RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14164
(361 letters)
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats. An approximately
40 amino acid long tandemly repeated sequence motif
first identified in the Drosophila segment polarity gene
armadillo; these repeats were also found in the
mammalian armadillo homolog beta-catenin, the junctional
plaque protein plakoglobin, the adenomatous polyposis
coli (APC) tumor suppressor protein, and a number of
other proteins. ARM has been implicated in mediating
protein-protein interactions, but no common features
among the target proteins recognized by the ARM repeats
have been identified; related to the HEAT domain; three
consecutive copies of the repeat are represented by this
alignment model.
Length = 120
Score = 35.4 bits (82), Expect = 0.010
Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 136 DFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD 195
++ GGLP L LL SD ++ AA ++++ N + +++ L L+ +
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLL-KS 60
Query: 196 SNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT 255
+ V +L+A+ L E+ ++ G L+ + S E + + ++ L +
Sbjct: 61 EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
Score = 34.2 bits (79), Expect = 0.025
Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 100 LEKIIKTLKENQDQ-KDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELR 158
L ++ L + + + AL NLS + D ++ GGLP L LL+ D E+
Sbjct: 9 LPALVSLLSSSDENVQREAAWALSNLSA--GNNDNIQAVVEAGGLPALVQLLKSEDEEVV 66
Query: 159 WRAAETVADIVQNNPFSQNFIIQTDFLNLLL 189
A + ++ ++ +++ + L+
Sbjct: 67 KAALWALRNLAAGPEDNKLIVLEAGGVPKLV 97
Score = 30.7 bits (70), Expect = 0.38
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 92 MMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLL 150
+V G L +++ LK E+++ + AL NL+ D L+ GG+P L LL
Sbjct: 44 AVVEAGG-LPALVQLLKSEDEEVVKAALWALRNLAA--GPEDNKLIVLEAGGVPKLVNLL 100
Query: 151 EGSDPELRWRAAETVADIVQ 170
+ S+ +++ A ++++
Sbjct: 101 DSSNEDIQKNATGALSNLAS 120
>gnl|CDD|184462 PRK14025, PRK14025, multifunctional 3-isopropylmalate
dehydrogenase/D-malate dehydrogenase; Provisional.
Length = 330
Score = 31.6 bits (72), Expect = 0.58
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 11/61 (18%)
Query: 202 VKSLYAVSCL--------VRENEECLK---EFIKRDGFSVLLRCIQSKKEKLVIKSCFLI 250
VKS V CL VREN E L E DG +V R I K + + + F +
Sbjct: 93 VKSYKGVKCLYPDIDYVIVRENTEGLYKGIEAEIADGVTVATRVITRKASERIFRFAFEM 152
Query: 251 A 251
A
Sbjct: 153 A 153
>gnl|CDD|227556 COG5231, VMA13, Vacuolar H+-ATPase V1 sector, subunit H [Energy
production and conversion].
Length = 432
Score = 31.9 bits (72), Expect = 0.61
Identities = 15/90 (16%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 81 NRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFL-K 139
+ F L+ ++ + ++ + K L+ N IC+ A ++ + + N L K
Sbjct: 339 KKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICV-ACSDIFQLVRASPEINAVLSK 397
Query: 140 MGGLPVLQPLLEGSDPELRWRAAETVADIV 169
G ++ L+ D ++++ A + + +
Sbjct: 398 YGVKEIIMNLINHDDDDVKFEALQALQTCI 427
>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein. The Polycystin
Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a
huge protein of 4303aas. Its repeated leucine-rich (LRR)
segment is found in many proteins. It contains 16
polycystic kidney disease (PKD) domains, one
LDL-receptor class A domain, one C-type lectin family
domain, and 16-18 putative TMSs in positions between
residues 2200 and 4100. Polycystin-L has been shown to
be a cation (Na+, K+ and Ca2+) channel that is activated
by Ca2+. Two members of the PCC family (polycystin 1 and
2) are mutated in autosomal dominant polycystic kidney
disease, and polycystin-L is deleted in mice with renal
and retinal defects. Note: this model is restricted to
the amino half for technical reasons.
Length = 2740
Score = 31.2 bits (70), Expect = 1.1
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 149 LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQT-DFLNLLLTSIEHDSNTTV 200
+ GSD +W + QN F N I Q L LT++ H SN T
Sbjct: 918 VEAGSDMTFKWTIDDKPFFTFQNTVF--NVIYQHAAVFKLSLTAMNHVSNLTE 968
>gnl|CDD|235391 PRK05290, PRK05290, hybrid cluster protein; Provisional.
Length = 546
Score = 30.9 bits (71), Expect = 1.2
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 47 SNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNVGAELEKIIKT 106
++LQDLL YA++ S A +A + +E +R F+ +AL + + NV + E+I+
Sbjct: 28 ADLQDLLIYALKGLSA-YALKARELG--IIDHEVDR-FVPEALFTTLTNVNFDDERIVGY 83
Query: 107 LKENQDQKD 115
+KE ++
Sbjct: 84 IKEAIALRE 92
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats. This family includes multiple
HEAT repeats.
Length = 88
Score = 28.5 bits (64), Expect = 1.6
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Query: 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQV 202
LP L LL+ DPE+R AAE + + +P + L LL ++ D + V+
Sbjct: 33 LPALLELLKDPDPEVRRAAAEALGKL--GDP---------EALPALLELLQDDDDAVVRA 81
Query: 203 KSLYA 207
+ A
Sbjct: 82 AAASA 86
>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular
trafficking and secretion].
Length = 526
Score = 30.2 bits (68), Expect = 1.9
Identities = 27/144 (18%), Positives = 67/144 (46%), Gaps = 1/144 (0%)
Query: 141 GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTV 200
G +P+ LL ++ ++R +A + +I ++ +++++Q L LL + +
Sbjct: 157 GAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHIS 216
Query: 201 QVKSL-YAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQ 259
+++ + +S L R +L + I S+ ++++ +C+ I+ L N+
Sbjct: 217 MLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNE 276
Query: 260 VKQVLLSMGMVEQMCVLIDIEDAL 283
Q +L +G+ ++ L+ E A
Sbjct: 277 KIQAVLDVGIPGRLVELLSHESAK 300
Score = 29.1 bits (65), Expect = 4.4
Identities = 34/177 (19%), Positives = 74/177 (41%), Gaps = 12/177 (6%)
Query: 122 DNLSDYICSIDYAND--------FLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNP 173
+ L D +I Y +D L +G L LL +++ A +V +IV +
Sbjct: 258 EVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSD 317
Query: 174 FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLR 233
II L + + ++ ++ + +S + N E ++ I + L+
Sbjct: 318 DQTQVIINCGALKAFRSLLSSPKE-NIRKEACWTISNITAGNTEQIQAVIDANLIPPLIH 376
Query: 234 CIQSKKEKLVIKSCFLIACLCTDNNQ---VKQVLLSMGMVEQMCVLIDIEDALDTEM 287
+ S + K+ ++C+ I+ + + + L+S G ++ +C L+D+ D E+
Sbjct: 377 LLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEV 433
>gnl|CDD|235119 PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 217
Score = 29.6 bits (67), Expect = 2.3
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 242 LVIKSCFLIACLCTDNNQVKQVLLSMGMVE 271
L I+ I CLC + KQ+ L M MVE
Sbjct: 57 LTIRHGSGIVCLCLTEERRKQLDLPM-MVE 85
>gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN;
Provisional.
Length = 319
Score = 29.6 bits (66), Expect = 2.4
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 11 VTRKQPIRLEDSQAQPNLAIEYAPNQDIPA-RQPRQPSNL------QDLLRYAVEAGSRS 63
+ +Q + + + + + +Q P QPRQ QDLL+ ++S
Sbjct: 162 LAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQDLLQTPAHTTAQS 221
Query: 64 RAQEAPNINRAA 75
+ Q+A + RAA
Sbjct: 222 KPQQAAPVTRAA 233
>gnl|CDD|220385 pfam09759, Atx10homo_assoc, Spinocerebellar ataxia type 10 protein
domain. This is the conserved C-terminal 100 residues
of Ataxin-10. Ataxin-10 belongs to the family of
armadillo repeat proteins and in solution it tends to
form homotrimeric complexes, which associate via a
tip-to-tip association in a horseshoe-shaped contact
with the concave sides of the molecules facing each
other. This domain may represent the homo-association
site since that is located near the C-terminus of
Ataxin-10. The protein does not contain a signal
sequence for secretion or any subcellular compartment
confirming its cytoplasmic localisation, specifically to
the olivocerebellar region.
Length = 102
Score = 28.0 bits (63), Expect = 2.8
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 249 LIACLCTDNNQVKQVLLSMGMVEQM--CVLIDIEDALDTEMNEHLLSALASLIKDSPEAQ 306
LIA L N +V+ + +G + + ID + + E + + +L++++PE Q
Sbjct: 9 LIANLTYKNKEVQDKVRELGGLALILSNTRIDDNNPF---IKEWAIFCIRNLLENNPENQ 65
Query: 307 SLCR-LEP 313
LEP
Sbjct: 66 EFIAGLEP 73
>gnl|CDD|130672 TIGR01611, tail_tube, phage contractile tail tube protein, P2
family. The tails of some phage are contractile. This
model represents the tail tube, or tail core, protein of
the contractile tail of phage P2, and homologous
proteins from additional phage [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 168
Score = 27.5 bits (61), Expect = 7.6
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 313 PLNLKFKLNFIKEKHAGNEVYHKELEYVNSV 343
F L + K+ G E+ EL+YVN++
Sbjct: 122 EFKSAFALTYYKQVVDGEELL--ELDYVNNI 150
>gnl|CDD|222772 PHA00019, IV, phage assembly protein.
Length = 428
Score = 27.9 bits (62), Expect = 9.1
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 16/93 (17%)
Query: 121 LDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELR-------------WRAAETVAD 167
L L+D+I +ID + + L L +G D A T
Sbjct: 182 LPALADFISAIDVPRRQVLIEALIFETSLGDGVDLSFAAGLASGGKVAGGFNTARLTTVL 241
Query: 168 IVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTV 200
F I + L L + ++E+ SN+ V
Sbjct: 242 SSAGGSF---GIFNGNVLGLSVKALENSSNSRV 271
>gnl|CDD|237346 PRK13317, PRK13317, pantothenate kinase; Provisional.
Length = 277
Score = 27.6 bits (62), Expect = 9.6
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 97 GAELEKIIKTLKENQDQKDICI-----GALDNLSDYICSIDYANDFL 138
AE +K+I L QD + IC+ G L L +Y I +F
Sbjct: 32 SAEGKKVIDWLINLQDIEKICLTGGKAGYLQQLLNYGYPIAEFVEFE 78
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.377
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,765,504
Number of extensions: 1697722
Number of successful extensions: 1700
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1699
Number of HSP's successfully gapped: 37
Length of query: 361
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 263
Effective length of database: 6,590,910
Effective search space: 1733409330
Effective search space used: 1733409330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)