RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14164
(361 letters)
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 166 bits (422), Expect = 3e-49
Identities = 91/269 (33%), Positives = 140/269 (52%), Gaps = 7/269 (2%)
Query: 94 VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGL-PVLQPLLEG 152
+ V ++ E + GAL+ L+D ++D A DF ++ G+ ++ LE
Sbjct: 34 LRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEA 93
Query: 153 SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV 212
LRWRAA+ + QN Q ++ L LL ++ D+ TV+VK+L+A+SCLV
Sbjct: 94 GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV 153
Query: 213 RENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ 272
RE E L +F++ DGFSVL+R +Q + +KL +KS FL+ L + + K L SMGMV+Q
Sbjct: 154 REQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213
Query: 273 MCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEV 332
+ L+ E + +EH+L AL SL+ D P+ CR L L+ L + +E
Sbjct: 214 LVALVRTEHS---PFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEE 270
Query: 333 YHKELEYVNSVLTEVFEEDSPEEFDHQDR 361
Y +ELE+ +L F D DR
Sbjct: 271 YQEELEFCEKLLQTCFSS---PADDSMDR 296
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 67.7 bits (166), Expect = 2e-13
Identities = 36/210 (17%), Positives = 89/210 (42%), Gaps = 7/210 (3%)
Query: 90 NSMMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQP 148
+ + G+EL ++++ L +Q + + L ++ + + G LP L
Sbjct: 4 SHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASG--GNEQIQAVIDAGALPALVQ 61
Query: 149 LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAV 208
LL + ++ A +++I +I L L+ + N + ++L+A+
Sbjct: 62 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWAL 120
Query: 209 SCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG 268
S + E ++ I L++ + S E+++ ++ + ++ + + N+ KQ + G
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG 180
Query: 269 MVEQMCVLIDIEDALDTEMNEHLLSALASL 298
+E++ L E+ ++ + AL L
Sbjct: 181 ALEKLEQLQSHENE---KIQKEAQEALEKL 207
Score = 28.0 bits (63), Expect = 4.3
Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 110 NQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIV 169
N+ + AL N++ + + G L L+ L + +++ A E + +
Sbjct: 151 NEQILQEALWALSNIASG--GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208
Query: 170 QN 171
+
Sbjct: 209 SH 210
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 69.3 bits (169), Expect = 6e-13
Identities = 31/229 (13%), Positives = 84/229 (36%), Gaps = 9/229 (3%)
Query: 87 DALNSMMVNVGAELEKIIKTLKENQD--QKDICIGALDNLSDYICSIDYANDFLKMGGLP 144
+A ++ + I++T++ D G L NLS + K GG+P
Sbjct: 181 EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH---HREGLLAIFKSGGIP 237
Query: 145 VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKS 204
L +L + + A T+ +++ + ++ + L ++ + +N +
Sbjct: 238 ALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAIT 296
Query: 205 LYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVL 264
+ L N+E + G L+ +++ + ++ + + + + + K +
Sbjct: 297 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI 356
Query: 265 LSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEP 313
+ G ++ L + ++ L L +L + + + + L
Sbjct: 357 VEAGGMQ---ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLG 402
Score = 62.0 bits (150), Expect = 1e-10
Identities = 29/205 (14%), Positives = 60/205 (29%), Gaps = 12/205 (5%)
Query: 109 ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI 168
+Q C+ L NLSD G L L LL D + AA ++++
Sbjct: 372 PSQRLVQNCLWTLRNLSD-----AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 426
Query: 169 VQNNPFSQNFIIQTDFLNLLLTSIEHDSNT-TVQVKSLYAVSCLVR---ENEECLKEFIK 224
NN ++ + Q + L+ ++ + + ++ A+ L + E
Sbjct: 427 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRL 486
Query: 225 RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALD 284
G V+++ + +IK+ + L G + L+ +
Sbjct: 487 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP---RLVQLLVRAH 543
Query: 285 TEMNEHLLSALASLIKDSPEAQSLC 309
+
Sbjct: 544 QDTQRRTSMGGTQQQFVEGVRMEEI 568
Score = 61.2 bits (148), Expect = 2e-10
Identities = 22/173 (12%), Positives = 61/173 (35%), Gaps = 4/173 (2%)
Query: 138 LKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSN 197
L +P L LL D + +AA V + + + ++ ++ ++++ ++
Sbjct: 147 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 206
Query: 198 TTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN 257
+ + L + E L K G L+ + S + ++ + + L
Sbjct: 207 VETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ 265
Query: 258 NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCR 310
K + G ++ ++ + + + + L L + E++ +
Sbjct: 266 EGAKMAVRLAGGLQ---KMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 315
Score = 49.3 bits (117), Expect = 1e-06
Identities = 31/227 (13%), Positives = 68/227 (29%), Gaps = 32/227 (14%)
Query: 100 LEKIIKTLK--ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPEL 157
L ++K L + +G + NL+ + G +P L LL + +
Sbjct: 490 LPVVVKLLHPPSHWPLIKATVGLIRNLA---LCPANHAPLREQGAIPRLVQLLVRAHQDT 546
Query: 158 RWRAAETVADIVQNNPFSQNFIIQ--TDFLNLLLTSIE------------------HDSN 197
+ R + I++ T L++L I +
Sbjct: 547 QRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPI 606
Query: 198 TTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN 257
+Q + + L + ++E + + L + S+ E + + ++ + D
Sbjct: 607 ENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 665
Query: 258 NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPE 304
Q + LS+ + + NE L + P
Sbjct: 666 PQDYKKRLSVELTSSLF------RTEPMTWNETGDLGLDIGAQGEPL 706
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 68.4 bits (167), Expect = 7e-13
Identities = 32/215 (14%), Positives = 87/215 (40%), Gaps = 8/215 (3%)
Query: 92 MMVNVGAELEKIIKTLK--ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPL 149
++ G + + ++ LK EN + L N++ + ++ G +P+ L
Sbjct: 59 VISTPGV-VARFVEFLKRKENCTLQFESAWVLTNIAS--GNSLQTRIVIQAGAVPIFIEL 115
Query: 150 LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVS 209
L +++ +A + +I ++ +++++ + L LL + T+ +++A+S
Sbjct: 116 LSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALS 175
Query: 210 CLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGM 269
L R + +VL + ++ +C+ ++ L N Q ++ G+
Sbjct: 176 NLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGV 235
Query: 270 VEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPE 304
L+++ D ++ L A+ +++
Sbjct: 236 CR---RLVELLMHNDYKVVSPALRAVGNIVTGDDI 267
Score = 68.0 bits (166), Expect = 9e-13
Identities = 35/191 (18%), Positives = 82/191 (42%), Gaps = 8/191 (4%)
Query: 113 QKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN 172
D C AL LSD D + G L LL +D ++ A V +IV +
Sbjct: 209 LADAC-WALSYLSDG--PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGD 265
Query: 173 PFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLL 232
I+ L LL + +++ ++ + +S + N ++ I + F L+
Sbjct: 266 DIQTQVILNCSALQSLLHLLSS-PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALI 324
Query: 233 RCIQSKKEKLVIKSCFLIACLCT-DNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHL 291
+Q+ + + ++ + I + + + + L+ +G ++ +C L+ + D+++ +
Sbjct: 325 SILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM---DSKIVQVA 381
Query: 292 LSALASLIKDS 302
L+ L ++++
Sbjct: 382 LNGLENILRLG 392
Score = 60.7 bits (147), Expect = 2e-10
Identities = 22/176 (12%), Positives = 66/176 (37%), Gaps = 4/176 (2%)
Query: 141 GGLPVLQPLLEGSDPELRWRAAETVADIVQN--NPFSQNFIIQTDFLNLLLTSIEHDSNT 198
+ ++ PE + A + ++ NP I + + ++ N
Sbjct: 20 VITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENC 79
Query: 199 TVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN 258
T+Q +S + ++ + N + I+ + + + S+ E + ++ + + + D+
Sbjct: 80 TLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDST 139
Query: 259 QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPL 314
+ +L ++ + L ++ M + + AL++L + ++ P
Sbjct: 140 MCRDYVLDCNILPPLLQLFSKQN--RLTMTRNAVWALSNLCRGKSPPPEFAKVSPC 193
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 67.7 bits (165), Expect = 1e-12
Identities = 41/256 (16%), Positives = 104/256 (40%), Gaps = 20/256 (7%)
Query: 90 NSMMVNVGAELEKIIKTLKENQD---QKDICIGALDNLSDYICSIDYANDFLKMGGLPVL 146
+ ++ ++ + L + D D C A+ L+D + +K G +P L
Sbjct: 223 PAPPLDAVEQILPTLVRLLHHNDPEVLADSC-WAISYLTDG--PNERIEMVVKKGVVPQL 279
Query: 147 QPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLY 206
LL ++ + A + +IV +I L + + + + T +Q ++ +
Sbjct: 280 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATW 338
Query: 207 AVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLL 265
+S + ++ +++ + L+ + K ++ + I + + L+
Sbjct: 339 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLV 398
Query: 266 SMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFK----LN 321
G++E + L+ + DT++ + +L A++++ + A+ L E L++ + L+
Sbjct: 399 HCGIIEPLMNLLSAK---DTKIIQVILDAISNIFQA---AEKLGETEKLSIMIEECGGLD 452
Query: 322 FIKE--KHAGNEVYHK 335
I+ +H VY
Sbjct: 453 KIEALQRHENESVYKA 468
Score = 59.3 bits (143), Expect = 7e-10
Identities = 44/297 (14%), Positives = 105/297 (35%), Gaps = 21/297 (7%)
Query: 18 RLEDSQAQPNLAI--EYAPNQDIPARQPRQPSNLQDLLRYAVEAGSRSRAQEAPNINRAA 75
P+L + DI + Q +++D+++ S+ Q +
Sbjct: 26 FERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLL 85
Query: 76 SMNEANRGFLLDALNSMMVNVGAELEKIIKTLK--ENQDQKDICIGALDNLSDYICSIDY 133
S E ++ G + K + L + + AL N++ + +
Sbjct: 86 S-REKQP------PIDNIIRAGL-IPKFVSFLGKTDCSPIQFESAWALTNIASG--TSEQ 135
Query: 134 ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE 193
+ G +P LL + +A + +I + ++ +I+ ++ LL +
Sbjct: 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
Query: 194 HDSNTTVQVKSL----YAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFL 249
+T+ L + +S L R L+R + +++ SC+
Sbjct: 196 VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWA 255
Query: 250 IACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQ 306
I+ L N+ ++++ G+V Q+ L+ + + L A+ +++ + E
Sbjct: 256 ISYLTDGPNERIEMVVKKGVVPQLVKLLGAT---ELPIVTPALRAIGNIVTGTDEQT 309
Score = 48.9 bits (116), Expect = 1e-06
Identities = 30/219 (13%), Positives = 77/219 (35%), Gaps = 9/219 (4%)
Query: 92 MMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLL 150
M+V G + +++K L + A+ N+ + + + G L V LL
Sbjct: 269 MVVKKGV-VPQLVKLLGATELPIVTPALRAIGNIVT--GTDEQTQKVIDAGALAVFPSLL 325
Query: 151 EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSC 210
++ A T+++I ++ + L+ + ++ Q ++ +A++
Sbjct: 326 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV-GVLSKADFKTQKEAAWAITN 384
Query: 211 LVRE-NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGM 269
E + + L+ + +K K++ I+ + ++ + M
Sbjct: 385 YTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIM 444
Query: 270 VEQMCVLIDIEDAL---DTEMNEHLLSALASLIKDSPEA 305
+E+ L IE + + + L+ + E
Sbjct: 445 IEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEE 483
Score = 39.2 bits (91), Expect = 0.001
Identities = 21/161 (13%), Positives = 55/161 (34%), Gaps = 10/161 (6%)
Query: 160 RAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAV-SCLVRENEEC 218
T D N + ++ I + N Q+++ A L RE +
Sbjct: 34 PDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSN-NLESQLQATQAARKLLSREKQPP 92
Query: 219 LKEFIKRDGFSVLLRCIQ-SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLI 277
+ I+ + + + + +S + + + + ++ + ++ G + L+
Sbjct: 93 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 152
Query: 278 DIEDALDTEMNEHLLSALASLIKDSPEAQSLCR----LEPL 314
++E + AL ++ D + L ++PL
Sbjct: 153 ASPH---AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPL 190
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 66.7 bits (163), Expect = 3e-12
Identities = 27/199 (13%), Positives = 71/199 (35%), Gaps = 13/199 (6%)
Query: 120 ALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI 179
A+ NL +Y + L +P L LL D + +AA V + + +
Sbjct: 1 AVVNLINYQ-----DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM 55
Query: 180 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKK 239
++ ++ ++++ ++ + + L + E L K G L++ + S
Sbjct: 56 RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPV 114
Query: 240 EKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 299
+ ++ + + L K + G ++ ++ + + + + L L
Sbjct: 115 DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQ---KMVALLNKTNVKFLAITTDCLQILA 171
Query: 300 KDSPEAQSLCR----LEPL 314
+ E++ + + L
Sbjct: 172 YGNQESKLIILASGGPQAL 190
Score = 62.9 bits (153), Expect = 5e-11
Identities = 35/241 (14%), Positives = 75/241 (31%), Gaps = 22/241 (9%)
Query: 75 ASMNEANRGFLLDALNSMMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYICSIDY 133
S+ +N+ +++A G ++ + L +Q C+ L NLSD
Sbjct: 213 LSVCSSNKPAIVEA--------GG-MQALGLHLTDPSQRLVQNCLWTLRNLSD-----AA 258
Query: 134 ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE 193
G L L LL D + AA ++++ NN ++ + Q + L+ ++
Sbjct: 259 TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 318
Query: 194 HDSNT-TVQVKSLYAVSCLV---RENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFL 249
+ + ++ A+ L +E E G V+++ + +IK+
Sbjct: 319 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 378
Query: 250 IACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLC 309
+ L G + L+ + +
Sbjct: 379 LIRNLALCPANHAPLREQGAIP---RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI 435
Query: 310 R 310
Sbjct: 436 V 436
Score = 59.4 bits (144), Expect = 7e-10
Identities = 27/215 (12%), Positives = 70/215 (32%), Gaps = 11/215 (5%)
Query: 93 MVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLE 151
+ G + ++K L I L NL + GGL + LL
Sbjct: 97 IFKSGG-IPALVKMLGSPVDSVLFYAITTLHNLL--LHQEGAKMAVRLAGGLQKMVALLN 153
Query: 152 GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCL 211
++ + + + + N S+ I+ + L+ + + + + + L
Sbjct: 154 KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 213
Query: 212 VRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE 271
++ G L + ++LV + + L + + + G++
Sbjct: 214 SV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME---GLLG 269
Query: 272 QMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQ 306
L+ + + D + L++L ++ + +
Sbjct: 270 ---TLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301
Score = 33.6 bits (77), Expect = 0.088
Identities = 15/114 (13%), Positives = 37/114 (32%), Gaps = 5/114 (4%)
Query: 98 AELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPEL 157
++ ++ + C GAL L+ + + +P+ LL +
Sbjct: 420 GGTQQQFVEGVRMEEIVEGCTGALHILA---RDVHNRIVIRGLNTIPLFVQLLYSPIENI 476
Query: 158 RWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCL 211
+ AA + ++ Q+ ++ I L + N V + + +
Sbjct: 477 QRVAAGVLCELAQDKEAAE-AIEAEGATAPLTELLHSR-NEGVATYAAAVLFRM 528
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 65.8 bits (160), Expect = 5e-12
Identities = 40/238 (16%), Positives = 84/238 (35%), Gaps = 16/238 (6%)
Query: 75 ASMNEANRGFLLDALNSMMVNVGAELEKIIKTLKE-NQDQKDICIGALDNLSDYICSIDY 133
A + R ++L A +E I+ L NL
Sbjct: 201 AGDSTDYRDYVLQC--------NA-MEPILGLFNSNKPSLIRTATWTLSNLCRG--KKPQ 249
Query: 134 ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE 193
+ + LP L L+ D E A ++ + + +I L+ +
Sbjct: 250 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 309
Query: 194 HDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL 253
H+S T VQ +L AV +V N+ + I L + S KE + ++C+ I+ +
Sbjct: 310 HES-TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 368
Query: 254 CTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRL 311
N + Q ++ ++ + L+++ + + + A+++ + + R
Sbjct: 369 TAGNTEQIQAVIDANLIPPLVKLLEVA---EYKTKKEACWAISNASSGGLQRPDIIRY 423
Score = 60.4 bits (146), Expect = 3e-10
Identities = 30/221 (13%), Positives = 78/221 (35%), Gaps = 7/221 (3%)
Query: 86 LDALNSMMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLP 144
+ A + EL ++ + L ++ ++ + + ++ G +P
Sbjct: 75 VSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILS-REHRPPIDVVIQAGVVP 133
Query: 145 VLQPLL-EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVK 203
L + E L+ AA + +I ++ D + L + + + V+ +
Sbjct: 134 RLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-GSVEVKEQ 192
Query: 204 SLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQV 263
+++A+ + ++ + ++ + +L S K L+ + + ++ LC
Sbjct: 193 AIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW 252
Query: 264 LLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPE 304
+ + + LI DTE A++ L E
Sbjct: 253 SVVSQALPTLAKLIYSM---DTETLVDACWAISYLSDGPQE 290
Score = 48.5 bits (115), Expect = 2e-06
Identities = 23/197 (11%), Positives = 74/197 (37%), Gaps = 10/197 (5%)
Query: 92 MMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLL 150
+++V +++++ L E+ + + A+ N+ + + G LP L+ LL
Sbjct: 294 AVIDVRI-PKRLVELLSHESTLVQTPALRAVGNIV--TGNDLQTQVVINAGVLPALRLLL 350
Query: 151 EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSC 210
++ A T+++I N +I + + L+ +E + ++ +A+S
Sbjct: 351 SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEY-KTKKEACWAISN 409
Query: 211 LVR---ENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSM 267
+ + ++ + + L ++ +++ + + + K+
Sbjct: 410 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKE--ARG 467
Query: 268 GMVEQMCVLIDIEDALD 284
+ + I+ ++
Sbjct: 468 LNINENADFIEKAGGME 484
Score = 41.9 bits (98), Expect = 2e-04
Identities = 23/159 (14%), Positives = 56/159 (35%), Gaps = 8/159 (5%)
Query: 161 AAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLK 220
A D + Q + L + + D ++ L RE+ +
Sbjct: 65 ADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPID 124
Query: 221 EFIKRDGFSVLLRCIQSKK-EKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDI 279
I+ L+ ++ + E L +++ + + + + + +V++ V L+
Sbjct: 125 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT 184
Query: 280 EDALDTEMNEHLLSALASLIKDSPEAQSLCR----LEPL 314
E+ E + AL ++ DS + + +EP+
Sbjct: 185 GS---VEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPI 220
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 63.1 bits (154), Expect = 1e-11
Identities = 32/220 (14%), Positives = 89/220 (40%), Gaps = 7/220 (3%)
Query: 90 NSMMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQP 148
+ + G+EL ++ + L ++ ++ + + + G LP L
Sbjct: 4 SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSD--GNEQIQAVIDAGALPALVQ 61
Query: 149 LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAV 208
LL + ++ A +++I +I L L+ + N + ++L+A+
Sbjct: 62 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWAL 120
Query: 209 SCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG 268
S + E ++ I L++ + S E+++ ++ + ++ + + N+ Q ++ G
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG 180
Query: 269 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSL 308
+ + L+ + ++ + L AL+++ E +
Sbjct: 181 ALPALVQLLSSP---NEQILQEALWALSNIASGGNEQKQA 217
Score = 40.7 bits (96), Expect = 3e-04
Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 13/139 (9%)
Query: 75 ASMNEANRGFLLDALNSMMVNVGAELEKIIKTLKE-NQDQKDICIGALDNLSDYICSIDY 133
AS ++DA GA L +++ L N+ + AL N++ +
Sbjct: 124 ASGGNEQIQAVIDA--------GA-LPALVQLLSSPNEQILQEALWALSNIASG--GNEQ 172
Query: 134 ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE 193
+ G LP L LL + ++ A +++I + + + L L
Sbjct: 173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 232
Query: 194 HDSNTTVQVKSLYAVSCLV 212
H N +Q ++ A+ L
Sbjct: 233 H-ENEKIQKEAQEALEKLQ 250
Score = 32.3 bits (74), Expect = 0.16
Identities = 14/81 (17%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 92 MMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLL 150
+++ GA L +++ L N+ + AL N++ + + G L L+ L
Sbjct: 175 AVIDAGA-LPALVQLLSSPNEQILQEALWALSNIAS--GGNEQKQAVKEAGALEKLEQLQ 231
Query: 151 EGSDPELRWRAAETVADIVQN 171
+ +++ A E + + +
Sbjct: 232 SHENEKIQKEAQEALEKLQSH 252
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 63.8 bits (155), Expect = 3e-11
Identities = 26/189 (13%), Positives = 69/189 (36%), Gaps = 9/189 (4%)
Query: 131 IDYAND-FLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLL 189
I+Y +D L +P L LL D + +AA V + + + ++ ++
Sbjct: 3 INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 62
Query: 190 TSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFL 249
++++ ++ + + L + E L K G L++ + S + ++ +
Sbjct: 63 RTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITT 121
Query: 250 IACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLC 309
+ L K + G ++ ++ + + + + L L + E++ +
Sbjct: 122 LHNLLLHQEGAKMAVRLAGGLQ---KMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178
Query: 310 R----LEPL 314
+ L
Sbjct: 179 LASGGPQAL 187
Score = 62.3 bits (151), Expect = 1e-10
Identities = 31/206 (15%), Positives = 60/206 (29%), Gaps = 12/206 (5%)
Query: 109 ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI 168
+Q C+ L NLSD G L L LL D + AA ++++
Sbjct: 236 PSQRLVQNCLWTLRNLSD-----AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 290
Query: 169 VQNNPFSQNFIIQTDFL-NLLLTSIEHDSNTTVQVKSLYAVSCLV---RENEECLKEFIK 224
NN ++ + Q + L+ T + + ++ A+ L +E E
Sbjct: 291 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL 350
Query: 225 RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALD 284
G V+++ + +IK+ + L G + L+ +
Sbjct: 351 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP---RLVQLLVRAH 407
Query: 285 TEMNEHLLSALASLIKDSPEAQSLCR 310
+
Sbjct: 408 QDTQRRTSMGGTQQQFVEGVRMEEIV 433
Score = 57.3 bits (138), Expect = 4e-09
Identities = 27/215 (12%), Positives = 70/215 (32%), Gaps = 11/215 (5%)
Query: 93 MVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLE 151
+ G + ++K L I L NL + GGL + LL
Sbjct: 94 IFKSGG-IPALVKMLGSPVDSVLFYAITTLHNLL--LHQEGAKMAVRLAGGLQKMVALLN 150
Query: 152 GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCL 211
++ + + + + N S+ I+ + L+ + + + + + L
Sbjct: 151 KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 210
Query: 212 VRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE 271
++ G L + ++LV + + L + + + G++
Sbjct: 211 SV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME---GLLG 266
Query: 272 QMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQ 306
L+ + + D + L++L ++ + +
Sbjct: 267 ---TLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 298
Score = 47.6 bits (113), Expect = 3e-06
Identities = 31/219 (14%), Positives = 68/219 (31%), Gaps = 29/219 (13%)
Query: 100 LEKIIKTLK--ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPEL 157
L ++K L + +G + NL+ + G +P L LL + +
Sbjct: 354 LPVVVKLLHPPSHWPLIKATVGLIRNLA---LCPANHAPLREQGAIPRLVQLLVRAHQDT 410
Query: 158 RWRAAETVADIVQNNPFSQNFIIQ--TDFLNLLLTSIE------------------HDSN 197
+ R + I++ T L++L + +
Sbjct: 411 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI 470
Query: 198 TTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN 257
+Q + + L + ++E + + L + S+ E + + ++ + D
Sbjct: 471 ENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529
Query: 258 NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALA 296
Q + LS+ + L E E + L A
Sbjct: 530 PQDYKKRLSVELTSS---LFRTEPMAWNETADLGLDIGA 565
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 61.4 bits (148), Expect = 2e-10
Identities = 36/199 (18%), Positives = 73/199 (36%), Gaps = 8/199 (4%)
Query: 109 ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI 168
E+ + +++ L+ + + ++ GG+ L + + + A + +A I
Sbjct: 507 ESHNSQELIARVLNAVCG---LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARI 563
Query: 169 V--QNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRD 226
N S + D + LL ++ D +SL A++ L NE + IK
Sbjct: 564 GITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQ 623
Query: 227 GFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTE 286
G S + + L + + L + +K + V+ + +L + ED E
Sbjct: 624 GVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDE---E 680
Query: 287 MNEHLLSALASLIKDSPEA 305
ALA + S +
Sbjct: 681 TATACAGALAIITSVSVKC 699
Score = 47.1 bits (111), Expect = 6e-06
Identities = 20/113 (17%), Positives = 38/113 (33%)
Query: 141 GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTV 200
+ L L E D E A +A I + I+ +L ++ + + V
Sbjct: 665 DRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAV 724
Query: 201 QVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL 253
Q + + + ++ EE K+ + D +L Q + CL
Sbjct: 725 QHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCL 777
Score = 31.7 bits (71), Expect = 0.43
Identities = 35/235 (14%), Positives = 73/235 (31%), Gaps = 22/235 (9%)
Query: 100 LEKIIKTLK-ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELR 158
L+ I+ +++ Q+ + L S L G+ +L+ L + +R
Sbjct: 292 LQMILAMATTDDELQQRVACECLIAA----SSKKDKAKALCEQGVDILKRLYHSKNDGIR 347
Query: 159 WRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS------IEHDSNTTVQVKSLYAVSCLV 212
RA + + D L L I+ + ++ + ++ L
Sbjct: 348 VRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLT 407
Query: 213 RENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ 272
+ E K + L+ + + + LC + + + + + +
Sbjct: 408 LDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKF 467
Query: 273 MCVLIDIEDALDTE----------MNEHLLSALASLIKD-SPEAQSLCRLEPLNL 316
I E LD NE + +AL +L K S +Q L +
Sbjct: 468 AKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAV 522
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.9 bits (144), Expect = 7e-10
Identities = 56/366 (15%), Positives = 103/366 (28%), Gaps = 114/366 (31%)
Query: 19 LEDSQAQP-NLAIEYAPNQDIP------ARQPRQPSNLQDLLRYAVEAGSRSRAQEAPNI 71
L Q + +E + + RQPS + + R R N
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ-----RDRLY---ND 122
Query: 72 NRAASMNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICI------G----AL 121
N+ + N V+ K+ + L E + K++ I G AL
Sbjct: 123 NQ-----------VFAKYN---VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 122 DNLSDYICSIDYANDF----LKMGG-------LPVLQPLLEGSDPELRWRAAETVADIVQ 170
D Y + DF L + L +LQ LL DP R+ D
Sbjct: 169 DVCLSY--KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS-----DHSS 221
Query: 171 NNPFSQN--------FIIQTDFLNLLLTSIEHD-SNTTVQVKSLYAVSC--LV--REN-- 215
N + + + N LL + + N + + +SC L+ R
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAKA-WNA-FNLSCKILLTTRFKQV 277
Query: 216 --------------EECLKEFIKRDGFSVLLRCIQSKKEKL----------VIKSCFLIA 251
+ + S+LL+ + + + L + +IA
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS---IIA 334
Query: 252 CLCTDN----NQVKQVLLS-MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSP-EA 305
D + K V + + + + + L+ + L+ +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSL-----NVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 306 QSLCRL 311
L +
Sbjct: 390 ILLSLI 395
Score = 54.5 bits (130), Expect = 3e-08
Identities = 43/251 (17%), Positives = 88/251 (35%), Gaps = 63/251 (25%)
Query: 167 DIVQNN--PFSQNFIIQ--TDFLNLLLTSIEHD---SNTTVQVKSLYAVSCLVRENEECL 219
DI+ F NF + D +L+ E D + +L L+ + EE +
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 220 KEFIK---RDGFSVLLRCIQSK-KEKLVIKSCFLIAC---LCTDN--------------N 258
++F++ R + L+ I+++ ++ ++ + I L DN
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY-IEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 259 QVKQVLLSM---------GM--------VEQMCVLIDIEDALDTEM----------NEHL 291
+++Q LL + G+ +C+ ++ +D ++ E +
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 292 LSALASLIKD-SPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNS--VLTEVF 348
L L L+ P S N+K +++ I+ + K Y N VL V
Sbjct: 199 LEMLQKLLYQIDPNWTSRSD-HSSNIKLRIHSIQAE---LRRLLKSKPYENCLLVLLNVQ 254
Query: 349 EEDSPEEFDHQ 359
+ F+
Sbjct: 255 NAKAWNAFNLS 265
Score = 29.8 bits (66), Expect = 1.6
Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 30/147 (20%)
Query: 98 AELEKIIKT---LKENQDQKDICIGALDNLSDYICS-IDY----ANDFLKMGGLPV---- 145
L + I + + D D+ LD Y S I + +M +
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQ---YFYSHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 146 ---LQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD-FLNLLLTSIEH--DSNTT 199
L+ + W A+ ++ + +Q F + +I D L+ +I
Sbjct: 500 FRFLEQKIRHDSTA--WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 200 VQVKSLYAVSCLVR-----ENEECLKE 221
+ S Y + L+R E+E +E
Sbjct: 558 NLICSKY--TDLLRIALMAEDEAIFEE 582
Score = 28.7 bits (63), Expect = 3.9
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 327 HAGNEVYHKELEYVNSVLTEVFEEDSPEEFDHQD 360
H E E +Y + VFE+ + FD +D
Sbjct: 6 HMDFET--GEHQYQYKDILSVFEDAFVDNFDCKD 37
Score = 28.3 bits (62), Expect = 4.8
Identities = 13/76 (17%), Positives = 23/76 (30%), Gaps = 29/76 (38%)
Query: 283 LDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEYVNS 342
+D E EH KD + + F+ + + + S
Sbjct: 7 MDFETGEHQYQY-----KD---------ILSVFED---AFVDNF----DCKDVQ-DMPKS 44
Query: 343 VLTEVFEEDSPEEFDH 358
+L++ EE DH
Sbjct: 45 ILSK-------EEIDH 53
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 1e-07
Identities = 53/307 (17%), Positives = 96/307 (31%), Gaps = 110/307 (35%)
Query: 17 IRLEDSQAQPNLAIEYAPNQDIPARQPRQPSNLQDLLRYAVEAGSRSRAQEAPNINRAAS 76
I + +A PN ++ PS L+D ++E + P
Sbjct: 306 IGVRCYEAYPNTSLP--------------PSILED----SLENN-----EGVP------- 335
Query: 77 MNEANRGFLLDALNSMMVNV-GAELEKIIKTLKE-NQ---DQKDICIGALDNLSD-YICS 130
S M+++ E++ + + N K + I +L N + + S
Sbjct: 336 --------------SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI-SLVNGAKNLVVS 380
Query: 131 IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQ-NFIIQTDFLNLL 188
G P L G + LR A + D Q+ PFS+ FL
Sbjct: 381 -----------GPPQ---SLYGLNLTLRKAKAPSGLD--QSRIPFSERKLKFSNRFLP-- 422
Query: 189 LTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCF 248
+ S H S LV ++ K+ +K + + + +
Sbjct: 423 VASPFH---------SHL----LVPASDLINKDLVKNN--------VSFNAKDIQ----- 456
Query: 249 LIACLCTDNNQVKQVL---LSMGMVEQMCVL-IDIEDALDTEMNEHLL-------SALAS 297
I T + +VL +S +V+ + L + E + H+L S L
Sbjct: 457 -IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT-HILDFGPGGASGLGV 514
Query: 298 LIKDSPE 304
L + +
Sbjct: 515 LTHRNKD 521
Score = 45.8 bits (108), Expect = 2e-05
Identities = 39/281 (13%), Positives = 82/281 (29%), Gaps = 111/281 (39%)
Query: 47 SNLQDLLRYAVEAGSRSRAQEA-PNINRAASMNEANRGFLLDALN------SMMVNV-GA 98
+++ + G R EA PN + S+ E D+L S M+++
Sbjct: 294 VSVRKAITVLFFIGVRC--YEAYPNTSLPPSILE-------DSLENNEGVPSPMLSISNL 344
Query: 99 ELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELR 158
E++ ++ N L P
Sbjct: 345 TQEQVQDY------------------------VNKTNSHL----------------PA-- 362
Query: 159 WRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEEC 218
+ V + N +N ++ + +SLY ++ +R+
Sbjct: 363 ---GKQVEISLVNGA--KNLVV------------------SGPPQSLYGLNLTLRK---- 395
Query: 219 LKEFIKRDGFSVLLRCIQSK----KEKLVIKSCFL-IAC------LCTDNNQVKQVLLSM 267
K D QS+ + KL + FL +A L ++ + + L+
Sbjct: 396 AKAPSGLD---------QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN 446
Query: 268 GM---VEQMCV-LIDIEDALDT-EMNEHLLSALASLIKDSP 303
+ + + + + D D D ++ + + I P
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP 487
Score = 38.9 bits (90), Expect = 0.003
Identities = 32/177 (18%), Positives = 48/177 (27%), Gaps = 52/177 (29%)
Query: 140 MG-GL----PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH 194
MG L Q + +D + ++ DIV NNP
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNP--------------------- 1669
Query: 195 DSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCF------ 248
+ + +REN + DG + + E F
Sbjct: 1670 ---VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS-TSYTFRSEKGL 1725
Query: 249 LIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNE----HLL---SALASL 298
L A T Q L+ E D++ + H L +ALASL
Sbjct: 1726 LSA---TQFTQPALTLMEKAAFE------DLKSKGLIPADATFAGHSLGEYAALASL 1773
Score = 37.3 bits (86), Expect = 0.007
Identities = 30/155 (19%), Positives = 50/155 (32%), Gaps = 61/155 (39%)
Query: 24 AQPNL-AIEYAPNQDIPARQPRQP-------S--------------NLQD---LLRY--- 55
QP L +E A +D+ ++ S +++ ++ Y
Sbjct: 1732 TQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGM 1791
Query: 56 ----AVEAGSRSRAQE---APNINR-AASMNE-----------ANRGFLLDALNSMMVNV 96
AV R+ A N R AAS ++ G+L++ +N NV
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN---YNV 1848
Query: 97 --------G--AELEKIIKTLKENQDQKDICIGAL 121
G L+ + L + QK I I L
Sbjct: 1849 ENQQYVAAGDLRALDTVTNVLNFIKLQK-IDIIEL 1882
Score = 34.6 bits (79), Expect = 0.058
Identities = 32/170 (18%), Positives = 53/170 (31%), Gaps = 43/170 (25%)
Query: 203 KSLYAVSCLVREN-EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVK 261
LY S ++ F GFS +L + + L I F +++
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFS-ILDIVINNPVNLTIH--FGGE----KGKRIR 1685
Query: 262 QVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPE--------AQ------S 307
+ +M + E + + + E+NEH S S + Q
Sbjct: 1686 ENYSAM-IFETIVDGKLKTEKIFKEINEH----STSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 308 LCRLEPLNLKFKLNFIKEKH-AGNEVYHKEL-EY-----VNSVLTEVFEE 350
E +LK K + AG H L EY + V++ E
Sbjct: 1741 KAAFE--DLKSKGLIPADATFAG----H-SLGEYAALASLADVMS--IES 1781
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 46.0 bits (108), Expect = 1e-05
Identities = 28/237 (11%), Positives = 81/237 (34%), Gaps = 21/237 (8%)
Query: 97 GAELEKIIKTLK-ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDP 155
G + K ++ L +++ + I + + ++GG+ L LL +
Sbjct: 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTC--FQDESAKQQVYQLGGICKLVDLLRSPNQ 58
Query: 156 ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVREN 215
++ AA + ++V + ++ + + + ++ + N +Q + + L +
Sbjct: 59 NVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118
Query: 216 EECLKEFIKRDGFSVLLRCI----------------QSKKEKLVIKSCFLIACLCTDNNQ 259
E LKE + D VL + + ++ + + L + +
Sbjct: 119 E--LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG 176
Query: 260 VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSLCRLEPLNL 316
+ + G+++ + + A ++ + + + L S + L
Sbjct: 177 RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL 233
Score = 29.4 bits (65), Expect = 2.3
Identities = 15/142 (10%), Positives = 37/142 (26%), Gaps = 5/142 (3%)
Query: 24 AQPNLAIEYAPNQDIPARQPRQPSNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRG 83
A NL ++ + +++G+ + ++ S +
Sbjct: 307 ALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHR 366
Query: 84 FLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMGGL 143
+ + + + + L ++D + NL A + L
Sbjct: 367 VMGNQVFPEVTRL---LTSHTGNTSNSEDILSSACYTVRNLMA--SQPQLAKQYFSSSML 421
Query: 144 PVLQPLLEGSDPELRWRAAETV 165
+ L S AA +
Sbjct: 422 NNIINLCRSSASPKAAEAARLL 443
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 44.5 bits (105), Expect = 3e-05
Identities = 23/177 (12%), Positives = 57/177 (32%), Gaps = 12/177 (6%)
Query: 141 GGLPVLQPLLEGSDPELRWRAAETVADI-VQNNPFSQNFIIQTDFLNLLLTSIEHDSNTT 199
G + L L+ +L+ A + ++ + + S+ + + + L+ +
Sbjct: 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES 186
Query: 200 VQVKSLYAVSCLVRENEECLKEFIKRDGF-----SVLLRCIQSKKEKLVIKSCFLIACL- 253
L A+ L E + DG L Q+ ++ ++ +
Sbjct: 187 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 246
Query: 254 --CTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSL 308
N +Q+L ++ L+ + + + L +L +P+ Q
Sbjct: 247 SLIATNEDHRQILRENNCLQ---TLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA 300
Score = 40.6 bits (95), Expect = 5e-04
Identities = 25/152 (16%), Positives = 54/152 (35%), Gaps = 16/152 (10%)
Query: 27 NLAIEYAPNQDIPARQPRQPSNLQDLLRYAVEAGSRSRAQEA----PNINRAASMNEANR 82
NL+ N+ + L L Y + + + + N++ + NE +R
Sbjct: 197 NLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256
Query: 83 GFLLDALNSMMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYICSIDYANDFLKMG 141
++ L+ +++ LK + G L NLS + MG
Sbjct: 257 --------QILRENNC-LQTLLQHLKSHSLTIVSNACGTLWNLS--ARNPKDQEALWDMG 305
Query: 142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNP 173
+ +L+ L+ + +A + +++ N P
Sbjct: 306 AVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337
Score = 33.3 bits (76), Expect = 0.095
Identities = 26/196 (13%), Positives = 61/196 (31%), Gaps = 16/196 (8%)
Query: 121 LDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFII 180
L+ + Y C + G+ + + A + + + ++ +
Sbjct: 13 LEQIRAY-CETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE-HRHAMN 70
Query: 181 QTD----FLNLL------LTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGF-S 229
+ LL + T++ + A++ L + G
Sbjct: 71 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 130
Query: 230 VLLRCIQSKKEKLVIKSCFLIACLCTDNNQV-KQVLLSMGMVEQMCVLIDIEDALDTEMN 288
L+ ++S+ E L ++ L + K+ L +G V+ + +
Sbjct: 131 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMEC--ALEVKKESTL 188
Query: 289 EHLLSALASLIKDSPE 304
+ +LSAL +L E
Sbjct: 189 KSVLSALWNLSAHCTE 204
Score = 33.3 bits (76), Expect = 0.11
Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
Query: 117 CIGALDNLSDYICSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFS 175
G L N+S I + D+ + L L L+ + A T+ ++ NP
Sbjct: 238 GGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKD 297
Query: 176 QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEE 217
Q + +++L ++ H + + + S A+ L+
Sbjct: 298 QEALWDMGAVSMLK-NLIHSKHKMIAMGSAAALRNLMANRPA 338
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 44.2 bits (104), Expect = 4e-05
Identities = 23/177 (12%), Positives = 56/177 (31%), Gaps = 12/177 (6%)
Query: 141 GGLPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLTSIEHDSNTT 199
G + L L+ +L+ A + ++ + S+ + + + L+ +
Sbjct: 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES 302
Query: 200 VQVKSLYAVSCLVRENEECLKEFIKRDGF-----SVLLRCIQSKKEKLVIKSCFLIACL- 253
L A+ L E + DG L Q+ ++ ++ +
Sbjct: 303 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 362
Query: 254 --CTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEAQSL 308
N +Q+L ++ L+ + + + L +L +P+ Q
Sbjct: 363 SLIATNEDHRQILRENNCLQ---TLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA 416
Score = 38.4 bits (89), Expect = 0.003
Identities = 25/152 (16%), Positives = 54/152 (35%), Gaps = 16/152 (10%)
Query: 27 NLAIEYAPNQDIPARQPRQPSNLQDLLRYAVEAGSRSRAQEA----PNINRAASMNEANR 82
NL+ N+ + L L Y + + + + N++ + NE +R
Sbjct: 313 NLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 372
Query: 83 GFLLDALNSMMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYICSIDYANDFLKMG 141
++ L+ +++ LK + G L NLS + MG
Sbjct: 373 --------QILRENNC-LQTLLQHLKSHSLTIVSNACGTLWNLSAR--NPKDQEALWDMG 421
Query: 142 GLPVLQPLLEGSDPELRWRAAETVADIVQNNP 173
+ +L+ L+ + +A + +++ N P
Sbjct: 422 AVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453
Score = 33.0 bits (75), Expect = 0.13
Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 2/106 (1%)
Query: 117 CIGALDNLSDYI-CSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFS 175
G L N+S I + D+ + L L L+ + A T+ ++ NP
Sbjct: 354 GGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKD 413
Query: 176 QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKE 221
Q + +++L ++ H + + + S A+ L+ K+
Sbjct: 414 QEALWDMGAVSMLK-NLIHSKHKMIAMGSAAALRNLMANRPAKYKD 458
Score = 28.4 bits (63), Expect = 4.2
Identities = 32/203 (15%), Positives = 73/203 (35%), Gaps = 16/203 (7%)
Query: 96 VGAELEKIIKTLK--ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGS 153
+G ++E + L D+ D L +S S D + G LP+L LL G+
Sbjct: 27 LGTKVEMVYSLLSMLGTHDKDD-MSRTLLAMSS---SQDSCISMRQSGCLPLLIQLLHGN 82
Query: 154 DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR 213
D + + + L+ ++ S D +++ L+ + +
Sbjct: 83 DKDSVLLGNSRGSKEARAR------ASAA--LHNIIHSQPDDKRGRREIRVLHLLEQIRA 134
Query: 214 ENEECLKEFIKRD-GFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ 272
E C + + G + + E + + ++ L D + + + +G ++
Sbjct: 135 YCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQA 193
Query: 273 MCVLIDIEDALDTEMNEHLLSAL 295
+ L+ ++ + N+H L
Sbjct: 194 IAELLQVDCEMYGLTNDHYSITL 216
>3grl_A General vesicular transport factor P115; vesicle transport,
membrane trafficking, membrane tethering, fusion, snare,
RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB:
3gq2_A 2w3c_A
Length = 651
Score = 43.9 bits (103), Expect = 6e-05
Identities = 42/228 (18%), Positives = 84/228 (36%), Gaps = 25/228 (10%)
Query: 96 VGAE-LEKIIKTLKENQDQKDICIGALDNLSDYICSIDYAND------------------ 136
VG + +E +I L+ ++ +I ALD L + I + +
Sbjct: 57 VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEI 116
Query: 137 FLKM-GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPF-SQNFIIQTDFLNLLLTSIEH 194
F+K + +L LLE D +RW + + +++ Q I+ + L +
Sbjct: 117 FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176
Query: 195 DSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK---KEKLVIKSCF-LI 250
DS ++ + + L R N K + F LL I + +V++ C L+
Sbjct: 177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILL 236
Query: 251 ACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASL 298
L +NN + +++M ++ D + + + L
Sbjct: 237 QNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLML 284
Score = 37.8 bits (87), Expect = 0.005
Identities = 34/231 (14%), Positives = 74/231 (32%), Gaps = 33/231 (14%)
Query: 135 NDFLKMGGLPVLQPLL--EGSDPELRWRAAETVADIVQNNPFSQNFIIQTD--------- 183
+ G L L +L G ++ TV+++++ +Q++ +
Sbjct: 305 KAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPA 364
Query: 184 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKR-------------DGFSV 230
+ LL++ + ++ LY C + +N++ E + +
Sbjct: 365 IVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQL 424
Query: 231 LLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV-----EQMCVLIDIEDALDT 285
L + S + +A +N K+ LL + + + +L + L
Sbjct: 425 LCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQ 484
Query: 286 EMNEH----LLSALASLIKDSPEAQSLCRLEPLNLKFKLNFIKEKHAGNEV 332
LL L + + + P A + N+ F I E E
Sbjct: 485 GSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQ 535
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 39.2 bits (90), Expect = 0.002
Identities = 27/182 (14%), Positives = 59/182 (32%), Gaps = 13/182 (7%)
Query: 70 NINRAASMNEANRGFLLDALNSMMVNVGAELEKIIKTLK--ENQDQKDICIGALDNLS-- 125
+ A+ N AN A ++ + I LK + + GA+ NL
Sbjct: 280 ERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAG 339
Query: 126 DYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFL 185
+ + + L + LL + A+ + ++ + +I +
Sbjct: 340 RWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA--RNKELIGKHAI 397
Query: 186 NLLLTSIEHDSNTTVQVKS-------LYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSK 238
L+ ++ + S L ++ ++ EN E K+ + G L+ +S
Sbjct: 398 PNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSG 457
Query: 239 KE 240
Sbjct: 458 NR 459
Score = 38.4 bits (88), Expect = 0.003
Identities = 16/133 (12%), Positives = 48/133 (36%), Gaps = 8/133 (6%)
Query: 141 GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTV 200
LP + +L ++ AA + + N + + + + +L+ ++H V
Sbjct: 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP-KKEV 106
Query: 201 QVKSLYAVSCL----VRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD 256
+ A L +++ DG L+R ++ ++ + + +
Sbjct: 107 HL---GACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS 163
Query: 257 NNQVKQVLLSMGM 269
++ +K ++ +
Sbjct: 164 HDSIKMEIVDHAL 176
Score = 29.9 bits (66), Expect = 1.3
Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 6/141 (4%)
Query: 99 ELEKIIKTLK-ENQDQKDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPEL 157
EL ++I L K L +L + D K+ G+PVL LL+ E+
Sbjct: 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLC--YRNDKVKTDVRKLKGIPVLVGLLDHPKKEV 106
Query: 158 RWRAAETVADI-VQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENE 216
A + +I + ++ I D + L+ + + + + L +
Sbjct: 107 HLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS 166
Query: 217 ECLKEFIKRDGFSVLLRCIQS 237
+K I L +
Sbjct: 167 --IKMEIVDHALHALTDEVII 185
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 37.8 bits (87), Expect = 0.003
Identities = 22/163 (13%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQV 202
L L LL+ + A + I + + L L + ++ +
Sbjct: 34 LKKLIELLDDDLWTVVKNAISIIMVIAKTRE-----DLYEPMLKKLFSLLKKSEAIPLTQ 88
Query: 203 KSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQ 262
+ A + +E E +K I VL + EK I + + + N +
Sbjct: 89 EIAKAFGQMAKEKPELVKSMIP-----VLFANYRIGDEKTKINVSYALEEIAKANPMLMA 143
Query: 263 VLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEA 305
++ + + + + E L+ + ++ ++S +
Sbjct: 144 SIVRD--------FMSMLSSKNREDKLTALNFIEAMGENSFKY 178
Score = 34.3 bits (78), Expect = 0.039
Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 19/136 (13%)
Query: 82 RGFLLDALNSMMVNVGAELEKIIKTLK-----ENQDQKDICIGALDNLSDYICSIDYAND 136
+ + AL + + I++ +N++ K + ++ + + S Y N
Sbjct: 124 KINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN--SFKYVNP 181
Query: 137 FLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS 196
FL P + LL D +R A E + + N + +I+ L + D+
Sbjct: 182 FL-----PRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELN-DT 229
Query: 197 NTTVQVKSLYAVSCLV 212
++ V +S L+
Sbjct: 230 SSLVNKTVKEGISRLL 245
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 37.1 bits (85), Expect = 0.010
Identities = 32/166 (19%), Positives = 53/166 (31%), Gaps = 8/166 (4%)
Query: 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQV 202
+P L L +R T++ + LL I DSN VQ
Sbjct: 402 IPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL-DSNKRVQE 460
Query: 203 KSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQ 262
+ A + L E L ++ L+ + K ++ L + T + V
Sbjct: 461 AACSAFATLEEEACTELVPYLA-YILDTLVFAFSKYQHKNLL---ILYDAIGTLADSVGH 516
Query: 263 VLLSMGMVEQ-MCVLIDIEDALDTEMNE--HLLSALASLIKDSPEA 305
L ++ M LI + L E + LL L+S+
Sbjct: 517 HLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSG 562
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.011
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 8/28 (28%)
Query: 14 KQPIR-LEDSQAQPNLAIEYAPNQDIPA 40
KQ ++ L+ S L + YA + PA
Sbjct: 19 KQALKKLQAS-----LKL-YADDS-APA 39
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Length = 233
Score = 35.7 bits (82), Expect = 0.012
Identities = 17/145 (11%), Positives = 53/145 (36%), Gaps = 5/145 (3%)
Query: 93 MVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYICSIDYAN--DFLKMGGLPVLQPLL 150
++ LE+ + L+ + A + + C ++ G+ L LL
Sbjct: 3 NADMEMTLERAVSMLEADHMLPSRISAAATFIQ-HECFQKSEARKRVNQLRGILKLLQLL 61
Query: 151 EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSC 210
+ + +++ + ++V + ++ + + + + LL ++ + + + +
Sbjct: 62 KVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWN 121
Query: 211 LVRENEECLKEFIKRDGFSVLLRCI 235
L ++ LK + + L I
Sbjct: 122 LSSNDK--LKNLMITEALLTLTENI 144
>1gnl_A HCP, hybrid cluster protein; anaerobic desulfovibrio desulfuricans,
iron anomalous; HET: FSO; 1.25A {Desulfovibrio
desulfuricans} SCOP: e.26.1.1 PDB: 1gn9_A* 1oa0_A*
1upx_A*
Length = 544
Score = 36.1 bits (83), Expect = 0.016
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 47 SNLQDLLRYAVEAGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNVGAELEKIIKT 106
+ LQD L Y + G A +A + +R + L + + N + + + +
Sbjct: 31 AALQDALIYVTK-GLGQIATRLRAEGKAVD-HRIDR-LVTGNLFATITNANFDDDILAER 87
Query: 107 LKENQDQKDICIGALDNLSDY 127
++ K +L + S
Sbjct: 88 VRMTCAAKKELAASLTDKSGL 108
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle,
alternative splicing, endocytosis, lipid-binding, golgi
apparatus, adaptor, membrane, transport; HET: IHP; 2.59A
{Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Length = 621
Score = 34.9 bits (80), Expect = 0.036
Identities = 15/188 (7%), Positives = 67/188 (35%), Gaps = 20/188 (10%)
Query: 133 YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI 192
+ L + L L+ + LR+ A E++ + + + + ++ ++
Sbjct: 321 DSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEF---SHEAVKTHIETVINAL 377
Query: 193 EHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIAC 252
+ + + +V+ +++ + + + ++ + +L +++ + + +A
Sbjct: 378 KTERDVSVRQRAVDLLYAMC--DRSNAQQIVAE-----MLSYLETADYSIREEIVLKVAI 430
Query: 253 LC----TDNNQVKQVLLSMGMVEQMCVLIDIEDAL------DTEMNEHLLSALASLIKDS 302
L D +L++ + V ++ + ++ + + ++
Sbjct: 431 LAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAP 490
Query: 303 PEAQSLCR 310
++L +
Sbjct: 491 ACHENLVK 498
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 618
Score = 34.1 bits (78), Expect = 0.062
Identities = 28/189 (14%), Positives = 63/189 (33%), Gaps = 25/189 (13%)
Query: 133 YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNP-FSQNFIIQTDFLNLLLTS 191
+ L++ + +L L +D +R+ A ++ VQ + Q ++ ++ L
Sbjct: 305 KSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRH--RSTIVDCL--- 359
Query: 192 IEHDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIA 251
D + +++ +++ LV N ++ +K LL + S + + I
Sbjct: 360 --KDLDVSIKRRAMELSFALV--NGNNIRGMMKE-----LLYFLDSCEPEFKADCASGIF 410
Query: 252 CLC----TDNNQVKQVLLSMGMVEQMCVLIDIEDAL------DTEMNEHLLSALASLIKD 301
++ + V D L EM+ + + L I
Sbjct: 411 LAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILG 470
Query: 302 SPEAQSLCR 310
Q L +
Sbjct: 471 DYSQQPLVQ 479
Score = 29.9 bits (67), Expect = 1.4
Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 14/121 (11%)
Query: 120 ALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI 179
AL L + S + D ++ LL+ S+ LR +AA +++ P
Sbjct: 127 ALCTLG-CMGSSEMCRDLA-----GEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMF 180
Query: 180 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEECLKEFIK--RDGFSVLLRCIQS 237
+ ++ ++ N V S+ ++ + + + L F K +L I S
Sbjct: 181 LPA------TKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMS 234
Query: 238 K 238
Sbjct: 235 G 235
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like
repeats, chaperone-protein transport complex; 2.31A
{Saccharomyces cerevisiae}
Length = 315
Score = 33.7 bits (76), Expect = 0.089
Identities = 20/155 (12%), Positives = 50/155 (32%), Gaps = 14/155 (9%)
Query: 100 LEKIIKTLKENQDQKDICIGALDNLSDYICSIDYANDFLKMG-GLPVLQPLLEGSDPELR 158
I + + D + ++ + + L L E LR
Sbjct: 28 RNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLSLNENLPLTLR 87
Query: 159 WRAAETVADIVQNNPFSQNFIIQT--DFLNLLLTSIE------HDSNTTVQVKSLYAVSC 210
+ + ++NNP FI ++ +F + ++ ++ H S+ + + L ++
Sbjct: 88 ELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNE 147
Query: 211 LVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIK 245
L + E + VL + + ++
Sbjct: 148 LPVTS-----EDLPIYSTVVLQNVYERNNKDKQLQ 177
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 33.5 bits (75), Expect = 0.12
Identities = 27/166 (16%), Positives = 56/166 (33%), Gaps = 8/166 (4%)
Query: 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQV 202
+ L + SD + R+ A + +Q + + + + ++L + D N VQ
Sbjct: 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLL-EDKNGEVQN 66
Query: 203 KSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQ 262
++ + LV + +E E I L + S KE+L S + + +
Sbjct: 67 LAVKCLGPLVSKVKEYQVETI----VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122
Query: 263 VLLSMGMVEQM---CVLIDIEDALDTEMNEHLLSALASLIKDSPEA 305
V + + I D + L +A ++
Sbjct: 123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL 168
>1gnt_A HCP, hybrid cluster protein; oxidoreductase, aerobic desulfovibrio
vulgaris; HET: FSO; 1.25A {Desulfovibrio vulgaris} SCOP:
e.26.1.1 PDB: 1e9v_A 1e2u_A* 1oa1_A 1w9m_A 1e1d_A*
Length = 553
Score = 33.0 bits (75), Expect = 0.15
Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 47 SNLQDLLRYAVE--AGSRSRAQEAPNINRAASMNEANRGFLLDALNSMMVNVGAELEKII 104
+NLQDLL + + A + +E +R + F+L L + + N + +
Sbjct: 28 ANLQDLLIFVLRGIAIYGEKLKELGQPDR-----SNDD-FVLQGLFATITNANWDDARFE 81
Query: 105 KTLKENQDQKDICIGALDNLSDYICSIDYAND 136
+ E ++D A + D++
Sbjct: 82 AMISEGLARRDKLRNAFLAVYKAKNGKDFSEP 113
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 32.8 bits (75), Expect = 0.17
Identities = 22/163 (13%), Positives = 66/163 (40%), Gaps = 8/163 (4%)
Query: 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQV 202
L L+ L+ S+P + A +++I +++P S + +N LLT++ ++ Q+
Sbjct: 162 LDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQI 220
Query: 203 KSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQ 262
L +S +++ + +R + + +V+ + ++ +
Sbjct: 221 FILDCLSNYNPKDDREAQSICER-----VTPRLSHANSAVVLSAVKVLMKFLELLPKDSD 275
Query: 263 VLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSPEA 305
+++++ + + + E+ L + +++ PE
Sbjct: 276 YYNM--LLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEI 316
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding
domain, ubiquitin-superfold, armadillo repeats,
actin-binding, coiled coil; 2.30A {Homo sapiens}
Length = 339
Score = 30.9 bits (69), Expect = 0.66
Identities = 13/85 (15%), Positives = 36/85 (42%)
Query: 194 HDSNTTVQVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL 253
+ S+ +SL+++ + +E+++ + EF+ +G S L+R + + L
Sbjct: 128 YSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQL 187
Query: 254 CTDNNQVKQVLLSMGMVEQMCVLID 278
+ + V+ ++ + L
Sbjct: 188 MLFVDGMLGVVAHSDTIQWLYTLCA 212
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 29.8 bits (66), Expect = 1.6
Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 5/97 (5%)
Query: 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH--DSNTTV 200
LP + L+ +++ A + I + S I L ++ + + V
Sbjct: 413 LPSILNLMNDQSLQVKETTAWCIGRIADSVAES---IDPQQHLPGVVQACLIGLQDHPKV 469
Query: 201 QVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQS 237
+ + LV + E I +++ I +
Sbjct: 470 ATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGA 506
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 29.6 bits (66), Expect = 1.7
Identities = 36/205 (17%), Positives = 73/205 (35%), Gaps = 36/205 (17%)
Query: 100 LEKIIKTLKENQDQ-KDICIGALDNLSDYICSIDYANDFLKMGGLPVLQPLLEGSDPELR 158
+ + QD + + + A N++ + D + P L+ E +R
Sbjct: 205 IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVM-----PTLRQAAEDKSWRVR 259
Query: 159 WRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEEC 218
+ A+ ++ + I +TD + ++ D V+ + +
Sbjct: 260 YMVADKFTELQKAVG---PEITKTDLVPAFQNLMK-DCEAEVRAAASHK----------- 304
Query: 219 LKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQ-VKQVLLSMGMVEQMCVLI 277
+KEF + I S+ I C L +D NQ VK L S ++ + ++
Sbjct: 305 VKEFCENLSADCRENVIMSQ-----ILPCIK--ELVSDANQHVKSALAS--VIMGLSPIL 355
Query: 278 DIEDALDTEMNEHLLSALASLIKDS 302
++ + EHLL + +KD
Sbjct: 356 GKDNTI-----EHLLPLFLAQLKDE 375
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane,
protein transport-prote binding complex; HET: GNP; 2.90A
{Bos taurus}
Length = 355
Score = 28.9 bits (64), Expect = 2.6
Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 125 SDYICSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDF 184
+ I ++ + + VLQ LR+ A T+ + +P +
Sbjct: 271 ASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP----SAVTA-- 324
Query: 185 LNLLLTSIEHDSNTTVQVKSLYAVSCLVRENEE 217
NL L ++ D+N ++ + A++ L++ E
Sbjct: 325 CNLDLENLVTDANRSI---ATLAITTLLKTGSE 354
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 28.4 bits (64), Expect = 2.7
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 143 LPVLQPLLEGSDPELRWRAAETVADI 168
+ L L+ D +R AA + I
Sbjct: 78 VEPLIKALKDEDGWVRQSAAVALGQI 103
Score = 27.7 bits (62), Expect = 5.0
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 143 LPVLQPLLEGSDPELRWRAAETVADI 168
+ + L+ +R AA + I
Sbjct: 16 VEMYIKNLQDDSYYVRRAAAYALGKI 41
Score = 26.9 bits (60), Expect = 8.8
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 143 LPVLQPLLEGSDPELRWRAAETVADI 168
+ L L+ D +R AA+ + I
Sbjct: 47 VEPLIKALKDEDAWVRRAAADALGQI 72
Score = 26.9 bits (60), Expect = 9.8
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 143 LPVLQPLLEGSDPELRWRAAETVADI 168
+ L L+ D +R AA+ + +I
Sbjct: 140 VEPLIKALKDEDGWVRQSAADALGEI 165
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 28.5 bits (64), Expect = 2.8
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 143 LPVLQPLLEGSDPELRWRAAETVADI 168
+ L L+ D +R AA + I
Sbjct: 83 VEPLIKALKDEDGWVRQSAAVALGQI 108
Score = 28.1 bits (63), Expect = 4.2
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 143 LPVLQPLLEGSDPELRWRAAETVADI 168
+ L L+ D +R AA+ + +I
Sbjct: 145 VEPLIKALKDEDGWVRQSAADALGEI 170
Score = 28.1 bits (63), Expect = 4.3
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 143 LPVLQPLLEGSDPELRWRAAETVADI 168
+ L L+ D +R AA+ + I
Sbjct: 52 VEPLIKALKDEDAWVRRAAADALGQI 77
Score = 27.3 bits (61), Expect = 5.8
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 143 LPVLQPLLEGSDPELRWRAAETVADI 168
+ + L+ +R AA + I
Sbjct: 21 VEMYIKNLQDDSYYVRRAAAYALGKI 46
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 27.6 bits (62), Expect = 3.5
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 143 LPVLQPLLEGSDPELRWRAAETVADI 168
+ L LLE +R AA ++ I
Sbjct: 75 VEPLIKLLEDDSGFVRSGAARSLEQI 100
Score = 27.3 bits (61), Expect = 4.9
Identities = 2/26 (7%), Positives = 9/26 (34%)
Query: 143 LPVLQPLLEGSDPELRWRAAETVADI 168
L + + +R + ++ +
Sbjct: 14 LVPRGSHMADENKWVRRDVSTALSRM 39
Score = 26.9 bits (60), Expect = 6.2
Identities = 4/21 (19%), Positives = 6/21 (28%)
Query: 143 LPVLQPLLEGSDPELRWRAAE 163
++ L E R A
Sbjct: 106 RAAMEKLAETGTGFARKVAVN 126
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics;
5.00A {Barmah forest virus}
Length = 253
Score = 28.4 bits (63), Expect = 3.5
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 15 QPIRLEDSQAQPNLAIEYAPNQDIPARQPRQPSNLQDLLRYAVEAGSRSRAQEAP 69
Q + P P P R+ R PS LQ L+ A+ A + Q+
Sbjct: 7 QTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVA-ALGALALQPKQKQK 60
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.7 bits (64), Expect = 4.2
Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 26/109 (23%)
Query: 253 LCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDT----EMNEHLLSALASLIKDSPEAQSL 308
L + NN + + +E+M V T EM +LL L +PE L
Sbjct: 678 LMSANNIIAEG------IEKMGVR--------TFSQKEMAFNLLGLL------TPEVVEL 717
Query: 309 CRLEPLNLKF--KLNFIKEKHAGNEVYHKELEYVNSVLTEVFEEDSPEE 355
C+ P+ L F+ E KEL + V V E + E
Sbjct: 718 CQKSPVMADLNGGLQFVPELKEFTAKLRKELVETSEVRKAVSIETALEH 766
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 28.2 bits (63), Expect = 4.4
Identities = 7/65 (10%), Positives = 20/65 (30%), Gaps = 6/65 (9%)
Query: 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQV 202
+ + + R A + I + + N+L +D + V+
Sbjct: 56 VRLAIEFCSDKNYIRRDIGAFILGQIKICKK------CEDNVFNILNNMALNDKSACVRA 109
Query: 203 KSLYA 207
++ +
Sbjct: 110 TAIES 114
Score = 27.5 bits (61), Expect = 6.7
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 143 LPVLQPLLEGSDPELRWRAAETVADI 168
L LL+ + R +A +
Sbjct: 25 DDELFRLLDDHNSLKRISSARVLQLR 50
Score = 27.5 bits (61), Expect = 7.1
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 144 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVK 203
+ L +R A E+ A + NP I++ D +T V+
Sbjct: 94 ILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVE------QSQITAFDKSTNVRRA 147
Query: 204 SLYAVSCL 211
+ +A+S +
Sbjct: 148 TAFAISVI 155
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 28.1 bits (62), Expect = 4.5
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 85 LLDALNSMMVNVGAE--LEKIIKTLKE-NQDQKDICIGALDNLSDYICSIDYANDFLKMG 141
L +A++++ + E E I+++L N K + LK+
Sbjct: 118 LREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLL 177
Query: 142 GLPVLQPLLEGSDPELRWRAAETVADIVQ 170
L L DP +R +AE + +++
Sbjct: 178 -TTSLVKTLNEPDPTVRDSSAEALGTLIK 205
>3da5_A Argonaute; PAZ domain, RNA binding, SH3-like barrel, RNA binding
protein; 1.94A {Thermococcus thioreducens}
Length = 128
Score = 27.0 bits (59), Expect = 5.3
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 201 QVKSLYAVSCLVRENEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCF 248
Q++S + LV N++ L++F+K ++LLR I S + K+V K F
Sbjct: 4 QIRSKKTLWELVGRNKDALRDFLKEHRGTILLRDIAS-EHKVVYKPIF 50
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule,
XMAP215, STU2, DIS1, microtubule associated protein,
structural protein; 1.90A {Caenorhabditis elegans}
Length = 266
Score = 27.8 bits (61), Expect = 5.4
Identities = 22/172 (12%), Positives = 54/172 (31%), Gaps = 18/172 (10%)
Query: 146 LQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSL 205
L L D + A +++ + +P ++ + +D L T ++N +K L
Sbjct: 51 LMSQLFHKDFKQHLAALDSLVRLADTSP--RSLLSNSDLLLKWCTLRFFETNPAALIKVL 108
Query: 206 YAVSCLV---RENEECLKEFIKRDGFSVLLRCIQSKKEKL--VIKSCFLIACLCTDNNQV 260
+V R+ E + + LL K+ + ++ + ++
Sbjct: 109 ELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKM 168
Query: 261 KQVLLS----------MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 302
+LL + + I + + + +A + D
Sbjct: 169 TPMLLDALKSKNARQRSECLLVIEYYIT-NAGISPLKSLSVEKTVAPFVGDK 219
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein,
unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Length = 240
Score = 27.2 bits (59), Expect = 7.8
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 143 LPVLQPLLEGSDPELRWRAAETVADIVQNNP 173
+ + L E +R + DI + P
Sbjct: 180 IRRIADLKEDVSEYVRKSVGNALRDISKKFP 210
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.377
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,129,382
Number of extensions: 299236
Number of successful extensions: 871
Number of sequences better than 10.0: 1
Number of HSP's gapped: 815
Number of HSP's successfully gapped: 116
Length of query: 361
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 266
Effective length of database: 4,049,298
Effective search space: 1077113268
Effective search space used: 1077113268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.7 bits)