BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14166
(264 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 86/121 (71%)
Query: 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTS 169
R+ +VLIG SGVGRS +K L++ +P+KF PYTTRP + EEDGKEYHF+S E MT
Sbjct: 19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTR 78
Query: 170 LISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIA 229
ISA + +EFG Y+G+++GT ++V ++ ++A+L+ Q+LK++R+ P ++FIA
Sbjct: 79 NISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIA 138
Query: 230 P 230
P
Sbjct: 139 P 139
>pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kinase-Like Domain Of
Human Cask
Length = 180
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 80/123 (65%)
Query: 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMT 168
+R+ +VL+G GVGR +K LI PD+F P+TTRP K EE+GK Y+FVSH+ M
Sbjct: 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMM 63
Query: 169 SLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFI 228
IS + +E+G ++ +YGT +++ ++ G +A+L+ Q+LKVLR+ F P V+FI
Sbjct: 64 QDISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFI 123
Query: 229 APP 231
A P
Sbjct: 124 AAP 126
>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
With Gmp And Adp
Length = 198
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 76/128 (59%)
Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
RPVVL GPSG G+S L ++L F +TTR +PGEEDGK+Y+FV+ E M
Sbjct: 5 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRD 64
Query: 171 ISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAP 230
I+AG IE E+ G+LYGTS ++V + R+ VL+ Q ++ ++ P+ +F+ P
Sbjct: 65 IAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQP 124
Query: 231 PPFAALKE 238
P L++
Sbjct: 125 PSLDVLEQ 132
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 87/147 (59%), Gaps = 4/147 (2%)
Query: 93 EIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG 152
+IPT E LY ++ RP+V+ GPSG G+S L ++L A PD F P TTR + G
Sbjct: 3 DIPTTE---NLYFQGSMSRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVPSTTRTPRAG 59
Query: 153 EEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQS 212
E +GK+Y+FVS + S+I + IE+ ++ G+ YG++ SV ++ SG+ +L+ Q
Sbjct: 60 EVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQG 119
Query: 213 LKVLRS-PAFKPLVLFIAPPPFAALKE 238
+K +++ P LFIAPP LK+
Sbjct: 120 VKSVKAIPELNARFLFIAPPSVEDLKK 146
>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of
Psd-95
pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
Length = 301
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 7/145 (4%)
Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVS-HETMTS 169
RP++++GP+ + L++ PDKF P+TTRPK+ E DG++YHFVS E M
Sbjct: 112 RPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEK 168
Query: 170 LISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIA 229
I A K IE G+Y HLYGTS SV E+ G+ +L+ + +++ L++ P+ +FI
Sbjct: 169 DIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIR 228
Query: 230 PPPFAALKE--SRIT-AFARSPFDQ 251
P + E RIT AR FD+
Sbjct: 229 PRSLENVLEINKRITEEQARKAFDR 253
>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
Length = 295
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 7/145 (4%)
Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVS-HETMTS 169
RP++++GP+ + L++ PDKF P+TTRPK+ E DG++YHFVS E M
Sbjct: 106 RPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEK 162
Query: 170 LISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIA 229
I A K IE G+Y HLYGTS SV E+ G+ +L+ + +++ L++ P+ +FI
Sbjct: 163 DIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIR 222
Query: 230 PPPFAALKE--SRIT-AFARSPFDQ 251
P + E RIT AR FD+
Sbjct: 223 PRSLENVLEINKRITEEQARKAFDR 247
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 92/165 (55%), Gaps = 11/165 (6%)
Query: 92 EEIPTYEEVAKLYPMET-LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKK 150
+ + +YE V + ME RP++++GP+ + L++ PDKF P+TTRPK+
Sbjct: 515 DSVLSYETVTQ---MEVHYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKR 568
Query: 151 PGEEDGKEYHFVS-HETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPA 209
E DG++YHFVS E M I A K IE G+Y HLYGTS SV E+ G+ +L+ +
Sbjct: 569 EYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVS 628
Query: 210 YQSLKVLRSPAFKPLVLFIAPPPFAALKE--SRIT-AFARSPFDQ 251
+++ L++ P+ +FI P + E RIT AR FD+
Sbjct: 629 ANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDR 673
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
And Its Substrate Gmp At 2.0 Angstroms Resolution
Length = 187
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 77/129 (59%), Gaps = 1/129 (0%)
Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
RP+V+ GPSG G+S L ++L A PD F TTR + GE +GK+Y+FVS + S+
Sbjct: 3 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 62
Query: 171 ISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRS-PAFKPLVLFIA 229
I + IE+ ++ G+ YG++ SV ++ SG+ +L+ Q +K +++ P LFIA
Sbjct: 63 IKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIA 122
Query: 230 PPPFAALKE 238
PP LK+
Sbjct: 123 PPSVEDLKK 131
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 77/129 (59%), Gaps = 1/129 (0%)
Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
RP+V+ GPSG G+S L ++L A PD F TTR + GE +GK+Y+FVS + S+
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 61
Query: 171 ISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRS-PAFKPLVLFIA 229
I + IE+ ++ G+ YG++ SV ++ SG+ +L+ Q +K +++ P LFIA
Sbjct: 62 IKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIA 121
Query: 230 PPPFAALKE 238
PP LK+
Sbjct: 122 PPSVEDLKK 130
>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold
Proteins As Specific Phospho-Protein Binding Modules
Length = 296
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 80/145 (55%), Gaps = 7/145 (4%)
Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFV-SHETMTS 169
RPV+++GP + + LI+ PDKF P+TTRPK+ E DG++YHFV S E M
Sbjct: 107 RPVIILGPM---KDRVNDDLISEFPDKFGSCVPHTTRPKRDYEVDGRDYHFVTSREQMEK 163
Query: 170 LISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIA 229
I K IE G+Y HLYGTS SV + G+ +L+ + ++K L+ P+ +FI
Sbjct: 164 DIQEHKFIEAGQYNNHLYGTSVQSVRAVAEKGKHCILDVSGNAIKRLQIAQLYPISIFIK 223
Query: 230 PPPFAALKE--SRIT-AFARSPFDQ 251
P + E R+T AR F++
Sbjct: 224 PKSMENIMEMNKRLTDEQARKTFER 248
>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
Length = 292
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 82/148 (55%), Gaps = 6/148 (4%)
Query: 92 EEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKP 151
E + +YE V +L T RPV+++GP + + LI+ PDKF P+TTRPK+
Sbjct: 84 ENVLSYEAVQRLSINYT--RPVIILGPL---KDRINDDLISEYPDKFGSCVPHTTRPKRE 138
Query: 152 GEEDGKEYHFV-SHETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAY 210
E DG++YHFV S E M I IE G+Y +LYGTS SV E+ G+ +L+ +
Sbjct: 139 YEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSG 198
Query: 211 QSLKVLRSPAFKPLVLFIAPPPFAALKE 238
++K L+ P+ +FI P ++ E
Sbjct: 199 NAIKRLQVAQLYPVAVFIKPKSVDSVME 226
>pdb|2J41|A Chain A, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|B Chain B, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|C Chain C, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|D Chain D, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
Length = 207
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 63/126 (50%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLIS 172
+VL GPSGVG+ +++R+ + TTR + GE DG +Y F + + +LI
Sbjct: 9 IVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIK 68
Query: 173 AGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPP 232
+ IE+ EY G+ YGT V + ++ G L + K +R L +F+APP
Sbjct: 69 DDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPS 128
Query: 233 FAALKE 238
L+E
Sbjct: 129 LEHLRE 134
>pdb|3TR0|A Chain A, Structure Of Guanylate Kinase (Gmk) From Coxiella Burnetii
Length = 205
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 3/129 (2%)
Query: 114 VLIGPSGVGRSELKRRLI-ALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLIS 172
++ PSG G++ L R L+ AL K + +TTRPK+PG+++G +Y F+ + +
Sbjct: 11 IISAPSGAGKTSLVRALVKALAEIKIS--ISHTTRPKRPGDQEGVDYFFIDETRFQAXVK 68
Query: 173 AGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPP 232
G +E YGT D VL + +GR +L +Q + +R L +FI PP
Sbjct: 69 EGAFLEHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPS 128
Query: 233 FAALKESRI 241
AL+E I
Sbjct: 129 IEALRERLI 137
>pdb|3TAU|A Chain A, Crystal Structure Of A Putative Guanylate Monophosphaste
Kinase From Listeria Monocytogenes Egd-E
pdb|3TAU|B Chain B, Crystal Structure Of A Putative Guanylate Monophosphaste
Kinase From Listeria Monocytogenes Egd-E
Length = 208
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPD-KFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLI 171
+VL GPSGVG+ + R + DP+ F TTR + GE+DG +Y+F S E I
Sbjct: 11 IVLSGPSGVGKGTV-REAVFKDPETSFDYSISXTTRLPREGEQDGVDYYFRSREVFEQAI 69
Query: 172 SAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPP 231
GK +E+ EY G+ YGT + V E + +G L Q +R + + +F+ PP
Sbjct: 70 KDGKXLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAXQVRKAXPEGIFIFLTPP 129
Query: 232 PFAALK 237
+ LK
Sbjct: 130 DLSELK 135
>pdb|2AN9|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2AN9|B Chain B, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2ANB|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gmp
pdb|2ANC|A Chain A, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|B Chain B, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|C Chain C, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|D Chain D, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|E Chain E, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|F Chain F, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2F3R|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3R|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3T|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|C Chain C, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|D Chain D, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|E Chain E, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|F Chain F, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
Length = 207
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
Query: 114 VLIGPSGVGRSELKRRLIALDPDKFTQVT-PYTTRPKKPGEEDGKEYHFVSHETMTSLIS 172
++ PSG G+S L + L+ P TQV+ +TTR +PGE G+ Y FV+H+ +IS
Sbjct: 8 IVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMIS 67
Query: 173 AGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPP 231
+E E G+ YGTS +++ +++ +G L+ +Q + +R +FI PP
Sbjct: 68 RDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPP 126
>pdb|1S96|A Chain A, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
pdb|1S96|B Chain B, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
Length = 219
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 1/119 (0%)
Query: 114 VLIGPSGVGRSELKRRLIALDPDKFTQVT-PYTTRPKKPGEEDGKEYHFVSHETMTSLIS 172
++ PSG G+S L + L+ P TQV+ +TTR +PGE G+ Y FV+H+ IS
Sbjct: 20 IVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEXIS 79
Query: 173 AGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPP 231
+E E G+ YGTS +++ +++ +G L+ +Q + +R +FI PP
Sbjct: 80 RDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKXPHARSIFILPP 138
>pdb|2QOR|A Chain A, Crystal Structure Of Plasmodium Vivax Guanylate Kinase
Length = 204
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 2/127 (1%)
Query: 112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLI 171
P+V+ GPSGVG+ L +++++ P +F TTR K+ E +G +Y+FV + +
Sbjct: 14 PLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKL 73
Query: 172 SAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAF--KPLVLFIA 229
G+ +EF +Y + YGT V G++ + +K L+ + +F+
Sbjct: 74 KEGQFLEFDKYANNFYGTLKSEYDLAVGEGKICLFEXNINGVKQLKESKHIQDGIYIFVK 133
Query: 230 PPPFAAL 236
PP L
Sbjct: 134 PPSIDIL 140
>pdb|3LNC|A Chain A, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
pdb|3LNC|B Chain B, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
Length = 231
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLIS 172
+VL PSG G++ + +L+ + + TTR + GE++GK+Y+FV E L S
Sbjct: 30 LVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89
Query: 173 AGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQ-SLKVLRSPAFKPLVLFIAPP 231
G++IE E G+ YG ++ + V+ G +L +Q + K + + +FI PP
Sbjct: 90 NGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPP 149
Query: 232 PFAALK 237
L+
Sbjct: 150 SMEELR 155
>pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium
Tuberculosis Guanylate Kinase
pdb|1ZNX|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gmp
pdb|1ZNY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gdp
pdb|1ZNZ|A Chain A, Crystal Structure Of The Reduced Form Of Mycobacterium
Tuberculosis Guanylate Kinase In Complex With Gdp
Length = 207
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 3/129 (2%)
Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
R VVL GPS VG+S + R L P+ V+ TTR +PGE DG +YHF+ L
Sbjct: 21 RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVS-ATTRAPRPGEVDGVDYHFIDPTRFQQL 79
Query: 171 ISAGKMIEFGEYKGHLY--GTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFI 228
I G+++E+ E G L+ GT + V +G ++ + ++ + + +F+
Sbjct: 80 IDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFL 139
Query: 229 APPPFAALK 237
APP + L+
Sbjct: 140 APPSWQDLQ 148
>pdb|1Z8F|A Chain A, Guanylate Kinase Double Mutant A58c, T157c From
Mycobacterium Tuberculosis (Rv1389)
Length = 228
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 3/133 (2%)
Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
R VVL GPS VG+S + R L P+ V+ TTR +PGE DG +YHF+ L
Sbjct: 24 RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVS-ATTRCPRPGEVDGVDYHFIDPTRFQQL 82
Query: 171 ISAGKMIEFGEYKGHLY--GTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFI 228
I G+++E+ E G L+ GT + V +G ++ + ++ + + +F+
Sbjct: 83 IDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFL 142
Query: 229 APPPFAALKESRI 241
APP + L+ I
Sbjct: 143 APPSWQDLQARLI 155
>pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium
Tuberculosis (Rv1389)
Length = 228
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 3/133 (2%)
Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
R VVL GPS VG+S + R L P+ V+ TTR +PGE DG +YHF+ L
Sbjct: 24 RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVS-ATTRAPRPGEVDGVDYHFIDPTRFQQL 82
Query: 171 ISAGKMIEFGEYKGHLY--GTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFI 228
I G+++E+ E G L+ GT + V +G ++ + ++ + + +F+
Sbjct: 83 IDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFL 142
Query: 229 APPPFAALKESRI 241
APP + L+ I
Sbjct: 143 APPSWQDLQARLI 155
>pdb|1Z6G|A Chain A, Crystal Structure Of Guanylate Kinase From Plasmodium
Falciparum
Length = 218
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Query: 112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLI 171
P+V+ GPSGVG+ L ++L+ P+ F TTR K+ E++G +Y+F+ +
Sbjct: 25 PLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84
Query: 172 SAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAF--KPLVLFIA 229
+E+ Y + YGT + ++ + +K L+ L +FI
Sbjct: 85 KNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIK 144
Query: 230 PPPFAAL 236
PP L
Sbjct: 145 PPSTDVL 151
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 8/39 (20%)
Query: 111 RPVVLIGPSGVGRSELKRRL--------IALDPDKFTQV 141
+ +++IGP+GVG++E+ RRL I ++ KFT+V
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEV 89
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 8/39 (20%)
Query: 111 RPVVLIGPSGVGRSELKRRL--------IALDPDKFTQV 141
+ +++IGP+GVG++E+ RRL I ++ KFT+V
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEV 89
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 8/39 (20%)
Query: 111 RPVVLIGPSGVGRSELKRRL--------IALDPDKFTQV 141
+ +++IGP+GVG++E+ RRL I ++ KFT+V
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEV 89
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 8/39 (20%)
Query: 111 RPVVLIGPSGVGRSELKRRL--------IALDPDKFTQV 141
+ +++IGP+GVG++E+ RRL I ++ KFT+V
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEV 88
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 8/39 (20%)
Query: 111 RPVVLIGPSGVGRSELKRRL--------IALDPDKFTQV 141
+ +++IGP+GVG++E+ RRL I ++ KFT+V
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEV 95
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 8/39 (20%)
Query: 111 RPVVLIGPSGVGRSELKRRL--------IALDPDKFTQV 141
+ ++ IGP+GVG++E+ RRL I ++ KFT+V
Sbjct: 51 KNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEV 89
>pdb|3BBN|E Chain E, Homology Model For The Spinach Chloroplast 30s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 308
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 115 LIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAG 174
L G + G S L + A+D K + T + ++ KK DG E + V +T ++ G
Sbjct: 111 LYGAAYSGESLLGNDVYAMD-SKIKKATGFGSKSKKEKIRDGFEENVVQVRRVTKVVKGG 169
Query: 175 KMIEF------GEYKGHLYGTSSDSVLELVNSGRVAVLN 207
K + F G+ KG + G E+V++ + A ++
Sbjct: 170 KHMRFRAIVVVGDKKGQV-GVGVGKAKEVVSAVQKAAVD 207
>pdb|2AL2|A Chain A, Crystal Structure Analysis Of Enolase Mg Subunit Complex
At Ph 8.0
Length = 436
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 35 GPCGPRLDAACIPLVKIADTVYSSPSKAKSPTGLSCSAAVKTKKIIYDLAETDDF----- 89
G P + A L I D + ++ K GL C+++ K YDL DF
Sbjct: 212 GGVAPNIQTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFFKDGKYDL----DFKNPNS 267
Query: 90 DREEIPTYEEVAKLYPMETLRRPVVLI 116
D+ + T ++A LY R P+V I
Sbjct: 268 DKSKWLTGPQLADLYHSLMKRYPIVSI 294
>pdb|1ELS|A Chain A, Catalytic Metal Ion Binding In Enolase: The Crystal
Structure Of Enolase-Mn2+-Phosphonoacetohydroxamate
Complex At 2.4 Angstroms Resolution
pdb|1NEL|A Chain A, Fluoride Inhibition Of Yeast Enolase: Crystal Structure Of
The Enolase-mg2+-f--pi Complex At 2.6-angstroms
Resolution
pdb|3ENL|A Chain A, Refined Structure Of Yeast Apo-Enolase At 2.25 Angstroms
Resolution
pdb|4ENL|A Chain A, Crystal Structure Of Holoenzyme Refined At 1.9 Angstroms
Resolution: Trigonal-Bipyramidal Geometry Of The Cation
Binding Site
pdb|5ENL|A Chain A, Inhibition Of Enolase: The Crystal Structures Of Enolase-
Ca2+-Phosphoglycerate And Enolase-Zn2+-Phosphoglycolate
Complexes At 2.2-Angstroms Resolution
pdb|6ENL|A Chain A, Inhibition Of Enolase: The Crystal Structures Of Enolase-
Ca2+-Phosphoglycerate And Enolase-Zn2+-Phosphoglycolate
Complexes At 2.2-Angstroms Resolution
pdb|7ENL|A Chain A, Mechanism Of Enolase: The Crystal Structure Of
Enolase-Mg2+- Phosphoglycerate(Slash)
Phosphoenolpyruvate Complex At 2.2-Angstroms Resolution
Length = 436
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 35 GPCGPRLDAACIPLVKIADTVYSSPSKAKSPTGLSCSAAVKTKKIIYDLAETDDF----- 89
G P + A L I D + ++ K GL C+++ K YDL DF
Sbjct: 212 GGVAPNIQTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFFKDGKYDL----DFKNPNS 267
Query: 90 DREEIPTYEEVAKLYPMETLRRPVVLI 116
D+ + T ++A LY R P+V I
Sbjct: 268 DKSKWLTGPQLADLYHSLMKRYPIVSI 294
>pdb|1L8P|A Chain A, Mg-phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
pdb|1L8P|B Chain B, Mg-phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
pdb|1L8P|C Chain C, Mg-phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
pdb|1L8P|D Chain D, Mg-phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
Length = 436
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 35 GPCGPRLDAACIPLVKIADTVYSSPSKAKSPTGLSCSAAVKTKKIIYDLAETDDF----- 89
G P + A L I D + ++ K GL C+++ K YDL DF
Sbjct: 212 GGVAPNIQTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFFKDGKYDL----DFKNPNS 267
Query: 90 DREEIPTYEEVAKLYPMETLRRPVVLI 116
D+ + T ++A LY R P+V I
Sbjct: 268 DKSKWLTGPQLADLYHSLMKRYPIVSI 294
>pdb|1EBG|A Chain A, Chelation Of Ser 39 To Mg2+ Latches A Gate At The Active
Site Of Enolase: Structure Of The Bis(Mg2+) Complex Of
Yeast Enolase And The Intermediate Analog
Phosphonoacetohydroxamate At 2.1 Angstroms Resolution
pdb|1EBG|B Chain B, Chelation Of Ser 39 To Mg2+ Latches A Gate At The Active
Site Of Enolase: Structure Of The Bis(Mg2+) Complex Of
Yeast Enolase And The Intermediate Analog
Phosphonoacetohydroxamate At 2.1 Angstroms Resolution
pdb|1EBH|A Chain A, Octahedral Coordination At The High Affinity Metal Site In
Enolase; Crystallographic Analysis Of The Mg++-Enzyme
From Yeast At 1.9 Angstroms Resolution
pdb|1EBH|B Chain B, Octahedral Coordination At The High Affinity Metal Site In
Enolase; Crystallographic Analysis Of The Mg++-Enzyme
From Yeast At 1.9 Angstroms Resolution
pdb|1ONE|A Chain A, Yeast Enolase Complexed With An Equilibrium Mixture Of 2'-
Phosphoglyceate And Phosphoenolpyruvate
pdb|1ONE|B Chain B, Yeast Enolase Complexed With An Equilibrium Mixture Of 2'-
Phosphoglyceate And Phosphoenolpyruvate
pdb|2ONE|A Chain A, Asymmetric Yeast Enolase Dimer Complexed With Resolved 2'-
Phosphoglycerate And Phosphoenolpyruvate
pdb|2ONE|B Chain B, Asymmetric Yeast Enolase Dimer Complexed With Resolved 2'-
Phosphoglycerate And Phosphoenolpyruvate
pdb|2AL1|A Chain A, Crystal Structure Analysis Of Enolase Mg Subunit Complex
At Ph 8.0
pdb|2AL1|B Chain B, Crystal Structure Analysis Of Enolase Mg Subunit Complex
At Ph 8.0
Length = 436
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 35 GPCGPRLDAACIPLVKIADTVYSSPSKAKSPTGLSCSAAVKTKKIIYDLAETDDF----- 89
G P + A L I D + ++ K GL C+++ K YDL DF
Sbjct: 212 GGVAPNIQTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFFKDGKYDL----DFKNPNS 267
Query: 90 DREEIPTYEEVAKLYPMETLRRPVVLI 116
D+ + T ++A LY R P+V I
Sbjct: 268 DKSKWLTGPQLADLYHSLMKRYPIVSI 294
>pdb|1P48|A Chain A, Reverse Protonation Is The Key To General Acid-Base
Catalysis In Enolase
pdb|1P48|B Chain B, Reverse Protonation Is The Key To General Acid-Base
Catalysis In Enolase
Length = 436
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 35 GPCGPRLDAACIPLVKIADTVYSSPSKAKSPTGLSCSAAVKTKKIIYDLAETDDF----- 89
G P + A L I D + ++ K GL C+++ K YDL DF
Sbjct: 212 GGVAPNIQTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFFKDGKYDL----DFKNPNS 267
Query: 90 DREEIPTYEEVAKLYPMETLRRPVVLI 116
D+ + T ++A LY R P+V I
Sbjct: 268 DKSKWLTGPQLADLYHSLMKRYPIVSI 294
>pdb|1P43|A Chain A, Reverse Protonation Is The Key To General Acid-Base
Catalysis In Enolase
pdb|1P43|B Chain B, Reverse Protonation Is The Key To General Acid-Base
Catalysis In Enolase
Length = 436
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 35 GPCGPRLDAACIPLVKIADTVYSSPSKAKSPTGLSCSAAVKTKKIIYDLAETDDF----- 89
G P + A L I D + ++ K GL C+++ K YDL DF
Sbjct: 212 GGVAPNIQTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFFKDGKYDL----DFKNPNS 267
Query: 90 DREEIPTYEEVAKLYPMETLRRPVVLI 116
D+ + T ++A LY R P+V I
Sbjct: 268 DKSKWLTGPQLADLYHSLMKRYPIVSI 294
>pdb|2AL2|B Chain B, Crystal Structure Analysis Of Enolase Mg Subunit Complex
At Ph 8.0
Length = 436
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 35 GPCGPRLDAACIPLVKIADTVYSSPSKAKSPTGLSCSAAVKTKKIIYDLAETDDF----- 89
G P + A L I D + ++ K GL C+++ K YDL DF
Sbjct: 212 GGVAPNIQTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFFKDGKYDL----DFKNPNS 267
Query: 90 DREEIPTYEEVAKLYPMETLRRPVVLI 116
D+ + T ++A LY R P+V I
Sbjct: 268 DKSKWLTGPQLADLYHSLMKRYPIVSI 294
>pdb|2XGZ|A Chain A, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n D321r Mutant Of Yeast Enolase 1
pdb|2XGZ|B Chain B, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n D321r Mutant Of Yeast Enolase 1
Length = 443
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 35 GPCGPRLDAACIPLVKIADTVYSSPSKAKSPTGLSCSAAVKTKKIIYDLAETDDF----- 89
G P + A L I D + ++ K GL C+++ K YDL DF
Sbjct: 212 GGVAPNIQTAEEALDLIVDAIKAAGHDGKIKIGLDCASSEFFKDGKYDL----DFKNPNS 267
Query: 90 DREEIPTYEEVAKLYPMETLRRPVVLI 116
D+ + T ++A LY R P+V I
Sbjct: 268 DKSKWLTGPQLADLYHSLMKRYPIVSI 294
>pdb|2XH2|A Chain A, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n D321a Mutant Of Yeast Enolase 1
pdb|2XH2|B Chain B, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n D321a Mutant Of Yeast Enolase 1
pdb|2XH2|C Chain C, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n D321a Mutant Of Yeast Enolase 1
pdb|2XH2|D Chain D, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n D321a Mutant Of Yeast Enolase 1
Length = 443
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 35 GPCGPRLDAACIPLVKIADTVYSSPSKAKSPTGLSCSAAVKTKKIIYDLAETDDF----- 89
G P + A L I D + ++ K GL C+++ K YDL DF
Sbjct: 212 GGVAPNIQTAEEALDLIVDAIKAAGHDGKIKIGLDCASSEFFKDGKYDL----DFKNPNS 267
Query: 90 DREEIPTYEEVAKLYPMETLRRPVVLI 116
D+ + T ++A LY R P+V I
Sbjct: 268 DKSKWLTGPQLADLYHSLMKRYPIVSI 294
>pdb|2XH0|A Chain A, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n Q167k D321r Mutant Of Yeast
Enolase 1
pdb|2XH0|B Chain B, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n Q167k D321r Mutant Of Yeast
Enolase 1
pdb|2XH0|C Chain C, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n Q167k D321r Mutant Of Yeast
Enolase 1
pdb|2XH0|D Chain D, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n Q167k D321r Mutant Of Yeast
Enolase 1
Length = 443
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 35 GPCGPRLDAACIPLVKIADTVYSSPSKAKSPTGLSCSAAVKTKKIIYDLAETDDF----- 89
G P + A L I D + ++ K GL C+++ K YDL DF
Sbjct: 212 GGVAPNIQTAEEALDLIVDAIKAAGHDGKIKIGLDCASSEFFKDGKYDL----DFKNPNS 267
Query: 90 DREEIPTYEEVAKLYPMETLRRPVVLI 116
D+ + T ++A LY R P+V I
Sbjct: 268 DKSKWLTGPQLADLYHSLMKRYPIVSI 294
>pdb|2XH7|A Chain A, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The D321a Mutant Of Yeast Enolase 1
pdb|2XH7|B Chain B, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The D321a Mutant Of Yeast Enolase 1
Length = 443
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 35 GPCGPRLDAACIPLVKIADTVYSSPSKAKSPTGLSCSAAVKTKKIIYDLAETDDF----- 89
G P + A L I D + ++ K GL C+++ K YDL DF
Sbjct: 212 GGVAPNIQTAEEALDLIVDAIKAAGHDGKIKIGLDCASSEFFKDGKYDL----DFKNPNS 267
Query: 90 DREEIPTYEEVAKLYPMETLRRPVVLI 116
D+ + T ++A LY R P+V I
Sbjct: 268 DKSKWLTGPQLADLYHSLMKRYPIVSI 294
>pdb|2XH4|A Chain A, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39a D321a Mutant Of Yeast Enolase 1
pdb|2XH4|B Chain B, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39a D321a Mutant Of Yeast Enolase 1
pdb|2XH4|C Chain C, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39a D321a Mutant Of Yeast Enolase 1
pdb|2XH4|D Chain D, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39a D321a Mutant Of Yeast Enolase 1
Length = 443
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 35 GPCGPRLDAACIPLVKIADTVYSSPSKAKSPTGLSCSAAVKTKKIIYDLAETDDF----- 89
G P + A L I D + ++ K GL C+++ K YDL DF
Sbjct: 212 GGVAPNIQTAEEALDLIVDAIKAAGHDGKIKIGLDCASSEFFKDGKYDL----DFKNPNS 267
Query: 90 DREEIPTYEEVAKLYPMETLRRPVVLI 116
D+ + T ++A LY R P+V I
Sbjct: 268 DKSKWLTGPQLADLYHSLMKRYPIVSI 294
>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing
Monooxygenase From Photorhabdus Luminescens Subsp.
Laumondii Tto1 (Target Psi-012791)
Length = 412
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
Query: 121 VGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETM-TSLISAGKMIEF 179
+GR+ L L AL P F TP + PK P ++ F+S ++ + E
Sbjct: 187 IGRARLTPALTALLPQNFRDGTPNSIVPKSP------DWLFISXWRAPVNIHVEASLAEI 240
Query: 180 GEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLV 225
+ +Y ++DS+ + + L QS + P+ LV
Sbjct: 241 DNFIVWVYVAATDSLPDNITDFSAEALCDLVQSRXISWDPSLHTLV 286
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,057,075
Number of Sequences: 62578
Number of extensions: 332283
Number of successful extensions: 972
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 932
Number of HSP's gapped (non-prelim): 50
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)