)
Q Consensus 143 ~~~Lv~LL~-s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~ 215 (361)
+|.+...|. +..++.|..+..+++.++..-+-..+.+ + ..+..+++-... ....+.++-+|..++.+.
T Consensus 8 LP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l-~-~l~~~i~~~~~~---~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 8 LPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVL-N-ALMESILKNWTQ---ETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHH-H-HHHHHHHhcccc---chhHHHHHHHHHHHHHcc
Confidence 688888888 7889999999999999998766444322 1 133333333332 122578999999998754
No 244
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=85.15 E-value=23 Score=31.43 Aligned_cols=144 Identities=19% Similarity=0.239 Sum_probs=85.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHH
Q psy14164 100 LEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI 179 (361)
Q Consensus 100 mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v 179 (361)
++.+++.... .+...+..|++-+.-.+.+ ...+ +.-.+|.|+.|..++++.+|..|...+..+.+..+..=..=
T Consensus 10 l~~Il~~~~~--~~~~vr~~Al~~l~~il~q-GLvn---P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 10 LKNILELCLS--SDDSVRLAALQVLELILRQ-GLVN---PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHHHHhc-CCCC---hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444443333 3457788888888777653 2222 23368999999999999999999999999998877643332
Q ss_pred HhcChHHHHHH---hhccCCCHHH---HHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC--------CHHHHHH
Q psy14164 180 IQTDFLNLLLT---SIEHDSNTTV---QVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK--------KEKLVIK 245 (361)
Q Consensus 180 ~~~g~l~~Ll~---LL~~~~~~~v---~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~--------~~~v~~k 245 (361)
+-.| +..-.. -+..+..... ...-+..+-.+++++......|+. .|++.+... ...-...
T Consensus 84 ~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~-----~l~k~f~~~~~~~~~~~~~~~l~~ 157 (187)
T PF12830_consen 84 YSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLK-----SLLKQFDFDLTKLSSESSPSDLDF 157 (187)
T ss_pred HHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHH-----HHHHHHHhhccccccccchhHHHH
Confidence 2223 322222 1222211111 455666666788888888888862 333333321 2333455
Q ss_pred HHHHHHHHhc
Q psy14164 246 SCFLIACLCT 255 (361)
Q Consensus 246 A~~ll~~L~~ 255 (361)
..|+..+|+.
T Consensus 158 ~~Fla~nLA~ 167 (187)
T PF12830_consen 158 LLFLAENLAT 167 (187)
T ss_pred HHHHHHHHhc
Confidence 6666666664
No 245
>KOG2062|consensus
Probab=85.07 E-value=9.5 Score=40.87 Aligned_cols=136 Identities=18% Similarity=0.226 Sum_probs=93.1
Q ss_pred HCCCHHHHHH-hhcCCCHHHHHHHHHHHHHH--hhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCC
Q psy14164 139 KMGGLPVLQP-LLEGSDPELRWRAAETVADI--VQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVREN 215 (361)
Q Consensus 139 ~~Gg~~~Lv~-LL~s~~~~vr~~Aa~~Lg~i--aqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~ 215 (361)
..+...+++. ++...++-+|......++-. .++| .+++..|+..--++.+..||+.|+-||+=++-..
T Consensus 516 rqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn---------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 516 RQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN---------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred hhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc---------hhhHHHhhcccccccchHHHHHHHHHheeeEecC
Confidence 3445666666 77888999998877766643 3332 3577888888666788899999999999888766
Q ss_pred hhhHHHHHhhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHH
Q psy14164 216 EECLKEFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSA 294 (361)
Q Consensus 216 ~~~~~~f~~~ggi~~Lv~lL~s-~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~a 294 (361)
|.. .+..+.+|.. -++-||--|+.++.-.|.+. -.+..+ +++++|+ +.+ ..-+|.-|+-+
T Consensus 587 p~~---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGt-G~~eAi---~lLepl~---~D~---~~fVRQgAlIa 647 (929)
T KOG2062|consen 587 PEQ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGT-GLKEAI---NLLEPLT---SDP---VDFVRQGALIA 647 (929)
T ss_pred hhh---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCC-CcHHHH---HHHhhhh---cCh---HHHHHHHHHHH
Confidence 654 3344666654 48999999999999777652 222221 2333333 333 55688888888
Q ss_pred HHHHHhcC
Q psy14164 295 LASLIKDS 302 (361)
Q Consensus 295 L~~L~~~~ 302 (361)
+..|+..+
T Consensus 648 ~amIm~Q~ 655 (929)
T KOG2062|consen 648 LAMIMIQQ 655 (929)
T ss_pred HHHHHHhc
Confidence 88887544
No 246
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=84.77 E-value=16 Score=38.44 Aligned_cols=120 Identities=18% Similarity=0.276 Sum_probs=71.4
Q ss_pred HHHHHHhhc----CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccC--CCHHHHHHHHHHHHHHhcCCh
Q psy14164 143 LPVLQPLLE----GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD--SNTTVQVKSLYAVSCLVRENE 216 (361)
Q Consensus 143 ~~~Lv~LL~----s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~--~~~~v~~~Al~ALS~l~r~~~ 216 (361)
++.|...|. ..+..-+..++++|||+-. | ..++.|..++... .+..+|..|+||+..++..++
T Consensus 488 ~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~ 556 (618)
T PF01347_consen 488 VPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP 556 (618)
T ss_dssp THHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H
T ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc
Confidence 444555444 3556777888888888742 2 3688888888753 357899999999999977776
Q ss_pred hhHHHHHhhCcHHHHHHhhccC--CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHH
Q psy14164 217 ECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLS 293 (361)
Q Consensus 217 ~~~~~f~~~ggi~~Lv~lL~s~--~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~ 293 (361)
..... .|..++... +..+|..|..+|- ..+|.. ..+..+...|... .+.++.-.+..
T Consensus 557 ~~v~~--------~l~~I~~n~~e~~EvRiaA~~~lm---~~~P~~-------~~l~~i~~~l~~E--~~~QV~sfv~S 615 (618)
T PF01347_consen 557 EKVRE--------ILLPIFMNTTEDPEVRIAAYLILM---RCNPSP-------SVLQRIAQSLWNE--PSNQVASFVYS 615 (618)
T ss_dssp HHHHH--------HHHHHHH-TTS-HHHHHHHHHHHH---HT---H-------HHHHHHHHHHTT---S-HHHHHHHHH
T ss_pred HHHHH--------HHHHHhcCCCCChhHHHHHHHHHH---hcCCCH-------HHHHHHHHHHhhC--chHHHHHHHHH
Confidence 54433 346666543 6778887765544 333432 3566777777654 24555444433
No 247
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=84.48 E-value=4.2 Score=36.69 Aligned_cols=116 Identities=13% Similarity=0.187 Sum_probs=49.4
Q ss_pred HHHHHCCCHHHHHHhhcC---CC---------------HHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCC
Q psy14164 135 NDFLKMGGLPVLQPLLEG---SD---------------PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS 196 (361)
Q Consensus 135 ~~~~~~Gg~~~Lv~LL~s---~~---------------~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~ 196 (361)
+-|..+|++..++.+|.. .. ..+-..+.++|...+.+|+.+|..+.+. ++.++..+...
T Consensus 37 ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~- 113 (207)
T PF01365_consen 37 KLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQL- 113 (207)
T ss_dssp HHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCC-
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHh-
Confidence 345666777777776653 11 4677899999999999999999998774 55444444321
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC
Q psy14164 197 NTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD 256 (361)
Q Consensus 197 ~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~ 256 (361)
....-..+..++..+.++|+.....+.+.. +..++.++.... -+.+-.-+++.|+..
T Consensus 114 ~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~g--r~~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 114 QIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKHG--RQPRYLDFLSSLCVC 170 (207)
T ss_dssp CH-TTHHHHHHHHHHHTT------------------------------------------
T ss_pred hccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHcC--CChHHHHHHhhhccc
Confidence 112224578889999999999888887655 888888887632 223344456666553
No 248
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=83.88 E-value=19 Score=33.93 Aligned_cols=143 Identities=20% Similarity=0.219 Sum_probs=84.9
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccC-CCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q psy14164 146 LQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD-SNTTVQVKSLYAVSCLVRENEECLKEFIK 224 (361)
Q Consensus 146 Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~-~~~~v~~~Al~ALS~l~r~~~~~~~~f~~ 224 (361)
|=..|.++++.+|..|..+|+.+...-|... +...-+..|+..+.+. .|......++.++..+++........
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~--- 77 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES--- 77 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh---
Confidence 3357899999999999999999998766321 3333345555544321 23344445577777776533211111
Q ss_pred hCcHHHHHHhhc-----cCCHHHHHHHHHHHHHHhcCCchHHHHHHhC--CcHHHHHHhccCCCCCChhHHHHHHHHHHH
Q psy14164 225 RDGFSVLLRCIQ-----SKKEKLVIKSCFLIACLCTDNNQVKQVLLSM--GMVEQMCVLIDIEDALDTEMNEHLLSALAS 297 (361)
Q Consensus 225 ~ggi~~Lv~lL~-----s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~--g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~ 297 (361)
+...+..+.+ +-....|..+-.++..|+.... ..+.+. +++..++++.... .|+.-.-.+...+..
T Consensus 78 --~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~---~~l~~~~~~fv~~~i~~~~gE--kDPRnLl~~F~l~~~ 150 (262)
T PF14500_consen 78 --AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR---EALQSMGDDFVYGFIQLIDGE--KDPRNLLLSFKLLKV 150 (262)
T ss_pred --HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH---HHHHhchhHHHHHHHHHhccC--CCHHHHHHHHHHHHH
Confidence 2222222222 2356777788888888876532 333333 5678888887754 477777777776666
Q ss_pred HHhc
Q psy14164 298 LIKD 301 (361)
Q Consensus 298 L~~~ 301 (361)
+++.
T Consensus 151 i~~~ 154 (262)
T PF14500_consen 151 ILQE 154 (262)
T ss_pred HHHh
Confidence 6554
No 249
>KOG0414|consensus
Probab=83.82 E-value=6.2 Score=44.13 Aligned_cols=112 Identities=19% Similarity=0.214 Sum_probs=79.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhc---CHHHHHHHHh---cChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCCh
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQN---NPFSQNFIIQ---TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENE 216 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn---n~~~q~~v~~---~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~ 216 (361)
+..|+.+|.+.+-.+|..-..++||++-. ++. ++...+ ...+..|..-+. +.+.-||.+++.-...|++.+.
T Consensus 314 l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e-~~~~sk~~r~~~le~l~erl~-Dvsa~vRskVLqv~~~l~~~~s 391 (1251)
T KOG0414|consen 314 LTLLVDLLDSESYTLRNAVLEICANLVASELRDEE-LEEMSKSLRDELLELLRERLL-DVSAYVRSKVLQVFRRLFQQHS 391 (1251)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchh-hhHHHHHHHHHHHHHHHHHhh-cccHHHHHHHHHHHHHHHHccC
Confidence 55677888899999999999999998753 222 111111 124555555554 3677999999999999998654
Q ss_pred hhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc
Q psy14164 217 ECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN 258 (361)
Q Consensus 217 ~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~ 258 (361)
.....+ ...+...+.-|.+.+.-||++|..+++.+...+|
T Consensus 392 ~p~~~~--~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 392 IPLGSR--TEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred CCccHH--HHHHHHHhcccccccHHHHHHHHHHHHHHHhcCC
Confidence 332222 2345566778888999999999999999998876
No 250
>KOG0567|consensus
Probab=83.76 E-value=40 Score=31.94 Aligned_cols=59 Identities=31% Similarity=0.423 Sum_probs=40.7
Q ss_pred CHHHHHHhh--cCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q psy14164 142 GLPVLQPLL--EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV 212 (361)
Q Consensus 142 g~~~Lv~LL--~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~ 212 (361)
.+++|+..| .+..+-||..|+.++|.+-. .+.++.|-++. +++...|+..+.-||-.+-
T Consensus 68 Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~-~dp~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 68 AVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYI-KDPCKEVRETCELAIKRLE 128 (289)
T ss_pred hhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHh-cCCccccchHHHHHHHHHH
Confidence 588888865 46788999999999998762 23455555666 3455667666666665553
No 251
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=83.46 E-value=13 Score=29.80 Aligned_cols=92 Identities=14% Similarity=0.124 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHH-hcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHh
Q psy14164 156 ELRWRAAETVADIVQNNPFSQNFII-QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRC 234 (361)
Q Consensus 156 ~vr~~Aa~~Lg~iaqnn~~~q~~v~-~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~l 234 (361)
+||.+|+.=|-+=-.++--+...+. ..+.+..|+.-+... +......++.-|+.+++ +|.+...+.+.|+...|-++
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~-~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~kl 79 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFP-PVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKL 79 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCC-CCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHH
Confidence 5777777655544333333333343 456788888888864 44588889999999988 57777888889999987776
Q ss_pred hccCCHHHHHHHHHH
Q psy14164 235 IQSKKEKLVIKSCFL 249 (361)
Q Consensus 235 L~s~~~~v~~kA~~l 249 (361)
-...++..+...-.+
T Consensus 80 r~~~~~~~~~~id~i 94 (98)
T PF14726_consen 80 RPNVEPNLQAEIDEI 94 (98)
T ss_pred HhcCCHHHHHHHHHH
Confidence 655566666555443
No 252
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=83.17 E-value=9.2 Score=31.85 Aligned_cols=79 Identities=10% Similarity=0.079 Sum_probs=51.7
Q ss_pred cHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHH-HhhccCcchHHHHHHHHHH---hhcChhhhHHHHHHHHHHH
Q psy14164 269 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQ-SLCRLEPLNLKFKLNFIKE---KHAGNEVYHKELEYVNSVL 344 (361)
Q Consensus 269 ~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~-~~~~~~~l~l~~~Le~~~~---~l~~~~e~~~e~~~~~~il 344 (361)
++..|.+=|... +.-++-++|..|.+|+...+... ..++. +......+.+... .+.+...++.+++.|..++
T Consensus 39 i~d~L~kRL~~~---~~hVK~K~Lrilk~l~~~G~~~f~~~~~~-~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~ 114 (122)
T cd03572 39 LLEYLLKRLKRS---SPHVKLKVLKIIKHLCEKGNSDFKRELQR-NSAQIRECANYKGPPDPLKGDSLNEKVREEAQELI 114 (122)
T ss_pred HHHHHHHHhcCC---CCcchHHHHHHHHHHHhhCCHHHHHHHHH-hHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence 466777778877 78888999999999998775433 33322 2111112222222 2234557788899999999
Q ss_pred HHhcCCC
Q psy14164 345 TEVFEED 351 (361)
Q Consensus 345 ~~~f~~~ 351 (361)
+..|+.+
T Consensus 115 ~~if~~~ 121 (122)
T cd03572 115 KAIFSYS 121 (122)
T ss_pred HHHhccC
Confidence 9999865
No 253
>KOG3665|consensus
Probab=83.13 E-value=56 Score=35.35 Aligned_cols=95 Identities=26% Similarity=0.326 Sum_probs=66.6
Q ss_pred HHHHHhcCChhhHHHHHhhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCc--hHHHHHHhCCcHHHHHHhccCCCCC
Q psy14164 207 AVSCLVRENEECLKEFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNN--QVKQVLLSMGMVEQMCVLIDIEDAL 283 (361)
Q Consensus 207 ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s-~~~~v~~kA~~ll~~L~~~~~--~~~~~l~~~g~i~~Lv~lL~~~~~~ 283 (361)
+|.+++-.++..-..|++.||...+..++.. +...++.++...+.+++...+ +.........+ ..+..++... .
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~-~~f~~~~~~w--~ 570 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDF-SVFKVLLNKW--D 570 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHhhc--c
Confidence 5667888889999999999999999999986 478999999999999987532 12221111111 1233344444 0
Q ss_pred ChhHHHHHHHHHHHHHhcChH
Q psy14164 284 DTEMNEHLLSALASLIKDSPE 304 (361)
Q Consensus 284 d~~~~e~al~aL~~L~~~~~~ 304 (361)
+.+.--.+...|..++.+++.
T Consensus 571 ~~ersY~~~siLa~ll~~~~~ 591 (699)
T KOG3665|consen 571 SIERSYNAASILALLLSDSEK 591 (699)
T ss_pred hhhHHHHHHHHHHHHHhCCCc
Confidence 336677888888888887765
No 254
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=82.64 E-value=5.4 Score=31.45 Aligned_cols=71 Identities=14% Similarity=0.162 Sum_probs=55.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChH
Q psy14164 229 SVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPE 304 (361)
Q Consensus 229 ~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~ 304 (361)
...+.-|.++..-+|..+...++.|+.... .....-.+++..+...|+.+ |+-+--.|..+|..|+...|.
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~---DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE---DSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC---CchHHHHHHHHHHHHHHHChH
Confidence 345566788888899999999999998754 12222245677788889888 999999999999999988876
No 255
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=82.47 E-value=26 Score=33.28 Aligned_cols=72 Identities=14% Similarity=0.326 Sum_probs=48.6
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHH-HHHHhcChHHHHHH----hhc---c----CCCHHHHHHHHHHHH
Q psy14164 142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ-NFIIQTDFLNLLLT----SIE---H----DSNTTVQVKSLYAVS 209 (361)
Q Consensus 142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q-~~v~~~g~l~~Ll~----LL~---~----~~~~~v~~~Al~ALS 209 (361)
.+|+++.++.+.++.+|..++.+|..+..+-+... ..+...|..+.+-. +|. . +.+..+-..|.-||-
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 38899999999999999999999999998776544 33556665544333 332 1 123345566666666
Q ss_pred HHhc
Q psy14164 210 CLVR 213 (361)
Q Consensus 210 ~l~r 213 (361)
.+++
T Consensus 200 ~L~~ 203 (282)
T PF10521_consen 200 SLLK 203 (282)
T ss_pred HHHH
Confidence 6643
No 256
>PLN03205 ATR interacting protein; Provisional
Probab=82.18 E-value=17 Score=36.33 Aligned_cols=164 Identities=10% Similarity=0.126 Sum_probs=104.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhc---CHHHHHHHHhcChHH---HHHHhhccCCCHHHHHHHHHHHHHHhcCCh
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQN---NPFSQNFIIQTDFLN---LLLTSIEHDSNTTVQVKSLYAVSCLVRENE 216 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn---n~~~q~~v~~~g~l~---~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~ 216 (361)
+++|+.|..-++..+..+++++|-.+.|+ |..--++-.+.+.+. .+.+.....+.+.||..|++..--|++...
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssn 404 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMSTD 404 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhccc
Confidence 56667777778999999999988877653 322222222333333 333333223456788888887766666533
Q ss_pred h--hHHHHHhhCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCCchHHHHHH---------------------hC---Cc
Q psy14164 217 E--CLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQVKQVLL---------------------SM---GM 269 (361)
Q Consensus 217 ~--~~~~f~~~ggi~~Lv~lL~s~-~~~v~~kA~~ll~~L~~~~~~~~~~l~---------------------~~---g~ 269 (361)
+ ..+.|.....++.+-++|+.. ...||+.|..++.-|+. .|.....|- .. .+
T Consensus 405 a~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN-CpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~fSsI 483 (652)
T PLN03205 405 AYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN-CPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAFGKI 483 (652)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc-CcHHHHHHhcCCccccccccccccccccccHHHHHHH
Confidence 2 355676667788888999865 78999999988876653 221111111 01 23
Q ss_pred HHHHHHhccCC--CCCChhHHHHHHHHHHHHHhcChHHHH
Q psy14164 270 VEQMCVLIDIE--DALDTEMNEHLLSALASLIKDSPEAQS 307 (361)
Q Consensus 270 i~~Lv~lL~~~--~~~d~~~~e~al~aL~~L~~~~~~~~~ 307 (361)
+..|.+++... +..|.+++..+.-.|..++..+....+
T Consensus 484 legLAeCiac~~~s~~dIeLck~aiimLAflASSGk~GfE 523 (652)
T PLN03205 484 FEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSGYE 523 (652)
T ss_pred HHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCCce
Confidence 56677777665 345778888998888888887765443
No 257
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=81.79 E-value=15 Score=34.02 Aligned_cols=183 Identities=15% Similarity=0.213 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHhhcCc-ccHHHHHHCCC-HHHHHH-------hhc----CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhc
Q psy14164 116 ICIGALDNLSDYICSI-DYANDFLKMGG-LPVLQP-------LLE----GSDPELRWRAAETVADIVQNNPFSQNFIIQT 182 (361)
Q Consensus 116 ~~~~Al~~L~~lve~i-dna~~~~~~Gg-~~~Lv~-------LL~----s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~ 182 (361)
.|+.||++|..--++. |.|-.+-..-| ...|++ +|+ +....-|...+-.|-.+....|+.+..|+++
T Consensus 61 ~kEqaL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQclaShPetk~~Fl~A 140 (315)
T COG5209 61 PKEQALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLASHPETKKVFLDA 140 (315)
T ss_pred HHHHHHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHhcCcchheeeeec
Confidence 3455777776655543 44443333333 333333 122 1223344444444455566789999999887
Q ss_pred Ch---HHHHHHhhc-cCCCHHHHHHHHHHHHHHhcCChhhHHHH-HhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q psy14164 183 DF---LNLLLTSIE-HDSNTTVQVKSLYAVSCLVRENEECLKEF-IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN 257 (361)
Q Consensus 183 g~---l~~Ll~LL~-~~~~~~v~~~Al~ALS~l~r~~~~~~~~f-~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~ 257 (361)
.. +-+.+...+ +.+-+.+|..++..|++++.+..+-...| .....+|.+.+++..+++--|.-|+|.+.-+...+
T Consensus 141 hiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil~dD 220 (315)
T COG5209 141 HIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILGDD 220 (315)
T ss_pred ccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 53 222333333 33446799999999999999765544444 45678999999999999999999999998887755
Q ss_pred chHH------HHHH-hCCcHHHHHHhc-cCCCCCChhHHHHHHHHHHHHHhc
Q psy14164 258 NQVK------QVLL-SMGMVEQMCVLI-DIEDALDTEMNEHLLSALASLIKD 301 (361)
Q Consensus 258 ~~~~------~~l~-~~g~i~~Lv~lL-~~~~~~d~~~~e~al~aL~~L~~~ 301 (361)
.-.. +.+. -..++..++..+ +.+ ...+..+++++-..+..+
T Consensus 221 vGLqYiCqT~eRFyAv~~vln~mv~qlVs~~---~~RLlKh~iRcYlRLsd~ 269 (315)
T COG5209 221 VGLQYICQTFERFYAVNLVLNSMVSQLVSLG---STRLLKHAIRCYLRLSDK 269 (315)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHheeecCC
Confidence 3211 1111 122344444333 334 677888888887666543
No 258
>KOG1943|consensus
Probab=81.61 E-value=49 Score=37.04 Aligned_cols=141 Identities=13% Similarity=0.158 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChh---hHHHHH--hhC
Q psy14164 152 GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEE---CLKEFI--KRD 226 (361)
Q Consensus 152 s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~---~~~~f~--~~g 226 (361)
|=+..+|+.|+++|..++.-.|+ .+..+.+|+|+....+ .+...|--+.-|.+.++.+... ....+. +..
T Consensus 555 HWd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls-~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~ 629 (1133)
T KOG1943|consen 555 HWDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLS-KDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIA 629 (1133)
T ss_pred cccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcC-CChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhh
Confidence 56899999999999999987775 3455788999887775 4667776666666666543221 111111 112
Q ss_pred cHHHHH-----HhhccC-CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q psy14164 227 GFSVLL-----RCIQSK-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK 300 (361)
Q Consensus 227 gi~~Lv-----~lL~s~-~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~ 300 (361)
|++.++ .-++.+ ....+.-.+.+|..+..+.+.....++..++-..+.+.+..+ + .+|+.+.+++..+..
T Consensus 630 ~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~---n-~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 630 GLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLP---N-QIRDAAVSAVSDLVS 705 (1133)
T ss_pred hhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcch---H-HHHHHHHHHHHHHHH
Confidence 322222 222222 245566667777777777776777777777777777777554 4 888989998888875
Q ss_pred c
Q psy14164 301 D 301 (361)
Q Consensus 301 ~ 301 (361)
.
T Consensus 706 ~ 706 (1133)
T KOG1943|consen 706 T 706 (1133)
T ss_pred H
Confidence 3
No 259
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=81.05 E-value=25 Score=34.76 Aligned_cols=91 Identities=18% Similarity=0.273 Sum_probs=60.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhh-cCCCHHHHHHH-HHHHHHHhhcCHHHHHH
Q psy14164 101 EKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLL-EGSDPELRWRA-AETVADIVQNNPFSQNF 178 (361)
Q Consensus 101 k~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL-~s~~~~vr~~A-a~~Lg~iaqnn~~~q~~ 178 (361)
.-++.-|. +..+...|-.++-.|..-+.+.+....|...|....+++.+ ..++..+-..+ +-++..+.+.. .....
T Consensus 24 ~ylld~l~-~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~-~~~~l 101 (361)
T PF07814_consen 24 EYLLDGLE-SSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDG-LNMHL 101 (361)
T ss_pred HHHHhhcc-cCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCC-cchhh
Confidence 33444444 34455678788888888888888999999999999999988 44444344444 44444444443 33444
Q ss_pred HHhcChHHHHHHhhc
Q psy14164 179 IIQTDFLNLLLTSIE 193 (361)
Q Consensus 179 v~~~g~l~~Ll~LL~ 193 (361)
+.+.+.+..+++|+.
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 456677777788887
No 260
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=80.49 E-value=35 Score=28.98 Aligned_cols=72 Identities=18% Similarity=0.182 Sum_probs=55.5
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHHHhhcC-HHHHHHHHhcChHHH-HHHhhccC--CCHHHHHHHHHHHHHHhcC
Q psy14164 143 LPVLQPLLE-GSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNL-LLTSIEHD--SNTTVQVKSLYAVSCLVRE 214 (361)
Q Consensus 143 ~~~Lv~LL~-s~~~~vr~~Aa~~Lg~iaqnn-~~~q~~v~~~g~l~~-Ll~LL~~~--~~~~v~~~Al~ALS~l~r~ 214 (361)
+..|-+=|. +.++.+...|+.+|-.+++|. +.++..+...+.+.. |++++... .+..|+.+.+..|-.-...
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 455555455 478999999999999999996 467888888899987 99999732 3458899888887776543
No 261
>KOG4653|consensus
Probab=79.65 E-value=23 Score=38.73 Aligned_cols=101 Identities=16% Similarity=0.222 Sum_probs=69.0
Q ss_pred hcCCCHHHHHHHHHHHHHHhhcCHH-HHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcH
Q psy14164 150 LEGSDPELRWRAAETVADIVQNNPF-SQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGF 228 (361)
Q Consensus 150 L~s~~~~vr~~Aa~~Lg~iaqnn~~-~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi 228 (361)
.+.|+...|..++..+|+++|-+.. .++.+.+ ++..++.+...+...-+|+.|+.-|-.+.+|...-.-.|...-.+
T Consensus 856 vrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~ 933 (982)
T KOG4653|consen 856 VREPDHEFRASSLANLGQLCQLLAFQVSDFFHE--VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLI 933 (982)
T ss_pred cCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH--HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 3467778899999999999997764 3454533 677788888887788999999999999999876555555543333
Q ss_pred HHH---HHhhc-cCCHHHHHHHHHHHHH
Q psy14164 229 SVL---LRCIQ-SKKEKLVIKSCFLIAC 252 (361)
Q Consensus 229 ~~L---v~lL~-s~~~~v~~kA~~ll~~ 252 (361)
... ..... .++..++..|+-++-.
T Consensus 934 Dl~~tl~~~vr~~~dd~~klhaql~lee 961 (982)
T KOG4653|consen 934 DLDETLLSYVRQHDDDGLKLHAQLCLEE 961 (982)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 322 22222 2355566666655443
No 262
>KOG0301|consensus
Probab=79.57 E-value=92 Score=33.28 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=84.7
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHH---hcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhh
Q psy14164 149 LLEGSDPELRWRAAETVADIVQNNPFSQNFII---QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKR 225 (361)
Q Consensus 149 LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~---~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ 225 (361)
.|..-+.+++.+|+.+|.-++.+.+..-..+- ....+..++..+. .++..+.-++..|+|+-.+ +...+-|...
T Consensus 552 ~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~--~~~an~ll~vR~L~N~f~~-~~g~~~~~s~ 628 (745)
T KOG0301|consen 552 ILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN--ADPANQLLVVRCLANLFSN-PAGRELFMSR 628 (745)
T ss_pred HHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc--cchhHHHHHHHHHHHhccC-HHHHHHHHHH
Confidence 34445778899999999999987665544333 1235666666666 2457778899999999886 6666666644
Q ss_pred CcHHHHHHhh----ccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCC--CCCChhHHHHHHHHHHHHH
Q psy14164 226 DGFSVLLRCI----QSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE--DALDTEMNEHLLSALASLI 299 (361)
Q Consensus 226 ggi~~Lv~lL----~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~d~~~~e~al~aL~~L~ 299 (361)
+..+...+ ..++..++...+.+.-|+.-. +.+.-.+.+..+.+..++..- +..|.+-.-..+.||.+|+
T Consensus 629 --~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~ 703 (745)
T KOG0301|consen 629 --LESILDPVIEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLM 703 (745)
T ss_pred --HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhc
Confidence 33332222 233456666555554444321 111111134444444443322 1112222334566777777
Q ss_pred hcChHHHHhh
Q psy14164 300 KDSPEAQSLC 309 (361)
Q Consensus 300 ~~~~~~~~~~ 309 (361)
...+.+.+..
T Consensus 704 t~~~~~~~~A 713 (745)
T KOG0301|consen 704 TVDASVIQLA 713 (745)
T ss_pred cccHHHHHHH
Confidence 7766555444
No 263
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=79.30 E-value=26 Score=29.76 Aligned_cols=95 Identities=13% Similarity=0.222 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhc-cCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHH-HHHhcc
Q psy14164 202 VKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQ-SKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQ-MCVLID 278 (361)
Q Consensus 202 ~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~-s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~-Lv~lL~ 278 (361)
...+-.|+-+++..+..- ..++..|..=|. +.+.+++..|..++-.++.+ +..+...+.+.+++.. |+.++.
T Consensus 19 w~~ileicD~In~~~~~~-----k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~ 93 (141)
T cd03565 19 WGLNMEICDIINETEDGP-----KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLIN 93 (141)
T ss_pred HHHHHHHHHHHhCCCCcH-----HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHc
Confidence 344555666665432221 124456666565 46899999999999998887 6788889999999997 999997
Q ss_pred CCCCCChhHHHHHHHHHHHHHhc
Q psy14164 279 IEDALDTEMNEHLLSALASLIKD 301 (361)
Q Consensus 279 ~~~~~d~~~~e~al~aL~~L~~~ 301 (361)
.....+..++.+++..+......
T Consensus 94 ~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 94 PKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred ccCCCcHHHHHHHHHHHHHHHHH
Confidence 43112458899999988877753
No 264
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=79.17 E-value=53 Score=30.26 Aligned_cols=138 Identities=20% Similarity=0.217 Sum_probs=87.3
Q ss_pred HHHHHH-hhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy14164 143 LPVLQP-LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKE 221 (361)
Q Consensus 143 ~~~Lv~-LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~ 221 (361)
++.|+. +-+..++.+....+..|+.++.++..+... ++..|..+... .....+.-+...+..+-..++..+
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~-~~~~~~~~~~rLl~~lw~~~~r~f-- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQ-GSLELRYVALRLLTLLWKANDRHF-- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcC-CchhHHHHHHHHHHHHHHhCchHH--
Confidence 344444 556789999999999999999876122222 34555556654 344445566666676766555433
Q ss_pred HHhhCcHHHHHHh--------hc--cCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhc-cCCCCCChhHHHH
Q psy14164 222 FIKRDGFSVLLRC--------IQ--SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLI-DIEDALDTEMNEH 290 (361)
Q Consensus 222 f~~~ggi~~Lv~l--------L~--s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL-~~~~~~d~~~~e~ 290 (361)
+.+..++.. .. +.........+..+..++...|+ .-..++..+..+| +.. +..++..
T Consensus 74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~---~~~~~al 141 (234)
T PF12530_consen 74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSC---DEVAQAL 141 (234)
T ss_pred ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccc---cHHHHHH
Confidence 222222222 11 12455666667888999988776 1123578888888 666 7788888
Q ss_pred HHHHHHHHHh
Q psy14164 291 LLSALASLIK 300 (361)
Q Consensus 291 al~aL~~L~~ 300 (361)
++.+|..+..
T Consensus 142 ale~l~~Lc~ 151 (234)
T PF12530_consen 142 ALEALAPLCE 151 (234)
T ss_pred HHHHHHHHHH
Confidence 8988888884
No 265
>KOG0567|consensus
Probab=79.16 E-value=59 Score=30.85 Aligned_cols=133 Identities=10% Similarity=0.150 Sum_probs=67.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhh---------
Q psy14164 100 LEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQ--------- 170 (361)
Q Consensus 100 mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaq--------- 170 (361)
|.-.+.+|.+.+...-.++.|-+.|..+-. -...+.+-++.+.+-..|++.+..+|..+-.
T Consensus 69 v~~l~~vl~desq~pmvRhEAaealga~~~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~ 138 (289)
T KOG0567|consen 69 VPVLVEVLLDESQEPMVRHEAAEALGAIGD----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIAN 138 (289)
T ss_pred hHHHHHHhcccccchHHHHHHHHHHHhhcc----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccc
Confidence 344444555544444556677666655431 2345666677777888888877777665532
Q ss_pred cCHHHHHHH---HhcChHHHHHH-hhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHH
Q psy14164 171 NNPFSQNFI---IQTDFLNLLLT-SIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKS 246 (361)
Q Consensus 171 nn~~~q~~v---~~~g~l~~Ll~-LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA 246 (361)
.+|..+..= ...+-+.-|-. +++.....--|..|.++|-|+ |.+.++.+| ++.|..++.-.|..+
T Consensus 139 ~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~--g~EeaI~al---------~~~l~~~SalfrhEv 207 (289)
T KOG0567|consen 139 SSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI--GTEEAINAL---------IDGLADDSALFRHEV 207 (289)
T ss_pred cCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc--CcHHHHHHH---------HHhcccchHHHHHHH
Confidence 222211000 01112333333 333323334566777777665 344444444 334444455555666
Q ss_pred HHHHHHH
Q psy14164 247 CFLIACL 253 (361)
Q Consensus 247 ~~ll~~L 253 (361)
+|++..|
T Consensus 208 AfVfGQl 214 (289)
T KOG0567|consen 208 AFVFGQL 214 (289)
T ss_pred HHHHhhc
Confidence 6665554
No 266
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=78.58 E-value=45 Score=33.12 Aligned_cols=133 Identities=12% Similarity=0.126 Sum_probs=80.6
Q ss_pred CHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCC--CHHHHHHHHHHHHHHhcCChh------------hH
Q psy14164 154 DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS--NTTVQVKSLYAVSCLVRENEE------------CL 219 (361)
Q Consensus 154 ~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~--~~~v~~~Al~ALS~l~r~~~~------------~~ 219 (361)
...-|..|+..|-.++...+..-..++ .+.+..++.-...++ +-.-+-.|++.+++++..... ..
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred cCCcHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 356788999999999876443221111 123333333222222 334556689999988754321 35
Q ss_pred HHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHH
Q psy14164 220 KEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL 295 (361)
Q Consensus 220 ~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL 295 (361)
..|.....+|-|. .=.+..+-+|..|++.+..+-..-+ ++.+. ++++.++.+|.++ +.-++..|+.++
T Consensus 303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~--~~~l~--~~~~~l~~~L~~~---~~vv~tyAA~~i 370 (370)
T PF08506_consen 303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP--KEQLL--QIFPLLVNHLQSS---SYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS---HHHHH--HHHHHHHHHTTSS----HHHHHHHHHHH
T ss_pred HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC--HHHHH--HHHHHHHHHhCCC---CcchhhhhhhhC
Confidence 6777777777665 2224468899999999998866532 23333 5899999999998 888888887764
No 267
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=78.46 E-value=19 Score=36.98 Aligned_cols=65 Identities=12% Similarity=0.134 Sum_probs=44.4
Q ss_pred HHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc
Q psy14164 173 PFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS 237 (361)
Q Consensus 173 ~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s 237 (361)
..+.+++.+.+.++.|+.+|....+..++..|+..|+.|++-+.......-..-|...|.+-|.+
T Consensus 52 ~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S 116 (475)
T PF04499_consen 52 TGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVS 116 (475)
T ss_pred HHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhC
Confidence 34566777889999999999877778999999999999887543332222222244555555544
No 268
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=78.41 E-value=29 Score=28.83 Aligned_cols=94 Identities=16% Similarity=0.242 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc-hHHHHHHhCC-cHHHHHHhccC
Q psy14164 202 VKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN-QVKQVLLSMG-MVEQMCVLIDI 279 (361)
Q Consensus 202 ~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~-~~~~~l~~~g-~i~~Lv~lL~~ 279 (361)
....--|+.+++.++.....+ ...|..=|++++..|+.|++.+|.+|+..++ .++..+.+.- .|..+.++=..
T Consensus 19 gy~~~Eia~~t~~s~~~~~ei-----~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~ 93 (122)
T cd03572 19 GYLYEEIAKLTRKSVGSCQEL-----LEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGP 93 (122)
T ss_pred hHHHHHHHHHHHcCHHHHHHH-----HHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCC
Confidence 344556778888765554444 4577888888999999999999999998754 6666666543 35554444332
Q ss_pred C-----CCCChhHHHHHHHHHHHHHh
Q psy14164 280 E-----DALDTEMNEHLLSALASLIK 300 (361)
Q Consensus 280 ~-----~~~d~~~~e~al~aL~~L~~ 300 (361)
+ ......+|+.|-.++..|..
T Consensus 94 ~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 94 PDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred CCcccCcchhHHHHHHHHHHHHHHhc
Confidence 2 11124577877777766654
No 269
>KOG2038|consensus
Probab=77.71 E-value=57 Score=35.38 Aligned_cols=74 Identities=19% Similarity=0.295 Sum_probs=57.6
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHH
Q psy14164 184 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQV 263 (361)
Q Consensus 184 ~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~ 263 (361)
.|..|..+ ++++=..|+.+++..|-.+..+.|.+.. +.+..||.-|..+..++-.+|..+|..|...+|..+..
T Consensus 305 fievLe~l-S~D~L~~vk~raL~ti~~lL~~kPEqE~-----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 305 FIEVLEEL-SKDPLEEVKKRALKTIYDLLTNKPEQEN-----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHH-ccccHHHHHHHHHHHHHHHHhCCcHHHH-----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 33433333 3345678999999999999998887643 34678899999999999999999999999988865543
No 270
>KOG2038|consensus
Probab=77.13 E-value=1.1e+02 Score=33.31 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=56.7
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChH
Q psy14164 228 FSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPE 304 (361)
Q Consensus 228 i~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~ 304 (361)
++.|..+-..+-..|+.+|+..|++|+.+.|++-..+ +..+|+-|..+ +..+--+|-..|..|...+|.
T Consensus 306 ievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~L-----L~~lVNKlGDp---qnKiaskAsylL~~L~~~HPn 374 (988)
T KOG2038|consen 306 IEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNL-----LVLLVNKLGDP---QNKIASKASYLLEGLLAKHPN 374 (988)
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHH-----HHHHHHhcCCc---chhhhhhHHHHHHHHHhhCCc
Confidence 4555555556678999999999999999988876544 66788888888 888999999999999998885
No 271
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=76.75 E-value=8.4 Score=34.66 Aligned_cols=121 Identities=14% Similarity=0.132 Sum_probs=52.1
Q ss_pred HHHHHHHHhcChHHHHHHhhccCCC-----------------HHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhh
Q psy14164 173 PFSQNFIIQTDFLNLLLTSIEHDSN-----------------TTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCI 235 (361)
Q Consensus 173 ~~~q~~v~~~g~l~~Ll~LL~~~~~-----------------~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL 235 (361)
...|..+.+.|++..++.+|...-+ ..+-..+...|...|++|+.++..+.++ ++.++..+
T Consensus 33 ~~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~ 110 (207)
T PF01365_consen 33 RERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIF 110 (207)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----H
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHH
Confidence 4567788888999988888864211 2466788889999999999998888764 33223333
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164 236 QSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD 301 (361)
Q Consensus 236 ~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~ 301 (361)
.......-.-+.-+++.+..++++....+.+.. |..++.+|... . -....+..|..|...
T Consensus 111 ~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~---g--r~~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 111 MQLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKH---G--RQPRYLDFLSSLCVC 170 (207)
T ss_dssp HCCCH-TTHHHHHHHHHHHTT---------------------------------------------
T ss_pred HHhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHc---C--CChHHHHHHhhhccc
Confidence 222222224566778888888888877776554 88999999873 1 223345556555543
No 272
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=76.69 E-value=62 Score=29.77 Aligned_cols=128 Identities=20% Similarity=0.194 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHHHhhcCc-ccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHh
Q psy14164 113 QKDICIGALDNLSDYICSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 191 (361)
Q Consensus 113 ~~~~~~~Al~~L~~lve~i-dna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~L 191 (361)
+.+.....+..|-.++..- .+... .+..|..+...+....+.-+.+.+..+...++..- +.+..++..
T Consensus 14 ~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L~~~L~~ 82 (234)
T PF12530_consen 14 DPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFLQPLLLL 82 (234)
T ss_pred ChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHHHHHHHH
Confidence 3466777788888877543 21111 24556666677778888889999999988887654 445544444
Q ss_pred ---------hccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhh-ccCCHHHHHHHHHHHHHHhcC
Q psy14164 192 ---------IEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCI-QSKKEKLVIKSCFLIACLCTD 256 (361)
Q Consensus 192 ---------L~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL-~s~~~~v~~kA~~ll~~L~~~ 256 (361)
-..+...........++-.+|+..|... ..-++.|..+| +..+..++.-+.-+++.|+..
T Consensus 83 ~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 83 LILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred HHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 1111222444445567777777666521 22456778888 788899999999999999954
No 273
>KOG2676|consensus
Probab=75.97 E-value=3 Score=40.93 Aligned_cols=64 Identities=17% Similarity=0.164 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhc-cCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy14164 160 RAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE-HDSNTTVQVKSLYAVSCLVRENEECLKEFI 223 (361)
Q Consensus 160 ~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~-~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~ 223 (361)
+-.+.||++|-.++..|+.+-+.||++.++.-.. ++.++-++...++|+-.+..+|..+++-+-
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 3567999999999999999999999999888654 456789999999999999999988866553
No 274
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=75.47 E-value=39 Score=36.38 Aligned_cols=81 Identities=23% Similarity=0.332 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHH
Q psy14164 154 DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLR 233 (361)
Q Consensus 154 ~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~ 233 (361)
.+.-|..|+.+||.+++..|..--.+++...++.|+++|..+.+..+...|+.+|.-+.=+-+.....++ ...+.+..+
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L-~~Lf~If~R 159 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHL-PDLFNIFGR 159 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHH-HHHHHHHHH
Confidence 4577899999999999999998888999999999999999988989999999999988776665544443 233444444
Q ss_pred hh
Q psy14164 234 CI 235 (361)
Q Consensus 234 lL 235 (361)
++
T Consensus 160 l~ 161 (668)
T PF04388_consen 160 LL 161 (668)
T ss_pred HH
Confidence 44
No 275
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=75.28 E-value=15 Score=34.57 Aligned_cols=69 Identities=17% Similarity=0.047 Sum_probs=42.7
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164 230 VLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 230 ~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
.|-..|.+++..+|.||..+++.++..-+... ++..-+..|+.++.+. -.|......++.++..|+...
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~r-l~D~~~~~~~l~gl~~L~~~~ 71 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSR-LDDHACVQPALKGLLALVKMK 71 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHH-hccHhhHHHHHHHHHHHHhCc
Confidence 45567888999999999999999987644211 1112234444443321 115555666688888887543
No 276
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=74.99 E-value=53 Score=30.99 Aligned_cols=166 Identities=17% Similarity=0.252 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhhcCccc-----HHHHHHCCCHH-HHHHhhcC--CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHH
Q psy14164 115 DICIGALDNLSDYICSIDY-----ANDFLKMGGLP-VLQPLLEG--SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLN 186 (361)
Q Consensus 115 ~~~~~Al~~L~~lve~idn-----a~~~~~~Gg~~-~Lv~LL~s--~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~ 186 (361)
++.+..|.+|..++..-|. +..+.+.+.++ -|+.+|.+ .++.+-..+++++.+++. |.-.
T Consensus 9 ~dcl~~LkdL~r~lr~dd~~~~~v~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~--P~~~---------- 76 (266)
T PF04821_consen 9 DDCLECLKDLKRFLRRDDEDQRDVRRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTW--PIEL---------- 76 (266)
T ss_pred HhHHHHHHHHHHHHHHhCcchHHHHHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCC--CHHH----------
Confidence 4556666666665543332 33344555554 46776644 468888888888888874 3111
Q ss_pred HHHHhhccC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhc-----------cCCHHHHHHHHHHHHHHh
Q psy14164 187 LLLTSIEHD-SNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQ-----------SKKEKLVIKSCFLIACLC 254 (361)
Q Consensus 187 ~Ll~LL~~~-~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~-----------s~~~~v~~kA~~ll~~L~ 254 (361)
+ .... .+...+.....-.-.+. ....+|.+.+.+..++..+. ..+..+-.....+|.|++
T Consensus 77 -~---~~~~~~~~~~~~~~~~l~~~l~----~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL 148 (266)
T PF04821_consen 77 -L---VESQPKDKNQRRNIPELLKYLQ----SYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLL 148 (266)
T ss_pred -h---ccCCCCChHHHHHHHHHHHHHH----HHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHh
Confidence 0 1111 12222222222222222 23345555555565555442 126788888999999998
Q ss_pred cCC----------------chHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164 255 TDN----------------NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 255 ~~~----------------~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
.-. ......+.+.|+...|+.+.++.. ..++....+..+..+..+.
T Consensus 149 ~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~--~~~f~~~lLEIi~ll~k~~ 210 (266)
T PF04821_consen 149 AIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQ--ESDFNLLLLEIIYLLFKGQ 210 (266)
T ss_pred cCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCcc--ccchhhHHHHHHHHHHcCC
Confidence 641 134567778999999999888752 3456668899998888766
No 277
>KOG1087|consensus
Probab=74.95 E-value=25 Score=36.00 Aligned_cols=68 Identities=16% Similarity=0.235 Sum_probs=56.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHH-HHHHHHhcChHHHHHHhhccC-CCHHHHHHHHHHHHH
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPF-SQNFIIQTDFLNLLLTSIEHD-SNTTVQVKSLYAVSC 210 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~-~q~~v~~~g~l~~Ll~LL~~~-~~~~v~~~Al~ALS~ 210 (361)
+..|.+-|++.++.++..|+.+|-.|+.|.-. +...|.+.+++.-+|++.... .+..||.+++..|=.
T Consensus 40 vralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 40 VRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 44556677788889999999999999998655 455788999999999999876 677999999987754
No 278
>KOG0915|consensus
Probab=74.89 E-value=85 Score=36.67 Aligned_cols=153 Identities=15% Similarity=0.198 Sum_probs=99.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEF 222 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f 222 (361)
+|.|.++=-.|+..|+..=..+.+.+++.....-+..+. ..+.-|+.-+.+ ..=-||..++.||+-+++|.+. ..|
T Consensus 1000 IPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~-kewRVReasclAL~dLl~g~~~--~~~ 1075 (1702)
T KOG0915|consen 1000 IPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTS-KEWRVREASCLALADLLQGRPF--DQV 1075 (1702)
T ss_pred hHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccc-hhHHHHHHHHHHHHHHHcCCCh--HHH
Confidence 677777777899999999999999999886665555443 355656665554 3447999999999999998654 344
Q ss_pred Hhh--CcHHHHHHhhccCCHHHHH---HHHHHHHHHhcC--C----chHHHHHHhCCcHHHHHH--hccCCCCCChhHHH
Q psy14164 223 IKR--DGFSVLLRCIQSKKEKLVI---KSCFLIACLCTD--N----NQVKQVLLSMGMVEQMCV--LIDIEDALDTEMNE 289 (361)
Q Consensus 223 ~~~--ggi~~Lv~lL~s~~~~v~~---kA~~ll~~L~~~--~----~~~~~~l~~~g~i~~Lv~--lL~~~~~~d~~~~e 289 (361)
.+. ..|..+.+.+.+-.+.||. +++.+++.|+.. + ...++.+ ..++|.|.. .+ ++ -..+|.
T Consensus 1076 ~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l--~~iLPfLl~~gim-s~---v~evr~ 1149 (1702)
T KOG0915|consen 1076 KEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL--DIILPFLLDEGIM-SK---VNEVRR 1149 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH--HHHHHHHhccCcc-cc---hHHHHH
Confidence 432 4566777777665555554 456666666532 1 1112221 123333332 12 33 578899
Q ss_pred HHHHHHHHHHhcChHH
Q psy14164 290 HLLSALASLIKDSPEA 305 (361)
Q Consensus 290 ~al~aL~~L~~~~~~~ 305 (361)
.++.+|.-|+..++..
T Consensus 1150 ~si~tl~dl~Kssg~~ 1165 (1702)
T KOG0915|consen 1150 FSIGTLMDLAKSSGKE 1165 (1702)
T ss_pred HHHHHHHHHHHhchhh
Confidence 9999999999877643
No 279
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=72.38 E-value=28 Score=37.47 Aligned_cols=59 Identities=19% Similarity=0.342 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcC
Q psy14164 198 TTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTD 256 (361)
Q Consensus 198 ~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~-~~~v~~kA~~ll~~L~~~ 256 (361)
..-|..++.-||.++|..|+....+.+...+.-|+.+|..+ +.-+..-|+.+|.-|+=.
T Consensus 82 ~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 82 PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 36899999999999999999999999999999999999865 778888888888877644
No 280
>KOG1243|consensus
Probab=72.07 E-value=59 Score=34.74 Aligned_cols=131 Identities=13% Similarity=0.151 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCC--HHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHH
Q psy14164 112 DQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSD--PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLL 189 (361)
Q Consensus 112 ~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~--~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll 189 (361)
.+.++|..=+.-|.+.++. ...++++.-.++.|+..+...+ ..+..+...+ |.....-+ +..+++|.|+
T Consensus 266 ks~~eK~~Ff~~L~~~l~~--~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~-~k~ld~~e------yq~~i~p~l~ 336 (690)
T KOG1243|consen 266 KSVEEKQKFFSGLIDRLDN--FPEEIIASKVLPILLAALEFGDAASDFLTPLFKL-GKDLDEEE------YQVRIIPVLL 336 (690)
T ss_pred CcHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhccccchhhhhHHHHh-hhhccccc------cccchhhhHH
Confidence 3456777666666554432 2356777777888887776554 3344433333 33332222 4457899999
Q ss_pred HhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhc
Q psy14164 190 TSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT 255 (361)
Q Consensus 190 ~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~ 255 (361)
+|+.. .+..+|...+.-+=..+.+-. +..+..-.+|.+...+.+++.-+|..++-.+..|+.
T Consensus 337 kLF~~-~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 337 KLFKS-PDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP 398 (690)
T ss_pred HHhcC-cchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 99997 688999888777777766533 345566789999999999999999999999888875
No 281
>PRK14707 hypothetical protein; Provisional
Probab=71.91 E-value=2.5e+02 Score=34.48 Aligned_cols=155 Identities=14% Similarity=0.153 Sum_probs=100.5
Q ss_pred CHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHH
Q psy14164 142 GLPVLQPLLE-GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLK 220 (361)
Q Consensus 142 g~~~Lv~LL~-s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~ 220 (361)
++...++-|+ =|+...-..|+.+|+.-....+..+..+- .-.+...+.-|++=++......|+.+|..-+...+...+
T Consensus 836 ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e~~LR~aL~-~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~Lrq 914 (2710)
T PRK14707 836 HVATVLNAMSKWPDNAVCAAAAGAMAERLADEPELRHTLT-AHGVVIVLNALSKWPNVPVCAAAASALAERLADEPELRK 914 (2710)
T ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHHhcChhhhhccc-hHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHHHHh
Confidence 3555555453 37888888899999988888887766542 233445555566556677888899999988776666666
Q ss_pred HHHhhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164 221 EFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 299 (361)
Q Consensus 221 ~f~~~ggi~~Lv~lL~s-~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~ 299 (361)
+| +.-++.-.++.|+. ++...-+.|+.+|..=+..++..+..|-.+++...|-.|=+=+ +......+..+|..-+
T Consensus 915 al-~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~Aln~Q~lsNtLNALSKWP---d~~~c~~AA~aLA~rL 990 (2710)
T PRK14707 915 AL-SAHRVATALNALSKWPDIPVCATAASALAERLSDDPDLREALDASNLPQVLNALSKWP---DVPAGGEVVDALAERL 990 (2710)
T ss_pred hc-cHHHHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhhhccHHHHHHHHhhhccCC---CchHHHHHHHHHHHHH
Confidence 55 56778888888875 5555666666666655555777877776666555444432223 4445555555555544
Q ss_pred hc
Q psy14164 300 KD 301 (361)
Q Consensus 300 ~~ 301 (361)
..
T Consensus 991 ~~ 992 (2710)
T PRK14707 991 VD 992 (2710)
T ss_pred hc
Confidence 33
No 282
>KOG0211|consensus
Probab=71.54 E-value=86 Score=34.24 Aligned_cols=131 Identities=15% Similarity=0.182 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccC
Q psy14164 116 ICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD 195 (361)
Q Consensus 116 ~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~ 195 (361)
.+..+++.+..+.-.... +.++.-..+..-.+.+...+.||..++.=+|++++.- .+.....+.+|.+.+|...+
T Consensus 214 sr~sacglf~~~~~~~~~--~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~---~~~~~~s~v~~~~~~L~~Dd 288 (759)
T KOG0211|consen 214 SRLSACGLFGKLYVSLPD--DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVL---ESEIVKSEVLPTLIQLLRDD 288 (759)
T ss_pred cchhhhhhhHHhccCCCh--HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHH---HHHHHHhhccHHHhhhhhcc
Confidence 345555555554433321 4455554555556777889999999999999988654 34677889999999999975
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHh
Q psy14164 196 SNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLC 254 (361)
Q Consensus 196 ~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~ 254 (361)
. ..||..|.-++-++........ .. ..-+.+.++....+++.+++-...-....|.
T Consensus 289 q-dsVr~~a~~~~~~l~~l~~~~~-d~-~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~ 344 (759)
T KOG0211|consen 289 Q-DSVREAAVESLVSLLDLLDDDD-DV-VKSLTESLVQAVEDGSWRVSYMVADKFSELS 344 (759)
T ss_pred h-hhHHHHHHHHHHHHHHhcCCch-hh-hhhhhHHHHHHhcChhHHHHHHHhhhhhhHH
Confidence 4 5899888888887765433221 22 2346778888888888777777666655554
No 283
>KOG2199|consensus
Probab=70.73 E-value=59 Score=32.49 Aligned_cols=96 Identities=10% Similarity=0.199 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhc
Q psy14164 199 TVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLI 277 (361)
Q Consensus 199 ~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL 277 (361)
.-....+..++-.+..++.. ...++..|.+-|...+.-|...|..++-.++.+ +..++..+-+..|...|..++
T Consensus 23 ~enW~~IlDvCD~v~~~~~~-----~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~ 97 (462)
T KOG2199|consen 23 SENWSLILDVCDKVGSDPDG-----GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALI 97 (462)
T ss_pred cccHHHHHHHHHhhcCCCcc-----cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHH
Confidence 33445666666666655543 234678888899999999999999999999887 667888999999999999999
Q ss_pred c-CCCCCChhHHHHHHHHHHHHHhcC
Q psy14164 278 D-IEDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 278 ~-~~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
. +. +..++++.-..+...+..+
T Consensus 98 ~~~~---h~kV~~k~~~lv~eWsee~ 120 (462)
T KOG2199|consen 98 ESKA---HPKVCEKMRDLVKEWSEEF 120 (462)
T ss_pred hhcc---cHHHHHHHHHHHHHHHHHh
Confidence 8 44 8899998877777776533
No 284
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=70.46 E-value=47 Score=26.87 Aligned_cols=73 Identities=18% Similarity=0.144 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcC
Q psy14164 97 GAELEKIIKTLKENQ--DQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEG--SDPELRWRAAETVADIVQNN 172 (361)
Q Consensus 97 ~~~mk~~l~~L~~~~--~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s--~~~~vr~~Aa~~Lg~iaqnn 172 (361)
.-.|...-.++.+.. .+..+|..++..+.++++-.. ..+ ..+.|.+..+|++ ..+++|..|+.+...+++.=
T Consensus 10 LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g--~~i--~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 10 LGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMG--KHI--SSALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 334555556666655 356899999999999997322 111 2357888888876 67889999999999888754
Q ss_pred H
Q psy14164 173 P 173 (361)
Q Consensus 173 ~ 173 (361)
+
T Consensus 86 ~ 86 (107)
T smart00802 86 K 86 (107)
T ss_pred C
Confidence 4
No 285
>KOG2032|consensus
Probab=69.88 E-value=46 Score=34.19 Aligned_cols=115 Identities=15% Similarity=0.236 Sum_probs=74.8
Q ss_pred hcChHHHHHHhhc---cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcC
Q psy14164 181 QTDFLNLLLTSIE---HDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTD 256 (361)
Q Consensus 181 ~~g~l~~Ll~LL~---~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s-~~~~v~~kA~~ll~~L~~~ 256 (361)
+.|.+.-++..+. .+++..+|..|+..|.+++.+.|.....-.. --+..++..|.+ .+..|+-.|..++..++..
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 3455555444432 2466789999999999999886654333221 234455555554 4789999888888876643
Q ss_pred --CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhc
Q psy14164 257 --NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD 301 (361)
Q Consensus 257 --~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~ 301 (361)
+.....+++ ++.-.+..+..+. ++++|..+..++..|+.-
T Consensus 331 ~~~~~l~~~~l--~ialrlR~l~~se---~~~~R~aa~~Lfg~L~~l 372 (533)
T KOG2032|consen 331 ASNDDLESYLL--NIALRLRTLFDSE---DDKMRAAAFVLFGALAKL 372 (533)
T ss_pred hhhcchhhhch--hHHHHHHHHHHhc---ChhhhhhHHHHHHHHHHH
Confidence 334444444 3445677778877 889998888887777753
No 286
>KOG1820|consensus
Probab=69.79 E-value=1.8e+02 Score=32.09 Aligned_cols=145 Identities=15% Similarity=0.150 Sum_probs=102.5
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhcCH-HHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q psy14164 146 LQPLLEGSDPELRWRAAETVADIVQNNP-FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIK 224 (361)
Q Consensus 146 Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~-~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~ 224 (361)
+..-+.|++-.-|..|+.-+.-+..+.. ..+. -..|.+-.+++....+.+..|...|+..|.-|+.........+.
T Consensus 258 l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~--~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~- 334 (815)
T KOG1820|consen 258 LETEMLSKKWKDRKEALEELVAILEEAKKEIVK--GYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA- 334 (815)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHhcccccccc--CcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH-
Confidence 3345667788888888888887776655 1111 22466777777777778889999999999999998877766665
Q ss_pred hCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164 225 RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP 303 (361)
Q Consensus 225 ~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~ 303 (361)
.+.++.|+..+...-..++-.+.-++-.++...+. ..+.+.+...|... ++.++..+...+...+....
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~k---np~~k~~~~~~l~r~~~~~~ 403 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGK---NPQIKGECLLLLDRKLRKLG 403 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCC---ChhhHHHHHHHHHHHHhhcC
Confidence 56788888888876666665555555444432221 23567788888888 99999998888887776554
No 287
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=69.68 E-value=15 Score=30.10 Aligned_cols=40 Identities=18% Similarity=0.308 Sum_probs=34.3
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhc
Q psy14164 142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQT 182 (361)
Q Consensus 142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~ 182 (361)
|++.|+..|..++++|...|..+|-.++..+ .+.+.++..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHHc
Confidence 5899999999999999999999999999877 666666554
No 288
>KOG2137|consensus
Probab=69.45 E-value=72 Score=34.21 Aligned_cols=137 Identities=19% Similarity=0.138 Sum_probs=91.7
Q ss_pred CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHH-hhcCCCHHHHHHHHHHHHHHhhc
Q psy14164 95 NVGAELEKIIKTLKENQD--QKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQP-LLEGSDPELRWRAAETVADIVQN 171 (361)
Q Consensus 95 ~~~~~mk~~l~~L~~~~~--~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~-LL~s~~~~vr~~Aa~~Lg~iaqn 171 (361)
+..+...+++..|-..-+ +......+|..+--..+.+| -.|++--.+|.|-. ++.+.+..++..++-|++-+++.
T Consensus 382 ~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~ 459 (700)
T KOG2137|consen 382 PPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR 459 (700)
T ss_pred ChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH
Confidence 344556666666654333 34566777888777788888 55677677888877 46789999999999999999954
Q ss_pred CHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCC
Q psy14164 172 NPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKK 239 (361)
Q Consensus 172 n~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~ 239 (361)
-+..+ -..-+.++.+.... .++.+....+...-++....... ..|+.++.+|.++.+...+.
T Consensus 460 lD~~~----v~d~~lpi~~~~~~-~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 460 LDKAA----VLDELLPILKCIKT-RDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHH----hHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence 33322 22345556666654 35577776666666665544443 56777788888887766553
No 289
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=69.22 E-value=24 Score=29.06 Aligned_cols=84 Identities=26% Similarity=0.319 Sum_probs=55.7
Q ss_pred CCCHHhHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCC
Q psy14164 76 SMNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQ--KDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGS 153 (361)
Q Consensus 76 ~~s~e~~~~L~eal~~~~~~~~~~mk~~l~~L~~~~~~--~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~ 153 (361)
..+.+||+.++++|.+..+.-.+.+.+ ++...... .+....+++.+..++.-++ ...+....-++.+.++|.++
T Consensus 63 ~~~~~r~~~l~~~l~~~~~~i~~~l~~---~l~~~~~~~~~~~~~~~L~~l~s~i~~~~-~~~i~~~~~l~~~~~~l~~~ 138 (148)
T PF08389_consen 63 SLSQERRRELKDALRSNSPDILEILSQ---ILSQSSSEANEELVKAALKCLKSWISWIP-IELIINSNLLNLIFQLLQSP 138 (148)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCHCCHHHHHHHHHHHHHHHTTTS--HHHHHSSSHHHHHHHHTTSC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhccccHHHHHHHHHHHHHHHHHhCC-HHHhccHHHHHHHHHHcCCH
Confidence 466788998999888774333333333 33333222 5778889999999998655 44455566788888888554
Q ss_pred CHHHHHHHHHHH
Q psy14164 154 DPELRWRAAETV 165 (361)
Q Consensus 154 ~~~vr~~Aa~~L 165 (361)
+ ++..|+.||
T Consensus 139 ~--~~~~A~~cl 148 (148)
T PF08389_consen 139 E--LREAAAECL 148 (148)
T ss_dssp C--CHHHHHHHH
T ss_pred H--HHHHHHHhC
Confidence 4 488888875
No 290
>KOG1949|consensus
Probab=69.17 E-value=1.6e+02 Score=32.03 Aligned_cols=135 Identities=16% Similarity=0.157 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHhhc--Cccc-HHHH--HHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHh---cChH
Q psy14164 114 KDICIGALDNLSDYIC--SIDY-ANDF--LKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQ---TDFL 185 (361)
Q Consensus 114 ~~~~~~Al~~L~~lve--~idn-a~~~--~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~---~g~l 185 (361)
-+.+..|+..+-++.- +.|. +.++ .--.-+..+..||+++-+.||.-|..=+..+.. .....+=. ..++
T Consensus 188 s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s---~fWe~iP~~i~~~ll 264 (1005)
T KOG1949|consen 188 SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITS---KFWEMIPPTILIDLL 264 (1005)
T ss_pred hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---HHHHHcCHHHHHHHH
Confidence 3678888888877643 3332 2221 111347888999999999999998877766542 12221111 1234
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHh
Q psy14164 186 NLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLC 254 (361)
Q Consensus 186 ~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~ 254 (361)
..+..-+..++...||....-.|--|.. +|..-..| .-|+|.|-..|++...+||..+.-+|.-+-
T Consensus 265 ~kI~d~~a~dt~s~VR~svf~gl~~~l~-np~sh~~l--e~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 265 KKITDELAFDTSSDVRCSVFKGLPMILD-NPLSHPLL--EQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHHHHHhhhccchheehhHhcCcHHHHc-CccchhHH--HHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 4444455556666888888877777765 45443333 346788888999999999998888777653
No 291
>KOG0211|consensus
Probab=69.01 E-value=99 Score=33.79 Aligned_cols=146 Identities=12% Similarity=0.104 Sum_probs=94.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy14164 144 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFI 223 (361)
Q Consensus 144 ~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~ 223 (361)
+++-.+.......+|..++..+-.++...++.+.. .-.+|.+..+-.. .--.-|..++...+...-..+ ..++
T Consensus 162 ~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~---~~lv~l~~~l~~~-d~~~sr~sacglf~~~~~~~~---~~~v 234 (759)
T KOG0211|consen 162 PPLELLATVEETGVREKAVESLLKVAVGLPKEKLR---EHLVPLLKRLATG-DWFQSRLSACGLFGKLYVSLP---DDAV 234 (759)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHH---HHHHHHHHHccch-hhhhcchhhhhhhHHhccCCC---hHHH
Confidence 34444455567788999999999999888766551 2234444443332 112334445555544433222 1344
Q ss_pred hhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164 224 KRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 224 ~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
+....+...++-+...+.++.-++.-+.+++.. ........++++.+.+++..+ ...+|+.|...+..+...-
T Consensus 235 k~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~---~~~~~~~s~v~~~~~~L~~Dd---qdsVr~~a~~~~~~l~~l~ 307 (759)
T KOG0211|consen 235 KRELRPIVQSLCQDDTPMVRRAVASNLGNIAKV---LESEIVKSEVLPTLIQLLRDD---QDSVREAAVESLVSLLDLL 307 (759)
T ss_pred HHHHHHHHHhhccccchhhHHHHHhhhHHHHHH---HHHHHHHhhccHHHhhhhhcc---hhhHHHHHHHHHHHHHHhc
Confidence 455566666777777888888888877777653 333667778888999988877 7889999988888887643
No 292
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=68.46 E-value=88 Score=27.94 Aligned_cols=75 Identities=13% Similarity=0.113 Sum_probs=54.9
Q ss_pred hCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164 225 RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP 303 (361)
Q Consensus 225 ~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~ 303 (361)
+.-++.+++.|...+.-.+.-|...+..|+.. ..+-.--++ -.+|.+|-..|.+. +.++...+|.+|..|+..++
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr---~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTR---DPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHhhh
Confidence 35678888888888777777777778888766 322222222 24567777888888 99999999999999977664
No 293
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=68.21 E-value=55 Score=31.05 Aligned_cols=70 Identities=10% Similarity=0.149 Sum_probs=47.8
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhH-HHHHhhCcHHHHHHhh----c--------cCCHHHHHHHHHHH
Q psy14164 184 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECL-KEFIKRDGFSVLLRCI----Q--------SKKEKLVIKSCFLI 250 (361)
Q Consensus 184 ~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~-~~f~~~ggi~~Lv~lL----~--------s~~~~v~~kA~~ll 250 (361)
++|+++.++++ .+..+|..++..|..+..+.+... ..+.+.|-.+.+.+.| . .....+-..|--++
T Consensus 120 iiP~iL~llDD-~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDD-YSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcC-CCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 79999999996 578999999999999998766654 2255555555444433 3 22445555555566
Q ss_pred HHHh
Q psy14164 251 ACLC 254 (361)
Q Consensus 251 ~~L~ 254 (361)
..|+
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 6554
No 294
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=67.67 E-value=41 Score=33.22 Aligned_cols=93 Identities=14% Similarity=0.249 Sum_probs=65.5
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCCchHHHH
Q psy14164 185 LNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQVKQV 263 (361)
Q Consensus 185 l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~-~~~v~~kA~~ll~~L~~~~~~~~~~ 263 (361)
+..++.=+.+..+..+|..++-.|+.-+. ++.-...|..+|....++..+... +..+-.-++.++.++...+......
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 45566655555567899999999999988 566778888999999999999543 3335555555666666655545555
Q ss_pred HHhCCcHHHHHHhcc
Q psy14164 264 LLSMGMVEQMCVLID 278 (361)
Q Consensus 264 l~~~g~i~~Lv~lL~ 278 (361)
+.+.+.+..++.+|.
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 556667777778777
No 295
>KOG0915|consensus
Probab=67.46 E-value=1.8e+02 Score=34.27 Aligned_cols=182 Identities=11% Similarity=0.080 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHhhcCcccHHHHHHC-CCHHHHHHhhcCCCHHHHHH---HHHHHHHHhh-----cCHHHHHHHHhcChH
Q psy14164 115 DICIGALDNLSDYICSIDYANDFLKM-GGLPVLQPLLEGSDPELRWR---AAETVADIVQ-----NNPFSQNFIIQTDFL 185 (361)
Q Consensus 115 ~~~~~Al~~L~~lve~idna~~~~~~-Gg~~~Lv~LL~s~~~~vr~~---Aa~~Lg~iaq-----nn~~~q~~v~~~g~l 185 (361)
..++.++-+|.+++...++-.-..++ .-|..+.+....-...||.. ++.+|+.++- .|+.--+.+++ -++
T Consensus 1054 RVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~-~iL 1132 (1702)
T KOG0915|consen 1054 RVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD-IIL 1132 (1702)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH-HHH
Confidence 57888899999999776654433222 23555555555555667765 4555665542 12322233332 377
Q ss_pred HHHHH--hhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHH-----------HHHHHHH-
Q psy14164 186 NLLLT--SIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVI-----------KSCFLIA- 251 (361)
Q Consensus 186 ~~Ll~--LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~-----------kA~~ll~- 251 (361)
|-|+. .+ + +-++||+.++..|.-|+.+.+.....+. ..-++.|+++...-.+.|-. +|.--++
T Consensus 1133 PfLl~~gim-s-~v~evr~~si~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~ 1209 (1702)
T KOG0915|consen 1133 PFLLDEGIM-S-KVNEVRRFSIGTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRA 1209 (1702)
T ss_pred HHHhccCcc-c-chHHHHHHHHHHHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHH
Confidence 77776 34 3 4569999999999999998887766665 45677777776654332221 1111111
Q ss_pred HHhcCCch--HH-------HHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164 252 CLCTDNNQ--VK-------QVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 252 ~L~~~~~~--~~-------~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
+.+.+.|- .. +.-+=..+++.++++++++ .....+.-+...+..|+...
T Consensus 1210 s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~s--Vgl~Tkvg~A~fI~~L~~r~ 1267 (1702)
T KOG0915|consen 1210 SAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGS--VGLGTKVGCASFISLLVQRL 1267 (1702)
T ss_pred hhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--CCCCcchhHHHHHHHHHHHh
Confidence 22222221 11 1111124677888888765 23344555666666666544
No 296
>KOG2199|consensus
Probab=67.43 E-value=42 Score=33.52 Aligned_cols=98 Identities=19% Similarity=0.141 Sum_probs=62.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHH-HHHHH
Q psy14164 101 EKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPF-SQNFI 179 (361)
Q Consensus 101 k~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~-~q~~v 179 (361)
+..+...+++-.+.++=--.|+.+-.+-.+.|.+.+ ++..|.+=|++.++.|...|+.+++.|+.|... .+..|
T Consensus 10 e~~v~KAT~e~nT~enW~~IlDvCD~v~~~~~~~kd-----~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EV 84 (462)
T KOG2199|consen 10 EQDVEKATDEKNTSENWSLILDVCDKVGSDPDGGKD-----CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEV 84 (462)
T ss_pred HHHHHHhcCcccccccHHHHHHHHHhhcCCCcccHH-----HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHH
Confidence 334444444443433333334333333444455554 577888899999999999999999999988554 45556
Q ss_pred HhcChHHHHHHhhccCCCHHHHHH
Q psy14164 180 IQTDFLNLLLTSIEHDSNTTVQVK 203 (361)
Q Consensus 180 ~~~g~l~~Ll~LL~~~~~~~v~~~ 203 (361)
........|..++.+.....|+.+
T Consensus 85 sSr~F~~el~al~~~~~h~kV~~k 108 (462)
T KOG2199|consen 85 SSRDFTTELRALIESKAHPKVCEK 108 (462)
T ss_pred hhhhHHHHHHHHHhhcccHHHHHH
Confidence 666777778888874334445444
No 297
>KOG1078|consensus
Probab=67.10 E-value=25 Score=38.01 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhc
Q psy14164 197 NTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT 255 (361)
Q Consensus 197 ~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~ 255 (361)
+..+|..|+.|++.+..+++.. .......|.+++.+.|..+|.+|.|.+.++-.
T Consensus 479 n~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 479 NAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred hhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 3478899999999987554433 33445678899999999999999999998863
No 298
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=67.00 E-value=1.3e+02 Score=29.43 Aligned_cols=133 Identities=14% Similarity=0.141 Sum_probs=74.0
Q ss_pred CCCHHhHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHhhcCccc
Q psy14164 76 SMNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQ----------------------KDICIGALDNLSDYICSIDY 133 (361)
Q Consensus 76 ~~s~e~~~~L~eal~~~~~~~~~~mk~~l~~L~~~~~~----------------------~~~~~~Al~~L~~lve~idn 133 (361)
.+|+|-+.++.+.-+.+..++......++..|.....- .......+..+.-|+.+..-
T Consensus 171 ~LS~Elq~yf~~It~a~~~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l 250 (343)
T cd08050 171 VLSKELQLYFEEITEALVGSNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNL 250 (343)
T ss_pred ccCHHHHHHHHHHHHHHhCCCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCC
Confidence 58999999999887777756666778888888764411 11112222333333433222
Q ss_pred H--HHHHHCCCHHHHHHhhcC----------CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhcc-CCCHHH
Q psy14164 134 A--NDFLKMGGLPVLQPLLEG----------SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH-DSNTTV 200 (361)
Q Consensus 134 a--~~~~~~Gg~~~Lv~LL~s----------~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~-~~~~~v 200 (361)
. .-++. .+|.++.||-+ .+-.+|..|+.+|+.++..-...-.. +..-++..|.+.|.+ ......
T Consensus 251 ~le~Ylh~--Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~-l~~ri~~tl~k~l~d~~~~~~~ 327 (343)
T cd08050 251 HLEPYLHQ--LIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNT-LQPRITRTLLKALLDPKKPLTT 327 (343)
T ss_pred chHHhHHH--HHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHcCCCCCcch
Confidence 2 22333 57888887732 23489999999999998542211000 111223344444432 233344
Q ss_pred HHHHHHHHHHH
Q psy14164 201 QVKSLYAVSCL 211 (361)
Q Consensus 201 ~~~Al~ALS~l 211 (361)
+.-|+..|+.+
T Consensus 328 ~YGAi~GL~~l 338 (343)
T cd08050 328 HYGAIVGLSAL 338 (343)
T ss_pred hhHHHHHHHHh
Confidence 66666666665
No 299
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=66.93 E-value=1.5e+02 Score=29.88 Aligned_cols=155 Identities=15% Similarity=0.174 Sum_probs=94.6
Q ss_pred HHHHHhhcCCCH-HHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy14164 144 PVLQPLLEGSDP-ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEF 222 (361)
Q Consensus 144 ~~Lv~LL~s~~~-~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f 222 (361)
..|+.|.+++.- ....+=..++...+..+|.....++ ..|++.--. ++..=..-.+.-|..++...++..-.-
T Consensus 220 ~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i-----~~llk~WP~-t~s~Kev~FL~el~~il~~~~~~~f~~ 293 (409)
T PF01603_consen 220 KVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVI-----KGLLKHWPK-TNSQKEVLFLNELEEILEVLPPEEFQK 293 (409)
T ss_dssp HTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHH-----HHHHHHS-S-S-HHHHHHHHHHHHHHHTT--HHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHH-----HHHHHhCCC-CCchhHHHHHHHHHHHHHhcCHHHHHH
Confidence 334455554432 3345566677777777777665543 334444332 343445566777888887655543333
Q ss_pred HhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCC---cHHHHHHhccCC--CCCChhHHHHHHHHHHH
Q psy14164 223 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG---MVEQMCVLIDIE--DALDTEMNEHLLSALAS 297 (361)
Q Consensus 223 ~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g---~i~~Lv~lL~~~--~~~d~~~~e~al~aL~~ 297 (361)
+....+..+..+++|.+.+|-.+|+.++.+ +..... +... +++.+..-|... +.=+..++..+..++..
T Consensus 294 i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~l-i~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~ 367 (409)
T PF01603_consen 294 IMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLSL-ISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKI 367 (409)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHHH-HHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHHH-HHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 335567888999999999999999876442 222322 2222 466666665442 01167899999999999
Q ss_pred HHhcChHHHHhhc
Q psy14164 298 LIKDSPEAQSLCR 310 (361)
Q Consensus 298 L~~~~~~~~~~~~ 310 (361)
+...+++..+.|.
T Consensus 368 l~~~d~~lf~~~~ 380 (409)
T PF01603_consen 368 LMEMDPKLFDKCA 380 (409)
T ss_dssp HHTTSHHHHHHHH
T ss_pred HHHhCHHHHHHHH
Confidence 9999998888773
No 300
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=66.35 E-value=67 Score=25.77 Aligned_cols=69 Identities=19% Similarity=0.226 Sum_probs=52.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-HHHHHHHHhcChHHHHHHh-----hccCCCHHHHHHHHHHHHHH
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLLTS-----IEHDSNTTVQVKSLYAVSCL 211 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn-~~~q~~v~~~g~l~~Ll~L-----L~~~~~~~v~~~Al~ALS~l 211 (361)
+..|.+-|.+.++.+.-.|+.+|-.+++|. +.++..+.....+-.+++. ...+.+..||.++...+...
T Consensus 39 ~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 39 VDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 555666678889999999999999999985 5677778777777777653 12234678999998887654
No 301
>KOG3665|consensus
Probab=66.06 E-value=1.3e+02 Score=32.62 Aligned_cols=174 Identities=16% Similarity=0.108 Sum_probs=100.0
Q ss_pred HHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCC--hhhH--HHHHhhCcHHHHHHhhccC-
Q psy14164 164 TVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVREN--EECL--KEFIKRDGFSVLLRCIQSK- 238 (361)
Q Consensus 164 ~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~--~~~~--~~f~~~ggi~~Lv~lL~s~- 238 (361)
+|-+++.++|..-..+++.|++..+...+..-....++.+++.-+.+++.-. .+.. ..+++. ..+-..+..-
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~---~~f~~~~~~w~ 570 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDF---SVFKVLLNKWD 570 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH---HHHHHHHhhcc
Confidence 5668899999999999999999999999986556789999999999988642 1221 122222 2222233322
Q ss_pred CHHHHHHHHHHHHHHhcCCc-----------------------hHHHHHHhCCcHHH-HHHhccCCCCCChhHHHHHHHH
Q psy14164 239 KEKLVIKSCFLIACLCTDNN-----------------------QVKQVLLSMGMVEQ-MCVLIDIEDALDTEMNEHLLSA 294 (361)
Q Consensus 239 ~~~v~~kA~~ll~~L~~~~~-----------------------~~~~~l~~~g~i~~-Lv~lL~~~~~~d~~~~e~al~a 294 (361)
+...--.|+..++.++...+ ...........+.+ +..++..+. .+..+--|+++
T Consensus 571 ~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~--~~g~~lWal~t 648 (699)
T KOG3665|consen 571 SIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSK--SDGSQLWALWT 648 (699)
T ss_pred hhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccC--CCchHHHHHHH
Confidence 32555556666666665421 11111222233333 444554431 45666778888
Q ss_pred HHHHHhcChHHHHhhccCcchHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHhc
Q psy14164 295 LASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNSVLTEVF 348 (361)
Q Consensus 295 L~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~~~~e~~~e~~~~~~il~~~f 348 (361)
+.++++..++-....+..+ .+ ..+.++..+.+..+..+.+..+++.+.
T Consensus 649 i~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 649 IKNVLEQNKEYCKLVRESN-GF-----ELIENIRVLSEVVDVKEEAVLVIESCE 696 (699)
T ss_pred HHHHHHcChhhhhhhHhcc-ch-----hhhhhcchhHHHHHHHHHHHHHhhccc
Confidence 8888888775222111111 11 333444434344555556666666554
No 302
>KOG0413|consensus
Probab=66.05 E-value=29 Score=38.50 Aligned_cols=109 Identities=10% Similarity=0.161 Sum_probs=82.9
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHH
Q psy14164 184 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQV 263 (361)
Q Consensus 184 ~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~ 263 (361)
++..+++-++.+....+++.|+.-+-+...++... ..|- .|+.+|..+..+.-..+++++|..++.+...+|-..
T Consensus 577 V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~-~~fe--~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~-- 651 (1529)
T KOG0413|consen 577 VVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEA-SKFE--VVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLF-- 651 (1529)
T ss_pred HHHHHHHHhccCCCcccchhhHHHHHHHHhccchh-hcch--hHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhh--
Confidence 66777777775556689999999888888776543 2332 348888888888889999999999999888776443
Q ss_pred HHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q psy14164 264 LLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK 300 (361)
Q Consensus 264 l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~ 300 (361)
-++..++..|+.++... +..+.++|+..|..++.
T Consensus 652 ~~~~~wl~~li~~~~d~---es~v~e~a~~~i~k~l~ 685 (1529)
T KOG0413|consen 652 SLSSKWLHTLISMLNDT---ESDVTEHARKLIMKVLT 685 (1529)
T ss_pred hhhHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHh
Confidence 23556788888888887 88999999887666554
No 303
>KOG2073|consensus
Probab=63.41 E-value=22 Score=38.96 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=50.9
Q ss_pred ccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHH--hhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHH
Q psy14164 132 DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI--VQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVS 209 (361)
Q Consensus 132 dna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~i--aqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS 209 (361)
+.-..|.++-|++.|+.+| ++++++- ..-+..+.+++-+...++.|+.++....++.++.+|-..|+
T Consensus 148 ~~v~~~l~hi~~stlMD~L-----------lkli~~de~~~p~~~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~ 216 (838)
T KOG2073|consen 148 NFVDLFLKHIDISTLMDFL-----------LKLISTDEPESPRTDVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLC 216 (838)
T ss_pred HHHHHHHHHcCccHHHHHH-----------HHhccccCCCCchHHHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHH
Confidence 3344566666777777754 2333221 11224566777788899999999997777899999999999
Q ss_pred HHhcC
Q psy14164 210 CLVRE 214 (361)
Q Consensus 210 ~l~r~ 214 (361)
.|+|.
T Consensus 217 ~iv~~ 221 (838)
T KOG2073|consen 217 AIVRL 221 (838)
T ss_pred HHHhc
Confidence 99996
No 304
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=62.60 E-value=1.9e+02 Score=29.59 Aligned_cols=103 Identities=16% Similarity=0.084 Sum_probs=59.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHH-HHHhh-cCCCHHHHHHH
Q psy14164 84 FLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPV-LQPLL-EGSDPELRWRA 161 (361)
Q Consensus 84 ~L~eal~~~~~~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~-Lv~LL-~s~~~~vr~~A 161 (361)
-|.+++..+..+.+..+=.+...|..+..+.+.+..+++-|..+++..+..- |+... +.+.+ .+..++.-..-
T Consensus 13 ~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~-----~~~R~~fF~~I~~~~~~~d~~~~ 87 (464)
T PF11864_consen 13 ELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSS-----GLMRAEFFRDISDPSNDDDFDLR 87 (464)
T ss_pred HHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcccccc-----HHHHHHHHHHHhcCCCchhHHHH
Confidence 3445565555666766667777777777778899999999999998766421 11111 12222 23333333334
Q ss_pred HHHHHHHhhcCHHHHHHHHhcChHHHHHHhhc
Q psy14164 162 AETVADIVQNNPFSQNFIIQTDFLNLLLTSIE 193 (361)
Q Consensus 162 a~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~ 193 (361)
+.+|..++.+.-.. ...+.+.+|.|..-+.
T Consensus 88 l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~ 117 (464)
T PF11864_consen 88 LEALIALTDNGRDI--DFFEYEIGPFLLSWLE 117 (464)
T ss_pred HHHHHHHHcCCcCc--hhcccchHHHHHHHHH
Confidence 44455555554444 2355666777666554
No 305
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=62.15 E-value=2.4e+02 Score=30.80 Aligned_cols=88 Identities=11% Similarity=0.108 Sum_probs=61.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEF 222 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f 222 (361)
++.++..++++.--+|.+||..++.+... ..+..+-..+......++.+ .+-.|+..|+-||++++++. +....
T Consensus 462 v~hv~P~f~s~ygfL~Srace~is~~eeD---fkd~~ill~aye~t~ncl~n-n~lpv~ieAalAlq~fi~~~--q~h~k 535 (970)
T COG5656 462 VNHVIPAFRSNYGFLKSRACEFISTIEED---FKDNGILLEAYENTHNCLKN-NHLPVMIEAALALQFFIFNE--QSHEK 535 (970)
T ss_pred HHHhhHhhcCcccchHHHHHHHHHHHHHh---cccchHHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHHhch--hhhHH
Confidence 56667778899999999999999998432 33333334456666777776 56689999999999999976 33344
Q ss_pred HhhCcHHHHHHhhc
Q psy14164 223 IKRDGFSVLLRCIQ 236 (361)
Q Consensus 223 ~~~ggi~~Lv~lL~ 236 (361)
..+...+..-.+|.
T Consensus 536 ~sahVp~tmekLLs 549 (970)
T COG5656 536 FSAHVPETMEKLLS 549 (970)
T ss_pred HHhhhhHHHHHHHH
Confidence 44555555444543
No 306
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=62.06 E-value=1.8e+02 Score=29.23 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhhcCccc--HHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhcc
Q psy14164 117 CIGALDNLSDYICSIDY--ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH 194 (361)
Q Consensus 117 ~~~Al~~L~~lve~idn--a~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~ 194 (361)
..-..+.|..++++.+. +..+....-+..|+.++.|+++.=|.....+|-.+-...+..+..+.. .....|.+.+..
T Consensus 107 L~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e 185 (409)
T PF01603_consen 107 LQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYE 185 (409)
T ss_dssp HHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcC
Confidence 34455666777776554 223333344778899999999999999999999998877777665543 466667777765
Q ss_pred CCCHHHHHHHHHHHHHHhcCCh
Q psy14164 195 DSNTTVQVKSLYAVSCLVRENE 216 (361)
Q Consensus 195 ~~~~~v~~~Al~ALS~l~r~~~ 216 (361)
..........+.-++++++|..
T Consensus 186 ~~~~~gI~elLeil~sii~gf~ 207 (409)
T PF01603_consen 186 TERHNGIAELLEILGSIINGFA 207 (409)
T ss_dssp TS--STHHHHHHHHHHHHTT--
T ss_pred cccccCHHHHHHHHHHHHhccC
Confidence 4455667788899999998865
No 307
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=61.81 E-value=45 Score=32.42 Aligned_cols=62 Identities=18% Similarity=0.297 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHhcC--hHHHHHHhhccC--CCHHHHHHHHHHHHHHhcCChhh
Q psy14164 156 ELRWRAAETVADIVQNNPFSQNFIIQTD--FLNLLLTSIEHD--SNTTVQVKSLYAVSCLVRENEEC 218 (361)
Q Consensus 156 ~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g--~l~~Ll~LL~~~--~~~~v~~~Al~ALS~l~r~~~~~ 218 (361)
.+|-.|..++..+. .++..+..++..+ .+.-|+.++..+ -+..+|..|+.+|.+|+.+....
T Consensus 237 ~iRllAi~~l~~~~-~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~ 302 (329)
T PF06012_consen 237 QIRLLAIANLVYIH-PESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRC 302 (329)
T ss_pred HHHHHHHHHHHhhC-CCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccH
Confidence 45656666665555 5667777888887 999999999853 34689999999999999965443
No 308
>KOG2549|consensus
Probab=61.73 E-value=2.1e+02 Score=29.97 Aligned_cols=126 Identities=19% Similarity=0.193 Sum_probs=82.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCC-------CHHHHHHHHHHHHHHhcCC
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS-------NTTVQVKSLYAVSCLVREN 215 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~-------~~~v~~~Al~ALS~l~r~~ 215 (361)
+.-++..+.+.++..|..|+..|.+ ++..|+ .+|.++..+.... +..+-...+..+.+|.. |
T Consensus 209 y~~It~a~~g~~~~~r~eAL~sL~T----DsGL~~------LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~-N 277 (576)
T KOG2549|consen 209 YKEITEACTGSDEPLRQEALQSLET----DSGLQQ------LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD-N 277 (576)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhcc----CccHHH------HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc-C
Confidence 3445565666888888888888774 555554 5788888887542 22344445555555554 6
Q ss_pred hhhHHHHHhhCcHHHHHHhhccC----------CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCC
Q psy14164 216 EECLKEFIKRDGFSVLLRCIQSK----------KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE 280 (361)
Q Consensus 216 ~~~~~~f~~~ggi~~Lv~lL~s~----------~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~ 280 (361)
+...-.-+-+-.+|.++.|+-+. ...+|--|+.++..++......... +..-++..+.+.|...
T Consensus 278 p~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~ 351 (576)
T KOG2549|consen 278 PNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDN 351 (576)
T ss_pred CccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCC
Confidence 66655555577888888887542 3458999999999999875544444 3445666677766644
No 309
>KOG1078|consensus
Probab=61.46 E-value=2.3e+02 Score=30.95 Aligned_cols=74 Identities=18% Similarity=0.331 Sum_probs=58.6
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHH
Q psy14164 228 FSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQS 307 (361)
Q Consensus 228 i~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~ 307 (361)
++.|-.+|.++..-+..+|+.++.+|-...+..... .+..|--+++++ ..-+|=.|.++|..++...|+++.
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p-----avs~Lq~flssp---~~~lRfaAvRtLnkvAm~~P~~v~ 318 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP-----AVSVLQLFLSSP---KVALRFAAVRTLNKVAMKHPQAVT 318 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch-----HHHHHHHHhcCc---HHHHHHHHHHHHHHHHHhCCcccc
Confidence 345566777889999999999999997654332222 566677778888 889999999999999999999886
Q ss_pred hh
Q psy14164 308 LC 309 (361)
Q Consensus 308 ~~ 309 (361)
-|
T Consensus 319 ~c 320 (865)
T KOG1078|consen 319 VC 320 (865)
T ss_pred cc
Confidence 66
No 310
>KOG1525|consensus
Probab=60.62 E-value=25 Score=40.32 Aligned_cols=149 Identities=16% Similarity=0.212 Sum_probs=92.2
Q ss_pred CCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhH
Q psy14164 140 MGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECL 219 (361)
Q Consensus 140 ~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~ 219 (361)
.|.+|.|..=|.+++..+|..|..++|-+.+... ++-.=-.-......+.-+. +.+..||.+++-.++.+..++|...
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~-~~l~~~~~~~~~~fl~r~~-D~~~~vR~~~v~~~~~~l~~~~~~~ 335 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKD-SQLSETYDDLWSAFLGRFN-DISVEVRMECVESIKQCLLNNPSIA 335 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcch-hhhcccchHHHHHHHHHhc-cCChhhhhhHHHHhHHHHhcCchhh
Confidence 4678888888889999999999999999987543 2322001123344444444 3567999999999998888777654
Q ss_pred HHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164 220 KEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 299 (361)
Q Consensus 220 ~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~ 299 (361)
.... -...+ ...+.|++++.+..-++.-... ....-.++.. .+..+.+.+... ...+|..|+..|..+-
T Consensus 336 ~~~~---~~~~l--~~~~~D~~~rir~~v~i~~~~v--~~~~l~~~~~-ll~~~~eR~rDK---k~~VR~~Am~~LaqlY 404 (1266)
T KOG1525|consen 336 KAST---ILLAL--RERDLDEDVRVRTQVVIVACDV--MKFKLVYIPL-LLKLVAERLRDK---KIKVRKQAMNGLAQLY 404 (1266)
T ss_pred hHHH---HHHHH--HhhcCChhhhheeeEEEEEeeh--hHhhhhhhHH-HHHHHHHHHhhh---hHHHHHHHHHHHHHHH
Confidence 4332 11122 2233455555443322221110 1122222223 666677777776 8899999999998888
Q ss_pred hc
Q psy14164 300 KD 301 (361)
Q Consensus 300 ~~ 301 (361)
++
T Consensus 405 k~ 406 (1266)
T KOG1525|consen 405 KN 406 (1266)
T ss_pred HH
Confidence 74
No 311
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=60.58 E-value=87 Score=25.13 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=48.5
Q ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCH
Q psy14164 100 LEKIIKTLKE--NQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEG--SDPELRWRAAETVADIVQNNP 173 (361)
Q Consensus 100 mk~~l~~L~~--~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s--~~~~vr~~Aa~~Lg~iaqnn~ 173 (361)
|...-..+.+ ...+..+|..++..+.++++-.. ..+ ....|.+..+|++ ..++++..|+.+....+++-+
T Consensus 13 l~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~--~~i--~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~ 86 (107)
T PF08064_consen 13 LTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGG--SHI--SSARPQIMACLQSALEIPELREEALSCWNCFIKTLD 86 (107)
T ss_pred HHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhH--HHH--HHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCC
Confidence 3444444555 34567899999999999987221 121 1347778888875 566999999999998887644
No 312
>PRK14707 hypothetical protein; Provisional
Probab=60.16 E-value=4e+02 Score=32.83 Aligned_cols=149 Identities=16% Similarity=0.149 Sum_probs=95.9
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy14164 143 LPVLQPLLEG-SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKE 221 (361)
Q Consensus 143 ~~~Lv~LL~s-~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~ 221 (361)
+..+++-|+. ++..+-..|+..|+.-.-..+...+. ++.-++...+.-|+.=++..+...|+.+|..=+-+.+.-.+.
T Consensus 333 ~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~-l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~ 411 (2710)
T PRK14707 333 LSTALNALSKWPDNPVCAAAVSALAERLVADPELRKD-LEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKG 411 (2710)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcc-cchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhh
Confidence 4444554433 66666666666666655555655544 445567777787776667778888888888766666666555
Q ss_pred HHhhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccC-CCCCChhHHHHHHHHHHH
Q psy14164 222 FIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDI-EDALDTEMNEHLLSALAS 297 (361)
Q Consensus 222 f~~~ggi~~Lv~lL~s-~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~d~~~~e~al~aL~~ 297 (361)
| +.-|+.-+++.|+. ++..+...++..+.--+..+++.+..+--.++...| +-|+. + |+.+...+...|..
T Consensus 412 ~-~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~L-nalSKWP---d~p~c~~aa~~La~ 484 (2710)
T PRK14707 412 L-DPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQAL-DALSKWP---DTPICGQTASALAA 484 (2710)
T ss_pred c-chhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHH-HHhhcCC---CChhHHHHHHHHHH
Confidence 5 56677777777765 688888888888887777777777766555544433 33333 3 55555444444433
No 313
>KOG4464|consensus
Probab=60.01 E-value=1.1e+02 Score=31.09 Aligned_cols=115 Identities=13% Similarity=0.005 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCC-----CCChhHHHHHHHHHHHHHhcChHHHHhhccC
Q psy14164 238 KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIED-----ALDTEMNEHLLSALASLIKDSPEAQSLCRLE 312 (361)
Q Consensus 238 ~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~-----~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~ 312 (361)
++..|..++.-++.|++.+++..++.+.+...+..+++.+.... ....-+.-..|..|..+-.....++..--.+
T Consensus 109 ~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~G 188 (532)
T KOG4464|consen 109 ADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLG 188 (532)
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 36788889999999999998888999999888888887764430 0111222333333333332222222221111
Q ss_pred cchHHHHHHHHHHh---hcChhhhHHHHHHHHHHHHHhcCCCC
Q psy14164 313 PLNLKFKLNFIKEK---HAGNEVYHKELEYVNSVLTEVFEEDS 352 (361)
Q Consensus 313 ~l~l~~~Le~~~~~---l~~~~e~~~e~~~~~~il~~~f~~~~ 352 (361)
.--+.+||++.... +.....+.++.+.+-.+|+.||...-
T Consensus 189 l~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~ 231 (532)
T KOG4464|consen 189 LELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTC 231 (532)
T ss_pred cHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheee
Confidence 11334566554431 11222455888999999999998544
No 314
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=59.65 E-value=32 Score=26.52 Aligned_cols=50 Identities=16% Similarity=0.331 Sum_probs=39.4
Q ss_pred cChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhc
Q psy14164 182 TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQ 236 (361)
Q Consensus 182 ~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~ 236 (361)
...+.|+..++.+.++..+|...+.+|..++..+... + ..||+.+...|.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~---i--~SGW~~if~il~ 65 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGEN---I--KSGWKVIFSILR 65 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHH---H--HhccHHHHHHHH
Confidence 3468889998877678899999999999999754432 2 468999988876
No 315
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=59.25 E-value=1.8e+02 Score=28.42 Aligned_cols=20 Identities=5% Similarity=0.069 Sum_probs=14.8
Q ss_pred cCCCCHHhHHHHHHHHHhhc
Q psy14164 74 AASMNEANRGFLLDALNSMM 93 (361)
Q Consensus 74 ~~~~s~e~~~~L~eal~~~~ 93 (361)
.+.++++..+-|-.+|..+.
T Consensus 31 lk~L~~~ei~~l~~~m~~l~ 50 (338)
T TIGR00207 31 FKHLSQEEIETLSAEIANVT 50 (338)
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 55678777777777777776
No 316
>KOG1086|consensus
Probab=58.99 E-value=2.1e+02 Score=29.11 Aligned_cols=116 Identities=14% Similarity=0.089 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHHHhcCCc------hHHHHHHhCCcHH-------------------------------HHHHhccCC
Q psy14164 238 KKEKLVIKSCFLIACLCTDNN------QVKQVLLSMGMVE-------------------------------QMCVLIDIE 280 (361)
Q Consensus 238 ~~~~v~~kA~~ll~~L~~~~~------~~~~~l~~~g~i~-------------------------------~Lv~lL~~~ 280 (361)
.+.+|+.|..-++..-.-.-+ +..+.+..+|+|. .|..||++.
T Consensus 106 tSekvKtkiIelLfsWtv~lpe~~KikdaYqmLKkqgIik~DP~lp~d~~~~p~ppP~pkssvFddEEksklL~rLLkSn 185 (594)
T KOG1086|consen 106 TSEKVKTKIIELLFSWTVSLPEEPKIKDAYQMLKKQGIIKSDPKLPVDETPVPAPPPRPKSSVFDDEEKSKLLARLLKSN 185 (594)
T ss_pred hhHHHHHHHHHHHhhheecCcccchHHHHHHHHHhcCcccCCCCCCCCCccCCCCCCCCCccccCcHHHHHHHHHHHhcC
Confidence 478999999888876554322 2233444555543 267788877
Q ss_pred CCCChhHHHHHHHHHHHHHhcChHHHHhh-ccCc-----chHHHHHHHHHHh-hc-----Chh--hhHHHHHHHHHHHHH
Q psy14164 281 DALDTEMNEHLLSALASLIKDSPEAQSLC-RLEP-----LNLKFKLNFIKEK-HA-----GNE--VYHKELEYVNSVLTE 346 (361)
Q Consensus 281 ~~~d~~~~e~al~aL~~L~~~~~~~~~~~-~~~~-----l~l~~~Le~~~~~-l~-----~~~--e~~~e~~~~~~il~~ 346 (361)
+++-.+.|-..+.++++......+.. +.-. ......|++..-. -+ ..+ -.++.|+.|.++-.+
T Consensus 186 ---~PeDLqaANkLIK~lVkeee~k~eKiskR~~aleev~n~vk~l~em~l~~s~eg~a~pd~E~~lq~v~~~ce~lr~t 262 (594)
T KOG1086|consen 186 ---HPEDLQAANKLIKTLVKEEEHKLEKISKRVKALEEVNNNVKLLEEMLLDYSQEGNASPDNELLLQEVYNRCEQLRPT 262 (594)
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 77777778888888887654322211 0000 0112223322211 11 122 246679999999999
Q ss_pred hcCCCCCccc
Q psy14164 347 VFEEDSPEEF 356 (361)
Q Consensus 347 ~f~~~~~~~~ 356 (361)
+|+--++++.
T Consensus 263 lfrlaset~d 272 (594)
T KOG1086|consen 263 LFRLASETED 272 (594)
T ss_pred HHHhhccccc
Confidence 9997776643
No 317
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=58.67 E-value=40 Score=29.18 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCCh
Q psy14164 158 RWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENE 216 (361)
Q Consensus 158 r~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~ 216 (361)
+..|...||+|..+- -+.+|+.+|.+ .+..+...|+-+|++.+--+.
T Consensus 80 ~~~Av~LLGtM~GGY-----------NV~~LI~~L~~-~d~~lA~~Aa~aLk~TlLvyD 126 (154)
T PF11791_consen 80 PAEAVELLGTMLGGY-----------NVQPLIDLLKS-DDEELAEEAAEALKNTLLVYD 126 (154)
T ss_dssp HHHHHHHHTTS-SST-----------THHHHHHGG---G-TTTHHHHHHHHHT--TTCC
T ss_pred HHHHHHHHhhccCCC-----------cHHHHHHHHcC-CcHHHHHHHHHHHHhhHHHHh
Confidence 566777777775431 26778888865 345788888888887654443
No 318
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=57.60 E-value=1.4e+02 Score=26.44 Aligned_cols=162 Identities=12% Similarity=0.094 Sum_probs=90.4
Q ss_pred HHhHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcC-CCHHH
Q psy14164 79 EANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEG-SDPEL 157 (361)
Q Consensus 79 ~e~~~~L~eal~~~~~~~~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s-~~~~v 157 (361)
|+.|+..+........+ +.+.+.+..|-.. ..-|.+..|+..+.......+.. .++.+-.++.. ++-.+
T Consensus 33 p~lr~lak~~~~~~~~~--~~~~~l~~~L~~~-~~~E~~~la~~il~~~~~~~~~~-------~~~~~~~~~~~~~~W~~ 102 (213)
T PF08713_consen 33 PDLRKLAKDIYKELKLS--EELYELADELWES-GYREERYLALLILDKRRKKLTEE-------DLELLEKWLPDIDNWAT 102 (213)
T ss_dssp HHHHHHHHHHHHHHCTS--HHHHHHHHHHHCS-SCHHHHHHHHHHHHHCGGG--HH-------HHHHHHHCCCCCCCHHH
T ss_pred HHHHHHHHHHHhhcccc--hHHHHHHHHHcCC-chHHHHHHHHHHhHHHhhhhhHH-------HHHHHHHHhccCCcchh
Confidence 44555555555544333 3333334444332 33577777777665544322211 24444455543 44444
Q ss_pred HHHH-HHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhc
Q psy14164 158 RWRA-AETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQ 236 (361)
Q Consensus 158 r~~A-a~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~ 236 (361)
.... ..+++.+.... ....+.+.+.+.+ .+.-+|+.++-++...++.. ... ..+..+...+.
T Consensus 103 ~D~~~~~~~~~~~~~~---------~~~~~~~~~W~~s-~~~w~rR~~~v~~~~~~~~~--~~~-----~~l~~~~~~~~ 165 (213)
T PF08713_consen 103 CDSLCSKLLGPLLKKH---------PEALELLEKWAKS-DNEWVRRAAIVMLLRYIRKE--DFD-----ELLEIIEALLK 165 (213)
T ss_dssp HHHHTHHHHHHHHHHH---------GGHHHHHHHHHHC-SSHHHHHHHHHCTTTHGGGC--HHH-----HHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHhh---------HHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHhc--CHH-----HHHHHHHHHcC
Confidence 4333 55556554322 3356666667775 57788888877766655541 111 12345555677
Q ss_pred cCCHHHHHHHHHHHHHHhcCCchHHHHHHhC
Q psy14164 237 SKKEKLVIKSCFLIACLCTDNNQVKQVLLSM 267 (361)
Q Consensus 237 s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~ 267 (361)
+++.-||.-+.|+|..+...+++....++..
T Consensus 166 d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 166 DEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp GS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 8899999999999999999888776666554
No 319
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=57.42 E-value=98 Score=24.73 Aligned_cols=88 Identities=16% Similarity=0.219 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHH
Q psy14164 153 SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLL 232 (361)
Q Consensus 153 ~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv 232 (361)
+.+.|...+.|++.+.- ... ..+..+.+.+.. ..+.-+-.++|.+-.++++.......+......+.+.
T Consensus 17 S~~~I~~lt~~a~~~~~-----~a~-----~iv~~i~~~i~~-~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~ 85 (114)
T cd03562 17 SQPSIQTLTKLAIENRK-----HAK-----EIVEIIEKHIKK-CPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFL 85 (114)
T ss_pred cHHHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHHHh-CCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 67788888888888762 112 244455556655 3447888999999999998655555555556688888
Q ss_pred HhhccCCHHHHHHHHHHHH
Q psy14164 233 RCIQSKKEKLVIKSCFLIA 251 (361)
Q Consensus 233 ~lL~s~~~~v~~kA~~ll~ 251 (361)
......+.++|.|..-++.
T Consensus 86 ~~~~~~~~~~r~kl~rl~~ 104 (114)
T cd03562 86 DAYEKVDEKTRKKLERLLN 104 (114)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 8888888999888776554
No 320
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=57.39 E-value=31 Score=29.74 Aligned_cols=127 Identities=13% Similarity=0.265 Sum_probs=85.5
Q ss_pred hcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcC--ChhhHHHHHhhCcHHHHHHh-hccCCHHHHHHH
Q psy14164 170 QNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRE--NEECLKEFIKRDGFSVLLRC-IQSKKEKLVIKS 246 (361)
Q Consensus 170 qnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~--~~~~~~~f~~~ggi~~Lv~l-L~s~~~~v~~kA 246 (361)
||++..=+.+.+...+..+++++.......++...+..+|=+..+ ++....-+...+-+.-++.. +.-.+..+..-=
T Consensus 13 q~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yY 92 (149)
T PF09758_consen 13 QNDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYY 92 (149)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHH
Confidence 678889999999999999999999866779999999999988765 33344444556666655544 333466677766
Q ss_pred HHHHHHHhcC-CchHHHHHHh-----CCcHHHHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164 247 CFLIACLCTD-NNQVKQVLLS-----MGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 299 (361)
Q Consensus 247 ~~ll~~L~~~-~~~~~~~l~~-----~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~ 299 (361)
..++..|+-. +++....+.. .-....-++++.++ |.-+|..+-..+.++.
T Consensus 93 IsfLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~---d~Mvr~avR~i~Lni~ 148 (149)
T PF09758_consen 93 ISFLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHP---DSMVRTAVRTITLNIY 148 (149)
T ss_pred HHHHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCc---chHHHHHHHHHHHhhc
Confidence 6777777643 3333333332 12344556777777 7777777666665553
No 321
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=56.92 E-value=44 Score=32.77 Aligned_cols=100 Identities=21% Similarity=0.259 Sum_probs=59.5
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCC------CHHHHHHHHHHHHHHhcCChhhH
Q psy14164 146 LQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS------NTTVQVKSLYAVSCLVRENEECL 219 (361)
Q Consensus 146 Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~------~~~v~~~Al~ALS~l~r~~~~~~ 219 (361)
++..+.+++...|..|+..|. .+|..++ .+|.+++.+...- +.......+..+.+|+. |+...
T Consensus 183 It~a~~~~~~~~r~~aL~sL~----tD~gl~~------LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~-N~~l~ 251 (343)
T cd08050 183 ITEALVGSNEEKRREALQSLR----TDPGLQQ------LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD-NPNLH 251 (343)
T ss_pred HHHHHhCCCHHHHHHHHHHhc----cCCCchh------hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc-CCCCc
Confidence 333333456666666655544 3444443 6788888876431 23344445555556665 44443
Q ss_pred HHHHhhCcHHHHHHhhcc----------CCHHHHHHHHHHHHHHhcC
Q psy14164 220 KEFIKRDGFSVLLRCIQS----------KKEKLVIKSCFLIACLCTD 256 (361)
Q Consensus 220 ~~f~~~ggi~~Lv~lL~s----------~~~~v~~kA~~ll~~L~~~ 256 (361)
-..+-+--+|.++.|+-+ .+..+|..|+.+++.++..
T Consensus 252 le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~ 298 (343)
T cd08050 252 LEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRK 298 (343)
T ss_pred hHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 344445578888877732 3468899999988888865
No 322
>KOG1087|consensus
Probab=56.04 E-value=41 Score=34.51 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=58.0
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q psy14164 227 GFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK 300 (361)
Q Consensus 227 gi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~ 300 (361)
.+..|.+-+++...+++.-|+.+|--++.+ +..+...+.+.+++.-+|.+.+.. ..+..+|+++|..|..-.+
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~-~~~~~Vr~kiL~LI~~W~~ 112 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNK-PRDLKVREKILELIDTWQQ 112 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccC-CcchhHHHHHHHHHHHHHH
Confidence 344666677777889999999988877776 667778899999999999888754 2478999999999866554
No 323
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=55.70 E-value=73 Score=30.98 Aligned_cols=56 Identities=25% Similarity=0.382 Sum_probs=43.1
Q ss_pred HHHHHh--cCCchHHHHHHhCC--cHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChH
Q psy14164 249 LIACLC--TDNNQVKQVLLSMG--MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPE 304 (361)
Q Consensus 249 ll~~L~--~~~~~~~~~l~~~g--~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~ 304 (361)
+|++++ ...+.....+...+ ++..|+++|+.+......++..|+.+|..|+...+.
T Consensus 242 Ai~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~ 301 (329)
T PF06012_consen 242 AIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPR 301 (329)
T ss_pred HHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhcccc
Confidence 455553 33556777777777 999999999987555678999999999999986653
No 324
>KOG2676|consensus
Probab=55.53 E-value=12 Score=36.86 Aligned_cols=64 Identities=11% Similarity=0.076 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCChhhHHHHHhhCcHHHHHHhh--ccCCHHHHHHHHHHHHHHhcCCchHHHHHHhC
Q psy14164 204 SLYAVSCLVRENEECLKEFIKRDGFSVLLRCI--QSKKEKLVIKSCFLIACLCTDNNQVKQVLLSM 267 (361)
Q Consensus 204 Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL--~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~ 267 (361)
.+.-|+++|..++.++..+.+.||++.++.-. .+.++-++.....++..|+.++.+.++++-++
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 55688999999999999999999999887653 34589999999999999999877766665443
No 325
>KOG2933|consensus
Probab=55.22 E-value=98 Score=30.07 Aligned_cols=111 Identities=13% Similarity=0.219 Sum_probs=69.4
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHH
Q psy14164 185 LNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVL 264 (361)
Q Consensus 185 l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l 264 (361)
+...+..|.+ .+=..+...+..|.++++-++.....-+ +-.+-.+++-+++.-..|-+-||.+++.+.+.-......
T Consensus 90 l~~~l~~L~s-~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~- 166 (334)
T KOG2933|consen 90 LKQALKKLSS-DDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ- 166 (334)
T ss_pred HHHHHHHhch-HHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3334555654 3557778888888888887665544433 334556677788888889999999999988752222222
Q ss_pred HhCCcHHH-HHHhccCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164 265 LSMGMVEQ-MCVLIDIEDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 265 ~~~g~i~~-Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
.+.. ++.||.....++.-+++-|..+|..++..-
T Consensus 167 ----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~v 201 (334)
T KOG2933|consen 167 ----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHV 201 (334)
T ss_pred ----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhcc
Confidence 2333 344444432223457888888888877643
No 326
>KOG1832|consensus
Probab=55.16 E-value=1.1e+02 Score=34.08 Aligned_cols=220 Identities=14% Similarity=0.179 Sum_probs=109.2
Q ss_pred CCCCCHHHHHHHHhhcCCCCCCCCCCcccccCCCCHHhHHHH-HHHHHhhcCCHHHHHHHHHHHHhcCCC----------
Q psy14164 44 RQPSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFL-LDALNSMMVNVGAELEKIIKTLKENQD---------- 112 (361)
Q Consensus 44 ~~~~~l~~LL~w~~~~s~~~~~~~~~~~~~~~~~s~e~~~~L-~eal~~~~~~~~~~mk~~l~~L~~~~~---------- 112 (361)
+...+-..+-+-++..+.++++..+...++. .=+ +-.|+ ..++..+..++.++| +.++-.+.-.
T Consensus 240 ~~~~~~~~~~~r~~~~~~~e~~~~~~~~~~~-~gd--~~~~~~~~~~~~f~ss~~~~~--~~e~s~~~~s~~t~~v~~~~ 314 (1516)
T KOG1832|consen 240 RETKNITDLVKRAVGAAETERAHAPDDAAKA-AGD--AAAELVTAALEEFKSSGSEID--AAEVSRNVTSDQTTDVSEVS 314 (1516)
T ss_pred ecccchhhHHHHhhccCCccccCCCcchhhh-ccc--HHHHHHHHHHhhccCCCcchh--HHHHhcccccccCccccccc
Confidence 3455667788888888877765322100111 111 22233 345656654444322 2222222110
Q ss_pred -C-------HHHH--HHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhh----cCCCHHHHHHHHHHHHHHhhcCHHHHHH
Q psy14164 113 -Q-------KDIC--IGALDNLSDYICSIDYANDFLKMGGLPVLQPLL----EGSDPELRWRAAETVADIVQNNPFSQNF 178 (361)
Q Consensus 113 -~-------~~~~--~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL----~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~ 178 (361)
+ .++| +.-|+.|-+++|-+ -.|+..|. ..++-++ +-.+..+--.+...|+.++.+|... ..
T Consensus 315 ~~~~~~~~~~~~~~~~q~l~~lgey~e~l---pv~~~~g~-~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~kfa-~~ 389 (1516)
T KOG1832|consen 315 LPDIESLAQLQEKYCIQCLEILGEYVEVL---PVLHEKGV-DVCIVLLERTSQLDDSPLLPDVMKLICALAAHRKFA-AM 389 (1516)
T ss_pred cccccchHHHHHHHHHHHHHHHHhHHHHH---HHHHHhCc-hhhhhhhhhhhccccccccHHHHHHHHHHHHhhHHH-HH
Confidence 0 1222 23344444444422 34566653 3333332 2345667777888899888877654 46
Q ss_pred HHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh------hCcHHHHHHhhccCCHHHHHHHHHHHH-
Q psy14164 179 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIK------RDGFSVLLRCIQSKKEKLVIKSCFLIA- 251 (361)
Q Consensus 179 v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~------~ggi~~Lv~lL~s~~~~v~~kA~~ll~- 251 (361)
|++.|++..|+..-.-+....-...++|.||.+ ..+.+.+.. +..+..-+.+|......-+..++.+++
T Consensus 390 fv~~~gi~kll~vpr~s~~~~g~s~cly~~~~~----q~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~ff~~ 465 (1516)
T KOG1832|consen 390 FVERRGILKLLAVPRVSETFYGLSSCLYTIGSL----QGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALFFAA 465 (1516)
T ss_pred HHHhhhhHHHhcCCCchhhhhhHHHHHHHHhhh----hhHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHHHHHH
Confidence 788888888877665322223445677777764 223333332 233445566676554333333332222
Q ss_pred HHhcCCchHHHHHHhCCcHHHHHHhccC
Q psy14164 252 CLCTDNNQVKQVLLSMGMVEQMCVLIDI 279 (361)
Q Consensus 252 ~L~~~~~~~~~~l~~~g~i~~Lv~lL~~ 279 (361)
.+. -....+.|-.+..+..|+.+|+.
T Consensus 466 ~f~--frail~~fd~~d~l~~l~~~~~~ 491 (1516)
T KOG1832|consen 466 AFV--FRAILDAFDAQDSLQKLLAILKD 491 (1516)
T ss_pred HHH--HHHHHHHHhhhhHHHHHHHHHHH
Confidence 221 12333444455666777766653
No 327
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=54.68 E-value=31 Score=32.25 Aligned_cols=82 Identities=13% Similarity=0.153 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhhCcH-------HHHHHhhcc-CCHHHHHHHHHHHHHHhcCCchHH-HHHHhCC
Q psy14164 198 TTVQVKSLYAVSCLVRENEECLKEFIKRDGF-------SVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVK-QVLLSMG 268 (361)
Q Consensus 198 ~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi-------~~Lv~lL~s-~~~~v~~kA~~ll~~L~~~~~~~~-~~l~~~g 268 (361)
.+-|+-|+-+|+-|+- .+.+..-++..+.+ ..|+++|.. .+.-+|.-|.-++++|+.++.... ....+.+
T Consensus 138 lSPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 138 LSPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CCHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 4567888888888875 33445555555544 355666654 488999999999999999876655 4455778
Q ss_pred cHHHHHHhccCC
Q psy14164 269 MVEQMCVLIDIE 280 (361)
Q Consensus 269 ~i~~Lv~lL~~~ 280 (361)
.|..|+.+++..
T Consensus 217 ~i~~Li~FiE~a 228 (257)
T PF12031_consen 217 CISHLIAFIEDA 228 (257)
T ss_pred hHHHHHHHHHHH
Confidence 899999998864
No 328
>KOG4464|consensus
Probab=54.65 E-value=2.5e+02 Score=28.55 Aligned_cols=82 Identities=15% Similarity=0.221 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc--------CCHHHHHHHHHHHHHHhcCCchHHH-HHHh
Q psy14164 196 SNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS--------KKEKLVIKSCFLIACLCTDNNQVKQ-VLLS 266 (361)
Q Consensus 196 ~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s--------~~~~v~~kA~~ll~~L~~~~~~~~~-~l~~ 266 (361)
++..|...++-+|+|++-+++.++..|++..-...+.+.+.+ +..-.=.+-.|+++.| .+..|. .+.+
T Consensus 109 ~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltal---e~~~Rsql~~~ 185 (532)
T KOG4464|consen 109 ADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTAL---ETDHRSQLIAE 185 (532)
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHh---hHHHHHHHHHH
Confidence 345789999999999999999999999988766655554432 1222334556666655 334554 4557
Q ss_pred CCcHHHHHHhccCC
Q psy14164 267 MGMVEQMCVLIDIE 280 (361)
Q Consensus 267 ~g~i~~Lv~lL~~~ 280 (361)
.++++.+-+.|...
T Consensus 186 l~Gl~~lt~~led~ 199 (532)
T KOG4464|consen 186 LLGLELLTNWLEDK 199 (532)
T ss_pred hcccHHHHHHhhcc
Confidence 88889888888765
No 329
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=54.39 E-value=1.6e+02 Score=26.29 Aligned_cols=78 Identities=10% Similarity=0.197 Sum_probs=52.2
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHH
Q psy14164 184 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRE-NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQ 262 (361)
Q Consensus 184 ~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~-~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~ 262 (361)
.+|.++.=|.. .+.-.+--|...+.-|+.. .......++ .-.+.+|..+|.+.+..|...++.+|..|+...+..-.
T Consensus 39 ~Lpif~dGL~E-t~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 39 YLPIFFDGLRE-TEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred HHHHHHhhhhc-cCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 56666665554 3334555666667766665 444444444 34677888999999999999999999999776543333
Q ss_pred H
Q psy14164 263 V 263 (361)
Q Consensus 263 ~ 263 (361)
.
T Consensus 117 a 117 (183)
T PF10274_consen 117 A 117 (183)
T ss_pred H
Confidence 3
No 330
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=54.19 E-value=36 Score=35.16 Aligned_cols=163 Identities=10% Similarity=0.071 Sum_probs=98.7
Q ss_pred HHHHhhc--CCHHHHHHHHHHHHh--c--CC-----CCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCC--
Q psy14164 87 DALNSMM--VNVGAELEKIIKTLK--E--NQ-----DQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGS-- 153 (361)
Q Consensus 87 eal~~~~--~~~~~~mk~~l~~L~--~--~~-----~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~-- 153 (361)
+.|+.+. -+|...+.+.+..+. . ++ .+..-+...| ..|+.+.--++.| -..+..+...|.++
T Consensus 259 ~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL---~~L~kS~~Aa~~~--~~~~~i~~~~l~~~~~ 333 (501)
T PF13001_consen 259 DLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKIL---SLLSKSVIAATSF--PNILQIVFDGLYSDNT 333 (501)
T ss_pred HHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHH---HHHHHhHHHHhCC--ccHHHHHhccccCCcc
Confidence 4455554 356777777777777 2 11 1123344444 3344433322222 12344444566666
Q ss_pred CHHHHHHHHHHH---HHHhhcCHHHHHHHHhcChHHHHHHhhc-------cCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy14164 154 DPELRWRAAETV---ADIVQNNPFSQNFIIQTDFLNLLLTSIE-------HDSNTTVQVKSLYAVSCLVRENEECLKEFI 223 (361)
Q Consensus 154 ~~~vr~~Aa~~L---g~iaqnn~~~q~~v~~~g~l~~Ll~LL~-------~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~ 223 (361)
+..+|..+...+ ..+..+-+...-..+...++..+|.++. ...+...|..+--+|+.|++..|.... -
T Consensus 334 ~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~--~ 411 (501)
T PF13001_consen 334 NSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFS--K 411 (501)
T ss_pred ccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccccc--c
Confidence 778999998888 7776665554444444445555556662 123568999999999999998876531 1
Q ss_pred hhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC
Q psy14164 224 KRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD 256 (361)
Q Consensus 224 ~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~ 256 (361)
+.+-+..|...|...+..++..+--+++.|+..
T Consensus 412 d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 412 DLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred cHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 234566777777777788888877777777653
No 331
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=53.87 E-value=73 Score=32.96 Aligned_cols=81 Identities=23% Similarity=0.266 Sum_probs=59.1
Q ss_pred HHHHHCCCHHHHH-H---hhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHH
Q psy14164 135 NDFLKMGGLPVLQ-P---LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSC 210 (361)
Q Consensus 135 ~~~~~~Gg~~~Lv-~---LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~ 210 (361)
..++..||||.+- . =..+.+..+|..|-.+||.+++..|..= .-+.+.+.-|.+-|.. .+..++...-.|||+
T Consensus 364 ~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~--~~d~~li~~LF~sL~~-~~~evr~sIqeALss 440 (501)
T PF13001_consen 364 RPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLF--SKDLSLIEFLFDSLED-ESPEVRVSIQEALSS 440 (501)
T ss_pred HHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccc--cccHHHHHHHHHHhhC-cchHHHHHHHHHHHH
Confidence 3455567887771 0 1234678999999999999999988641 1245677788887754 567999999999999
Q ss_pred HhcCChhh
Q psy14164 211 LVRENEEC 218 (361)
Q Consensus 211 l~r~~~~~ 218 (361)
++..+...
T Consensus 441 l~~af~~~ 448 (501)
T PF13001_consen 441 LAPAFKDL 448 (501)
T ss_pred HHHHHhcc
Confidence 98765443
No 332
>KOG2549|consensus
Probab=52.56 E-value=3e+02 Score=28.87 Aligned_cols=133 Identities=14% Similarity=0.111 Sum_probs=80.1
Q ss_pred CCCHHhHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-----------------------HHHHHHHHHHHHHhhcCcc
Q psy14164 76 SMNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQ-----------------------KDICIGALDNLSDYICSID 132 (361)
Q Consensus 76 ~~s~e~~~~L~eal~~~~~~~~~~mk~~l~~L~~~~~~-----------------------~~~~~~Al~~L~~lve~id 132 (361)
-+|.|-.-+.++..+.++.++..++++++..|.+.+.= .+.....+....-|. +
T Consensus 200 ~LS~ElQlYy~~It~a~~g~~~~~r~eAL~sL~TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl---~ 276 (576)
T KOG2549|consen 200 VLSVELQLYYKEITEACTGSDEPLRQEALQSLETDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLL---D 276 (576)
T ss_pred hccHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHh---c
Confidence 36677778888887777777788999999999875410 111222222222222 4
Q ss_pred cHHHHHH---CCCHHHHHHhhcC----------CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccC-CCH
Q psy14164 133 YANDFLK---MGGLPVLQPLLEG----------SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD-SNT 198 (361)
Q Consensus 133 na~~~~~---~Gg~~~Lv~LL~s----------~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~-~~~ 198 (361)
|.+-|.. .-.+|.++.|+=+ .+-.+|..|+.+++.++.+-...-+. +.--++..|.+.|... .+.
T Consensus 277 Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~ 355 (576)
T KOG2549|consen 277 NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPL 355 (576)
T ss_pred CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCc
Confidence 4433221 1246777776543 23569999999999998876654444 4445666666666543 445
Q ss_pred HHHHHHHHHHHHHh
Q psy14164 199 TVQVKSLYAVSCLV 212 (361)
Q Consensus 199 ~v~~~Al~ALS~l~ 212 (361)
....-|+..|+.+.
T Consensus 356 st~YGai~gL~~lg 369 (576)
T KOG2549|consen 356 STHYGAIAGLSELG 369 (576)
T ss_pred hhhhhHHHHHHHhh
Confidence 66666666666653
No 333
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=51.34 E-value=18 Score=29.45 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHH
Q psy14164 203 KSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVI 244 (361)
Q Consensus 203 ~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~ 244 (361)
..+-.++.++. +|.-+..|++.|+++.|+.+|.+.+..+..
T Consensus 65 ~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 65 EEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 45556666665 678899999999999999999988766543
No 334
>KOG1822|consensus
Probab=51.08 E-value=75 Score=37.89 Aligned_cols=112 Identities=16% Similarity=0.132 Sum_probs=79.8
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy14164 142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKE 221 (361)
Q Consensus 142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~ 221 (361)
.+..++..|..+++..|..+..+++.++|--+. ...-++....+++-|.+..++..|.--.-|++++-|+.-.....
T Consensus 877 ~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~---~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 877 ALTLIVNSLINPNPKLRCAAAEALARLAQVVGS---APFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHHhhhhccCChHHHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 366667788889999999999999999985332 12223466777777777677788888889999998853322111
Q ss_pred HHhhCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcC
Q psy14164 222 FIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTD 256 (361)
Q Consensus 222 f~~~ggi~~Lv~lL~s~-~~~v~~kA~~ll~~L~~~ 256 (361)
=.-..++..|..+.+++ ++.||..+..+++.++..
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s 989 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDS 989 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcC
Confidence 11235677777777655 669999999998888765
No 335
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=50.96 E-value=2.5e+02 Score=27.56 Aligned_cols=120 Identities=13% Similarity=0.203 Sum_probs=81.8
Q ss_pred HHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhh-CcHHHHHHh-hc---c-C-CHHHHHHHHH
Q psy14164 176 QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKR-DGFSVLLRC-IQ---S-K-KEKLVIKSCF 248 (361)
Q Consensus 176 q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~-ggi~~Lv~l-L~---s-~-~~~v~~kA~~ 248 (361)
-+++++..++..|.++-..+.++.+|..++..++.++..... .|+.+ ....++.++ ++ . . ...+..+-+.
T Consensus 2 lEyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~---plL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~ 78 (353)
T PF10257_consen 2 LEYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQ---PLLPHRSVHRPLQRLLLRSCGESRSASPTEKELVE 78 (353)
T ss_pred hHHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhccc---ccccchhhhhhHHHHHHHHhCCCCCCchHHHHHHH
Confidence 467788899999999998888889999999999999875332 24433 344555555 43 2 2 4556666667
Q ss_pred HHHHHhc---CCchHHHHHHhC--------------------------CcHHHHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164 249 LIACLCT---DNNQVKQVLLSM--------------------------GMVEQMCVLIDIEDALDTEMNEHLLSALASLI 299 (361)
Q Consensus 249 ll~~L~~---~~~~~~~~l~~~--------------------------g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~ 299 (361)
++..+|. .+|.....+.+. .++..|+.++++. -.+-..|-.+|..++
T Consensus 79 lL~~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e----g~ig~~Are~LLll~ 154 (353)
T PF10257_consen 79 LLNTLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE----GRIGDFAREGLLLLM 154 (353)
T ss_pred HHHHHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC----cHHHHHHHHHHHHHH
Confidence 7766664 366655555433 2456788888764 466677777777777
Q ss_pred hcC
Q psy14164 300 KDS 302 (361)
Q Consensus 300 ~~~ 302 (361)
.-.
T Consensus 155 ~l~ 157 (353)
T PF10257_consen 155 SLA 157 (353)
T ss_pred hCC
Confidence 655
No 336
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=49.98 E-value=2.5e+02 Score=27.20 Aligned_cols=179 Identities=15% Similarity=0.219 Sum_probs=108.6
Q ss_pred CHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhc-CChhhHHHHHhhC--cHHH
Q psy14164 154 DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR-ENEECLKEFIKRD--GFSV 230 (361)
Q Consensus 154 ~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r-~~~~~~~~f~~~g--gi~~ 230 (361)
+..++..+..++-.+.++ -++.+.+.|... ...+...++.-|.+|++ +.......|+..= ..+.
T Consensus 39 ~~~~~~~g~~l~~~iL~~------------~~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~ 105 (330)
T PF11707_consen 39 DLSFQSYGLELIRSILQN------------HLKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKS 105 (330)
T ss_pred chhHHHHHHHHHHHHHHH------------HHHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhh
Confidence 334666666665555432 177788888864 45777899999999999 6666667776532 3445
Q ss_pred HHHhhccC-----C--------HHHHHHHHHHHHHHhcC-CchHHHHHHh-CCcHHHHHHhccCCCCCChhHHHHHHHHH
Q psy14164 231 LLRCIQSK-----K--------EKLVIKSCFLIACLCTD-NNQVKQVLLS-MGMVEQMCVLIDIEDALDTEMNEHLLSAL 295 (361)
Q Consensus 231 Lv~lL~s~-----~--------~~v~~kA~~ll~~L~~~-~~~~~~~l~~-~g~i~~Lv~lL~~~~~~d~~~~e~al~aL 295 (361)
+.+++... . ..+|.....++-.++.. ++..+..+++ .+.+..+.+-|..+ +.++...++.+|
T Consensus 106 l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D---~~~~v~~iL~~l 182 (330)
T PF11707_consen 106 LPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD---PPETVILILETL 182 (330)
T ss_pred HHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCC---CHHHHHHHHHHH
Confidence 66666421 1 27777777666665554 6667766664 56688888888887 899999999999
Q ss_pred HHHHhcChHHHH--hhccCcchHHHHHHHHHHhhcCh---hhhHHHHHHHHHHHHHhcCCCC
Q psy14164 296 ASLIKDSPEAQS--LCRLEPLNLKFKLNFIKEKHAGN---EVYHKELEYVNSVLTEVFEEDS 352 (361)
Q Consensus 296 ~~L~~~~~~~~~--~~~~~~l~l~~~Le~~~~~l~~~---~e~~~e~~~~~~il~~~f~~~~ 352 (361)
..-+-..+..-+ .|+--+ ...|.+... +-.. .+.....+.+...+..++..+.
T Consensus 183 ~~~Vl~~~~v~r~~K~~~fn---~~~L~~l~~-Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 183 KDKVLKDSSVSRSTKCKLFN---EWTLSQLAS-LYSRDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred HHHhccCCCCChhhhhhhcC---HHHHHHHHH-HhcccCCcccchHHHHHHHHHHHHhcCCC
Confidence 864433321111 111111 112332222 3222 1234557788888887766554
No 337
>KOG3533|consensus
Probab=47.73 E-value=1.5e+02 Score=34.45 Aligned_cols=136 Identities=17% Similarity=0.231 Sum_probs=77.9
Q ss_pred HHHHHCCCHHHHHHhhcCCCH--------HHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHH-
Q psy14164 135 NDFLKMGGLPVLQPLLEGSDP--------ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSL- 205 (361)
Q Consensus 135 ~~~~~~Gg~~~Lv~LL~s~~~--------~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al- 205 (361)
+-+..+|+...++.+|+-|.. ++-..|-..|-+.|.+|+.+|..+.+. +.++-.. . -+-...+
T Consensus 1229 rLLkNmg~h~VvLdllqiPydkk~D~~M~elm~laHeFLqnFC~gN~qNQ~lLhkh------i~lfl~p-G-~LEa~Tm~ 1300 (2706)
T KOG3533|consen 1229 RLLKNMGVHEVVLELLQIPYDKKHDHKMMELMTLAHEFLQNFCKGNKQNQSLLHKH------ISLFLDP-G-MLEAGTMV 1300 (2706)
T ss_pred HHHHhcchHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH------HHhhcCc-c-hhhHHHHH
Confidence 446778999999999986542 467778889999999999999765432 2232221 1 0111111
Q ss_pred ------HHHHHHhcCChhhHHHHH---hhCc-HHHHHHhhc----cCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHH
Q psy14164 206 ------YAVSCLVRENEECLKEFI---KRDG-FSVLLRCIQ----SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE 271 (361)
Q Consensus 206 ------~ALS~l~r~~~~~~~~f~---~~gg-i~~Lv~lL~----s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~ 271 (361)
+.|++=+ ++...+.|+ +.+| -..-+++|+ -.+..+++.--.....|+..+.++...-.+.+-++
T Consensus 1301 ~IF~nN~~Lcsev--~e~vvqHfVh~ie~hgR~v~yl~fLqt~Vkae~k~ikkcQdmVm~El~nagddVlvfYnD~aSf~ 1378 (2706)
T KOG3533|consen 1301 AIFRNNRELCSEV--PEEVVQHFVHLIETHGRNVIYLEFLQTLVKAEGKEIKKCQDMVMNELCNAGDDVLVFYNDNASFE 1378 (2706)
T ss_pred HHHHhhHHHHhhC--cHHHHHHHHHHHHHcCcCHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcCCCcEEEEecCcccHH
Confidence 1222211 233444443 2222 222233333 23444444444555677777777766666777788
Q ss_pred HHHHhccCC
Q psy14164 272 QMCVLIDIE 280 (361)
Q Consensus 272 ~Lv~lL~~~ 280 (361)
.|+.++++.
T Consensus 1379 ~l~~MM~~e 1387 (2706)
T KOG3533|consen 1379 ELEAMMKDE 1387 (2706)
T ss_pred HHHHHHHHH
Confidence 888887653
No 338
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=47.38 E-value=9.5 Score=22.62 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhc
Q psy14164 157 LRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE 193 (361)
Q Consensus 157 vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~ 193 (361)
||..|+++||.+-. + -++|+|++.|.
T Consensus 1 VR~~Aa~aLg~igd--~---------~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD--P---------RAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S--H---------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC--H---------HHHHHHHHHhc
Confidence 68899999998753 2 25677776654
No 339
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=47.30 E-value=2.7e+02 Score=26.88 Aligned_cols=159 Identities=11% Similarity=0.103 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHH-hhc----C----CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHH
Q psy14164 116 ICIGALDNLSDYICSIDYANDFLKMGGLPVLQP-LLE----G----SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLN 186 (361)
Q Consensus 116 ~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~-LL~----s----~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~ 186 (361)
.|.+.|.-++.+++..++.+.+ ...-+|+|+. .|. + -+++|-...+.++..+-+..+..-..+++ .++.
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v-~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~vf~ 120 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEV-ANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AVFE 120 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHH-HHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHH-HHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HHHH
Confidence 4555666666666655544442 2335677766 332 2 34555555555555554432222233343 4677
Q ss_pred HHHHhhccC--CCHHHHHHHHHHHHHHhcCChhhHHHHHh---hCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC----C
Q psy14164 187 LLLTSIEHD--SNTTVQVKSLYAVSCLVRENEECLKEFIK---RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD----N 257 (361)
Q Consensus 187 ~Ll~LL~~~--~~~~v~~~Al~ALS~l~r~~~~~~~~f~~---~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~----~ 257 (361)
+.+.++..+ .-+..|..-..-|.++++++.+..-.+-. .--+..++-.+++++..+...++.++..|+.. +
T Consensus 121 ~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~ 200 (319)
T PF08767_consen 121 CTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTN 200 (319)
T ss_dssp HHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 778888754 23689998888899998876554322210 12345666777889999999999999988864 3
Q ss_pred chHHHHHHhCCcHHHHHHh
Q psy14164 258 NQVKQVLLSMGMVEQMCVL 276 (361)
Q Consensus 258 ~~~~~~l~~~g~i~~Lv~l 276 (361)
++....+.+.-++..+...
T Consensus 201 ~~~~~~F~~~y~~~il~~i 219 (319)
T PF08767_consen 201 PEFANQFYQQYYLDILQDI 219 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666665544444443
No 340
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=46.43 E-value=2.1e+02 Score=25.33 Aligned_cols=101 Identities=17% Similarity=0.213 Sum_probs=61.3
Q ss_pred HHHHHHhhccCC-CHHHHHHHHHHHHHHhcCChhhHHHH-HhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhc-CCchHH
Q psy14164 185 LNLLLTSIEHDS-NTTVQVKSLYAVSCLVRENEECLKEF-IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT-DNNQVK 261 (361)
Q Consensus 185 l~~Ll~LL~~~~-~~~v~~~Al~ALS~l~r~~~~~~~~f-~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~-~~~~~~ 261 (361)
=|.|+.+|.... +.+.-+.....+|.++ ..-| +..|++.-|.+++-+.+..-..||...+..|.. -..++.
T Consensus 5 kplLIsCL~~q~~k~s~~KiL~~iVs~Va------~~v~~~~~~~W~eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~efl 78 (174)
T PF04510_consen 5 KPLLISCLTMQETKESDFKILRRIVSHVA------YEVFDLQEGGWDELSDCILSLSENEPVKAFHIFICLPMPLYGEFL 78 (174)
T ss_pred HHHHHHHHHhhcccHhHHHHHHHHHHHHH------HHHHhcCCCCchhHHHHHHHhhccchHHHHHHHHhCCchhhhhHH
Confidence 467788887532 2222233333333332 2233 467899999998877666666899999988873 345566
Q ss_pred HHHHhCCcHHHHHHhccCCCCCChhHHHHHH
Q psy14164 262 QVLLSMGMVEQMCVLIDIEDALDTEMNEHLL 292 (361)
Q Consensus 262 ~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al 292 (361)
..+.+. +++.+.+.|.++.+.+.+...-|+
T Consensus 79 ~~~~~~-L~~~~~~~L~~p~~~d~~~W~LAl 108 (174)
T PF04510_consen 79 IPFMEN-LLPEISKVLLPPEEVDVEDWVLAL 108 (174)
T ss_pred HHHHHH-HHHHHHHHcCCchhccHHHHHHHH
Confidence 566654 777788888776333444344444
No 341
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=46.23 E-value=1.7e+02 Score=35.38 Aligned_cols=137 Identities=9% Similarity=0.175 Sum_probs=82.0
Q ss_pred CCCHHHHHHHHHHHHHHhhcCHHH---HHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcH
Q psy14164 152 GSDPELRWRAAETVADIVQNNPFS---QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGF 228 (361)
Q Consensus 152 s~~~~vr~~Aa~~Lg~iaqnn~~~---q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi 228 (361)
|++..|+..|...|..++..--.. ...=.....+.++..++.+..+..+|...+.++..|+...... + ..||
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~n---I--kSGW 1222 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNN---V--KSGW 1222 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhh---h--hcCc
Confidence 567788888988888877621111 1111123457778887777677899999999999998754332 2 2399
Q ss_pred HHHHHhhcc----CCHHHHHHHHHHHHHHhcCCchHHHHHHh--CC----cHHHHHHhccCCCCCChhHHHHHHHHHHHH
Q psy14164 229 SVLLRCIQS----KKEKLVIKSCFLIACLCTDNNQVKQVLLS--MG----MVEQMCVLIDIEDALDTEMNEHLLSALASL 298 (361)
Q Consensus 229 ~~Lv~lL~s----~~~~v~~kA~~ll~~L~~~~~~~~~~l~~--~g----~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L 298 (361)
..+..+|.. .+..+...|--.+..++.+.- ..+.. .+ +|..|..+-+.. .+.++--.|+..|+.+
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f---~~l~~~~~~~F~DlV~cL~~Fa~q~--~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYF---PYITETETTTFTDCVNCLIAFTNSR--FNKDISLNAIAFLRFC 1297 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhh---hhccccchhHHHHHHHHHHHHHhCc--CcccccHHHHHHHHHH
Confidence 999988873 356666666666666554311 11111 13 333344443322 1345555667777755
No 342
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=45.53 E-value=1.5e+02 Score=25.74 Aligned_cols=29 Identities=38% Similarity=0.525 Sum_probs=21.9
Q ss_pred CC--HHHHHHhhcCCCHHHHHHHHHHHHHHh
Q psy14164 141 GG--LPVLQPLLEGSDPELRWRAAETVADIV 169 (361)
Q Consensus 141 Gg--~~~Lv~LL~s~~~~vr~~Aa~~Lg~ia 169 (361)
|| +.+||.+|.+++..+...|+.+|.+..
T Consensus 92 GGYNV~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 92 GGYNVQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp SSTTHHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred CCCcHHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 66 799999999999999999999998753
No 343
>KOG1949|consensus
Probab=45.53 E-value=2.8e+02 Score=30.19 Aligned_cols=142 Identities=13% Similarity=0.116 Sum_probs=84.7
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhh-cCHH----HHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy14164 147 QPLLEGSDPELRWRAAETVADIVQ-NNPF----SQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKE 221 (361)
Q Consensus 147 v~LL~s~~~~vr~~Aa~~Lg~iaq-nn~~----~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~ 221 (361)
.+-|+.++..||..|+.++-++-- -.|. -.+.+++ .-...|.+||++ +-+.||..|+--++.++.. +..
T Consensus 180 ~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d-~~p~VRS~a~~gv~k~~s~----fWe 253 (1005)
T KOG1949|consen 180 WRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLED-PYPMVRSTAILGVCKITSK----FWE 253 (1005)
T ss_pred HHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcC-CCchHHHHHHHHHHHHHHH----HHH
Confidence 445667899999999999887632 1121 1222222 245678889986 5679999999888887642 222
Q ss_pred HHhhCc----HHHHHHhhc-cCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHH
Q psy14164 222 FIKRDG----FSVLLRCIQ-SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALA 296 (361)
Q Consensus 222 f~~~gg----i~~Lv~lL~-s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~ 296 (361)
++-... +..++.-+. .+...||....-.|..++.+.. .-.+.+.+ ++++-..|... ...+|..+...|.
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~--sh~~le~~-Lpal~~~l~D~---se~VRvA~vd~ll 327 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL--SHPLLEQL-LPALRYSLHDN---SEKVRVAFVDMLL 327 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc--chhHHHHH-HHhcchhhhcc---chhHHHHHHHHHH
Confidence 322221 222233232 3456788877777888776521 11222222 34566666665 7788888777776
Q ss_pred HHHh
Q psy14164 297 SLIK 300 (361)
Q Consensus 297 ~L~~ 300 (361)
.|-.
T Consensus 328 ~ik~ 331 (1005)
T KOG1949|consen 328 KIKA 331 (1005)
T ss_pred HHHh
Confidence 6654
No 344
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=44.73 E-value=61 Score=28.77 Aligned_cols=100 Identities=16% Similarity=0.272 Sum_probs=61.8
Q ss_pred HHHHHHHhhcCcccH---HHH-----HH-----CCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHH
Q psy14164 120 ALDNLSDYICSIDYA---NDF-----LK-----MGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLN 186 (361)
Q Consensus 120 Al~~L~~lve~idna---~~~-----~~-----~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~ 186 (361)
.+..++.++..+||- ..| .+ -...+.+...+.|++.=+|..++-++......... ...+.
T Consensus 86 ~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~~~-------~~~l~ 158 (213)
T PF08713_consen 86 DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKHPEALELLEKWAKSDNEWVRRAAIVMLLRYIRKEDF-------DELLE 158 (213)
T ss_dssp HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHHGGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGGCHH-------HHHHH
T ss_pred HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhcCH-------HHHHH
Confidence 466777777777653 222 11 11344455577888888887777665544433110 01223
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCc
Q psy14164 187 LLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDG 227 (361)
Q Consensus 187 ~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~gg 227 (361)
.+..++. +++.-||+...|+|..+...++.....|+..++
T Consensus 159 ~~~~~~~-d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~~~ 198 (213)
T PF08713_consen 159 IIEALLK-DEEYYVQKAIGWALREIGKKDPDEVLEFLQKNS 198 (213)
T ss_dssp HHHHCTT-GS-HHHHHHHHHHHHHHCTT-HHHHHHHHHHS-
T ss_pred HHHHHcC-CchHHHHHHHHHHHHHHHHhCHHHHHHHHHHCc
Confidence 3333344 356799999999999999999999999998765
No 345
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=44.22 E-value=1.8e+02 Score=26.87 Aligned_cols=78 Identities=12% Similarity=0.315 Sum_probs=49.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHh--------------------------hcCHHHHHHHHh---cChHHHHHHhhccC
Q psy14164 145 VLQPLLEGSDPELRWRAAETVADIV--------------------------QNNPFSQNFIIQ---TDFLNLLLTSIEHD 195 (361)
Q Consensus 145 ~Lv~LL~s~~~~vr~~Aa~~Lg~ia--------------------------qnn~~~q~~v~~---~g~l~~Ll~LL~~~ 195 (361)
.++.++.+.++.||..|.+.+..++ .|+|.....-++ .+.+..|+..+..+
T Consensus 47 ~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~ 126 (239)
T PF11935_consen 47 RILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSP 126 (239)
T ss_dssp HHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-T
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 3556677777788888888777764 223332222222 25778888888875
Q ss_pred C-CHHHHHHHHHHHHHHhcCChhhHHHH
Q psy14164 196 S-NTTVQVKSLYAVSCLVRENEECLKEF 222 (361)
Q Consensus 196 ~-~~~v~~~Al~ALS~l~r~~~~~~~~f 222 (361)
. +..+-...+.+|+.|++.-|.-...+
T Consensus 127 ~i~~~~~~a~insL~~Iak~RP~~~~~I 154 (239)
T PF11935_consen 127 HISSPLLTAIINSLSNIAKQRPQFMSRI 154 (239)
T ss_dssp T--HHHHHHHHHHHHHHHHHSGGGHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 5 56788888999999998666554444
No 346
>KOG1993|consensus
Probab=43.98 E-value=4.8e+02 Score=28.82 Aligned_cols=218 Identities=15% Similarity=0.124 Sum_probs=119.8
Q ss_pred CCCCHHhHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC--C------HHHHHHHHHHHHHh-hcCcccHHHHHHCCCHHH
Q psy14164 75 ASMNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQD--Q------KDICIGALDNLSDY-ICSIDYANDFLKMGGLPV 145 (361)
Q Consensus 75 ~~~s~e~~~~L~eal~~~~~~~~~~mk~~l~~L~~~~~--~------~~~~~~Al~~L~~l-ve~idna~~~~~~Gg~~~ 145 (361)
+|=-|.=.+-+-++.+++.++++..|-.....+.++.. + .+....|++--.+- .+..|.+.-|... .+|-
T Consensus 414 RPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~-llpE 492 (978)
T KOG1993|consen 414 RPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEA-LLPE 492 (978)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHh-hCHH
Confidence 34333334445566666666665444333344443332 2 14444554443332 3334555555432 1222
Q ss_pred HHHhhcCC-CHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q psy14164 146 LQPLLEGS-DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIK 224 (361)
Q Consensus 146 Lv~LL~s~-~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~ 224 (361)
+- ..++ ..-+|.+.+|+||.=+.- ++... ++.-+-..++++|+...|..|+-.++.++.-++-+..-..+.|..
T Consensus 493 l~--~~~~~~RiiRRRVa~ilg~Wvsv--q~~~e-~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp 567 (978)
T KOG1993|consen 493 LA--NDHGNSRIIRRRVAWILGQWVSV--QQKLE-LKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLP 567 (978)
T ss_pred hh--hcccchhHHHHHHHHHHhhhhhe--echHh-HHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhh
Confidence 22 2232 346899999999987751 11111 222244557888887568889999999999999876555555543
Q ss_pred --hCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHh
Q psy14164 225 --RDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK 300 (361)
Q Consensus 225 --~ggi~~Lv~lL~s~-~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~ 300 (361)
.+-+..+..+|+.- ....|.....+++.|...-.+..+-.. +-+-.++.+|=..++..+-+|...+.+|.+++.
T Consensus 568 ~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~--~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~ 644 (978)
T KOG1993|consen 568 YLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYA--STIVQYLPLLWEESEEEPLLRCALLATLRNLVN 644 (978)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHH
Confidence 45666777777653 567778888888888765322222111 111122222211223356677777888888875
No 347
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=43.89 E-value=45 Score=31.87 Aligned_cols=53 Identities=21% Similarity=0.089 Sum_probs=39.1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCH-------H-------HHHHHHhcChHHHHHHhhcc
Q psy14164 142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNP-------F-------SQNFIIQTDFLNLLLTSIEH 194 (361)
Q Consensus 142 g~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~-------~-------~q~~v~~~g~l~~Ll~LL~~ 194 (361)
-+..++.-|.+++...|..|+++|..++++.- . +-..+.+.|++++|+.+|..
T Consensus 61 ~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 61 FIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 35567777778888889999999999988731 1 12234577999999999874
No 348
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=43.38 E-value=2.8e+02 Score=25.96 Aligned_cols=116 Identities=21% Similarity=0.222 Sum_probs=66.4
Q ss_pred CCCHHHHHHhhcCCCHH--------HHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccC-CCHHHHHHHHHHHHH
Q psy14164 140 MGGLPVLQPLLEGSDPE--------LRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD-SNTTVQVKSLYAVSC 210 (361)
Q Consensus 140 ~Gg~~~Lv~LL~s~~~~--------vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~-~~~~v~~~Al~ALS~ 210 (361)
.-++++|+++++.++.. +=+--.++++++++ |-+..|-+++.+. .+.-+|..|+.||..
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~------------G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD------------GDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC------------CCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 45799999999876542 22222333333333 4566666666642 356799999999999
Q ss_pred HhcCChhhHHHHHhhCcHHHHHHh-hccCCHHHHHHHHHHHHHHhcCCch----HHHHHHhCCcHHH
Q psy14164 211 LVRENEECLKEFIKRDGFSVLLRC-IQSKKEKLVIKSCFLIACLCTDNNQ----VKQVLLSMGMVEQ 272 (361)
Q Consensus 211 l~r~~~~~~~~f~~~ggi~~Lv~l-L~s~~~~v~~kA~~ll~~L~~~~~~----~~~~l~~~g~i~~ 272 (361)
++..++.....+++ -+..++.. +...+.- --.+++++++.-.+. ..+.+.+.|.|+.
T Consensus 140 l~~~~~~~Re~vi~--~f~~ll~~~l~~~~~~---~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~ 201 (249)
T PF06685_consen 140 LVHEGPISREEVIQ--YFRELLNYFLERNPSF---LWGSLVADICDLYPEELLPEIRKAFEDGLVDP 201 (249)
T ss_pred HHHcCCCCHHHHHH--HHHHHHHHHhccCchH---HHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCc
Confidence 99988887777763 23333332 4433333 123345555554331 2334444566644
No 349
>KOG0392|consensus
Probab=42.86 E-value=77 Score=36.38 Aligned_cols=107 Identities=15% Similarity=0.075 Sum_probs=61.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHH-HHHHHHHHHhcCChhhHHH
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQV-KSLYAVSCLVRENEECLKE 221 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~-~Al~ALS~l~r~~~~~~~~ 221 (361)
++.+..++.|.+..+|..|+++|+.+......-.... ++..++.++.. .+..+++ -|.-.+..+++.-......
T Consensus 818 l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~----v~~~~~~ll~~-~~~~~~r~~a~e~~~~l~~~l~~~l~~ 892 (1549)
T KOG0392|consen 818 LPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMAT----VINGFLPLLGD-LDKFVRRQGADELIELLDAVLMVGLVP 892 (1549)
T ss_pred hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhccc-hhhHhhhhhHHHHHHHHHHhhcccccc
Confidence 6778888999999999999999999986543322222 23333334443 2222333 2333333333321111000
Q ss_pred HHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhc
Q psy14164 222 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT 255 (361)
Q Consensus 222 f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~ 255 (361)
+. .=-+++|.+.+......||..|..+++.+.-
T Consensus 893 ~~-~Llv~pllr~msd~~d~vR~aat~~fa~lip 925 (1549)
T KOG0392|consen 893 YN-PLLVVPLLRRMSDQIDSVREAATKVFAKLIP 925 (1549)
T ss_pred cc-eeehhhhhcccccchHHHHHHHHHHHHHHhc
Confidence 00 1135677777777788888888888887763
No 350
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=42.38 E-value=1.7e+02 Score=23.56 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=46.0
Q ss_pred ChHHHHHHhhccCC---CHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC--CHHHHHHHHHHHHHHhcC
Q psy14164 183 DFLNLLLTSIEHDS---NTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTD 256 (361)
Q Consensus 183 g~l~~Ll~LL~~~~---~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~--~~~v~~kA~~ll~~L~~~ 256 (361)
|.+..+-..+.+.. +..-|+.++.+|.-|++-...... ...|.+.-+|++. .+.++..|..+...++..
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~-----~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~ 84 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS-----SALPQIMACLQSALEIPELRSLALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHh
Confidence 56666666665433 557799999999999984333322 3455666666653 566888888777777665
No 351
>PLN03205 ATR interacting protein; Provisional
Probab=42.27 E-value=3.9e+02 Score=27.18 Aligned_cols=136 Identities=13% Similarity=0.225 Sum_probs=83.6
Q ss_pred HHHHHHhhc-----CCCHHHHHHHHHHHHHHhh-cCHHH-HHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCC
Q psy14164 143 LPVLQPLLE-----GSDPELRWRAAETVADIVQ-NNPFS-QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVREN 215 (361)
Q Consensus 143 ~~~Lv~LL~-----s~~~~vr~~Aa~~Lg~iaq-nn~~~-q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~ 215 (361)
|..|..++. +....||-.|..+.--|+. .|+.. ++.|...-++..+-++|+.+...-|++.|+.-+-=+. ++
T Consensus 369 WvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLL-NC 447 (652)
T PLN03205 369 WHSLFELMNQIASIRTEEDVKLEALSIMNIIVMSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLL-NC 447 (652)
T ss_pred HHHHHHHHHHHHhccchhheeeehhhhhHHhhhccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHH-cC
Confidence 555555432 5677888888887766554 34544 4445556788889999988766789998887665433 23
Q ss_pred hhhHHHHH--------------------hhCcHHH----HHHhhcc-----CCHHHHHHHHHHHHHHhcCCchHHHHHH-
Q psy14164 216 EECLKEFI--------------------KRDGFSV----LLRCIQS-----KKEKLVIKSCFLIACLCTDNNQVKQVLL- 265 (361)
Q Consensus 216 ~~~~~~f~--------------------~~ggi~~----Lv~lL~s-----~~~~v~~kA~~ll~~L~~~~~~~~~~l~- 265 (361)
|.-...|. ...|+.. |.+|+.. .+.+++++|..+++.+++++..-.+.++
T Consensus 448 pklL~iFcSg~~e~~~ad~eNd~~~n~st~k~fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk~GfEilv~ 527 (652)
T PLN03205 448 PKLYDRFDSLHEEKNSSDTENDSEGNFFALEAFGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSGYELLSN 527 (652)
T ss_pred cHHHHHHhcCCccccccccccccccccccHHHHHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCCceeeec
Confidence 43333333 1123433 4444443 3789999999999999987543333222
Q ss_pred -----hCCcHHHHHHhccC
Q psy14164 266 -----SMGMVEQMCVLIDI 279 (361)
Q Consensus 266 -----~~g~i~~Lv~lL~~ 279 (361)
..+++..++++|-+
T Consensus 528 hkl~~~~NFLmLILqvLvS 546 (652)
T PLN03205 528 HKLPQDSNFLMLILHLLVA 546 (652)
T ss_pred ccCCCCccHHHHHHHHHHH
Confidence 34556556665543
No 352
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=42.13 E-value=1.8e+02 Score=23.21 Aligned_cols=65 Identities=15% Similarity=0.117 Sum_probs=46.4
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHH
Q psy14164 227 GFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL 295 (361)
Q Consensus 227 gi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL 295 (361)
-+..|++-++.++.-.+.++..++..|+. .|...+.+.+.|.++.|-++=... ++..+..+-..+
T Consensus 31 Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr~~~---~~~~~~~id~il 95 (98)
T PF14726_consen 31 LLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLRPNV---EPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHHhcC---CHHHHHHHHHHH
Confidence 44555666667777789999999999876 577888999999988876665444 555655544433
No 353
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=40.77 E-value=46 Score=19.75 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhcCChhh
Q psy14164 199 TVQVKSLYAVSCLVRENEEC 218 (361)
Q Consensus 199 ~v~~~Al~ALS~l~r~~~~~ 218 (361)
.+|..|+++|+++ +++.+
T Consensus 2 ~vR~~aa~aLg~~--~~~~a 19 (30)
T smart00567 2 LVRHEAAFALGQL--GDEEA 19 (30)
T ss_pred HHHHHHHHHHHHc--CCHhH
Confidence 5899999999998 44544
No 354
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=40.75 E-value=93 Score=32.06 Aligned_cols=79 Identities=11% Similarity=0.211 Sum_probs=52.7
Q ss_pred hcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHH-HHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHH
Q psy14164 212 VRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIA-CLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEH 290 (361)
Q Consensus 212 ~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~-~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~ 290 (361)
++.++.....|+++=+.+.++.+|- | +|+ .=........+.+.+.++|+.|+.+|... .+.+++..
T Consensus 16 ik~~~~~v~~llkHI~~~~ImDlLL--------k---lIs~d~~~~~~~ilewL~~q~LI~~Li~~L~p~--~~~~~q~n 82 (475)
T PF04499_consen 16 IKSQPNFVDNLLKHIDTPAIMDLLL--------K---LISTDKPESPTGILEWLAEQNLIPRLIDLLSPS--YSSDVQSN 82 (475)
T ss_pred HHhCccHHHHHHHhcCCcHHHHHHH--------H---HHccCcccchHHHHHHHHHhCHHHHHHHHhCCC--CCHHHHHH
Confidence 4455666677777666666666551 1 111 00111235667778899999999999743 47889999
Q ss_pred HHHHHHHHHhcCh
Q psy14164 291 LLSALASLIKDSP 303 (361)
Q Consensus 291 al~aL~~L~~~~~ 303 (361)
|...|..|...+.
T Consensus 83 aa~~L~aII~is~ 95 (475)
T PF04499_consen 83 AADFLKAIIRISR 95 (475)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887654
No 355
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=40.68 E-value=3.5e+02 Score=26.19 Aligned_cols=97 Identities=21% Similarity=0.333 Sum_probs=69.2
Q ss_pred CCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCH--HHHHHHHhcChHHHHHHhhccCC--CHHHHHHHHHHHHHHhc
Q psy14164 140 MGGLPVLQPLLEG--SDPELRWRAAETVADIVQNNP--FSQNFIIQTDFLNLLLTSIEHDS--NTTVQVKSLYAVSCLVR 213 (361)
Q Consensus 140 ~Gg~~~Lv~LL~s--~~~~vr~~Aa~~Lg~iaqnn~--~~q~~v~~~g~l~~Ll~LL~~~~--~~~v~~~Al~ALS~l~r 213 (361)
.|-+..++..+.. .+...|..=+.++-+...+-+ .-|..+.+.|.++.|+..+-++. +..+.-...--|+-+++
T Consensus 94 ~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK 173 (303)
T PF12463_consen 94 KGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIK 173 (303)
T ss_pred ccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHC
Confidence 4556667775543 456778888888888877533 35778889999999999776543 23677889999999999
Q ss_pred CChhhHHHHHh---hCcHHHHHHhhc
Q psy14164 214 ENEECLKEFIK---RDGFSVLLRCIQ 236 (361)
Q Consensus 214 ~~~~~~~~f~~---~ggi~~Lv~lL~ 236 (361)
++..+...|-. ...+..+++.+.
T Consensus 174 ~n~~~f~~l~~~l~~~kF~~fl~~v~ 199 (303)
T PF12463_consen 174 FNRDAFQRLNKYLNNDKFQRFLEVVS 199 (303)
T ss_pred CCHHHHHHHHHHhcchHHHHHHHHHH
Confidence 99998877753 124445554443
No 356
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=40.20 E-value=4.2e+02 Score=27.00 Aligned_cols=172 Identities=15% Similarity=0.177 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHH-HHHh
Q psy14164 114 KDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEG-SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNL-LLTS 191 (361)
Q Consensus 114 ~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s-~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~-Ll~L 191 (361)
...++.|++.|.+.+..... ..+.. .|...-.|+.. ...+.|..+...+-.+++..... .++... +.+.
T Consensus 4 l~~R~~a~~~l~~~i~~~~~-~~i~~--iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~------~~~~R~~fF~~ 74 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPL-SSIEE--IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSS------SGLMRAEFFRD 74 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCc-hHHHH--HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccc------cHHHHHHHHHH
Confidence 46778888888887765432 11111 23333335544 35689999999999998765431 111111 2222
Q ss_pred hccC---CCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhcc---------------------------CCHH
Q psy14164 192 IEHD---SNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS---------------------------KKEK 241 (361)
Q Consensus 192 L~~~---~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s---------------------------~~~~ 241 (361)
+... .+-..+.+|+.+|++ +.... .+++....+.|...|.. .+.+
T Consensus 75 I~~~~~~~d~~~~l~aL~~LT~---~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 149 (464)
T PF11864_consen 75 ISDPSNDDDFDLRLEALIALTD---NGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEES 149 (464)
T ss_pred HhcCCCchhHHHHHHHHHHHHc---CCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhh
Confidence 2322 233456666655554 33333 33445555555554421 1233
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhc-cCCCCCChhHHHHHHHHHHHHHhcC
Q psy14164 242 LVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLI-DIEDALDTEMNEHLLSALASLIKDS 302 (361)
Q Consensus 242 v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL-~~~~~~d~~~~e~al~aL~~L~~~~ 302 (361)
.-.....++.+++.-+......-.=.++|..++.+= ++. +.+..+.++..+..+...+
T Consensus 150 ~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts---~~~di~~~L~vldaii~y~ 208 (464)
T PF11864_consen 150 NLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTS---SEDDIEACLSVLDAIITYG 208 (464)
T ss_pred hHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHHHcC
Confidence 334444455555543322111111124556566552 333 4455567777777776533
No 357
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=39.91 E-value=1.1e+02 Score=36.71 Aligned_cols=61 Identities=10% Similarity=0.211 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHHHhhcCHHHHHHHHhcC---hHHHHHHhhccCCCHHHHHHHHHHHHHHhc
Q psy14164 153 SDPELRWRAAETVADIVQNNPFSQNFIIQTD---FLNLLLTSIEHDSNTTVQVKSLYAVSCLVR 213 (361)
Q Consensus 153 ~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g---~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r 213 (361)
++...-..-+++|+.++++++..+..+.+.. .++.|+.++....+..+|...+.+|++++.
T Consensus 576 ee~~~L~a~L~Li~~V~~~s~~ar~~l~~~~~~~~~~~L~~L~~~~vp~~Lkaai~~~Laal~~ 639 (1691)
T PF11894_consen 576 EEVEMLSAYLRLISSVVRNSEQARSALLENPNWNPIDILFGLLSCPVPPSLKAAIFNALAALAA 639 (1691)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHhCCCCchHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 4455667889999999999999999998764 699999999987778999999999999953
No 358
>KOG4524|consensus
Probab=38.93 E-value=1.6e+02 Score=32.96 Aligned_cols=94 Identities=15% Similarity=0.221 Sum_probs=68.0
Q ss_pred ChHHHHHHhhccCCCHHHHHHHHHHHHH---HhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCch
Q psy14164 183 DFLNLLLTSIEHDSNTTVQVKSLYAVSC---LVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQ 259 (361)
Q Consensus 183 g~l~~Ll~LL~~~~~~~v~~~Al~ALS~---l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~ 259 (361)
.++..-..+|++ .+..+|.+|+-.++. +...++...-..+ +-.|+.+++.+..+++-+...|+.+|..+.....+
T Consensus 803 kIl~r~~~~LS~-e~l~irvkaLdvl~~gl~~La~~~n~LlPlv-hq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 803 KILGRGIHLLSH-ESLRIRVKALDVLSLGLPLLATYHNLLLPLV-HQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHhcc-hhHHHHHHHHHHHHhccHHHhccchhHhHHH-HhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence 466667778887 678999999999985 3444444433333 56899999999999999999999999999876433
Q ss_pred H-HHHHHhCCcHHHHHHhccC
Q psy14164 260 V-KQVLLSMGMVEQMCVLIDI 279 (361)
Q Consensus 260 ~-~~~l~~~g~i~~Lv~lL~~ 279 (361)
+ +..+. ..++|.+-.++..
T Consensus 881 Fv~sR~l-~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 881 FVASRFL-EDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHH-HHHHHHHHHHHHH
Confidence 3 33443 3566766655543
No 359
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=38.53 E-value=3.7e+02 Score=25.89 Aligned_cols=213 Identities=18% Similarity=0.183 Sum_probs=102.4
Q ss_pred HHHHHHHHHhhcCC-HHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHH
Q psy14164 82 RGFLLDALNSMMVN-VGA-ELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRW 159 (361)
Q Consensus 82 ~~~L~eal~~~~~~-~~~-~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~ 159 (361)
|-..-++|..+... -.. .+...+.++.. +..+..+..++..|...+...+.. ..-..+..+.+=+....+.+|.
T Consensus 4 r~~~~~~L~~l~~~~~s~~i~~~l~~~~~K-E~nE~aL~~~l~al~~~~~~~~~~---~~~~~~~~~~kGl~~kk~~vR~ 79 (339)
T PF12074_consen 4 RVLHASMLSSLPSSSLSSKIVQGLSPLLSK-ESNEAALSALLSALFKHLFFLSSE---LPKKVVDAFKKGLKDKKPPVRR 79 (339)
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHhCcC---CCHHHHHHHHHHhcCCCCcHHH
Confidence 33344555555431 222 33333333333 455566767776666655333000 0012345556666777777999
Q ss_pred HHHHHHHHHhh---cCHHHHHHHHhcChHHHHHHhhccC---CCHHHH---HHHHHHHHHHhcCChhhHHHHHhhCcHHH
Q psy14164 160 RAAETVADIVQ---NNPFSQNFIIQTDFLNLLLTSIEHD---SNTTVQ---VKSLYAVSCLVRENEECLKEFIKRDGFSV 230 (361)
Q Consensus 160 ~Aa~~Lg~iaq---nn~~~q~~v~~~g~l~~Ll~LL~~~---~~~~v~---~~Al~ALS~l~r~~~~~~~~f~~~ggi~~ 230 (361)
.-+..+|.+.. |.. ....+ ...+|.|++.++.. +-.... .-+++++-.+.+........ .......
T Consensus 80 ~w~~~~~~~~~~~~~~~-~~~~~--~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~--~~~~~~~ 154 (339)
T PF12074_consen 80 AWLLCLGEALWESPNSD-SLKFA--EPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDS--KNISFWS 154 (339)
T ss_pred HHHHHHHHHHhhccCch-HHHHH--HHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhh--hhhhhhh
Confidence 99999999987 222 11111 34888898888531 111212 22333333322211111111 0000000
Q ss_pred HHHhhccC-----CHHHHHH---------HHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHH
Q psy14164 231 LLRCIQSK-----KEKLVIK---------SCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALA 296 (361)
Q Consensus 231 Lv~lL~s~-----~~~v~~k---------A~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~ 296 (361)
+ .+..+ ++|+-.| .+.++..+..+.++....-....+-..++.++-+. .....+|..|+.+|.
T Consensus 155 l--~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~-~~~~~vR~~A~~~l~ 231 (339)
T PF12074_consen 155 L--ALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSS-NVSWKVRRAALSALK 231 (339)
T ss_pred h--ccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 0 01111 3344444 33344444433221111111223455667776654 125789999999999
Q ss_pred HHHhcChHHH
Q psy14164 297 SLIKDSPEAQ 306 (361)
Q Consensus 297 ~L~~~~~~~~ 306 (361)
.+...+|..+
T Consensus 232 ~l~~~~~~~l 241 (339)
T PF12074_consen 232 KLYASNPELL 241 (339)
T ss_pred HHHHhChHHH
Confidence 9998888653
No 360
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=38.20 E-value=4e+02 Score=26.17 Aligned_cols=133 Identities=14% Similarity=0.170 Sum_probs=84.3
Q ss_pred HCCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHh-hccC---C----CHHHHHHHHHHHH
Q psy14164 139 KMGGLPVLQPLLE-GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS-IEHD---S----NTTVQVKSLYAVS 209 (361)
Q Consensus 139 ~~Gg~~~Lv~LL~-s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~L-L~~~---~----~~~v~~~Al~ALS 209 (361)
+...++.|..+=. .-.+.+|..+++.+.++...... ..+....+..++.+| +... . .+.--+.-++.|+
T Consensus 7 ~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~--plL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL~~lc 84 (353)
T PF10257_consen 7 QHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQ--PLLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELLNTLC 84 (353)
T ss_pred HhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhccc--ccccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHHHHHH
Confidence 3456777777643 46789999999999999865332 233444677788888 5421 1 1233456788888
Q ss_pred HHhcCChhhHHHHHhhCc--------------------------HHHHHHhhccCCHHHHHHHHHHH---HHHhcCCchH
Q psy14164 210 CLVRENEECLKEFIKRDG--------------------------FSVLLRCIQSKKEKLVIKSCFLI---ACLCTDNNQV 260 (361)
Q Consensus 210 ~l~r~~~~~~~~f~~~gg--------------------------i~~Lv~lL~s~~~~v~~kA~~ll---~~L~~~~~~~ 260 (361)
.-+|.+|.-..-|...+. +..|+..+++. -++-.+|.-.+ ..+..+++..
T Consensus 85 ~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~l~~~~~~~ 163 (353)
T PF10257_consen 85 SKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMSLASEDPAL 163 (353)
T ss_pred HHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHhCCCCCcHH
Confidence 888888888888876443 34666666665 44544454444 4444446677
Q ss_pred HHHHHh-CCcHHHHH
Q psy14164 261 KQVLLS-MGMVEQMC 274 (361)
Q Consensus 261 ~~~l~~-~g~i~~Lv 274 (361)
.+++++ ..+.+.+.
T Consensus 164 ~~~i~~~S~fc~~la 178 (353)
T PF10257_consen 164 AQYIVEHSDFCPVLA 178 (353)
T ss_pred HHHHHHcchhHHHHH
Confidence 788887 44444443
No 361
>PF12030 DUF3517: Domain of unknown function (DUF3517); InterPro: IPR021905 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 340 amino acids in length. This domain is found associated with PF00443 from PFAM.
Probab=38.19 E-value=4e+02 Score=26.18 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhcCCCCCc
Q psy14164 336 ELEYVNSVLTEVFEEDSPE 354 (361)
Q Consensus 336 e~~~~~~il~~~f~~~~~~ 354 (361)
+..-...|.++||+++++|
T Consensus 317 i~~VI~~C~~~Yf~~~~~d 335 (337)
T PF12030_consen 317 ILRVIEHCLETYFDDSEED 335 (337)
T ss_pred HHHHHHHHHHHHcCCcccc
Confidence 4456677888999766655
No 362
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=37.17 E-value=2.7e+02 Score=23.96 Aligned_cols=138 Identities=17% Similarity=0.121 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHH-hhcC-CC--------HHHHHHHHHHHH
Q psy14164 97 GAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQP-LLEG-SD--------PELRWRAAETVA 166 (361)
Q Consensus 97 ~~~mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~-LL~s-~~--------~~vr~~Aa~~Lg 166 (361)
.++|.-.+.+|.+. .+...+.+++..|-- +|++.|-.. .... .+ ........
T Consensus 9 P~LL~~L~~iLk~e-~s~~iR~E~lr~lGi-------------lGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l---- 70 (160)
T PF11865_consen 9 PELLDILLNILKTE-QSQSIRREALRVLGI-------------LGALDPYKHKSIQKSLDSKSSENSNDESTDISL---- 70 (160)
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHHHhhh-------------ccccCcHHHhcccccCCccccccccccchhhHH----
Confidence 56777777788775 556677777654433 466655433 2211 11 11111111
Q ss_pred HHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHH
Q psy14164 167 DIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKS 246 (361)
Q Consensus 167 ~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA 246 (361)
...+.....+.+.-..++..|++.|+..+-..-+..++.||-+|...-....-.|+ .-.+|.+++.+++.+..++.-.
T Consensus 71 -~~~~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~~~~e~~ 148 (160)
T PF11865_consen 71 -PMMGISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPDSLREFY 148 (160)
T ss_pred -hhccCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCHHHHHHH
Confidence 11111112334444557888999888644445566778888777754222223444 3457788888886666666665
Q ss_pred HHHHHHHh
Q psy14164 247 CFLIACLC 254 (361)
Q Consensus 247 ~~ll~~L~ 254 (361)
.+-++.|+
T Consensus 149 ~~qL~~lv 156 (160)
T PF11865_consen 149 FQQLADLV 156 (160)
T ss_pred HHHHHHHH
Confidence 55555553
No 363
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=37.04 E-value=82 Score=27.16 Aligned_cols=87 Identities=14% Similarity=0.161 Sum_probs=67.4
Q ss_pred CChhhHHHHHhhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcC--CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHH
Q psy14164 214 ENEECLKEFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTD--NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEH 290 (361)
Q Consensus 214 ~~~~~~~~f~~~ggi~~Lv~lL~s-~~~~v~~kA~~ll~~L~~~--~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~ 290 (361)
+++...+-|.+.+-+..+++.++. ....++......++=|..+ .+...-++.+.+.+..++..=-. ..+.++...
T Consensus 14 ~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d--~~~ee~l~y 91 (149)
T PF09758_consen 14 NDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFD--FSDEEVLSY 91 (149)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCC--CCcchhHHH
Confidence 456688899999999999999987 5788888888888877765 55667788888998888865322 227788888
Q ss_pred HHHHHHHHHhcC
Q psy14164 291 LLSALASLIKDS 302 (361)
Q Consensus 291 al~aL~~L~~~~ 302 (361)
-...|..|+-.-
T Consensus 92 YIsfLK~lSlkl 103 (149)
T PF09758_consen 92 YISFLKTLSLKL 103 (149)
T ss_pred HHHHHHHHHhhc
Confidence 888888887543
No 364
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=36.84 E-value=2.2e+02 Score=22.76 Aligned_cols=69 Identities=12% Similarity=0.202 Sum_probs=46.6
Q ss_pred ChHHHHHHhhcc---CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccC--CHHHHHHHHHHHHHHhcC
Q psy14164 183 DFLNLLLTSIEH---DSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTD 256 (361)
Q Consensus 183 g~l~~Ll~LL~~---~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~--~~~v~~kA~~ll~~L~~~ 256 (361)
|.+..+-..+.+ ..+...|+.++.+|..+++-.......+ .|.+.-+|++. ...++..|+.+...++..
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~-----~pQI~a~L~sal~~~~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSA-----RPQIMACLQSALEIPELREEALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Confidence 556666665554 4567899999999999998544444333 45566666653 447888887777777665
No 365
>KOG1788|consensus
Probab=36.66 E-value=80 Score=35.80 Aligned_cols=81 Identities=20% Similarity=0.161 Sum_probs=67.4
Q ss_pred HHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHH
Q psy14164 219 LKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASL 298 (361)
Q Consensus 219 ~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L 298 (361)
.+.++.+|.+..|++.+-...+|+|.+-..++.++++.+|...+.+.+.|+++.|++++.-...+...+..+++..+..+
T Consensus 901 k~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIvemL 980 (2799)
T KOG1788|consen 901 KQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEML 980 (2799)
T ss_pred HhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHHH
Confidence 56677899999999988888999999999999999999998899999999999999887654344677777777766555
Q ss_pred H
Q psy14164 299 I 299 (361)
Q Consensus 299 ~ 299 (361)
.
T Consensus 981 g 981 (2799)
T KOG1788|consen 981 G 981 (2799)
T ss_pred h
Confidence 4
No 366
>KOG2149|consensus
Probab=36.50 E-value=3.4e+02 Score=27.26 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=78.7
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHH
Q psy14164 184 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQ 262 (361)
Q Consensus 184 ~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~ 262 (361)
-+.-|+..+.+ .+..+|..|++-|--+..+++.... .--..+++.+.....+.+..+|...-.++-.+... .++...
T Consensus 59 tlkeLl~qlkH-hNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKH-HNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cHHHHHhhhcC-chHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhc
Confidence 35667778887 5789999999999998887665433 22356777777777777888888777777765543 233322
Q ss_pred HHHhCCc-HHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHH
Q psy14164 263 VLLSMGM-VEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQ 306 (361)
Q Consensus 263 ~l~~~g~-i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~ 306 (361)
.++ ++ .+.+-..+..- .+.+|+-++..|..++..+|..+
T Consensus 137 p~~--~l~~~yi~~AMThi---t~~i~~dslkfL~~Ll~~~~p~~ 176 (393)
T KOG2149|consen 137 PMV--SLLMPYISSAMTHI---TPEIQEDSLKFLSLLLERYPDTF 176 (393)
T ss_pred chH--HHHHHHHHHHHhhc---cHHHHHhhHHHHHHHHHHcChHH
Confidence 222 22 22233333444 78999999999999999996543
No 367
>KOG2073|consensus
Probab=36.50 E-value=6.4e+02 Score=28.06 Aligned_cols=139 Identities=19% Similarity=0.207 Sum_probs=80.1
Q ss_pred CHHHHHHhhc-CCCHHHHHHHHHHHHHHhhc-----CHH-HHHHHHhcChHHHHHH-hhccCCCHHHHHHHHHHHHHHhc
Q psy14164 142 GLPVLQPLLE-GSDPELRWRAAETVADIVQN-----NPF-SQNFIIQTDFLNLLLT-SIEHDSNTTVQVKSLYAVSCLVR 213 (361)
Q Consensus 142 g~~~Lv~LL~-s~~~~vr~~Aa~~Lg~iaqn-----n~~-~q~~v~~~g~l~~Ll~-LL~~~~~~~v~~~Al~ALS~l~r 213 (361)
.++.++.+|. +.+++++..|...|..+++. .|. .+..+...+.+..|+. +|..+...++-+..+..+-.++-
T Consensus 191 li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~i~vlI~ll~ 270 (838)
T KOG2073|consen 191 LIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSGIIVLISLLN 270 (838)
T ss_pred HHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHHHHHHHHhcC
Confidence 4777777764 45578888888888888877 332 4445555666666665 34433344454444444444321
Q ss_pred C---------------ChhhH-HHHH---hhCc----HHHHHHhhccC----------------CHHHHHHHHHHHHHHh
Q psy14164 214 E---------------NEECL-KEFI---KRDG----FSVLLRCIQSK----------------KEKLVIKSCFLIACLC 254 (361)
Q Consensus 214 ~---------------~~~~~-~~f~---~~gg----i~~Lv~lL~s~----------------~~~v~~kA~~ll~~L~ 254 (361)
- +++.. ..++ -.++ ++-++++|..+ =-+-|.|.|-+|+.|+
T Consensus 271 ~~r~~~~~~~~~~i~~q~~~~~d~~~~~~~l~~~~p~L~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rlki~eliaelL 350 (838)
T KOG2073|consen 271 PRRDTVETNSTTTILSQPPSERDPIVLNELLGAMEPRLGDFVQLLLEPEKLDLLETTYGELEPPLGFERLKIVELIAELL 350 (838)
T ss_pred cccccccccceeeeecCCccccCccchHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhccCCCcchHHHHHHHHHHHHh
Confidence 0 00000 0000 0112 12233333322 2367889999999888
Q ss_pred cC-CchHHHHHHhCCcHHHHHHhccCC
Q psy14164 255 TD-NNQVKQVLLSMGMVEQMCVLIDIE 280 (361)
Q Consensus 255 ~~-~~~~~~~l~~~g~i~~Lv~lL~~~ 280 (361)
.. +......+...+++..++.+...-
T Consensus 351 ~~~~~~l~~el~~~~~~~r~lD~f~~y 377 (838)
T KOG2073|consen 351 HCSNMTLLNELRAEGIAERLLDLFFEY 377 (838)
T ss_pred ccCcHHHHhHHhhhhhHHHHHHHHHhc
Confidence 76 566777888888888888887654
No 368
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=36.08 E-value=77 Score=30.25 Aligned_cols=54 Identities=11% Similarity=0.072 Sum_probs=43.0
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc--------------hHHHHHHhCCcHHHHHHhccCC
Q psy14164 227 GFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN--------------QVKQVLLSMGMVEQMCVLIDIE 280 (361)
Q Consensus 227 gi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~--------------~~~~~l~~~g~i~~Lv~lL~~~ 280 (361)
-+..+++.|.+++...|.+|+.+|.+++.+.- .....+.+.|+++.|+.+|...
T Consensus 61 ~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~~ 128 (293)
T PF07923_consen 61 FIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKMF 128 (293)
T ss_pred HHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34577788888899999999999999998621 2345778999999999998754
No 369
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=35.86 E-value=2.4e+02 Score=22.90 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=33.6
Q ss_pred CcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhC
Q psy14164 226 DGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSM 267 (361)
Q Consensus 226 ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~ 267 (361)
=|++.|+..|.+++.+|...|..++...+... ...+.++..
T Consensus 8 w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~~ 48 (115)
T PF14663_consen 8 WGIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVSL 48 (115)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHHc
Confidence 37999999999999999999999999988765 555555543
No 370
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=35.61 E-value=4.3e+02 Score=25.75 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=15.7
Q ss_pred cCCCCHHhHHHHHHHHHhhc
Q psy14164 74 AASMNEANRGFLLDALNSMM 93 (361)
Q Consensus 74 ~~~~s~e~~~~L~eal~~~~ 93 (361)
.+.++++.++-+-..|..+.
T Consensus 34 L~~L~~~e~~~l~~~ma~l~ 53 (339)
T PRK05686 34 LKHLTEEEVQKLSAAMANLR 53 (339)
T ss_pred HHcCCHHHHHHHHHHHHcCC
Confidence 55788888888888888886
No 371
>KOG1992|consensus
Probab=35.54 E-value=6.6e+02 Score=27.92 Aligned_cols=261 Identities=11% Similarity=0.066 Sum_probs=137.0
Q ss_pred CCCCCCHHHHHHHHhhcCCCCCCCC-CC----ccc-----ccCCCCHHhHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q psy14164 43 PRQPSNLQDLLRYAVEAGSRSRAQE-AP----NIN-----RAASMNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQD 112 (361)
Q Consensus 43 ~~~~~~l~~LL~w~~~~s~~~~~~~-~~----~~~-----~~~~~s~e~~~~L~eal~~~~~~~~~~mk~~l~~L~~~~~ 112 (361)
.-=|..|..||-.-++.-.+.|-.. .+ +-+ ++...|.+=...++-.|..+...=.+++++.++.....+.
T Consensus 118 ~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~ 197 (960)
T KOG1992|consen 118 RDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHAN 197 (960)
T ss_pred cccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhccc
Confidence 3345667777776666443322210 00 111 1223444444555666666654446677777777765544
Q ss_pred CHHHHHHHHHH-------HHHhhcCcccHHHHHHC--CCHHHHHHhhcCCC-------------HHHHHHHHHHHHHHhh
Q psy14164 113 QKDICIGALDN-------LSDYICSIDYANDFLKM--GGLPVLQPLLEGSD-------------PELRWRAAETVADIVQ 170 (361)
Q Consensus 113 ~~~~~~~Al~~-------L~~lve~idna~~~~~~--Gg~~~Lv~LL~s~~-------------~~vr~~Aa~~Lg~iaq 170 (361)
+....-..++. +-.|.. .|-..-|... -.++.+.++|+.++ ..+|..-|..+.--++
T Consensus 198 ~~~~l~~lf~vlll~~klfysLn~-QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~ 276 (960)
T KOG1992|consen 198 DAAALNILFGVLLLICKLFYSLNF-QDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYAT 276 (960)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhc-ccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHH
Confidence 43322222221 112221 1222222211 12455555655322 3578889999999899
Q ss_pred cCHHHHHHHHhcChHHHHHHhhccC----CCHHHHHHHHHHHHHHhcC--Ch------hhHHHH----------------
Q psy14164 171 NNPFSQNFIIQTDFLNLLLTSIEHD----SNTTVQVKSLYAVSCLVRE--NE------ECLKEF---------------- 222 (361)
Q Consensus 171 nn~~~q~~v~~~g~l~~Ll~LL~~~----~~~~v~~~Al~ALS~l~r~--~~------~~~~~f---------------- 222 (361)
..+++=+-++. ..+...|.||.+- .-..+..+|+.-|+++++- ++ .....+
T Consensus 277 kYeEef~~fl~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDe 355 (960)
T KOG1992|consen 277 KYEEEFQPFLP-DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDE 355 (960)
T ss_pred hhHHHHHhhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhH
Confidence 88877665443 3566666777542 1236778899999999873 22 111122
Q ss_pred --HhhCcHHHHHHhhccCCHHHHHH-HHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHH
Q psy14164 223 --IKRDGFSVLLRCIQSKKEKLVIK-SCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 299 (361)
Q Consensus 223 --~~~ggi~~Lv~lL~s~~~~v~~k-A~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~ 299 (361)
.+-+-+..+.+-|...|...|++ |+-++..|+.........++. +.+..++.-.......+-.-.+.+...+.+++
T Consensus 356 ElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~-~~v~~~l~~y~~nPS~nWk~kd~aiyL~tala 434 (960)
T KOG1992|consen 356 ELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFS-SEVQRLLDQYSKNPSGNWKKKDRAIYLVTALA 434 (960)
T ss_pred HHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHhccCCCccccccchhhhhhHHHH
Confidence 12345566677777777666555 556778888765333333332 22333333222222335566677777777777
Q ss_pred hcChHHH
Q psy14164 300 KDSPEAQ 306 (361)
Q Consensus 300 ~~~~~~~ 306 (361)
.....+.
T Consensus 435 ik~~t~~ 441 (960)
T KOG1992|consen 435 IKGQTAK 441 (960)
T ss_pred hhcchhh
Confidence 6654433
No 372
>COG1536 FliG Flagellar motor switch protein [Cell motility and secretion]
Probab=33.98 E-value=4.7e+02 Score=25.73 Aligned_cols=68 Identities=16% Similarity=0.163 Sum_probs=33.3
Q ss_pred hhCcHHHHHHhhccCCHHHHHH------------------HHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCCh
Q psy14164 224 KRDGFSVLLRCIQSKKEKLVIK------------------SCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDT 285 (361)
Q Consensus 224 ~~ggi~~Lv~lL~s~~~~v~~k------------------A~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~ 285 (361)
..||+....++|+.-+...... =.|.+-+|..-+.-..+.+....-=..|.-.|+.. +.
T Consensus 200 ~~gg~~~~aeIlN~~d~~~e~~il~~l~~~~~~la~~I~~kmF~Fediv~ldd~~iq~lL~~v~~~~La~aLkg~---~~ 276 (339)
T COG1536 200 KLGGIKAAAEILNLLDRGTEKTILESLEEEDPELAEEIKEKMFVFEDIVLLDDRSIQRLLREVDKEDLAIALKGA---SE 276 (339)
T ss_pred ccccHhHHHHHHHhcchhHHHHHHHHHhhcCHHHHHHHHHHHhhHHHHHhccHHHHHHHHHHcCHHHHHHHHcCC---CH
Confidence 4678877777776544333222 23444444444333333333333334444445544 55
Q ss_pred hHHHHHHHH
Q psy14164 286 EMNEHLLSA 294 (361)
Q Consensus 286 ~~~e~al~a 294 (361)
.++++.+..
T Consensus 277 ~lrekilsn 285 (339)
T COG1536 277 ELREKILSN 285 (339)
T ss_pred HHHHHHHHh
Confidence 666665443
No 373
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=33.88 E-value=3e+02 Score=23.50 Aligned_cols=101 Identities=16% Similarity=0.256 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhcCChhhHH---------HHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHH-hCC
Q psy14164 199 TVQVKSLYAVSCLVRENEECLK---------EFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLL-SMG 268 (361)
Q Consensus 199 ~v~~~Al~ALS~l~r~~~~~~~---------~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~-~~g 268 (361)
..+.-++..|-++..++.+... ..++....+.|.+.+.+.+..+-..++.++..|... .+..+. +.+
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~---~~~~Lk~ele 113 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR---FRSHLKLELE 113 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 4556666666666655444333 334566777888888777899999999999999854 333332 223
Q ss_pred c-HHHHHH-hccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164 269 M-VEQMCV-LIDIEDALDTEMNEHLLSALASLIKDSP 303 (361)
Q Consensus 269 ~-i~~Lv~-lL~~~~~~d~~~~e~al~aL~~L~~~~~ 303 (361)
+ +..++. +|.++. .....++.++.++..+.+...
T Consensus 114 ~~l~~i~~~il~~~~-~~~~~k~~~Le~l~~l~~~p~ 149 (168)
T PF12783_consen 114 VFLSHIILRILESDN-SSLWQKELALEILRELCKDPQ 149 (168)
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHHHHhChh
Confidence 2 455555 666651 124677889999988886554
No 374
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=33.05 E-value=2.6e+02 Score=24.69 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=37.7
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHhcCC-c---------hHHHHH-----------HhCCcHHHHHHhccCCCCCChhHH
Q psy14164 230 VLLRCIQSKKEKLVIKSCFLIACLCTDN-N---------QVKQVL-----------LSMGMVEQMCVLIDIEDALDTEMN 288 (361)
Q Consensus 230 ~Lv~lL~s~~~~v~~kA~~ll~~L~~~~-~---------~~~~~l-----------~~~g~i~~Lv~lL~~~~~~d~~~~ 288 (361)
.+++..-..-.+||..|..++..+.... + .....+ ....+.+.++.+|..+ .++
T Consensus 11 ~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~~-----~y~ 85 (193)
T PF12612_consen 11 GLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEASLNWSSSSEYFPRLVKLLDLP-----EYR 85 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHcccccccccccCCHHHHHHHHHHHhccH-----HHH
Confidence 3444444456778888888887777433 1 112211 1223567777777654 667
Q ss_pred HHHHHHHHHHHhc
Q psy14164 289 EHLLSALASLIKD 301 (361)
Q Consensus 289 e~al~aL~~L~~~ 301 (361)
..++..|..=+..
T Consensus 86 ~~ll~Glv~S~G~ 98 (193)
T PF12612_consen 86 YSLLSGLVVSAGG 98 (193)
T ss_pred HHHHhHHHhcCCC
Confidence 7776666544443
No 375
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=32.43 E-value=1.2e+02 Score=24.71 Aligned_cols=61 Identities=13% Similarity=0.204 Sum_probs=43.8
Q ss_pred HHHHHHhhccCC----HHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHH
Q psy14164 228 FSVLLRCIQSKK----EKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL 295 (361)
Q Consensus 228 i~~Lv~lL~s~~----~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL 295 (361)
+..+.++|.... ..+...+..++.+.+.. -....+.+.++++.+.++|..+ .+++.|+.+|
T Consensus 84 ~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~--~~~~~i~~~~~l~~~~~~l~~~-----~~~~~A~~cl 148 (148)
T PF08389_consen 84 LEILSQILSQSSSEANEELVKAALKCLKSWISW--IPIELIINSNLLNLIFQLLQSP-----ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTT--S-HHHHHSSSHHHHHHHHTTSC-----CCHHHHHHHH
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHh--CCHHHhccHHHHHHHHHHcCCH-----HHHHHHHHhC
Confidence 445555555432 88899999999998874 2345666788999999999654 5688888765
No 376
>KOG0889|consensus
Probab=31.47 E-value=5.6e+02 Score=33.13 Aligned_cols=160 Identities=12% Similarity=0.052 Sum_probs=88.8
Q ss_pred CCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-HHHHHHHHhc-C--hHHHHHHhhccCCCHHHHHHHHHHHHHHhcCC
Q psy14164 140 MGGLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQNFIIQT-D--FLNLLLTSIEHDSNTTVQVKSLYAVSCLVREN 215 (361)
Q Consensus 140 ~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn-~~~q~~v~~~-g--~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~ 215 (361)
.+.+.+++.-|.+++..||..+..+|.+++... +...+.+.-. . .+|+..+.+.. ..-.++..-+-++-..++-.
T Consensus 1125 ~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~-~p~~~qig~vd~~~fC~~l~ 1203 (3550)
T KOG0889|consen 1125 MNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRA-LPFTIQIGHLDAITFCLSLG 1203 (3550)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccccccc-CCHHHHhhhHHHHHHHHHcC
Confidence 356888999999999999999999999998764 2222111100 1 12333333333 34466666777766555544
Q ss_pred hhh-------HHHHHhhCcHH-----H---HHHhhccC----CHHHHHHHHHHHHHHhcCCchH--HHHHHhCCcHHHHH
Q psy14164 216 EEC-------LKEFIKRDGFS-----V---LLRCIQSK----KEKLVIKSCFLIACLCTDNNQV--KQVLLSMGMVEQMC 274 (361)
Q Consensus 216 ~~~-------~~~f~~~ggi~-----~---Lv~lL~s~----~~~v~~kA~~ll~~L~~~~~~~--~~~l~~~g~i~~Lv 274 (361)
|.. ...+...+++. . +......+ ..++|..+..++...+...+.. ...=...+.+..+.
T Consensus 1204 p~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~f 1283 (3550)
T KOG0889|consen 1204 PCLFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFF 1283 (3550)
T ss_pred CcccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHH
Confidence 332 11111111111 1 22222211 2344666666555444322211 11112245677778
Q ss_pred HhccCCCCCChhHHHHHHHHHHHHHhcCh
Q psy14164 275 VLIDIEDALDTEMNEHLLSALASLIKDSP 303 (361)
Q Consensus 275 ~lL~~~~~~d~~~~e~al~aL~~L~~~~~ 303 (361)
.-|.++ .+++.+.+..++.......+
T Consensus 1284 k~l~~~---~~Ei~~~~~~~l~~v~~~~~ 1309 (3550)
T KOG0889|consen 1284 KSLYKR---SSELIEVALEGLRKVLAQDV 1309 (3550)
T ss_pred HHHcCC---hHHHHHHHHHHHHhhhhccc
Confidence 888888 89999999999998887653
No 377
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=31.44 E-value=1.3e+02 Score=29.09 Aligned_cols=76 Identities=14% Similarity=0.088 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhhcCcccH--HHHHHCCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHH
Q psy14164 114 KDICIGALDNLSDYICSIDYA--NDFLKMGGLPVLQPLLEGS--DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLL 189 (361)
Q Consensus 114 ~~~~~~Al~~L~~lve~idna--~~~~~~Gg~~~Lv~LL~s~--~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll 189 (361)
+++..-.+..|+.+..+.+.. .+. ...-...++.++.|+ ...+|..|..++..+...+|.. +...++.-+.
T Consensus 176 ~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~ 250 (339)
T PF12074_consen 176 EEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLW 250 (339)
T ss_pred HhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHH
Confidence 455555666666665444322 111 112245677888887 8999999999999999999874 3344566666
Q ss_pred Hhhcc
Q psy14164 190 TSIEH 194 (361)
Q Consensus 190 ~LL~~ 194 (361)
+.+..
T Consensus 251 ~~l~~ 255 (339)
T PF12074_consen 251 KWLSS 255 (339)
T ss_pred HHHHh
Confidence 66653
No 378
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=30.71 E-value=5.1e+02 Score=25.34 Aligned_cols=100 Identities=14% Similarity=0.164 Sum_probs=58.5
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccC-----CCHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy14164 149 LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD-----SNTTVQVKSLYAVSCLVRENEECLKEFI 223 (361)
Q Consensus 149 LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~-----~~~~v~~~Al~ALS~l~r~~~~~~~~f~ 223 (361)
++...+...|.+|+.+|.+ .+..++ .+|.++..+... .+..+....+..++++..+ +..+-.=+
T Consensus 206 l~dEs~~~~r~aAl~sLr~----dsGlhQ------LvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N-~~iFvdPY 274 (450)
T COG5095 206 LLDESDEQTRDAALESLRN----DSGLHQ------LVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKN-KYIFVDPY 274 (450)
T ss_pred HHHHHHHHHHHHHHHHhcc----CccHHH------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcC-CceeecHH
Confidence 4556677788888877763 444443 467777776532 2334445566666777664 22221112
Q ss_pred hhCcHHHHHHhhc-----cCC-----HHHHHHHHHHHHHHhcCCch
Q psy14164 224 KRDGFSVLLRCIQ-----SKK-----EKLVIKSCFLIACLCTDNNQ 259 (361)
Q Consensus 224 ~~ggi~~Lv~lL~-----s~~-----~~v~~kA~~ll~~L~~~~~~ 259 (361)
-+-.+|.++.||- +.+ ..+|.-|++++.+.+..-+.
T Consensus 275 ~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~ 320 (450)
T COG5095 275 LHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSS 320 (450)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhH
Confidence 2445566665542 222 34899999999998876443
No 379
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=30.32 E-value=1.4e+02 Score=20.25 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=23.6
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHH
Q psy14164 145 VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI 179 (361)
Q Consensus 145 ~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v 179 (361)
.++++|.++++..|..-+.+|+++.+=+|.-++.+
T Consensus 11 vl~~fl~~~~~~~~~~llpvi~tlL~fs~~e~~~i 45 (46)
T PF01465_consen 11 VLLQFLESREPSEREQLLPVIATLLKFSPEEKQKI 45 (46)
T ss_dssp HHHHHHTTSS---HHHHHHHHHHHTT--HHHHHHH
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHHCCCHHHHHhh
Confidence 46788888888889999999999988777665543
No 380
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=29.76 E-value=6.8e+02 Score=26.29 Aligned_cols=132 Identities=15% Similarity=0.178 Sum_probs=75.0
Q ss_pred CHHhHHHHHHHHHhhcCCHHHHHHHHHHHHhcCC-C----CHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhh-c
Q psy14164 78 NEANRGFLLDALNSMMVNVGAELEKIIKTLKENQ-D----QKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLL-E 151 (361)
Q Consensus 78 s~e~~~~L~eal~~~~~~~~~~mk~~l~~L~~~~-~----~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL-~ 151 (361)
.+.-+.+.++||.+....+.....+.+..+.... . +......-|.+|...+..+|+. .. +-+..++++. .
T Consensus 9 ~~~~~~~V~~AL~~~~~Gd~~~Y~~L~~~l~~~~~~~d~~~~~~l~~~L~~L~~~Vs~Ld~~--~~--~LV~ail~~~W~ 84 (563)
T PF05327_consen 9 DEMYKSFVRSALESHEKGDSSQYDELVEQLSDPSESKDAISVSQLIRWLKALSSCVSLLDSS--CK--QLVEAILSLNWL 84 (563)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHS-TT-TTS--HHHHHHHHHHHHHGGGGG-SC--CH--HHHHHHHT-TGG
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccccCcccccHHHHHHHHHHHHHHHHHhhhH--HH--HHHHHHHcCCCC
Confidence 3446789999999998556666677777773222 1 2457888889999988888754 11 1244444431 1
Q ss_pred CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCC-------------HHHHHHHHHHHHHHhcCChhh
Q psy14164 152 GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSN-------------TTVQVKSLYAVSCLVRENEEC 218 (361)
Q Consensus 152 s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~-------------~~v~~~Al~ALS~l~r~~~~~ 218 (361)
.-++.++..-...|++++..++..-.. ++..|++.+..... ..+....-.+|..|++-.|.+
T Consensus 85 ~~~~~~v~~y~~Fl~~Lvsa~~~yl~~-----vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH~~L~~Il~lvP~s 159 (563)
T PF05327_consen 85 GRDEDFVEAYIQFLINLVSAQPKYLSP-----VLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVHDALQKILRLVPTS 159 (563)
T ss_dssp GS-HHHHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHGGGS-HHHHHH---------------HHHHHHHHHHH-GGG
T ss_pred CCCHHHHHHHHHHHHHHHHhhHHHHHH-----HHHHHHHhccCCCccccccchhhhhhhhhhHHHHHHHHHHHHHHcCCC
Confidence 346778888888899988777765544 45667776654211 122234556666666655544
No 381
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=29.67 E-value=2.2e+02 Score=24.70 Aligned_cols=78 Identities=15% Similarity=0.222 Sum_probs=51.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q psy14164 145 VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIK 224 (361)
Q Consensus 145 ~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~ 224 (361)
.+.....|++.=+|..|.-++.....+... - ...+..+-.++. +.+.-|++...|+|+-+...++.....|+.
T Consensus 109 ~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~-~-----~~~l~~~~~~~~-d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~ 181 (197)
T cd06561 109 LLEEWAKSENEWVRRAAIVLLLRLIKKETD-F-----DLLLEIIERLLH-DEEYFVQKAVGWALREYGKKDPERVIAFLE 181 (197)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHhccc-H-----HHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 455567788888887777766665543000 0 112333333333 356689999999999999999999888887
Q ss_pred hCcHH
Q psy14164 225 RDGFS 229 (361)
Q Consensus 225 ~ggi~ 229 (361)
..+..
T Consensus 182 ~~~~~ 186 (197)
T cd06561 182 KNGLS 186 (197)
T ss_pred HHHHh
Confidence 76654
No 382
>KOG1788|consensus
Probab=28.91 E-value=7.8e+02 Score=28.60 Aligned_cols=144 Identities=15% Similarity=0.165 Sum_probs=93.5
Q ss_pred ChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC---Cch
Q psy14164 183 DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD---NNQ 259 (361)
Q Consensus 183 g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~---~~~ 259 (361)
.++..|-..+-...++..+...+.-+-.|-..++.+.....+.--++.++.-|......+|.+..-+|-+-+.. -|.
T Consensus 466 eAvqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPe 545 (2799)
T KOG1788|consen 466 EAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPE 545 (2799)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcH
Confidence 35555555544445667888888888888888888877777778899999999999999999988887765543 121
Q ss_pred HHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHHh---hcChhhhHHH
Q psy14164 260 VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEK---HAGNEVYHKE 336 (361)
Q Consensus 260 ~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~---l~~~~e~~~e 336 (361)
+. +-.||-+|+.+ ....+....+.....+.....+-.+..|. .++.+.|+.+++. +.+.+.|...
T Consensus 546 --qE------LlSLCvLLqqp--IssalkhtIlsffvKLIsfDqqyKkvlRE--VGvLevLqddlkqhkll~gpdqysgv 613 (2799)
T KOG1788|consen 546 --QE------LLSLCVLLQQP--ISSALKHTILSFFVKLISFDQQYKKVLRE--VGVLEVLQDDLKQHKLLRGPDQYSGV 613 (2799)
T ss_pred --HH------HHHHHHHhcch--hhHHHHHHHHHHHHHHhhHHHHHHHHHHH--hhHHHHHHHHHHHhhhccCcchhhhH
Confidence 12 23577888876 23456666666666666554432222333 2566778877764 3344456555
Q ss_pred HH
Q psy14164 337 LE 338 (361)
Q Consensus 337 ~~ 338 (361)
.+
T Consensus 614 se 615 (2799)
T KOG1788|consen 614 SE 615 (2799)
T ss_pred HH
Confidence 44
No 383
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=27.18 E-value=6.8e+02 Score=25.46 Aligned_cols=176 Identities=16% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCcccHHHHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCH
Q psy14164 119 GALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNT 198 (361)
Q Consensus 119 ~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~ 198 (361)
.||+.|..++........|.. .|+.+|+|++..=|..|+-+|..-+...........-....+.|..+|..+ ..
T Consensus 109 ~ALG~l~~~~~~~~~~~~~~~-----~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~-~~ 182 (441)
T PF12054_consen 109 KALGLLLSYWPESSLQEIFQP-----LLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP-EP 182 (441)
T ss_pred HHHHHHHHhcccchHHHHHHH-----HHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC-CC
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhhCc------------------------------------HHHHHHhhccCCHH-
Q psy14164 199 TVQVKSLYAVSCLVRENEECLKEFIKRDG------------------------------------FSVLLRCIQSKKEK- 241 (361)
Q Consensus 199 ~v~~~Al~ALS~l~r~~~~~~~~f~~~gg------------------------------------i~~Lv~lL~s~~~~- 241 (361)
..=......+..+-..+..-...|.+.|- ++.+...+......
T Consensus 183 ~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~~~~k~~ 262 (441)
T PF12054_consen 183 PYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLSPSQKLS 262 (441)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcCCcccch
Q ss_pred -------HHHHHHHHHHHHhcCCchHHHHHHh----------------CCcHHHHHHhccCCCCCChhHHHHHHHHHHHH
Q psy14164 242 -------LVIKSCFLIACLCTDNNQVKQVLLS----------------MGMVEQMCVLIDIEDALDTEMNEHLLSALASL 298 (361)
Q Consensus 242 -------v~~kA~~ll~~L~~~~~~~~~~l~~----------------~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L 298 (361)
-|.+...++..+-......--.+.. .-+|++|++-++..+ +..+|..+..+|..|
T Consensus 263 a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KLnPiIrpLMdSIK~Ee--n~~LQ~rsA~slA~L 340 (441)
T PF12054_consen 263 ALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKKLNPIIRPLMDSIKREE--NELLQQRSAESLARL 340 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHhhccc--cHHHHHHHHHHHHHH
Q ss_pred HhcC
Q psy14164 299 IKDS 302 (361)
Q Consensus 299 ~~~~ 302 (361)
+..+
T Consensus 341 i~~~ 344 (441)
T PF12054_consen 341 IQLC 344 (441)
T ss_pred HHHH
No 384
>KOG1525|consensus
Probab=27.18 E-value=3.4e+02 Score=31.64 Aligned_cols=161 Identities=14% Similarity=0.096 Sum_probs=92.9
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhcCcccHHHHHH-CCCHHHHHHhhcCCCHHHHHHH
Q psy14164 85 LLDALNSMMVNVGAELEKIIKTLKENQ--DQKDICIGALDNLSDYICSIDYANDFLK-MGGLPVLQPLLEGSDPELRWRA 161 (361)
Q Consensus 85 L~eal~~~~~~~~~~mk~~l~~L~~~~--~~~~~~~~Al~~L~~lve~idna~~~~~-~Gg~~~Lv~LL~s~~~~vr~~A 161 (361)
.++.+-.+-...++.+--++..|...- +.++.++.|...+..+..+.+.... -. -..|...+.=+..-+++||..+
T Consensus 242 ~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~ 320 (1266)
T KOG1525|consen 242 YHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMEC 320 (1266)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhH
Confidence 445544444344555555555555433 4468899999998888765442222 00 1134455555667889999999
Q ss_pred HHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHH
Q psy14164 162 AETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEK 241 (361)
Q Consensus 162 a~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~ 241 (361)
...+..+-.|||....... +-..++... .|+.+|....-.+--+. -......++.. .+..+.+-+...-.+
T Consensus 321 v~~~~~~l~~~~~~~~~~~----~~~~l~~~~--~D~~~rir~~v~i~~~~--v~~~~l~~~~~-ll~~~~eR~rDKk~~ 391 (1266)
T KOG1525|consen 321 VESIKQCLLNNPSIAKAST----ILLALRERD--LDEDVRVRTQVVIVACD--VMKFKLVYIPL-LLKLVAERLRDKKIK 391 (1266)
T ss_pred HHHhHHHHhcCchhhhHHH----HHHHHHhhc--CChhhhheeeEEEEEee--hhHhhhhhhHH-HHHHHHHHHhhhhHH
Confidence 9999999999998776542 222233333 34444433222211110 01111222222 556666777778889
Q ss_pred HHHHHHHHHHHHhc
Q psy14164 242 LVIKSCFLIACLCT 255 (361)
Q Consensus 242 v~~kA~~ll~~L~~ 255 (361)
||+.|..-++.|..
T Consensus 392 VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 392 VRKQAMNGLAQLYK 405 (1266)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998877776654
No 385
>KOG4524|consensus
Probab=27.17 E-value=5.6e+02 Score=28.85 Aligned_cols=81 Identities=23% Similarity=0.245 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHHhhcCc-ccHHHHHHC--CCHHHHHHhhcCCCHHHHHHHHHHHHHHhh-cCHHHHHHHHhcChHHHH
Q psy14164 113 QKDICIGALDNLSDYICSI-DYANDFLKM--GGLPVLQPLLEGSDPELRWRAAETVADIVQ-NNPFSQNFIIQTDFLNLL 188 (361)
Q Consensus 113 ~~~~~~~Al~~L~~lve~i-dna~~~~~~--Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaq-nn~~~q~~v~~~g~l~~L 188 (361)
+...++.||+.|..-+.-. +..+.|..+ -.||.++.++...++-+..+|+.+|-++.. ..+..+..+++ .++|.|
T Consensus 816 ~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~-dvlP~l 894 (1014)
T KOG4524|consen 816 SLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLE-DVLPWL 894 (1014)
T ss_pred hHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHH
Confidence 4467888888887654322 233444432 469999999999999999999999999865 45566666664 578877
Q ss_pred HHhhcc
Q psy14164 189 LTSIEH 194 (361)
Q Consensus 189 l~LL~~ 194 (361)
-.++..
T Consensus 895 ~~~~~~ 900 (1014)
T KOG4524|consen 895 KHLCQD 900 (1014)
T ss_pred HHHHHH
Confidence 766653
No 386
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=26.67 E-value=2.1e+02 Score=21.93 Aligned_cols=40 Identities=8% Similarity=0.228 Sum_probs=30.9
Q ss_pred HhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHH
Q psy14164 265 LSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQ 306 (361)
Q Consensus 265 ~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~ 306 (361)
.+..++.++..++... .+.++|+..+.++..++..+.+.+
T Consensus 14 fQ~~fL~Pf~~i~~~~--~~~~vre~il~ci~qil~~~~~~i 53 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNN--PSIDVRELILECILQILQSRGENI 53 (86)
T ss_pred HHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHHhHHHH
Confidence 3456788888886543 288999999999999998775444
No 387
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=25.95 E-value=64 Score=26.17 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=18.7
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHH
Q psy14164 142 GLPVLQPLLEGSDPELRWRAAET 164 (361)
Q Consensus 142 g~~~Lv~LL~s~~~~vr~~Aa~~ 164 (361)
+-..|+.||+|+++.||..|+..
T Consensus 48 ~r~aLl~LL~hpn~~VRl~AA~~ 70 (106)
T PF09450_consen 48 QRDALLPLLKHPNMQVRLWAAAH 70 (106)
T ss_dssp GGGGGGGGGGSS-HHHHHHHHHT
T ss_pred hHHHHHHHHcCCChhHHHHHHHH
Confidence 45889999999999999887754
No 388
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=25.76 E-value=5.7e+02 Score=24.07 Aligned_cols=142 Identities=13% Similarity=0.126 Sum_probs=78.8
Q ss_pred CCHHHHHHh----hcCCCHHHHHHHHHHHHHHhhcCH-------HHHHHHHhcChHHHHHHhhccCC---CHHHHHHHHH
Q psy14164 141 GGLPVLQPL----LEGSDPELRWRAAETVADIVQNNP-------FSQNFIIQTDFLNLLLTSIEHDS---NTTVQVKSLY 206 (361)
Q Consensus 141 Gg~~~Lv~L----L~s~~~~vr~~Aa~~Lg~iaqnn~-------~~q~~v~~~g~l~~Ll~LL~~~~---~~~v~~~Al~ 206 (361)
|.++-|..+ |.|+. --..+..++..++.-.. ..+-.+.=.+.+|.++.-+.++. .......++.
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~ 137 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAE 137 (262)
T ss_pred CCchhHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 455555443 33333 34567777777765311 11212222346788888887643 1244567778
Q ss_pred HHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCH----HHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCCC
Q psy14164 207 AVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKE----KLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIED 281 (361)
Q Consensus 207 ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~----~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~ 281 (361)
+|+.++... ...++..++.....+.. ..-..++ .+|... .|+. +...+..|+.+|.++
T Consensus 138 ~La~~a~~~--------~~~~La~il~~ya~~~fr~~~dfl~~v~---~~l~~~f~P~~-----~~~~l~~Ll~lL~n~- 200 (262)
T PF14225_consen 138 ALAQVAEAQ--------GLPNLARILSSYAKGRFRDKDDFLSQVV---SYLREAFFPDH-----EFQILTFLLGLLENG- 200 (262)
T ss_pred HHHHHHHhC--------CCccHHHHHHHHHhcCCCCHHHHHHHHH---HHHHHHhCchh-----HHHHHHHHHHHHhCC-
Confidence 888887421 12344444444443332 2222222 233222 1222 123566788999887
Q ss_pred CCChhHHHHHHHHHHHHHhcCh
Q psy14164 282 ALDTEMNEHLLSALASLIKDSP 303 (361)
Q Consensus 282 ~~d~~~~e~al~aL~~L~~~~~ 303 (361)
-.-++.+++..|..+...-+
T Consensus 201 --~~w~~~~~L~iL~~ll~~~d 220 (262)
T PF14225_consen 201 --PPWLRRKTLQILKVLLPHVD 220 (262)
T ss_pred --cHHHHHHHHHHHHHHhcccc
Confidence 88999999999999997654
No 389
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=25.64 E-value=5.1e+02 Score=30.75 Aligned_cols=98 Identities=16% Similarity=0.186 Sum_probs=60.7
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhcC-HHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhCc
Q psy14164 149 LLEGSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDG 227 (361)
Q Consensus 149 LL~s~~~~vr~~Aa~~Lg~iaqnn-~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~gg 227 (361)
||.|+++.|+..+...-..+-... ..+|+. ++..|+..+-++.+ .-...|+..|..|+..++.....|. .-
T Consensus 443 Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqe-----Vv~~Lvthi~sg~~-~ev~~aL~vL~~L~~~~~~~l~~fa--~~ 514 (1426)
T PF14631_consen 443 LLRSKEPSVREFGSHLYKYLFKEFDSYCQQE-----VVGALVTHIGSGNS-QEVDAALDVLCELAEKNPSELQPFA--TF 514 (1426)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHSS-HHHHHH-----HHHHHHHHHHH--H-HHHHHHHHHHHHHHHH-HHHHHHTH--HH
T ss_pred HHhCCCHHHHHHHHHHHHHHHhhccchhHHH-----HHHHHHHHHcCCcH-HHHHHHHHHHHHHHhccHHHHHHHH--HH
Confidence 567899999999998888877654 335655 56678887765444 4446899999999988777666553 12
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHh
Q psy14164 228 FSVLLRCIQSKKEKLVIKSCFLIACLC 254 (361)
Q Consensus 228 i~~Lv~lL~s~~~~v~~kA~~ll~~L~ 254 (361)
+..+++.|..=+..--++...+++.|+
T Consensus 515 l~giLD~l~~Ls~~qiR~lf~il~~La 541 (1426)
T PF14631_consen 515 LKGILDYLDNLSLQQIRKLFDILCTLA 541 (1426)
T ss_dssp HHGGGGGGGG--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 222333333333333444555556555
No 390
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=25.53 E-value=4.2e+02 Score=22.55 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHhhcCHHHH---------HHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhh
Q psy14164 155 PELRWRAAETVADIVQNNPFSQ---------NFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKR 225 (361)
Q Consensus 155 ~~vr~~Aa~~Lg~iaqnn~~~q---------~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ 225 (361)
...|..++++|-++-.++...- ..+++..+.+.|++.+.+. +..+-..++..+..+........+.=+ .
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~-~~~i~~~slri~~~l~~~~~~~Lk~el-e 113 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSS-DFPIFSRSLRIFLTLLSRFRSHLKLEL-E 113 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3455556666666555433211 1245667888888888874 478888899988888865433322111 1
Q ss_pred CcHHHHHH-hhccCC--HHHHHHHHHHHHHHhcCCchHHHHHHhC
Q psy14164 226 DGFSVLLR-CIQSKK--EKLVIKSCFLIACLCTDNNQVKQVLLSM 267 (361)
Q Consensus 226 ggi~~Lv~-lL~s~~--~~v~~kA~~ll~~L~~~~~~~~~~l~~~ 267 (361)
--++.++. ++.++. ..-|.-+..++..++....-..+.+++.
T Consensus 114 ~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf~NY 158 (168)
T PF12783_consen 114 VFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLFVNY 158 (168)
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHHHHc
Confidence 12333433 566543 5667778888999887544444444443
No 391
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=25.33 E-value=2.8e+02 Score=22.52 Aligned_cols=97 Identities=15% Similarity=0.057 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHH-HHhhccCcchHHHHHH
Q psy14164 243 VIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEA-QSLCRLEPLNLKFKLN 321 (361)
Q Consensus 243 ~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~-~~~~~~~~l~l~~~Le 321 (361)
-.+...-|+.++.+. .... .++..|..-|......+....-+||..|..|+.+++.. +..++... ..++
T Consensus 20 ~~~~l~eIa~~t~~~-~~~~-----~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~----~~I~ 89 (125)
T PF01417_consen 20 PGKLLAEIAQLTYNS-KDCQ-----EIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHI----DIIR 89 (125)
T ss_dssp -HHHHHHHHHHTTSC-HHHH-----HHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTH----HHHH
T ss_pred CHHHHHHHHHHHhcc-ccHH-----HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHH----HHHh
Confidence 334444455555433 2222 23455666661111126677889999999999877653 33342221 1222
Q ss_pred HHHH--hh--cChhhhHHHHHHHHHHHHHhcC
Q psy14164 322 FIKE--KH--AGNEVYHKELEYVNSVLTEVFE 349 (361)
Q Consensus 322 ~~~~--~l--~~~~e~~~e~~~~~~il~~~f~ 349 (361)
.... .. .+.+.+..+++.|..|++-++.
T Consensus 90 ~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d 121 (125)
T PF01417_consen 90 ELQDFQYVDPKGKDQGQNVREKAKEILELLND 121 (125)
T ss_dssp GGGG---BBTTSTBHHHHHHHHHHHHHHHHTS
T ss_pred hcceeeccCCCCccHHHHHHHHHHHHHHHhCC
Confidence 1110 11 2234556789999999988764
No 392
>KOG1992|consensus
Probab=25.03 E-value=9.9e+02 Score=26.63 Aligned_cols=140 Identities=13% Similarity=0.169 Sum_probs=89.5
Q ss_pred HHHHHHhh-c--CCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCC-CHHHHHHHHHHHHHHhc-CChh
Q psy14164 143 LPVLQPLL-E--GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS-NTTVQVKSLYAVSCLVR-ENEE 217 (361)
Q Consensus 143 ~~~Lv~LL-~--s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~-~~~v~~~Al~ALS~l~r-~~~~ 217 (361)
++.|..+| + ++++.+|..|-++|.....+ .|..-.|++++.++. +..+|..|+-+.-|-++ +..+
T Consensus 4 le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q----------~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~ 73 (960)
T KOG1992|consen 4 LETLANYLLQTLSPDPSVRKPAERALRSLEGQ----------QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIP 73 (960)
T ss_pred HHHHHHHHHhcCCCCCccCchHHHHHHHhccC----------CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCc
Confidence 34455544 3 46799999999998876532 244556788887654 77899999999999887 3222
Q ss_pred hHHH---HHhh--C-cHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CchHHHHHHhCCcHHHHHHhccCCCCCChhHHHH
Q psy14164 218 CLKE---FIKR--D-GFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEH 290 (361)
Q Consensus 218 ~~~~---f~~~--g-gi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~ 290 (361)
+-.. +.+. . .-..++.++-+....+|.----+|+.+... -|+.-.. .++-|+.-|+++ |-.+..-
T Consensus 74 ~~~~~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWpt-----Ll~dL~~~ls~~---D~~~~~g 145 (960)
T KOG1992|consen 74 AEDSPIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPT-----LLPDLVARLSSG---DFNVING 145 (960)
T ss_pred CCCCccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHH-----HHHHHHhhcccc---chHHHHH
Confidence 2111 2211 1 234667888888899999888888888765 3433333 366777777766 5555444
Q ss_pred HHHHHHHHHh
Q psy14164 291 LLSALASLIK 300 (361)
Q Consensus 291 al~aL~~L~~ 300 (361)
++.+-.+|-+
T Consensus 146 VL~tahsiFk 155 (960)
T KOG1992|consen 146 VLVTAHSIFK 155 (960)
T ss_pred HHHHHHHHHH
Confidence 4554444554
No 393
>KOG0803|consensus
Probab=25.00 E-value=1.2e+03 Score=27.52 Aligned_cols=70 Identities=21% Similarity=0.245 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHH-hhcCCCHHHHHHHHHHHHHHhhc
Q psy14164 100 LEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQP-LLEGSDPELRWRAAETVADIVQN 171 (361)
Q Consensus 100 mk~~l~~L~~~~~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~-LL~s~~~~vr~~Aa~~Lg~iaqn 171 (361)
|+.+++.|... +.--|+.|+.+|.+++++.|.....--++-|+.++. +..+.+..||...-.++..+.+.
T Consensus 43 l~~I~kkL~Kk--D~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~ 113 (1312)
T KOG0803|consen 43 LDIIVKKLLKR--DETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTK 113 (1312)
T ss_pred HHHHHHHHhcc--ChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 56677777763 445789999999999988776655444566777765 77889999999999999998864
No 394
>KOG1791|consensus
Probab=24.92 E-value=5.3e+02 Score=30.68 Aligned_cols=188 Identities=15% Similarity=0.031 Sum_probs=105.9
Q ss_pred HHHHCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccC---CCH-HHHHHHHH-HH-H
Q psy14164 136 DFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD---SNT-TVQVKSLY-AV-S 209 (361)
Q Consensus 136 ~~~~~Gg~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~---~~~-~v~~~Al~-AL-S 209 (361)
-|+..|...++...+.+.++.+|..|+|++.-...+-....+...+.=.+-.++.+.+++ +++ -....+++ |. +
T Consensus 1434 ~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~A~~~ 1513 (1758)
T KOG1791|consen 1434 IFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFIAFFS 1513 (1758)
T ss_pred hhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHHHHHH
Confidence 688889999999999999999999999988765533222112222222455556665543 111 12222222 22 2
Q ss_pred HHhcCChh-----h------HHHHHhhCcHHHHHHhhccCCH---HHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHH
Q psy14164 210 CLVRENEE-----C------LKEFIKRDGFSVLLRCIQSKKE---KLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCV 275 (361)
Q Consensus 210 ~l~r~~~~-----~------~~~f~~~ggi~~Lv~lL~s~~~---~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~ 275 (361)
.++- .|. . ....++.-|+|.+-+.+.+... ..|.-...+++...... ...+..+..+....++.
T Consensus 1514 ~ill-~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~-~D~ql~~~~~~~~~~ls 1591 (1758)
T KOG1791|consen 1514 DILL-VPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSC-PDYQLLQIRNIFETLLS 1591 (1758)
T ss_pred HHHc-CCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCc-hhhhHHhhcCcceEeeh
Confidence 3332 221 1 2233456688888888877533 34445555555555543 45566667777777777
Q ss_pred hccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCcchHHHHHHHHHHhhc
Q psy14164 276 LIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHA 328 (361)
Q Consensus 276 lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~l~l~~~Le~~~~~l~ 328 (361)
..+++ -.+...+.-.+.+|.+-++....+.+.-.++ ++..|+...+.+-.
T Consensus 1592 f~sS~-l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~--Gl~sWi~niI~s~~ 1641 (1758)
T KOG1791|consen 1592 FYSSP-LASEESKRLILATLQKGVKFPFYAYEMLEVP--GLFSWILNIIPSSF 1641 (1758)
T ss_pred hhcch-hHHHHHHHHHHHHHHhcCCCcHHHHHHHhcc--cHHHHHHHhccccc
Confidence 77764 1122333445666666665544444444443 44568887765443
No 395
>PF12055 DUF3536: Domain of unknown function (DUF3536); InterPro: IPR021923 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is typically between 274 to 285 amino acids in length. This domain is found associated with PF03065 from PFAM.
Probab=23.98 E-value=6.5e+02 Score=24.14 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=36.4
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHhh----cCcccHHHHHHCCCHHHHH
Q psy14164 90 NSMMVNVGAELEKIIKTLKENQD---------------QKDICIGALDNLSDYI----CSIDYANDFLKMGGLPVLQ 147 (361)
Q Consensus 90 ~~~~~~~~~~mk~~l~~L~~~~~---------------~~~~~~~Al~~L~~lv----e~idna~~~~~~Gg~~~Lv 147 (361)
..++.|+-+...+-+.++.+.+. +.+++..++.-|+.-= -...++.=|-.+.|++++-
T Consensus 29 ~~l~~Dpw~ar~~Yi~Vil~~s~~~~~~Fl~~h~~~~l~~~e~~~al~LLEmQr~~l~mfTSCgWFFdeisgiE~vq 105 (285)
T PF12055_consen 29 GELFKDPWAARDEYIEVILDRSPENVEAFLARHAKRPLSPEERVEALKLLEMQRHALLMFTSCGWFFDEISGIETVQ 105 (285)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHhhhcccchhHHH
Confidence 33346777788888888877631 2466777776665421 1224455677888888763
No 396
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=23.97 E-value=3.9e+02 Score=21.64 Aligned_cols=94 Identities=16% Similarity=0.149 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhh---ccCCHHHHHHHHHHHHHHhcCC-chHHHHHHhC-CcHHHH
Q psy14164 199 TVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCI---QSKKEKLVIKSCFLIACLCTDN-NQVKQVLLSM-GMVEQM 273 (361)
Q Consensus 199 ~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL---~s~~~~v~~kA~~ll~~L~~~~-~~~~~~l~~~-g~i~~L 273 (361)
..-.+.+..|+..+.+. ..... .+..|..-| .....++.-||+.+|.+|+.++ +.+...+.+. ..|..|
T Consensus 18 gp~~~~l~eIa~~t~~~-~~~~~-----I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l 91 (125)
T PF01417_consen 18 GPPGKLLAEIAQLTYNS-KDCQE-----IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIREL 91 (125)
T ss_dssp S--HHHHHHHHHHTTSC-HHHHH-----HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGG
T ss_pred CcCHHHHHHHHHHHhcc-ccHHH-----HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhc
Confidence 45567778888888765 33333 345677777 5668999999999999999875 4555666433 234333
Q ss_pred HHhccCCCCCC---hhHHHHHHHHHHHH
Q psy14164 274 CVLIDIEDALD---TEMNEHLLSALASL 298 (361)
Q Consensus 274 v~lL~~~~~~d---~~~~e~al~aL~~L 298 (361)
..+=..++.+. ..+|++|-..+..|
T Consensus 92 ~~f~~~d~~g~d~~~~VR~~A~~i~~lL 119 (125)
T PF01417_consen 92 QDFQYVDPKGKDQGQNVREKAKEILELL 119 (125)
T ss_dssp GG---BBTTSTBHHHHHHHHHHHHHHHH
T ss_pred ceeeccCCCCccHHHHHHHHHHHHHHHh
Confidence 22211011112 23777776655443
No 397
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=23.67 E-value=3.2e+02 Score=32.29 Aligned_cols=70 Identities=14% Similarity=0.165 Sum_probs=51.3
Q ss_pred HhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhh
Q psy14164 233 RCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLC 309 (361)
Q Consensus 233 ~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~ 309 (361)
.+|.+++..++.-++.+...+...... ..+..+|..|+..+.++ ...-...||.+|..|+..++..+..+
T Consensus 442 ~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg---~~~ev~~aL~vL~~L~~~~~~~l~~f 511 (1426)
T PF14631_consen 442 SLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSG---NSQEVDAALDVLCELAEKNPSELQPF 511 (1426)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-HHHHHHT
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 456788999999999988888876533 23345788898888776 55555789999999999888877654
No 398
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=22.81 E-value=2.3e+02 Score=19.28 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=26.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHH
Q psy14164 145 VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFII 180 (361)
Q Consensus 145 ~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~ 180 (361)
.++++|.+.+.. |..-+.+|+++.+=.|.-++.+.
T Consensus 10 Vll~fl~~~e~~-r~~ll~vi~tlL~fs~~e~~~~~ 44 (46)
T smart00755 10 VLLQFLTLRESE-RETLLKVISTVLQLSPEEMQKLL 44 (46)
T ss_pred HHHHHhccCcch-HHHHHHHHHHHhCCCHHHHHHHH
Confidence 467788887776 88888889998887777665543
No 399
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=22.76 E-value=1.7e+02 Score=21.06 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=25.6
Q ss_pred CCHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcC
Q psy14164 141 GGLPVLQPLLEG--SDPELRWRAAETVADIVQNN 172 (361)
Q Consensus 141 Gg~~~Lv~LL~s--~~~~vr~~Aa~~Lg~iaqnn 172 (361)
|.+..|+.++.+ .+..+|..|+-.|-|.+..+
T Consensus 14 ~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~ 47 (77)
T PF03810_consen 14 GFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKN 47 (77)
T ss_dssp CHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc
Confidence 557778888833 47999999999999988765
No 400
>PF10273 WGG: Pre-rRNA-processing protein TSR2; InterPro: IPR019398 The pre-rRNA-processing protein TSR2 is required for 20S pre-rRNA processing []. This family contains a distinctive WGG motif.
Probab=22.58 E-value=2.1e+02 Score=21.90 Aligned_cols=43 Identities=19% Similarity=0.316 Sum_probs=28.4
Q ss_pred HHHHhhcCCCCCCCCCCcccccCCCCHHhHHHHHHHHHhhc----CCHHHHHHHHHHHH
Q psy14164 53 LRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMM----VNVGAELEKIIKTL 107 (361)
Q Consensus 53 L~w~~~~s~~~~~~~~~~~~~~~~~s~e~~~~L~eal~~~~----~~~~~~mk~~l~~L 107 (361)
|+.|++|.-+. +-|.++++||.+.+.+++ ..+++.+.+.|...
T Consensus 16 L~lAVen~wGG------------~~s~~K~~~l~~~i~~~f~~~~~~~~~~le~~L~~~ 62 (82)
T PF10273_consen 16 LQLAVENGWGG------------PDSQEKADWLAEVIVDWFTENKDPDADDLEDFLEDI 62 (82)
T ss_pred HHHHHHhccCC------------ccHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 68899997554 345678999999887776 12255555555443
No 401
>smart00087 PTH Parathyroid hormone.
Probab=22.37 E-value=65 Score=20.81 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=12.0
Q ss_pred CHHhHHHHHHHHHhh
Q psy14164 78 NEANRGFLLDALNSM 92 (361)
Q Consensus 78 s~e~~~~L~eal~~~ 92 (361)
+-+||.||++.|..+
T Consensus 19 ~~~R~~WLq~~L~~V 33 (36)
T smart00087 19 SLERREWLRKKLQDV 33 (36)
T ss_pred HHHHHHHHHHHHHhh
Confidence 457999999988754
No 402
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=21.68 E-value=1.4e+02 Score=22.48 Aligned_cols=29 Identities=28% Similarity=0.258 Sum_probs=26.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQN 171 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqn 171 (361)
++-|+.|.+|..+.-|..|..+||+|..+
T Consensus 41 i~El~~L~RSsv~~QR~~al~~L~~Il~~ 69 (73)
T PF08620_consen 41 IQELFHLSRSSVPSQRCIALQTLGRILYR 69 (73)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999999999754
No 403
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=21.65 E-value=1.2e+02 Score=25.86 Aligned_cols=79 Identities=18% Similarity=0.245 Sum_probs=46.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCC-hhhHHH
Q psy14164 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVREN-EECLKE 221 (361)
Q Consensus 143 ~~~Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~-~~~~~~ 221 (361)
...+..||.+++++|+..|+.||.+- ++|.... + =..|-.|++. ...|-.- ....... ...++.
T Consensus 19 ~~~~~~LL~~~d~~vQklAL~cll~~--k~~~l~p----Y--~d~L~~Lldd---~~frdeL----~~f~~~~~~~~I~~ 83 (141)
T PF07539_consen 19 YDALLRLLSSRDPEVQKLALDCLLTW--KDPYLTP----Y--KDNLENLLDD---KTFRDEL----TTFNLSDESSVIEE 83 (141)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh--CcHHHHh----H--HHHHHHHcCc---chHHHHH----HhhcccCCcCCCCH
Confidence 45667899999999999999999873 4443222 1 2456666663 2344322 2222211 112333
Q ss_pred HHhhCcHHHHHHhhc
Q psy14164 222 FIKRDGFSVLLRCIQ 236 (361)
Q Consensus 222 f~~~ggi~~Lv~lL~ 236 (361)
--....+|.++++|.
T Consensus 84 ehR~~l~pvvlRILy 98 (141)
T PF07539_consen 84 EHRPELMPVVLRILY 98 (141)
T ss_pred HHHhHHHHHHHHHHH
Confidence 334567888888875
No 404
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=20.44 E-value=3.5e+02 Score=21.60 Aligned_cols=61 Identities=11% Similarity=0.182 Sum_probs=40.8
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhcCHHHHHHHHhcChHHHHHHhhccCCCHHHHHHHHHHHHHHhcCChh
Q psy14164 146 LQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEE 217 (361)
Q Consensus 146 Lv~LL~s~~~~vr~~Aa~~Lg~iaqnn~~~q~~v~~~g~l~~Ll~LL~~~~~~~v~~~Al~ALS~l~r~~~~ 217 (361)
.++=|+.+...|+....|++.+.-.. . .++..+.+.+... +..-+...+|.+..++++...
T Consensus 5 ~L~~L~~s~~~I~~lt~~~~~~~~~a-----~-----~Iv~~i~~~~~~~-~~~~kL~~LYlindIl~n~~~ 65 (121)
T smart00582 5 KLESLNNSQESIQTLTKWAIEHASHA-----K-----EIVELWEKYIKKA-PPPRKLPLLYLLDSIVQNSKR 65 (121)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHH-----H-----HHHHHHHHHHHhC-CccceehhHHhHHHHHHHHhh
Confidence 34445567788999999999876422 1 2445555555543 335778899999999986533
No 405
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=20.21 E-value=4.4e+02 Score=20.80 Aligned_cols=86 Identities=13% Similarity=0.113 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhhCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHh
Q psy14164 197 NTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVL 276 (361)
Q Consensus 197 ~~~v~~~Al~ALS~l~r~~~~~~~~f~~~ggi~~Lv~lL~s~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~l 276 (361)
.+.+..-..||+.+.- .... .+..+.+.+....+.-+.-+..++-+++.+...-........+.+.+...
T Consensus 18 ~~~I~~lt~~a~~~~~-----~a~~-----iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~ 87 (114)
T cd03562 18 QPSIQTLTKLAIENRK-----HAKE-----IVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDA 87 (114)
T ss_pred HHHHHHHHHHHHHHHH-----HHHH-----HHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 3467777777777652 1122 23345555666666777788888888887633323333333446666666
Q ss_pred ccCCCCCChhHHHHHHHHH
Q psy14164 277 IDIEDALDTEMNEHLLSAL 295 (361)
Q Consensus 277 L~~~~~~d~~~~e~al~aL 295 (361)
.... +++++++....+
T Consensus 88 ~~~~---~~~~r~kl~rl~ 103 (114)
T cd03562 88 YEKV---DEKTRKKLERLL 103 (114)
T ss_pred HHhC---CHHHHHHHHHHH
Confidence 6666 788887766654
No 406
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=20.14 E-value=3.7e+02 Score=19.93 Aligned_cols=51 Identities=12% Similarity=0.048 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHhhcCcccHHHHHHCCCHHHHHHhh-cCCCHHHHHHHHHHHH
Q psy14164 112 DQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLL-EGSDPELRWRAAETVA 166 (361)
Q Consensus 112 ~~~~~~~~Al~~L~~lve~idna~~~~~~Gg~~~Lv~LL-~s~~~~vr~~Aa~~Lg 166 (361)
.+.+..+.+|..|..+--+ ...+.. -.+...|.-| +|+++.|+..|..++.
T Consensus 18 ~~~~~~~~~L~~L~~~~it---~~~L~~-T~iG~~V~~Lrkh~~~~i~~~A~~Lv~ 69 (76)
T cd00183 18 EEVSRLLDLLRLLKKLPLT---VEILKE-TRIGKKVNSLRKHSNEKIRKLAKALIK 69 (76)
T ss_pred CCHHHHHHHHHHHhcCCCC---HHHHHH-CCHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3556677777777665321 233444 4566666655 6788999998887765
No 407
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=20.01 E-value=3.5e+02 Score=21.01 Aligned_cols=71 Identities=15% Similarity=0.081 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCchHHHHHHhCCcHHHHHHhccCCCCCChhHHHHHHHHHHHHHhcChHHHHhhccCc
Q psy14164 238 KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEP 313 (361)
Q Consensus 238 ~~~~v~~kA~~ll~~L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~d~~~~e~al~aL~~L~~~~~~~~~~~~~~~ 313 (361)
++..+|..|+.++..++....+....+ +..++..+.+.|.++ +..+ ..-..||..|..-++++++.+--|+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L-~~Ri~~tl~k~l~d~---~~~~-~t~YGAi~gL~~lG~~~vr~~ilP~ 88 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTL-QPRITRTLLKALLDP---KKPL-GTHYGAIVGLSALGPEAVRALILPN 88 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchH-HHHHHHHHHHHHcCC---CCCH-HHHHHHHHHHHHHHHHHHHHhhccC
Confidence 467999999999999997622111111 123566777777765 3333 2335556666666777777654443
Done!