Query psy14166
Match_columns 264
No_of_seqs 283 out of 1886
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 21:08:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0609|consensus 100.0 6.5E-53 1.4E-57 402.7 17.3 218 1-259 268-485 (542)
2 COG0194 Gmk Guanylate kinase [ 100.0 6.3E-37 1.4E-41 261.9 15.2 134 109-245 3-136 (191)
3 PF00625 Guanylate_kin: Guanyl 100.0 9.2E-37 2E-41 260.9 14.4 132 110-241 2-133 (183)
4 PRK14737 gmk guanylate kinase; 100.0 3.5E-36 7.7E-41 259.5 16.9 133 109-242 3-136 (186)
5 smart00072 GuKc Guanylate kina 100.0 3E-34 6.5E-39 245.9 16.2 132 110-241 2-133 (184)
6 PLN02772 guanylate kinase 100.0 4.7E-34 1E-38 269.4 15.5 150 95-245 118-269 (398)
7 PRK14738 gmk guanylate kinase; 100.0 9.2E-30 2E-34 222.3 16.7 134 107-241 10-143 (206)
8 cd00071 GMPK Guanosine monopho 100.0 1.1E-28 2.4E-33 202.8 14.4 120 112-231 1-120 (137)
9 KOG0707|consensus 99.9 8.7E-28 1.9E-32 211.3 9.4 134 109-242 36-169 (231)
10 TIGR03263 guanyl_kin guanylate 99.9 1.3E-24 2.8E-29 184.0 16.2 130 110-240 1-130 (180)
11 PRK00300 gmk guanylate kinase; 99.9 2.7E-24 5.9E-29 185.8 16.2 132 109-241 4-135 (205)
12 KOG0708|consensus 99.8 2.3E-19 5E-24 166.7 10.4 136 86-240 165-300 (359)
13 TIGR02322 phosphon_PhnN phosph 99.8 1.9E-17 4.2E-22 140.2 14.1 125 110-239 1-127 (179)
14 PRK10078 ribose 1,5-bisphospho 99.7 1.1E-17 2.4E-22 143.4 11.5 126 110-240 2-128 (186)
15 COG3709 Uncharacterized compon 99.7 1E-15 2.2E-20 128.8 12.4 136 110-251 5-142 (192)
16 PRK08356 hypothetical protein; 99.5 1.3E-13 2.9E-18 119.0 7.5 120 111-238 6-130 (195)
17 PRK00091 miaA tRNA delta(2)-is 99.3 1.9E-12 4.1E-17 120.0 7.3 114 110-239 4-126 (307)
18 cd00227 CPT Chloramphenicol (C 99.0 5.1E-10 1.1E-14 94.9 6.1 115 110-239 2-127 (175)
19 TIGR00174 miaA tRNA isopenteny 98.9 7.1E-10 1.5E-14 102.0 4.5 97 112-218 1-106 (287)
20 PRK00098 GTPase RsgA; Reviewed 98.8 4.3E-09 9.3E-14 97.1 4.7 94 109-203 163-277 (298)
21 PLN02840 tRNA dimethylallyltra 98.7 8.4E-09 1.8E-13 99.2 2.7 100 109-218 20-128 (421)
22 PF13671 AAA_33: AAA domain; P 98.6 4.9E-08 1.1E-12 78.9 5.9 103 112-238 1-113 (143)
23 KOG3354|consensus 98.5 8.3E-07 1.8E-11 74.9 10.0 109 111-239 13-134 (191)
24 PRK06762 hypothetical protein; 98.5 1.1E-06 2.3E-11 73.4 10.3 101 111-237 3-111 (166)
25 PRK00698 tmk thymidylate kinas 98.5 4E-07 8.7E-12 78.0 6.9 87 110-207 3-94 (205)
26 TIGR01313 therm_gnt_kin carboh 98.4 1.9E-06 4.1E-11 71.7 9.4 106 113-238 1-109 (163)
27 PLN02165 adenylate isopentenyl 98.4 7.5E-07 1.6E-11 83.5 6.8 99 109-217 42-150 (334)
28 PLN02748 tRNA dimethylallyltra 98.4 1.8E-07 3.8E-12 91.4 2.6 99 109-217 21-128 (468)
29 PRK14729 miaA tRNA delta(2)-is 98.4 1.8E-07 3.8E-12 86.7 2.5 95 110-218 4-110 (300)
30 PHA02530 pseT polynucleotide k 98.4 1.7E-06 3.8E-11 78.8 8.7 105 111-238 3-118 (300)
31 KOG3580|consensus 98.3 1.8E-06 3.9E-11 85.2 9.1 117 90-243 613-729 (1027)
32 COG3265 GntK Gluconate kinase 98.3 2.5E-06 5.4E-11 71.4 8.7 103 116-238 1-106 (161)
33 TIGR03574 selen_PSTK L-seryl-t 98.3 2E-06 4.4E-11 76.9 7.5 104 112-238 1-111 (249)
34 PF03193 DUF258: Protein of un 98.3 5.9E-07 1.3E-11 76.2 3.4 94 110-204 35-149 (161)
35 PRK00889 adenylylsulfate kinas 98.3 4.3E-06 9.3E-11 70.5 8.6 111 109-239 3-116 (175)
36 cd01672 TMPK Thymidine monopho 98.2 3.5E-06 7.7E-11 71.2 5.7 25 111-135 1-25 (200)
37 COG1162 Predicted GTPases [Gen 98.1 1.3E-06 2.8E-11 80.7 3.1 90 109-204 163-278 (301)
38 TIGR00235 udk uridine kinase. 98.1 4.6E-06 9.9E-11 72.6 6.4 27 109-135 5-31 (207)
39 TIGR00455 apsK adenylylsulfate 98.1 1.3E-05 2.7E-10 68.3 8.9 120 96-238 7-131 (184)
40 cd02021 GntK Gluconate kinase 98.1 1.3E-05 2.7E-10 65.7 8.5 23 112-134 1-23 (150)
41 cd02027 APSK Adenosine 5'-phos 98.1 1.6E-05 3.4E-10 66.0 8.9 107 112-238 1-112 (149)
42 PF07931 CPT: Chloramphenicol 98.1 1.1E-05 2.5E-10 69.1 8.3 113 110-245 1-131 (174)
43 COG0703 AroK Shikimate kinase 98.1 8.8E-06 1.9E-10 69.7 7.4 25 111-135 3-27 (172)
44 PRK03846 adenylylsulfate kinas 98.1 3.5E-05 7.7E-10 66.6 11.3 38 94-134 11-48 (198)
45 PRK07261 topology modulation p 98.1 1.8E-05 4E-10 67.1 9.1 23 112-134 2-24 (171)
46 KOG1384|consensus 98.1 7.3E-06 1.6E-10 76.3 7.0 113 110-232 7-148 (348)
47 PRK09825 idnK D-gluconate kina 98.0 4.5E-05 9.8E-10 65.2 9.9 26 110-135 3-28 (176)
48 PRK06217 hypothetical protein; 98.0 1.6E-05 3.5E-10 67.8 7.1 23 112-134 3-25 (183)
49 PRK05537 bifunctional sulfate 98.0 2.3E-05 5.1E-10 78.5 9.2 120 99-239 380-508 (568)
50 PRK08118 topology modulation p 98.0 5.9E-05 1.3E-09 63.9 10.1 24 111-134 2-25 (167)
51 PRK08233 hypothetical protein; 98.0 5.1E-05 1.1E-09 63.6 9.5 26 110-135 3-28 (182)
52 COG0324 MiaA tRNA delta(2)-iso 98.0 4.1E-06 8.9E-11 77.8 2.7 98 110-217 3-109 (308)
53 PRK06696 uridine kinase; Valid 98.0 9E-06 1.9E-10 71.6 4.7 27 109-135 21-47 (223)
54 TIGR01360 aden_kin_iso1 adenyl 98.0 1.1E-05 2.3E-10 68.1 4.9 25 110-134 3-27 (188)
55 PRK13946 shikimate kinase; Pro 98.0 3.6E-05 7.7E-10 65.9 8.3 26 109-134 9-34 (184)
56 PRK00131 aroK shikimate kinase 97.9 3.6E-05 7.8E-10 63.8 7.8 26 110-135 4-29 (175)
57 COG4619 ABC-type uncharacteriz 97.9 1.7E-05 3.7E-10 68.2 5.7 111 109-232 28-161 (223)
58 cd00464 SK Shikimate kinase (S 97.9 4.3E-05 9.2E-10 62.4 7.9 24 112-135 1-24 (154)
59 PRK13949 shikimate kinase; Pro 97.9 4.1E-05 8.8E-10 65.0 8.0 24 111-134 2-25 (169)
60 PRK14530 adenylate kinase; Pro 97.9 3.8E-05 8.1E-10 67.2 8.0 26 110-135 3-28 (215)
61 PRK04040 adenylate kinase; Pro 97.9 6.3E-05 1.4E-09 65.0 8.7 25 111-135 3-27 (188)
62 PRK14532 adenylate kinase; Pro 97.9 4E-05 8.7E-10 65.2 7.4 24 112-135 2-25 (188)
63 TIGR02868 CydC thiol reductant 97.9 1.4E-05 3.1E-10 78.6 5.2 78 109-200 360-446 (529)
64 TIGR00157 ribosome small subun 97.9 5.2E-06 1.1E-10 74.6 1.8 88 110-203 120-232 (245)
65 TIGR01663 PNK-3'Pase polynucle 97.8 8.9E-05 1.9E-09 73.7 10.0 89 109-238 368-463 (526)
66 PF08433 KTI12: Chromatin asso 97.8 3.1E-05 6.6E-10 70.8 6.3 106 111-238 2-114 (270)
67 PRK13947 shikimate kinase; Pro 97.8 4E-05 8.7E-10 64.0 6.5 24 112-135 3-26 (171)
68 PRK06547 hypothetical protein; 97.8 5.9E-05 1.3E-09 64.4 7.4 26 109-134 14-39 (172)
69 PRK05541 adenylylsulfate kinas 97.8 5.4E-05 1.2E-09 63.9 7.1 27 109-135 6-32 (176)
70 PRK03839 putative kinase; Prov 97.8 9.7E-05 2.1E-09 62.5 8.6 23 112-134 2-24 (180)
71 COG1116 TauB ABC-type nitrate/ 97.8 2.2E-05 4.8E-10 70.7 4.8 28 109-136 28-55 (248)
72 cd02024 NRK1 Nicotinamide ribo 97.8 5.7E-05 1.2E-09 65.5 6.8 24 112-135 1-24 (187)
73 COG1132 MdlB ABC-type multidru 97.8 3.1E-05 6.8E-10 77.0 5.9 78 109-199 354-440 (567)
74 PRK13948 shikimate kinase; Pro 97.8 9.3E-05 2E-09 63.8 8.0 26 109-134 9-34 (182)
75 PRK05057 aroK shikimate kinase 97.8 0.00025 5.5E-09 60.2 10.5 24 111-134 5-28 (172)
76 COG0563 Adk Adenylate kinase a 97.8 3.7E-05 8E-10 66.1 5.3 111 112-238 2-122 (178)
77 PRK14527 adenylate kinase; Pro 97.8 8.4E-05 1.8E-09 63.7 7.5 26 109-134 5-30 (191)
78 TIGR01359 UMP_CMP_kin_fam UMP- 97.8 0.00011 2.3E-09 62.1 8.0 24 112-135 1-24 (183)
79 PLN02200 adenylate kinase fami 97.8 0.00017 3.7E-09 64.4 9.6 44 91-135 25-68 (234)
80 PRK12288 GTPase RsgA; Reviewed 97.8 5.7E-06 1.2E-10 78.2 0.1 87 111-203 206-318 (347)
81 COG3839 MalK ABC-type sugar tr 97.8 2.2E-05 4.9E-10 73.8 4.0 59 109-170 28-90 (338)
82 TIGR03797 NHPM_micro_ABC2 NHPM 97.8 3.6E-05 7.8E-10 78.4 5.7 79 109-200 478-564 (686)
83 PRK06761 hypothetical protein; 97.7 0.00031 6.7E-09 64.7 11.0 114 111-239 4-123 (282)
84 PRK12339 2-phosphoglycerate ki 97.7 0.00014 3.1E-09 63.4 8.4 25 110-134 3-27 (197)
85 COG4988 CydD ABC-type transpor 97.7 5.2E-05 1.1E-09 75.1 6.3 79 109-200 346-433 (559)
86 COG1136 SalX ABC-type antimicr 97.7 4.8E-05 1E-09 67.8 5.4 26 109-134 30-55 (226)
87 PF01583 APS_kinase: Adenylyls 97.7 2.5E-05 5.4E-10 65.9 3.4 109 110-239 2-116 (156)
88 PRK11176 lipid transporter ATP 97.7 5E-05 1.1E-09 75.6 5.9 78 109-199 368-455 (582)
89 PTZ00265 multidrug resistance 97.7 5.3E-05 1.1E-09 83.4 6.4 92 109-200 1193-1334(1466)
90 TIGR00958 3a01208 Conjugate Tr 97.7 4.8E-05 1E-09 78.0 5.5 78 109-199 506-592 (711)
91 KOG0058|consensus 97.7 2.5E-05 5.3E-10 79.1 3.3 70 109-191 493-568 (716)
92 PRK03731 aroL shikimate kinase 97.7 9.2E-05 2E-09 62.0 6.3 24 111-134 3-26 (171)
93 PRK11545 gntK gluconate kinase 97.7 0.00046 1E-08 58.1 10.6 20 116-135 1-20 (163)
94 PF06414 Zeta_toxin: Zeta toxi 97.7 0.00015 3.2E-09 62.7 7.5 108 109-232 14-131 (199)
95 PRK05480 uridine/cytidine kina 97.7 0.00013 2.8E-09 63.3 7.2 27 109-135 5-31 (209)
96 TIGR02173 cyt_kin_arch cytidyl 97.7 0.00013 2.7E-09 60.6 6.9 23 112-134 2-24 (171)
97 PRK11174 cysteine/glutathione 97.7 5.8E-05 1.3E-09 75.3 5.5 80 109-200 375-461 (588)
98 PLN02318 phosphoribulokinase/u 97.6 0.00019 4E-09 72.2 8.7 149 86-242 41-198 (656)
99 cd02023 UMPK Uridine monophosp 97.6 0.00013 2.7E-09 62.8 6.6 23 112-134 1-23 (198)
100 TIGR03796 NHPM_micro_ABC1 NHPM 97.6 5.5E-05 1.2E-09 77.2 5.1 78 109-199 504-590 (710)
101 COG3842 PotA ABC-type spermidi 97.6 3.5E-05 7.6E-10 72.9 3.3 59 109-170 30-92 (352)
102 cd02019 NK Nucleoside/nucleoti 97.6 0.00017 3.8E-09 52.1 6.3 23 112-134 1-23 (69)
103 PF13207 AAA_17: AAA domain; P 97.6 4.4E-05 9.5E-10 59.9 3.2 23 112-134 1-23 (121)
104 PRK04182 cytidylate kinase; Pr 97.6 0.00015 3.3E-09 60.5 6.6 23 112-134 2-24 (180)
105 PRK00625 shikimate kinase; Pro 97.6 0.0002 4.4E-09 61.2 7.4 23 112-134 2-24 (173)
106 PRK14531 adenylate kinase; Pro 97.6 0.00026 5.6E-09 60.4 8.0 24 111-134 3-26 (183)
107 TIGR01193 bacteriocin_ABC ABC- 97.6 6.2E-05 1.3E-09 76.9 4.7 78 109-199 499-586 (708)
108 COG3840 ThiQ ABC-type thiamine 97.6 7.7E-05 1.7E-09 64.9 4.5 42 109-150 24-69 (231)
109 COG2274 SunT ABC-type bacterio 97.6 4.4E-05 9.5E-10 78.3 3.5 111 109-232 498-637 (709)
110 COG1120 FepC ABC-type cobalami 97.6 7E-05 1.5E-09 68.1 4.4 27 109-135 27-53 (258)
111 TIGR01351 adk adenylate kinase 97.6 0.00013 2.7E-09 63.6 5.8 22 113-134 2-23 (210)
112 PLN02924 thymidylate kinase 97.6 0.0004 8.7E-09 61.6 9.1 118 109-238 15-151 (220)
113 PRK01184 hypothetical protein; 97.6 0.00054 1.2E-08 58.1 9.5 23 111-134 2-24 (184)
114 cd01854 YjeQ_engC YjeQ/EngC. 97.6 7E-05 1.5E-09 68.8 4.1 94 110-203 161-274 (287)
115 COG4639 Predicted kinase [Gene 97.5 0.00036 7.9E-09 59.0 7.8 100 111-237 3-112 (168)
116 PRK13657 cyclic beta-1,2-gluca 97.5 0.0001 2.2E-09 73.6 5.4 77 109-198 360-445 (588)
117 PRK09087 hypothetical protein; 97.5 0.00028 6E-09 62.7 7.6 122 96-242 32-164 (226)
118 TIGR03375 type_I_sec_LssB type 97.5 9E-05 2E-09 75.5 5.0 78 109-199 490-576 (694)
119 PRK10790 putative multidrug tr 97.5 0.0001 2.2E-09 73.7 5.3 78 109-199 366-451 (592)
120 PRK11160 cysteine/glutathione 97.5 0.00011 2.5E-09 73.4 5.5 79 109-200 365-452 (574)
121 TIGR02857 CydD thiol reductant 97.5 0.00013 2.9E-09 71.8 5.6 79 109-200 347-434 (529)
122 KOG1191|consensus 97.5 0.0001 2.2E-09 71.9 4.7 90 109-210 267-358 (531)
123 PRK05506 bifunctional sulfate 97.5 0.00019 4.1E-09 72.8 6.7 111 109-239 459-574 (632)
124 TIGR02203 MsbA_lipidA lipid A 97.5 0.00014 3.1E-09 72.0 5.6 78 109-199 357-444 (571)
125 TIGR02204 MsbA_rel ABC transpo 97.5 0.00014 3.1E-09 72.2 5.6 64 109-185 365-433 (576)
126 PF01926 MMR_HSR1: 50S ribosom 97.5 7.1E-05 1.5E-09 58.6 2.4 51 113-164 2-54 (116)
127 COG1126 GlnQ ABC-type polar am 97.4 0.0001 2.2E-09 65.5 3.4 27 109-135 27-53 (240)
128 COG1127 Ttg2A ABC-type transpo 97.4 0.0002 4.3E-09 64.5 5.3 110 109-232 33-173 (263)
129 TIGR00041 DTMP_kinase thymidyl 97.4 0.00069 1.5E-08 57.7 8.4 26 110-135 3-28 (195)
130 TIGR00554 panK_bact pantothena 97.4 0.00017 3.6E-09 66.7 4.8 25 109-133 61-85 (290)
131 COG0529 CysC Adenylylsulfate k 97.4 0.00065 1.4E-08 58.7 7.9 38 95-134 10-47 (197)
132 cd02028 UMPK_like Uridine mono 97.4 0.00032 6.8E-09 60.0 5.8 117 112-233 1-129 (179)
133 PRK00279 adk adenylate kinase; 97.4 0.00041 9E-09 60.6 6.5 24 112-135 2-25 (215)
134 cd01428 ADK Adenylate kinase ( 97.3 0.00094 2E-08 56.5 8.2 22 113-134 2-23 (194)
135 TIGR01526 nadR_NMN_Atrans nico 97.3 0.00056 1.2E-08 64.0 7.3 26 110-135 162-187 (325)
136 PRK10789 putative multidrug tr 97.3 0.00029 6.2E-09 70.4 5.6 27 109-135 340-366 (569)
137 COG0572 Udk Uridine kinase [Nu 97.3 0.00035 7.5E-09 62.0 5.3 126 109-238 7-144 (218)
138 PRK14529 adenylate kinase; Pro 97.3 0.0016 3.4E-08 58.1 9.3 110 112-238 2-121 (223)
139 COG4107 PhnK ABC-type phosphon 97.3 0.0014 3E-08 56.9 8.5 117 110-232 32-179 (258)
140 PRK14021 bifunctional shikimat 97.3 0.00073 1.6E-08 67.5 7.8 28 107-134 3-30 (542)
141 PRK12289 GTPase RsgA; Reviewed 97.3 0.00022 4.7E-09 67.6 3.9 44 110-154 172-222 (352)
142 PRK10522 multidrug transporter 97.3 0.00031 6.6E-09 69.8 4.9 28 109-136 348-375 (547)
143 COG0645 Predicted kinase [Gene 97.3 0.0027 5.9E-08 54.2 9.9 106 111-245 2-125 (170)
144 PTZ00088 adenylate kinase 1; P 97.3 0.0012 2.5E-08 59.0 8.0 23 112-134 8-30 (229)
145 PRK07667 uridine kinase; Provi 97.3 0.0008 1.7E-08 58.1 6.7 24 111-134 18-41 (193)
146 PLN02348 phosphoribulokinase 97.3 0.00097 2.1E-08 64.0 7.9 27 109-135 48-74 (395)
147 PRK08154 anaerobic benzoate ca 97.2 0.0017 3.8E-08 60.2 9.4 32 103-134 126-157 (309)
148 PF00005 ABC_tran: ABC transpo 97.2 0.00021 4.5E-09 57.3 2.8 27 109-135 10-36 (137)
149 COG1124 DppF ABC-type dipeptid 97.2 0.00047 1E-08 62.1 5.3 31 109-139 32-62 (252)
150 KOG0055|consensus 97.2 0.0002 4.3E-09 76.5 3.3 67 109-188 1015-1087(1228)
151 TIGR01846 type_I_sec_HlyB type 97.2 0.00039 8.4E-09 71.0 5.3 64 109-185 482-550 (694)
152 COG1125 OpuBA ABC-type proline 97.2 0.00075 1.6E-08 61.5 6.4 25 109-133 26-50 (309)
153 PRK13973 thymidylate kinase; P 97.2 0.0011 2.4E-08 58.0 7.3 26 110-135 3-28 (213)
154 cd00820 PEPCK_HprK Phosphoenol 97.2 0.00029 6.2E-09 55.9 3.2 23 109-131 14-36 (107)
155 smart00382 AAA ATPases associa 97.2 0.0004 8.7E-09 53.5 4.0 27 110-136 2-28 (148)
156 PRK13974 thymidylate kinase; P 97.2 0.0032 7E-08 55.0 10.2 27 110-136 3-29 (212)
157 TIGR00960 3a0501s02 Type II (G 97.2 0.00033 7.1E-09 60.9 3.9 27 109-135 28-54 (216)
158 cd01855 YqeH YqeH. YqeH is an 97.2 0.00031 6.8E-09 59.9 3.6 45 110-154 127-178 (190)
159 cd03225 ABC_cobalt_CbiO_domain 97.2 0.00033 7.1E-09 60.6 3.7 27 109-135 26-52 (211)
160 COG1102 Cmk Cytidylate kinase 97.2 0.0011 2.3E-08 56.6 6.6 98 112-232 2-101 (179)
161 cd03261 ABC_Org_Solvent_Resist 97.2 0.00035 7.5E-09 61.6 3.9 28 109-136 25-52 (235)
162 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.2 0.00034 7.3E-09 60.8 3.8 28 109-136 29-56 (218)
163 KOG0057|consensus 97.2 0.00017 3.7E-09 71.3 2.1 79 109-199 377-459 (591)
164 cd01130 VirB11-like_ATPase Typ 97.2 0.0017 3.6E-08 55.6 7.9 28 109-136 24-51 (186)
165 TIGR01166 cbiO cobalt transpor 97.2 0.00035 7.7E-09 59.6 3.8 27 109-135 17-43 (190)
166 PF00406 ADK: Adenylate kinase 97.2 0.0019 4.2E-08 53.0 7.9 106 115-238 1-118 (151)
167 cd03292 ABC_FtsE_transporter F 97.2 0.00037 8.1E-09 60.3 3.8 27 109-135 26-52 (214)
168 PF13238 AAA_18: AAA domain; P 97.2 0.00032 6.9E-09 54.9 3.0 22 113-134 1-22 (129)
169 cd02026 PRK Phosphoribulokinas 97.2 0.00013 2.8E-09 66.7 0.9 24 112-135 1-24 (273)
170 cd03269 ABC_putative_ATPase Th 97.2 0.0004 8.7E-09 60.1 3.9 27 109-135 25-51 (210)
171 COG1618 Predicted nucleotide k 97.2 0.0018 3.8E-08 55.3 7.6 124 111-236 6-167 (179)
172 cd03262 ABC_HisP_GlnQ_permease 97.2 0.00039 8.4E-09 60.1 3.8 28 109-136 25-52 (213)
173 cd03226 ABC_cobalt_CbiO_domain 97.2 0.0004 8.7E-09 59.9 3.9 27 109-135 25-51 (205)
174 cd03224 ABC_TM1139_LivF_branch 97.2 0.00035 7.7E-09 60.8 3.5 27 109-135 25-51 (222)
175 PLN02674 adenylate kinase 97.2 0.0011 2.3E-08 59.9 6.7 26 110-135 31-56 (244)
176 cd03263 ABC_subfamily_A The AB 97.2 0.00039 8.5E-09 60.5 3.8 27 109-135 27-53 (220)
177 TIGR02211 LolD_lipo_ex lipopro 97.1 0.00042 9E-09 60.4 3.9 28 109-136 30-57 (221)
178 COG3638 ABC-type phosphate/pho 97.1 0.00068 1.5E-08 61.0 5.2 27 109-135 29-55 (258)
179 cd03238 ABC_UvrA The excision 97.1 0.00039 8.5E-09 59.6 3.6 24 109-132 20-43 (176)
180 TIGR02315 ABC_phnC phosphonate 97.1 0.0004 8.6E-09 61.4 3.8 27 109-135 27-53 (243)
181 TIGR01842 type_I_sec_PrtD type 97.1 0.0006 1.3E-08 67.6 5.4 27 109-135 343-369 (544)
182 TIGR01192 chvA glucan exporter 97.1 0.00062 1.3E-08 68.3 5.5 27 109-135 360-386 (585)
183 TIGR01194 cyc_pep_trnsptr cycl 97.1 0.00059 1.3E-08 68.0 5.4 27 109-135 367-393 (555)
184 cd03258 ABC_MetN_methionine_tr 97.1 0.00041 8.9E-09 61.0 3.8 28 109-136 30-57 (233)
185 cd03222 ABC_RNaseL_inhibitor T 97.1 0.0004 8.8E-09 59.5 3.6 27 109-135 24-50 (177)
186 TIGR02673 FtsE cell division A 97.1 0.00042 9.1E-09 60.1 3.8 27 109-135 27-53 (214)
187 cd01895 EngA2 EngA2 subfamily. 97.1 0.0018 3.8E-08 52.6 7.3 56 111-167 3-60 (174)
188 PRK13808 adenylate kinase; Pro 97.1 0.0016 3.5E-08 61.3 7.9 24 112-135 2-25 (333)
189 cd03259 ABC_Carb_Solutes_like 97.1 0.00045 9.7E-09 59.9 3.9 27 109-135 25-51 (213)
190 PRK05416 glmZ(sRNA)-inactivati 97.1 0.0041 8.9E-08 57.4 10.4 23 110-132 6-28 (288)
191 COG1160 Predicted GTPases [Gen 97.1 0.0011 2.4E-08 64.3 6.8 105 111-228 4-119 (444)
192 cd03256 ABC_PhnC_transporter A 97.1 0.00045 9.7E-09 60.9 3.9 27 109-135 26-52 (241)
193 cd03257 ABC_NikE_OppD_transpor 97.1 0.00045 9.7E-09 60.3 3.8 28 109-136 30-57 (228)
194 COG1936 Predicted nucleotide k 97.1 0.0046 1E-07 53.1 9.8 21 112-132 2-22 (180)
195 PLN02199 shikimate kinase 97.1 0.0025 5.4E-08 59.2 8.8 26 109-134 101-126 (303)
196 cd03265 ABC_DrrA DrrA is the A 97.1 0.00047 1E-08 60.1 3.9 27 109-135 25-51 (220)
197 KOG0055|consensus 97.1 0.00032 6.9E-09 75.0 3.3 70 109-191 378-453 (1228)
198 cd03235 ABC_Metallic_Cations A 97.1 0.00044 9.6E-09 59.9 3.7 27 109-135 24-50 (213)
199 PRK15177 Vi polysaccharide exp 97.1 0.00048 1E-08 60.3 3.8 27 109-135 12-38 (213)
200 COG1117 PstB ABC-type phosphat 97.1 0.0004 8.7E-09 61.8 3.2 26 109-134 32-57 (253)
201 cd03219 ABC_Mj1267_LivG_branch 97.1 0.00044 9.5E-09 60.8 3.5 27 109-135 25-51 (236)
202 PRK05439 pantothenate kinase; 97.1 0.001 2.2E-08 62.1 6.1 26 109-134 85-110 (311)
203 PHA00729 NTP-binding motif con 97.1 0.0042 9.2E-08 55.5 9.7 55 111-171 18-73 (226)
204 cd03293 ABC_NrtD_SsuB_transpor 97.1 0.00053 1.2E-08 59.8 3.9 27 109-135 29-55 (220)
205 TIGR03608 L_ocin_972_ABC putat 97.1 0.00054 1.2E-08 58.9 3.8 28 109-136 23-50 (206)
206 cd03260 ABC_PstB_phosphate_tra 97.1 0.00054 1.2E-08 60.0 3.8 26 109-134 25-50 (227)
207 cd03229 ABC_Class3 This class 97.1 0.00057 1.2E-08 57.9 3.8 27 109-135 25-51 (178)
208 cd03301 ABC_MalK_N The N-termi 97.1 0.00055 1.2E-08 59.3 3.8 27 109-135 25-51 (213)
209 cd03216 ABC_Carb_Monos_I This 97.1 0.00058 1.3E-08 57.2 3.8 27 109-135 25-51 (163)
210 COG0486 ThdF Predicted GTPase 97.1 0.0005 1.1E-08 66.8 3.8 58 109-167 216-275 (454)
211 PLN03232 ABC transporter C fam 97.1 0.00076 1.6E-08 74.6 5.7 78 109-199 1261-1346(1495)
212 PRK10584 putative ABC transpor 97.0 0.00058 1.2E-08 59.9 3.8 27 109-135 35-61 (228)
213 cd03296 ABC_CysA_sulfate_impor 97.0 0.00057 1.2E-08 60.5 3.8 27 109-135 27-53 (239)
214 cd03266 ABC_NatA_sodium_export 97.0 0.00056 1.2E-08 59.4 3.7 27 109-135 30-56 (218)
215 PRK11248 tauB taurine transpor 97.0 0.00059 1.3E-08 61.3 3.9 27 109-135 26-52 (255)
216 PRK08099 bifunctional DNA-bind 97.0 0.0013 2.8E-08 63.4 6.5 26 109-134 218-243 (399)
217 cd03230 ABC_DR_subfamily_A Thi 97.0 0.00064 1.4E-08 57.3 3.9 27 109-135 25-51 (173)
218 PRK14526 adenylate kinase; Pro 97.0 0.0028 6.2E-08 55.8 8.1 23 113-135 3-25 (211)
219 PRK11629 lolD lipoprotein tran 97.0 0.00059 1.3E-08 60.2 3.8 27 109-135 34-60 (233)
220 cd03268 ABC_BcrA_bacitracin_re 97.0 0.00059 1.3E-08 59.0 3.7 27 109-135 25-51 (208)
221 PRK10908 cell division protein 97.0 0.0006 1.3E-08 59.6 3.8 28 109-136 27-54 (222)
222 cd03254 ABCC_Glucan_exporter_l 97.0 0.0006 1.3E-08 59.7 3.8 28 109-136 28-55 (229)
223 PRK13541 cytochrome c biogenes 97.0 0.00065 1.4E-08 58.3 3.9 28 109-136 25-52 (195)
224 cd03218 ABC_YhbG The ABC trans 97.0 0.00059 1.3E-08 59.9 3.7 27 109-135 25-51 (232)
225 TIGR03864 PQQ_ABC_ATP ABC tran 97.0 0.00064 1.4E-08 60.0 3.9 27 109-135 26-52 (236)
226 cd01858 NGP_1 NGP-1. Autoanti 97.0 0.00054 1.2E-08 56.7 3.2 38 110-148 102-139 (157)
227 TIGR03410 urea_trans_UrtE urea 97.0 0.0006 1.3E-08 59.8 3.7 27 109-135 25-51 (230)
228 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.00067 1.5E-08 55.8 3.6 27 109-135 25-51 (144)
229 PRK13539 cytochrome c biogenes 97.0 0.00068 1.5E-08 58.8 3.8 28 109-136 27-54 (207)
230 TIGR01189 ccmA heme ABC export 97.0 0.00071 1.5E-08 58.1 3.9 27 109-135 25-51 (198)
231 cd03246 ABCC_Protease_Secretio 97.0 0.00074 1.6E-08 56.9 3.9 27 109-135 27-53 (173)
232 PRK10247 putative ABC transpor 97.0 0.00071 1.5E-08 59.5 3.9 27 109-135 32-58 (225)
233 PRK10895 lipopolysaccharide AB 97.0 0.00066 1.4E-08 60.0 3.8 27 109-135 28-54 (241)
234 cd03298 ABC_ThiQ_thiamine_tran 97.0 0.0007 1.5E-08 58.6 3.8 27 109-135 23-49 (211)
235 PRK13540 cytochrome c biogenes 97.0 0.00071 1.5E-08 58.3 3.8 27 109-135 26-52 (200)
236 cd03295 ABC_OpuCA_Osmoprotecti 97.0 0.00069 1.5E-08 60.1 3.8 27 109-135 26-52 (242)
237 cd03264 ABC_drug_resistance_li 97.0 0.00062 1.3E-08 58.9 3.5 26 109-135 25-50 (211)
238 PF13555 AAA_29: P-loop contai 97.0 0.00086 1.9E-08 48.1 3.6 24 110-133 23-46 (62)
239 PRK11124 artP arginine transpo 97.0 0.0007 1.5E-08 59.9 3.8 27 109-135 27-53 (242)
240 PRK11264 putative amino-acid A 97.0 0.0007 1.5E-08 60.1 3.8 27 109-135 28-54 (250)
241 TIGR01184 ntrCD nitrate transp 97.0 0.00076 1.7E-08 59.5 3.9 28 109-136 10-37 (230)
242 cd03215 ABC_Carb_Monos_II This 97.0 0.00073 1.6E-08 57.4 3.7 27 109-135 25-51 (182)
243 COG1118 CysA ABC-type sulfate/ 97.0 0.00074 1.6E-08 62.8 3.9 58 109-170 27-92 (345)
244 cd03245 ABCC_bacteriocin_expor 97.0 0.00076 1.6E-08 58.7 3.8 27 109-135 29-55 (220)
245 KOG0734|consensus 97.0 0.0014 3E-08 65.1 5.8 71 96-202 315-393 (752)
246 cd03234 ABCG_White The White s 97.0 0.00071 1.5E-08 59.3 3.6 27 109-135 32-58 (226)
247 cd03214 ABC_Iron-Siderophores_ 97.0 0.00085 1.8E-08 56.9 3.9 27 109-135 24-50 (180)
248 PRK13538 cytochrome c biogenes 97.0 0.00078 1.7E-08 58.2 3.8 28 109-136 26-53 (204)
249 PRK11247 ssuB aliphatic sulfon 97.0 0.00076 1.6E-08 60.9 3.8 27 109-135 37-63 (257)
250 PRK09270 nucleoside triphospha 96.9 0.00078 1.7E-08 59.5 3.8 29 108-136 31-59 (229)
251 cd03247 ABCC_cytochrome_bd The 96.9 0.00083 1.8E-08 56.8 3.8 27 109-135 27-53 (178)
252 cd03237 ABC_RNaseL_inhibitor_d 96.9 0.0008 1.7E-08 60.4 3.9 27 109-135 24-50 (246)
253 TIGR02770 nickel_nikD nickel i 96.9 0.00077 1.7E-08 59.3 3.7 27 109-135 11-37 (230)
254 PRK14250 phosphate ABC transpo 96.9 0.00079 1.7E-08 59.8 3.8 27 109-135 28-54 (241)
255 KOG0056|consensus 96.9 0.00059 1.3E-08 67.1 3.2 72 109-191 563-638 (790)
256 TIGR02323 CP_lyasePhnK phospho 96.9 0.00081 1.8E-08 59.9 3.9 28 109-136 28-55 (253)
257 cd03223 ABCD_peroxisomal_ALDP 96.9 0.00085 1.8E-08 56.4 3.8 27 109-135 26-52 (166)
258 PRK14267 phosphate ABC transpo 96.9 0.00079 1.7E-08 60.0 3.8 27 109-135 29-55 (253)
259 TIGR00436 era GTP-binding prot 96.9 0.00074 1.6E-08 61.1 3.6 38 112-150 2-39 (270)
260 TIGR00957 MRP_assoc_pro multi 96.9 0.0012 2.6E-08 73.2 5.9 79 109-200 1311-1397(1522)
261 cd03233 ABC_PDR_domain1 The pl 96.9 0.00073 1.6E-08 58.5 3.4 27 109-135 32-58 (202)
262 TIGR02324 CP_lyasePhnL phospho 96.9 0.00083 1.8E-08 58.7 3.8 27 109-135 33-59 (224)
263 PRK11300 livG leucine/isoleuci 96.9 0.00079 1.7E-08 60.0 3.6 28 109-136 30-57 (255)
264 PRK09493 glnQ glutamine ABC tr 96.9 0.00085 1.8E-08 59.3 3.8 27 109-135 26-52 (240)
265 TIGR00972 3a0107s01c2 phosphat 96.9 0.00086 1.9E-08 59.6 3.8 27 109-135 26-52 (247)
266 cd03252 ABCC_Hemolysin The ABC 96.9 0.00084 1.8E-08 59.1 3.7 27 109-135 27-53 (237)
267 PRK06620 hypothetical protein; 96.9 0.005 1.1E-07 54.3 8.6 48 194-241 106-157 (214)
268 cd03251 ABCC_MsbA MsbA is an e 96.9 0.00086 1.9E-08 58.9 3.8 27 109-135 27-53 (234)
269 cd01849 YlqF_related_GTPase Yl 96.9 0.00089 1.9E-08 55.4 3.6 42 109-151 99-140 (155)
270 TIGR03005 ectoine_ehuA ectoine 96.9 0.0009 1.9E-08 59.7 3.9 27 109-135 25-51 (252)
271 cd03294 ABC_Pro_Gly_Bertaine T 96.9 0.00091 2E-08 60.5 4.0 28 109-136 49-76 (269)
272 PRK14247 phosphate ABC transpo 96.9 0.00088 1.9E-08 59.6 3.8 27 109-135 28-54 (250)
273 PRK13645 cbiO cobalt transport 96.9 0.00085 1.8E-08 61.3 3.8 28 109-136 36-63 (289)
274 PTZ00243 ABC transporter; Prov 96.9 0.0012 2.7E-08 73.2 5.7 79 109-200 1335-1421(1560)
275 PRK14242 phosphate transporter 96.9 0.00088 1.9E-08 59.7 3.8 26 109-134 31-56 (253)
276 PLN03130 ABC transporter C fam 96.9 0.0013 2.7E-08 73.4 5.7 78 109-199 1264-1349(1622)
277 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.9 0.00089 1.9E-08 59.0 3.7 27 109-135 28-54 (238)
278 PRK13638 cbiO cobalt transport 96.9 0.00084 1.8E-08 60.7 3.6 27 109-135 26-52 (271)
279 TIGR01978 sufC FeS assembly AT 96.9 0.00082 1.8E-08 59.3 3.5 26 109-134 25-50 (243)
280 PRK14273 phosphate ABC transpo 96.9 0.0009 1.9E-08 59.7 3.8 27 109-135 32-58 (254)
281 PRK10575 iron-hydroxamate tran 96.9 0.00084 1.8E-08 60.5 3.6 27 109-135 36-62 (265)
282 PRK10771 thiQ thiamine transpo 96.9 0.0009 2E-08 58.9 3.7 27 109-135 24-50 (232)
283 PRK15056 manganese/iron transp 96.9 0.00089 1.9E-08 60.6 3.7 27 109-135 32-58 (272)
284 PRK11701 phnK phosphonate C-P 96.9 0.00097 2.1E-08 59.7 3.9 27 109-135 31-57 (258)
285 PRK13543 cytochrome c biogenes 96.9 0.00095 2.1E-08 58.2 3.8 28 109-136 36-63 (214)
286 COG1160 Predicted GTPases [Gen 96.9 0.00061 1.3E-08 66.0 2.7 61 110-171 178-240 (444)
287 cd03231 ABC_CcmA_heme_exporter 96.9 0.001 2.2E-08 57.4 3.9 28 109-136 25-52 (201)
288 cd03253 ABCC_ATM1_transporter 96.9 0.00096 2.1E-08 58.7 3.8 28 109-136 26-53 (236)
289 cd03232 ABC_PDR_domain2 The pl 96.9 0.00095 2.1E-08 57.3 3.7 26 109-134 32-57 (192)
290 cd03228 ABCC_MRP_Like The MRP 96.9 0.0011 2.3E-08 55.9 3.9 27 109-135 27-53 (171)
291 TIGR01277 thiQ thiamine ABC tr 96.9 0.001 2.2E-08 57.8 3.9 28 109-136 23-50 (213)
292 cd03244 ABCC_MRP_domain2 Domai 96.9 0.001 2.2E-08 58.0 3.8 27 109-135 29-55 (221)
293 PF00485 PRK: Phosphoribulokin 96.9 0.00084 1.8E-08 57.7 3.3 24 112-135 1-24 (194)
294 cd03369 ABCC_NFT1 Domain 2 of 96.9 0.001 2.2E-08 57.5 3.8 27 109-135 33-59 (207)
295 cd03236 ABC_RNaseL_inhibitor_d 96.9 0.001 2.2E-08 60.1 3.9 28 109-136 25-52 (255)
296 PRK13648 cbiO cobalt transport 96.9 0.00096 2.1E-08 60.3 3.8 27 109-135 34-60 (269)
297 PRK14274 phosphate ABC transpo 96.9 0.00097 2.1E-08 59.7 3.8 26 109-134 37-62 (259)
298 TIGR03740 galliderm_ABC gallid 96.9 0.001 2.2E-08 58.2 3.8 28 109-136 25-52 (223)
299 TIGR03771 anch_rpt_ABC anchore 96.9 0.00099 2.1E-08 58.5 3.7 27 109-135 5-31 (223)
300 PRK14241 phosphate transporter 96.9 0.00099 2.1E-08 59.7 3.8 26 109-134 29-54 (258)
301 cd03267 ABC_NatA_like Similar 96.9 0.001 2.3E-08 58.9 3.9 27 109-135 46-72 (236)
302 PRK13547 hmuV hemin importer A 96.9 0.00097 2.1E-08 60.7 3.7 27 109-135 26-52 (272)
303 PRK13649 cbiO cobalt transport 96.9 0.001 2.2E-08 60.4 3.8 27 109-135 32-58 (280)
304 TIGR02769 nickel_nikE nickel i 96.9 0.00099 2.1E-08 60.0 3.8 28 109-136 36-63 (265)
305 PRK11831 putative ABC transpor 96.9 0.00098 2.1E-08 60.3 3.7 27 109-135 32-58 (269)
306 PRK10619 histidine/lysine/argi 96.9 0.001 2.2E-08 59.6 3.8 28 109-136 30-57 (257)
307 PRK15112 antimicrobial peptide 96.8 0.0011 2.3E-08 59.9 3.9 28 109-136 38-65 (267)
308 PRK14262 phosphate ABC transpo 96.8 0.001 2.2E-08 59.1 3.7 27 109-135 28-54 (250)
309 PRK13632 cbiO cobalt transport 96.8 0.001 2.2E-08 60.2 3.8 28 109-136 34-61 (271)
310 COG3911 Predicted ATPase [Gene 96.8 0.0018 4E-08 54.6 4.9 60 109-171 8-68 (183)
311 cd03248 ABCC_TAP TAP, the Tran 96.8 0.0011 2.4E-08 58.0 3.8 28 109-136 39-66 (226)
312 TIGR01188 drrA daunorubicin re 96.8 0.0011 2.3E-08 61.1 3.9 27 109-135 18-44 (302)
313 cd03290 ABCC_SUR1_N The SUR do 96.8 0.0011 2.4E-08 57.8 3.8 27 109-135 26-52 (218)
314 COG4181 Predicted ABC-type tra 96.8 0.0015 3.2E-08 56.6 4.4 26 109-134 35-60 (228)
315 cd03250 ABCC_MRP_domain1 Domai 96.8 0.0011 2.4E-08 57.1 3.8 27 109-135 30-56 (204)
316 PF00004 AAA: ATPase family as 96.8 0.001 2.2E-08 52.2 3.2 22 113-134 1-22 (132)
317 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.8 0.0011 2.3E-08 58.4 3.7 27 109-135 47-73 (224)
318 PRK14235 phosphate transporter 96.8 0.0011 2.4E-08 59.8 3.9 27 109-135 44-70 (267)
319 PRK14259 phosphate ABC transpo 96.8 0.0011 2.3E-08 60.1 3.7 27 109-135 38-64 (269)
320 PRK12338 hypothetical protein; 96.8 0.0026 5.7E-08 59.6 6.4 26 110-135 4-29 (319)
321 PRK10744 pstB phosphate transp 96.8 0.0011 2.3E-08 59.6 3.7 26 109-134 38-63 (260)
322 COG4525 TauB ABC-type taurine 96.8 0.0016 3.5E-08 57.4 4.6 37 95-134 19-55 (259)
323 COG2884 FtsE Predicted ATPase 96.8 0.0014 2.9E-08 57.5 4.1 26 109-134 27-52 (223)
324 TIGR03411 urea_trans_UrtD urea 96.8 0.0011 2.4E-08 58.6 3.7 27 109-135 27-53 (242)
325 PRK11614 livF leucine/isoleuci 96.8 0.001 2.2E-08 58.6 3.5 27 109-135 30-56 (237)
326 cd01852 AIG1 AIG1 (avrRpt2-ind 96.8 0.0014 2.9E-08 56.3 4.1 54 112-167 2-59 (196)
327 PRK14237 phosphate transporter 96.8 0.0012 2.6E-08 59.6 3.9 27 109-135 45-71 (267)
328 PTZ00301 uridine kinase; Provi 96.8 0.00099 2.1E-08 58.7 3.3 23 111-133 4-26 (210)
329 PRK13548 hmuV hemin importer A 96.8 0.0011 2.5E-08 59.5 3.8 27 109-135 27-53 (258)
330 PF08477 Miro: Miro-like prote 96.8 0.0011 2.5E-08 51.4 3.3 23 113-135 2-24 (119)
331 PRK14249 phosphate ABC transpo 96.8 0.0012 2.6E-08 58.9 3.8 27 109-135 29-55 (251)
332 PRK10253 iron-enterobactin tra 96.8 0.0011 2.4E-08 59.7 3.7 28 109-136 32-59 (265)
333 TIGR01288 nodI ATP-binding ABC 96.8 0.0011 2.5E-08 61.0 3.8 27 109-135 29-55 (303)
334 TIGR01186 proV glycine betaine 96.8 0.0011 2.4E-08 63.0 3.8 28 109-136 18-45 (363)
335 PRK14256 phosphate ABC transpo 96.8 0.0012 2.6E-08 58.8 3.8 26 109-134 29-54 (252)
336 PRK15453 phosphoribulokinase; 96.8 0.002 4.4E-08 59.4 5.3 26 109-134 4-29 (290)
337 PRK14253 phosphate ABC transpo 96.8 0.0012 2.7E-08 58.6 3.8 27 109-135 28-54 (249)
338 PRK09984 phosphonate/organopho 96.8 0.0012 2.5E-08 59.3 3.7 27 109-135 29-55 (262)
339 PRK00081 coaE dephospho-CoA ki 96.8 0.0011 2.4E-08 57.3 3.4 22 111-132 3-24 (194)
340 PRK11650 ugpC glycerol-3-phosp 96.8 0.0012 2.6E-08 62.5 3.9 28 109-136 29-56 (356)
341 COG4608 AppF ABC-type oligopep 96.8 0.002 4.3E-08 58.8 5.1 27 109-135 38-64 (268)
342 PRK10418 nikD nickel transport 96.8 0.0012 2.7E-08 59.0 3.8 27 109-135 28-54 (254)
343 PRK09544 znuC high-affinity zi 96.8 0.0013 2.8E-08 59.1 3.9 27 109-135 29-55 (251)
344 PRK14251 phosphate ABC transpo 96.8 0.0013 2.8E-08 58.5 3.8 27 109-135 29-55 (251)
345 PRK14240 phosphate transporter 96.8 0.0013 2.8E-08 58.6 3.7 26 109-134 28-53 (250)
346 PRK13651 cobalt transporter AT 96.8 0.0012 2.7E-08 61.1 3.8 28 109-136 32-59 (305)
347 PRK13647 cbiO cobalt transport 96.8 0.0013 2.7E-08 59.8 3.8 27 109-135 30-56 (274)
348 PRK13641 cbiO cobalt transport 96.8 0.0013 2.8E-08 60.1 3.8 28 109-136 32-59 (287)
349 PRK14248 phosphate ABC transpo 96.8 0.0013 2.8E-08 59.3 3.8 26 109-134 46-71 (268)
350 PRK11432 fbpC ferric transport 96.8 0.0013 2.7E-08 62.3 3.8 28 109-136 31-58 (351)
351 cd03300 ABC_PotA_N PotA is an 96.8 0.0014 3E-08 57.8 3.8 28 109-136 25-52 (232)
352 PRK14268 phosphate ABC transpo 96.8 0.0013 2.9E-08 58.9 3.8 27 109-135 37-63 (258)
353 COG1121 ZnuC ABC-type Mn/Zn tr 96.8 0.0014 3.1E-08 59.4 4.0 27 109-135 29-55 (254)
354 cd03297 ABC_ModC_molybdenum_tr 96.8 0.0013 2.7E-08 57.2 3.5 25 111-135 24-48 (214)
355 PRK11153 metN DL-methionine tr 96.8 0.0013 2.9E-08 61.8 3.9 27 109-135 30-56 (343)
356 cd03273 ABC_SMC2_euk Eukaryoti 96.8 0.0012 2.5E-08 59.1 3.4 37 96-134 13-49 (251)
357 PRK14239 phosphate transporter 96.7 0.0012 2.7E-08 58.6 3.5 25 109-133 30-54 (252)
358 PRK14255 phosphate ABC transpo 96.7 0.0014 3E-08 58.4 3.8 26 109-134 30-55 (252)
359 PRK09536 btuD corrinoid ABC tr 96.7 0.0014 3.1E-08 63.1 4.2 27 109-135 28-54 (402)
360 PRK09452 potA putrescine/sperm 96.7 0.0013 2.8E-08 62.8 3.8 28 109-136 39-66 (375)
361 PRK04220 2-phosphoglycerate ki 96.7 0.017 3.8E-07 53.7 11.1 26 110-135 92-117 (301)
362 COG4088 Predicted nucleotide k 96.7 0.0064 1.4E-07 54.0 7.8 26 111-136 2-27 (261)
363 KOG3079|consensus 96.7 0.0072 1.6E-07 52.5 7.9 121 108-244 6-135 (195)
364 PRK11231 fecE iron-dicitrate t 96.7 0.0014 3E-08 58.6 3.8 27 109-135 27-53 (255)
365 PRK14270 phosphate ABC transpo 96.7 0.0015 3.2E-08 58.3 3.9 26 109-134 29-54 (251)
366 PRK15093 antimicrobial peptide 96.7 0.0014 3E-08 61.4 3.8 27 109-135 32-58 (330)
367 TIGR03598 GTPase_YsxC ribosome 96.7 0.0014 2.9E-08 55.3 3.5 25 109-133 17-41 (179)
368 PRK10851 sulfate/thiosulfate t 96.7 0.0014 2.9E-08 62.1 3.9 28 109-136 27-54 (353)
369 cd00009 AAA The AAA+ (ATPases 96.7 0.0016 3.4E-08 50.9 3.6 25 110-134 19-43 (151)
370 COG4136 ABC-type uncharacteriz 96.7 0.0016 3.6E-08 55.3 3.8 121 109-236 27-165 (213)
371 PRK14272 phosphate ABC transpo 96.7 0.0015 3.2E-08 58.1 3.8 27 109-135 29-55 (252)
372 PRK11000 maltose/maltodextrin 96.7 0.0014 2.9E-08 62.4 3.8 27 109-135 28-54 (369)
373 PRK13646 cbiO cobalt transport 96.7 0.0014 3.1E-08 59.8 3.8 28 109-136 32-59 (286)
374 PRK13635 cbiO cobalt transport 96.7 0.0014 3.1E-08 59.7 3.8 28 109-136 32-59 (279)
375 PRK13639 cbiO cobalt transport 96.7 0.0014 3.1E-08 59.5 3.7 28 109-136 27-54 (275)
376 TIGR02142 modC_ABC molybdenum 96.7 0.0014 3E-08 61.9 3.8 27 109-135 22-48 (354)
377 cd01897 NOG NOG1 is a nucleola 96.7 0.0015 3.3E-08 53.5 3.6 53 111-165 1-55 (168)
378 TIGR03265 PhnT2 putative 2-ami 96.7 0.0014 3E-08 62.0 3.8 28 109-136 29-56 (353)
379 PRK03695 vitamin B12-transport 96.7 0.0014 2.9E-08 58.6 3.5 28 109-136 21-48 (248)
380 COG4618 ArpD ABC-type protease 96.7 0.0013 2.9E-08 64.7 3.7 50 109-169 361-410 (580)
381 PRK10419 nikE nickel transport 96.7 0.0014 3.1E-08 59.2 3.7 27 109-135 37-63 (268)
382 PRK14261 phosphate ABC transpo 96.7 0.0015 3.2E-08 58.3 3.7 26 109-134 31-56 (253)
383 PRK00454 engB GTP-binding prot 96.7 0.0018 4E-08 54.5 4.2 25 109-133 23-47 (196)
384 PRK12298 obgE GTPase CgtA; Rev 96.7 0.0012 2.7E-08 63.3 3.4 51 112-164 161-214 (390)
385 PRK13640 cbiO cobalt transport 96.7 0.0015 3.2E-08 59.6 3.8 27 109-135 32-58 (282)
386 PRK11144 modC molybdate transp 96.7 0.0014 3.1E-08 61.8 3.8 27 109-135 23-49 (352)
387 PRK14244 phosphate ABC transpo 96.7 0.0016 3.4E-08 58.1 3.9 26 109-134 30-55 (251)
388 cd03213 ABCG_EPDR ABCG transpo 96.7 0.0015 3.3E-08 56.2 3.7 26 109-134 34-59 (194)
389 PRK14260 phosphate ABC transpo 96.7 0.0016 3.4E-08 58.5 3.9 27 109-135 32-58 (259)
390 TIGR02982 heterocyst_DevA ABC 96.7 0.0016 3.5E-08 56.9 3.9 27 109-135 30-56 (220)
391 TIGR03873 F420-0_ABC_ATP propo 96.7 0.0014 3.1E-08 58.5 3.6 27 109-135 26-52 (256)
392 COG0396 sufC Cysteine desulfur 96.7 0.0014 2.9E-08 58.8 3.4 25 109-133 29-53 (251)
393 COG0125 Tmk Thymidylate kinase 96.7 0.0024 5.2E-08 56.3 4.9 41 109-151 2-42 (208)
394 COG0410 LivF ABC-type branched 96.7 0.0011 2.4E-08 59.2 2.8 62 109-170 28-93 (237)
395 PRK11022 dppD dipeptide transp 96.7 0.0015 3.2E-08 61.1 3.7 27 109-135 32-58 (326)
396 TIGR00968 3a0106s01 sulfate AB 96.7 0.0016 3.5E-08 57.6 3.8 28 109-136 25-52 (237)
397 PRK13650 cbiO cobalt transport 96.7 0.0016 3.4E-08 59.3 3.8 27 109-135 32-58 (279)
398 cd04159 Arl10_like Arl10-like 96.7 0.0012 2.7E-08 52.5 2.8 21 113-133 2-22 (159)
399 PRK14238 phosphate transporter 96.7 0.0016 3.6E-08 58.9 3.9 26 109-134 49-74 (271)
400 PRK00089 era GTPase Era; Revie 96.7 0.0011 2.4E-08 60.3 2.8 52 111-163 6-59 (292)
401 PRK13637 cbiO cobalt transport 96.7 0.0017 3.6E-08 59.5 3.9 27 109-135 32-58 (287)
402 cd01898 Obg Obg subfamily. Th 96.7 0.0018 4E-08 53.0 3.8 38 113-152 3-40 (170)
403 cd04155 Arl3 Arl3 subfamily. 96.7 0.0018 3.8E-08 53.5 3.7 24 110-133 14-37 (173)
404 cd01876 YihA_EngB The YihA (En 96.7 0.0013 2.8E-08 52.9 2.8 20 113-132 2-21 (170)
405 cd02025 PanK Pantothenate kina 96.7 0.0013 2.8E-08 58.2 3.0 23 112-134 1-23 (220)
406 PF10662 PduV-EutP: Ethanolami 96.7 0.0015 3.2E-08 54.5 3.1 24 111-134 2-25 (143)
407 PRK13546 teichoic acids export 96.7 0.0017 3.7E-08 58.9 3.8 28 109-136 49-76 (264)
408 cd04164 trmE TrmE (MnmE, ThdF, 96.7 0.0015 3.3E-08 52.3 3.1 24 111-134 2-25 (157)
409 PRK13652 cbiO cobalt transport 96.7 0.0017 3.6E-08 59.0 3.8 27 109-135 29-55 (277)
410 PRK14258 phosphate ABC transpo 96.7 0.0017 3.7E-08 58.4 3.8 27 109-135 32-58 (261)
411 cd03217 ABC_FeS_Assembly ABC-t 96.7 0.0016 3.5E-08 56.2 3.5 25 109-133 25-49 (200)
412 PRK14269 phosphate ABC transpo 96.7 0.0018 3.8E-08 57.6 3.8 26 109-134 27-52 (246)
413 PRK11308 dppF dipeptide transp 96.7 0.0017 3.7E-08 60.8 3.8 28 109-136 40-67 (327)
414 PF07728 AAA_5: AAA domain (dy 96.7 0.0017 3.6E-08 52.4 3.3 24 112-135 1-24 (139)
415 PRK13644 cbiO cobalt transport 96.7 0.0018 3.8E-08 58.9 3.8 27 109-135 27-53 (274)
416 PRK13633 cobalt transporter AT 96.6 0.0017 3.7E-08 59.1 3.7 28 109-136 35-62 (280)
417 cd01881 Obg_like The Obg-like 96.6 0.0013 2.8E-08 54.0 2.7 51 115-167 1-54 (176)
418 PRK14243 phosphate transporter 96.6 0.0018 3.9E-08 58.4 3.7 26 109-134 35-60 (264)
419 PRK14245 phosphate ABC transpo 96.6 0.0018 3.8E-08 57.7 3.6 25 109-133 28-52 (250)
420 PRK14271 phosphate ABC transpo 96.6 0.0018 4E-08 58.8 3.8 27 109-135 46-72 (276)
421 PRK09580 sufC cysteine desulfu 96.6 0.0016 3.4E-08 57.7 3.3 26 109-134 26-51 (248)
422 KOG1969|consensus 96.6 0.012 2.5E-07 60.4 9.7 124 109-242 325-479 (877)
423 cd03291 ABCC_CFTR1 The CFTR su 96.6 0.0019 4.2E-08 59.2 3.9 28 109-136 62-89 (282)
424 CHL00131 ycf16 sulfate ABC tra 96.6 0.0016 3.4E-08 57.9 3.3 25 109-133 32-56 (252)
425 PRK13643 cbiO cobalt transport 96.6 0.0018 3.9E-08 59.3 3.7 28 109-136 31-58 (288)
426 PRK14254 phosphate ABC transpo 96.6 0.0019 4.1E-08 59.1 3.8 27 109-135 64-90 (285)
427 PRK13631 cbiO cobalt transport 96.6 0.0019 4.1E-08 60.3 3.8 28 109-136 51-78 (320)
428 COG1159 Era GTPase [General fu 96.6 0.0012 2.7E-08 60.9 2.5 53 111-164 7-61 (298)
429 cd02020 CMPK Cytidine monophos 96.6 0.0017 3.7E-08 52.2 3.1 23 112-134 1-23 (147)
430 COG1131 CcmA ABC-type multidru 96.6 0.002 4.3E-08 59.5 3.8 27 109-135 30-56 (293)
431 PF00437 T2SE: Type II/IV secr 96.6 0.005 1.1E-07 55.4 6.4 106 109-218 126-243 (270)
432 PRK13976 thymidylate kinase; P 96.6 0.0011 2.4E-08 58.3 2.1 40 111-150 1-40 (209)
433 TIGR03258 PhnT 2-aminoethylpho 96.6 0.002 4.3E-08 61.3 3.9 28 109-136 30-57 (362)
434 PRK14265 phosphate ABC transpo 96.6 0.002 4.3E-08 58.5 3.8 26 109-134 45-70 (274)
435 PRK11607 potG putrescine trans 96.6 0.0019 4.1E-08 61.7 3.8 28 109-136 44-71 (377)
436 cd01896 DRG The developmentall 96.6 0.0018 3.9E-08 57.6 3.4 50 112-163 2-53 (233)
437 PRK14088 dnaA chromosomal repl 96.6 0.021 4.5E-07 55.7 11.0 24 110-133 130-153 (440)
438 PRK09435 membrane ATPase/prote 96.6 0.0079 1.7E-07 56.7 7.8 39 96-134 42-80 (332)
439 PRK14236 phosphate transporter 96.6 0.0021 4.6E-08 58.2 3.9 27 109-135 50-76 (272)
440 cd00267 ABC_ATPase ABC (ATP-bi 96.6 0.0023 4.9E-08 52.9 3.8 27 109-135 24-50 (157)
441 TIGR02314 ABC_MetN D-methionin 96.6 0.0021 4.5E-08 60.7 3.9 27 109-135 30-56 (343)
442 PRK09473 oppD oligopeptide tra 96.6 0.0019 4.1E-08 60.5 3.6 27 109-135 41-67 (330)
443 PRK14252 phosphate ABC transpo 96.6 0.0021 4.7E-08 57.8 3.8 26 109-134 41-66 (265)
444 cd03288 ABCC_SUR2 The SUR doma 96.6 0.0022 4.8E-08 57.5 3.8 27 109-135 46-72 (257)
445 PLN02459 probable adenylate ki 96.6 0.0081 1.8E-07 54.8 7.5 111 111-239 30-149 (261)
446 COG1072 CoaA Panthothenate kin 96.6 0.0042 9.2E-08 56.9 5.7 127 109-239 81-227 (283)
447 COG4175 ProV ABC-type proline/ 96.6 0.0034 7.5E-08 58.8 5.1 48 109-169 53-102 (386)
448 PRK13536 nodulation factor exp 96.6 0.0022 4.8E-08 60.4 4.0 27 109-135 66-92 (340)
449 PRK13642 cbiO cobalt transport 96.6 0.0022 4.7E-08 58.3 3.8 28 109-136 32-59 (277)
450 PRK13634 cbiO cobalt transport 96.6 0.0022 4.7E-08 58.8 3.7 28 109-136 32-59 (290)
451 COG0218 Predicted GTPase [Gene 96.5 0.00015 3.3E-09 63.4 -3.7 26 109-134 23-48 (200)
452 COG4987 CydC ABC-type transpor 96.5 0.0036 7.8E-08 62.0 5.4 27 109-135 363-389 (573)
453 PRK15079 oligopeptide ABC tran 96.5 0.0022 4.8E-08 60.1 3.8 28 109-136 46-73 (331)
454 PRK10070 glycine betaine trans 96.5 0.002 4.4E-08 62.1 3.6 27 109-135 53-79 (400)
455 PRK14263 phosphate ABC transpo 96.5 0.0023 5E-08 57.7 3.8 27 109-135 33-59 (261)
456 PRK14275 phosphate ABC transpo 96.5 0.0021 4.6E-08 58.7 3.6 25 109-133 64-88 (286)
457 COG2019 AdkA Archaeal adenylat 96.5 0.0092 2E-07 51.2 7.1 24 111-134 5-28 (189)
458 TIGR03415 ABC_choXWV_ATP choli 96.5 0.0022 4.7E-08 61.5 3.7 28 109-136 49-76 (382)
459 cd03283 ABC_MutS-like MutS-lik 96.5 0.0023 4.9E-08 55.7 3.5 24 110-133 25-48 (199)
460 PRK10751 molybdopterin-guanine 96.5 0.0022 4.8E-08 55.0 3.4 26 110-135 6-31 (173)
461 PRK13636 cbiO cobalt transport 96.5 0.0024 5.2E-08 58.3 3.8 27 109-135 31-57 (283)
462 PRK13537 nodulation ABC transp 96.5 0.0025 5.4E-08 59.0 3.9 27 109-135 32-58 (306)
463 cd04163 Era Era subfamily. Er 96.5 0.0022 4.8E-08 51.3 3.2 23 111-133 4-26 (168)
464 PRK14246 phosphate ABC transpo 96.5 0.0025 5.4E-08 57.4 3.7 27 109-135 35-61 (257)
465 TIGR03522 GldA_ABC_ATP gliding 96.5 0.0023 5.1E-08 58.9 3.7 27 109-135 27-53 (301)
466 smart00763 AAA_PrkA PrkA AAA d 96.5 0.0023 5E-08 60.8 3.6 26 109-134 77-102 (361)
467 PRK13975 thymidylate kinase; P 96.5 0.0024 5.3E-08 54.3 3.4 25 111-135 3-27 (196)
468 cd03299 ABC_ModC_like Archeal 96.5 0.0026 5.7E-08 56.2 3.7 27 109-135 24-50 (235)
469 PRK10938 putative molybdenum t 96.5 0.0023 5.1E-08 62.6 3.7 27 109-135 28-54 (490)
470 PRK13549 xylose transporter AT 96.5 0.0022 4.8E-08 63.1 3.6 27 109-135 30-56 (506)
471 PRK15134 microcin C ABC transp 96.5 0.0024 5.1E-08 63.2 3.8 27 109-135 34-60 (529)
472 PRK10762 D-ribose transporter 96.5 0.0023 5.1E-08 62.8 3.7 27 109-135 29-55 (501)
473 COG3172 NadR Predicted ATPase/ 96.5 0.0018 3.9E-08 55.2 2.4 27 109-135 7-33 (187)
474 cd01131 PilT Pilus retraction 96.5 0.0023 5.1E-08 55.4 3.2 24 112-135 3-26 (198)
475 COG0411 LivG ABC-type branched 96.5 0.00097 2.1E-08 60.1 0.9 28 109-136 29-56 (250)
476 PRK14266 phosphate ABC transpo 96.5 0.0027 5.9E-08 56.4 3.7 25 109-133 28-52 (250)
477 CHL00181 cbbX CbbX; Provisiona 96.5 0.011 2.4E-07 54.4 7.8 25 109-133 58-82 (287)
478 PF13401 AAA_22: AAA domain; P 96.5 0.0023 5E-08 50.5 2.9 26 109-134 3-28 (131)
479 cd01129 PulE-GspE PulE/GspE Th 96.4 0.018 4E-07 52.3 9.1 104 110-218 80-195 (264)
480 PF00448 SRP54: SRP54-type pro 96.4 0.0024 5.2E-08 55.6 3.2 25 110-134 1-25 (196)
481 COG4586 ABC-type uncharacteriz 96.4 0.006 1.3E-07 56.2 5.8 110 109-233 49-185 (325)
482 cd01853 Toc34_like Toc34-like 96.4 0.002 4.4E-08 58.1 2.7 58 109-167 30-89 (249)
483 PRK15064 ABC transporter ATP-b 96.4 0.0026 5.7E-08 62.9 3.8 27 109-135 26-52 (530)
484 cd01894 EngA1 EngA1 subfamily. 96.4 0.0015 3.3E-08 52.3 1.7 35 114-149 1-35 (157)
485 TIGR02881 spore_V_K stage V sp 96.4 0.0089 1.9E-07 53.8 6.8 24 110-133 42-65 (261)
486 PRK03003 GTP-binding protein D 96.4 0.0058 1.3E-07 59.9 6.0 56 110-166 211-268 (472)
487 cd03272 ABC_SMC3_euk Eukaryoti 96.4 0.0028 6.2E-08 55.9 3.4 22 110-131 23-44 (243)
488 cd04138 H_N_K_Ras_like H-Ras/N 96.4 0.0028 6.1E-08 51.0 3.1 22 112-133 3-24 (162)
489 COG4559 ABC-type hemin transpo 96.4 0.0028 6.1E-08 56.5 3.3 26 109-134 26-51 (259)
490 cd02030 NDUO42 NADH:Ubiquinone 96.4 0.0096 2.1E-07 52.3 6.7 23 112-134 1-23 (219)
491 PRK15439 autoinducer 2 ABC tra 96.4 0.0031 6.6E-08 62.3 3.9 27 109-135 36-62 (510)
492 PRK14264 phosphate ABC transpo 96.4 0.0032 7E-08 58.1 3.8 26 109-134 70-95 (305)
493 PRK09700 D-allose transporter 96.4 0.0027 5.9E-08 62.5 3.5 27 109-135 30-56 (510)
494 TIGR00362 DnaA chromosomal rep 96.4 0.031 6.6E-07 53.5 10.6 38 96-133 121-159 (405)
495 PRK04213 GTP-binding protein; 96.4 0.0043 9.4E-08 52.8 4.3 25 110-134 9-33 (201)
496 cd03289 ABCC_CFTR2 The CFTR su 96.4 0.0034 7.3E-08 57.4 3.8 27 109-135 29-55 (275)
497 PF05729 NACHT: NACHT domain 96.4 0.0032 6.9E-08 51.2 3.3 23 111-133 1-23 (166)
498 PF13191 AAA_16: AAA ATPase do 96.4 0.0026 5.7E-08 52.9 2.9 26 109-134 23-48 (185)
499 PRK02496 adk adenylate kinase; 96.4 0.0028 6E-08 53.7 3.0 23 112-134 3-25 (184)
500 cd03278 ABC_SMC_barmotin Barmo 96.4 0.003 6.6E-08 54.7 3.3 23 112-134 24-46 (197)
No 1
>KOG0609|consensus
Probab=100.00 E-value=6.5e-53 Score=402.73 Aligned_cols=218 Identities=46% Similarity=0.713 Sum_probs=189.8
Q ss_pred CcccccCChhhHHHHHHHhhhhcccCCCCCCCCCCCCCCCCccccccccccccccCCCCCCcCCCCCCccccchhhhhhh
Q psy14166 1 MRAGIIPSKALQERKILHERSLMENGDTNSNPSLGPCGPRLDAACIPLVKIADTVYSSPSKAKSPTGLSCSAAVKTKKII 80 (264)
Q Consensus 1 ~~aGliPs~~~qe~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (264)
.+||||||+.|||||.++.+...+..+.. ...+++++++|+ ++.+
T Consensus 268 ~~AGLiPS~~~qerr~a~~~~~~~~~~~~----------------------------~~c~~l~kkkk~-------~~~~ 312 (542)
T KOG0609|consen 268 GLAGLIPSKELQERRVACLRREVSKEPEK----------------------------TRCQRLSKKKKK-------KKSK 312 (542)
T ss_pred cccccccCHHHHHHHHHHHhhhcccCCcC----------------------------chhcccchhhhh-------hhhh
Confidence 37999999999999999988765422110 111222222221 1344
Q ss_pred hcccCCCCCCCCCCcchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCccee
Q psy14166 81 YDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYH 160 (264)
Q Consensus 81 ~~~~~~~~~~~~~~~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~ 160 (264)
|..++++.||..++++||||++|+++. .|++||+||+|||.++|+++|+..+|++|+.+||||||+||++|.+|++||
T Consensus 313 y~~~~~~~~d~~~~~tYEEV~~~~~~~--rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~ 390 (542)
T KOG0609|consen 313 YLGKHSAVFDQPELLTYEEVVRYPPFR--RRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYH 390 (542)
T ss_pred hhhhcchhhhccccccHHHHhhhcccc--cceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccce
Confidence 888899999999999999999999964 499999999999999999999999999999999999999999999999999
Q ss_pred ecCHHHHHHHHHcCCcceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHH
Q psy14166 161 FVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESR 240 (264)
Q Consensus 161 fvs~~~f~~~i~~~~flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r 240 (264)
|||+++|+++|.+|+|+|||+|.+|+|||+.++|+.++++||+||||+.|++++.||+++|+||||||+||+++.++++|
T Consensus 391 FVSk~~~e~dI~~~~~lE~GEy~~nlYGTs~dsVr~v~~~gKicvLdv~Pqalk~lRt~Ef~PyVIFI~pP~~~~~r~~r 470 (542)
T KOG0609|consen 391 FVSKEEMEADIRAGKFLEYGEYEGNLYGTSLDSVRNVIASGKICVLDVEPQALKVLRTAEFKPYVIFIAPPSLEELRALR 470 (542)
T ss_pred eeehHHHhhhhhcCCceecCcchhccccchHHHHHHHHHhCCEEEEecCHHHhhhhhhhcccceEEEecCCCchhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCcccccCccccc
Q psy14166 241 ITAFARSPFDQYNSRAFTL 259 (264)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~ 259 (264)
+.+.... ..++.|+|
T Consensus 471 ~~~~~~~----~~~~~~~d 485 (542)
T KOG0609|consen 471 KVAVMST----IVAKQFTD 485 (542)
T ss_pred hhccccc----cccccCCH
Confidence 9987544 23455553
No 2
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.3e-37 Score=261.92 Aligned_cols=134 Identities=33% Similarity=0.569 Sum_probs=126.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG 188 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG 188 (264)
.|.++||+||||||||||.++|.+.+ .+.++|++|||+||+||++|++|||+|.++|++++.+++||||.+|.||+||
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG 80 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG 80 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence 46899999999999999999999987 5889999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHHhhcc
Q psy14166 189 TSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRITAFA 245 (264)
Q Consensus 189 t~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~~~~~ 245 (264)
|+...|++++++|+.||||++.||++++|........|||.|||+++|+++ ...++
T Consensus 81 T~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~R-L~~Rg 136 (191)
T COG0194 81 TSREPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERR-LKGRG 136 (191)
T ss_pred CcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHH-HHccC
Confidence 999999999999999999999999999999888899999999999999874 44444
No 3
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=100.00 E-value=9.2e-37 Score=260.86 Aligned_cols=132 Identities=46% Similarity=0.852 Sum_probs=124.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGT 189 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt 189 (264)
+|+|||+|||||||+||+++|++.+|+.|+.+++||||+|+++|.+|++|||||+++|++++.+|+|+||++|.|++|||
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt 81 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT 81 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHH
Q psy14166 190 SSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRI 241 (264)
Q Consensus 190 ~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~ 241 (264)
+.++|..++++|++|||++++++++.|+...++|++|||.|||.+.|+++.+
T Consensus 82 ~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~ 133 (183)
T PF00625_consen 82 SKSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLR 133 (183)
T ss_dssp EHHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHH
T ss_pred ccchhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999987643
No 4
>PRK14737 gmk guanylate kinase; Provisional
Probab=100.00 E-value=3.5e-36 Score=259.54 Aligned_cols=133 Identities=27% Similarity=0.504 Sum_probs=124.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG 188 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG 188 (264)
++++|||+|||||||+||++.|++.+|+ +..+++||||+||+||.+|+||||||+++|+.++.+|.|+||++|.||+||
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~-~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG 81 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPD-FLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG 81 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCc-cccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence 4689999999999999999999999886 567899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCc-EEEEEeCCChHHHHHHHHh
Q psy14166 189 TSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKP-LVLFIAPPPFAALKESRIT 242 (264)
Q Consensus 189 t~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p-~vIfI~pps~e~l~~~r~~ 242 (264)
|+.++|++++++|++||+|+++++++.|+.....+ ++|||.|||.+.+++++..
T Consensus 82 t~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~ 136 (186)
T PRK14737 82 TPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIH 136 (186)
T ss_pred CcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHh
Confidence 99999999999999999999999999999875555 8999999999999876544
No 5
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=100.00 E-value=3e-34 Score=245.89 Aligned_cols=132 Identities=43% Similarity=0.770 Sum_probs=127.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGT 189 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt 189 (264)
+++|||+|||||||+||++.|++.+|+.|..+++||||+++++|.+|.+|+|+|+++|+.++.+|.|+|++++.||+|||
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 48999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHH
Q psy14166 190 SSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRI 241 (264)
Q Consensus 190 ~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~ 241 (264)
+.++|.+++++|++||||++++++..|+...+.|++|||.|||.++|+++..
T Consensus 82 ~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~ 133 (184)
T smart00072 82 SKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLR 133 (184)
T ss_pred CHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988654
No 6
>PLN02772 guanylate kinase
Probab=100.00 E-value=4.7e-34 Score=269.39 Aligned_cols=150 Identities=31% Similarity=0.536 Sum_probs=138.8
Q ss_pred cchHhhhhcCC-CCC-CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHH
Q psy14166 95 PTYEEVAKLYP-MET-LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLIS 172 (264)
Q Consensus 95 ~~Yeev~~~~~-~~~-~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~ 172 (264)
+.=|||+++++ .+. ..+++||+|||||||+||+++|++.+|..|+++++||||+||++|.+|++|+|+++++|+.++.
T Consensus 118 ~~~~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~ 197 (398)
T PLN02772 118 LLGTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIK 197 (398)
T ss_pred cccceeeecccCCCCCCCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHH
Confidence 34689999886 333 6789999999999999999999999988899999999999999999999999999999999999
Q ss_pred cCCcceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHHhhcc
Q psy14166 173 AGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRITAFA 245 (264)
Q Consensus 173 ~~~flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~~~~~ 245 (264)
+|.|+||+++.||+|||+.++|+.++++|++|||++++++++.|+...+.+++|||.|||+++|+++ ...+.
T Consensus 198 ~g~FlE~~e~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~l~~v~IFI~PPSlEeLe~R-L~~RG 269 (398)
T PLN02772 198 DGKFLEFASVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGARSVRASSLEAIFIFICPPSMEELEKR-LRARG 269 (398)
T ss_pred hCccceeeeecCccccccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhcCCeEEEEEeCCCHHHHHHH-HHhcC
Confidence 9999999999999999999999999999999999999999999999888999999999999999874 43443
No 7
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.97 E-value=9.2e-30 Score=222.30 Aligned_cols=134 Identities=32% Similarity=0.547 Sum_probs=124.0
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCce
Q psy14166 107 ETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHL 186 (264)
Q Consensus 107 ~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~ 186 (264)
|..+++|||+||||||||||++.|.+..+ .|..+++||||+++.+|.+|.+|||+|.++|+.++.++.|+||+++.||+
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~-~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~ 88 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERKL-PFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNY 88 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcCC-cccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCce
Confidence 33668999999999999999999987765 58899999999999999999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHH
Q psy14166 187 YGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRI 241 (264)
Q Consensus 187 YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~ 241 (264)
|||+.++|..++++|++||++++++++..|+.....+.+||+.||+.++|+++..
T Consensus 89 YGt~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~~pd~~~if~~pps~e~l~~Rl~ 143 (206)
T PRK14738 89 YGVPKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVFIFLAPPSMDELTRRLE 143 (206)
T ss_pred ecCCHHHHHHHHHcCCcEEEEcCHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHH
Confidence 9999999999999999999999999999999877777999999999988877543
No 8
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.96 E-value=1.1e-28 Score=202.82 Aligned_cols=120 Identities=38% Similarity=0.672 Sum_probs=117.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCCH
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSS 191 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~~ 191 (264)
+|+|+||||||||||++.|++.++..|..+++||||+|+.+|.+|.+|+|++.++|.+++.++.|++++++.+|+||++.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~ 80 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK 80 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence 58999999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCC
Q psy14166 192 DSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPP 231 (264)
Q Consensus 192 ~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pp 231 (264)
+++.+++++|++||+++++++++.|+..+++|++|||.||
T Consensus 81 ~~i~~~~~~g~~~il~~~~~~~~~l~~~~~~~~~I~i~~~ 120 (137)
T cd00071 81 AAVEEALAEGKIVILEIDVQGARQVKKSYPDAVSIFILPP 120 (137)
T ss_pred HHHHHHHhCCCeEEEEecHHHHHHHHHcCCCeEEEEEECC
Confidence 9999999999999999999999999999999999999999
No 9
>KOG0707|consensus
Probab=99.95 E-value=8.7e-28 Score=211.31 Aligned_cols=134 Identities=37% Similarity=0.603 Sum_probs=128.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG 188 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG 188 (264)
..+++||.||+|+||+||+++|.+.+|..|+..|+||||.||.+|++|.+|||++.++|+.|+.++.|+|++.+.||+||
T Consensus 36 ~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yG 115 (231)
T KOG0707|consen 36 DFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYG 115 (231)
T ss_pred CCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCC
Confidence 44899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHHh
Q psy14166 189 TSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRIT 242 (264)
Q Consensus 189 t~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~~ 242 (264)
+++++++++...|++|++|++.++.+.++...+++.+||+.||+...++++.+.
T Consensus 116 tsi~av~~~~~~gk~~ildId~qg~~~i~~~~~~~i~i~~~pps~~~~e~rl~~ 169 (231)
T KOG0707|consen 116 TSIAAVQRLMLSGKVCILDIDLQGVQPIRATSLDAIYIFIKPPSIKILEERLRA 169 (231)
T ss_pred chHHHHHHHHhcCCcceeehhhcCceeeecCCCceEEEEecCCcchhHHHHhhc
Confidence 999999999999999999999999999999999999999999999888875443
No 10
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.93 E-value=1.3e-24 Score=183.99 Aligned_cols=130 Identities=34% Similarity=0.602 Sum_probs=121.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGT 189 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt 189 (264)
+++|+|+||||||||||++.|+..++. +...+++|||+|+.++.+|.+|+|++.++|..++.++.|++++.+.+++||+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~-~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 79 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPN-LKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGT 79 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCcc-ccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCC
Confidence 479999999999999999999998876 5678899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHH
Q psy14166 190 SSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESR 240 (264)
Q Consensus 190 ~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r 240 (264)
+.+.+.+++++|++||+|++++++..++...+.++.||+.+|+.+.++++.
T Consensus 80 ~~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl 130 (180)
T TIGR03263 80 PKSPVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELERRL 130 (180)
T ss_pred cHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCcEEEEEECCCHHHHHHHH
Confidence 999999999999999999999999999988888999999999988887643
No 11
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.92 E-value=2.7e-24 Score=185.78 Aligned_cols=132 Identities=33% Similarity=0.577 Sum_probs=123.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG 188 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG 188 (264)
.+++|+|+||||||||||++.|++.++ .|...+++|||+|+.||.+|.+|+|++.++|..++.++.|++++++.++.||
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~-~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 82 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP-NLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYG 82 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc-cceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCcccc
Confidence 468999999999999999999999987 6788899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHH
Q psy14166 189 TSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRI 241 (264)
Q Consensus 189 t~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~ 241 (264)
++...|..++++|++||+|+++++...++.....+++||+.+|+.+.++++..
T Consensus 83 ~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~ 135 (205)
T PRK00300 83 TPRSPVEEALAAGKDVLLEIDWQGARQVKKKMPDAVSIFILPPSLEELERRLR 135 (205)
T ss_pred CcHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHH
Confidence 99999999999999999999999999999877789999999999988877433
No 12
>KOG0708|consensus
Probab=99.80 E-value=2.3e-19 Score=166.74 Aligned_cols=136 Identities=29% Similarity=0.433 Sum_probs=124.2
Q ss_pred CCCCCCCCCcchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHH
Q psy14166 86 TDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHE 165 (264)
Q Consensus 86 ~~~~~~~~~~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~ 165 (264)
+...+...+++||-|.++... ..|+|+|+||. |.-|...|+..+|++|+.+++||+|+. ++
T Consensus 165 ~~~~~e~~~lsY~~V~~~~~~--~~RPVlilg~~---~d~l~~~Lv~e~~~kF~~C~~~t~~~~--------------~~ 225 (359)
T KOG0708|consen 165 NELGKELSLLSYELVERLDSN--YLRPVLILGPL---LDRLLDNLVNEFPDKFKSCLPETLRPS--------------RE 225 (359)
T ss_pred cccccccccccchhhhhhhcc--ccCceEeccch---HHHHHHHHHHhhhccccccchhhhccc--------------HH
Confidence 334445567899999998876 44999999998 556999999999999999999999984 68
Q ss_pred HHHHHHHcCCcceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHH
Q psy14166 166 TMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESR 240 (264)
Q Consensus 166 ~f~~~i~~~~flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r 240 (264)
+|+++++++.||+++++++++|||+..+|+++.++|++||||++..+++.|+...+.|++|||.|-|.+.+++++
T Consensus 226 eme~~~k~~~fI~~~q~~~~~~~tsv~si~~va~k~~HCiLdv~~~ai~rLq~~~IyPIvIfIr~ks~~~i~e~~ 300 (359)
T KOG0708|consen 226 EMERDSKEETFIDAGQRSNGLYGTSVASIREVAEKGKHCLLDVGGDAIRRLQRNQIYPIVIFIRVKSKKQIKERN 300 (359)
T ss_pred HhhhhcccCceeeecccCCCcceehHHHHHHHhcCCCceEEecCcchHHHHHhcceeceEEEEEechHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999877
No 13
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.75 E-value=1.9e-17 Score=140.20 Aligned_cols=125 Identities=23% Similarity=0.268 Sum_probs=104.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCC--CccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCcee
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPD--KFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLY 187 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~--~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~Y 187 (264)
+++++|+||||||||||++.|+...+. .+.+..++|||++. .+|.+|+|++.++|..++.++.|.++.++.+++|
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPAS---AGGENHIALSTEEFDHREDGGAFALSWQAHGLSY 77 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCC---CCCccccccCHHHHHHHHHCCCEEEEEeecCccc
Confidence 368999999999999999999887543 24456789999864 4689999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166 188 GTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKES 239 (264)
Q Consensus 188 Gt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~ 239 (264)
|++. .+...+++|..+|++++.+....++.......+|||.+| .+.+.++
T Consensus 78 g~~~-~i~~~~~~g~~vv~~g~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~R 127 (179)
T TIGR02322 78 GIPA-EIDQWLEAGDVVVVNGSRAVLPEARQRYPNLLVVNITAS-PDVLAQR 127 (179)
T ss_pred cChH-HHHHHHhcCCEEEEECCHHHHHHHHHHCCCcEEEEEECC-HHHHHHH
Confidence 9997 588888999999999998887777764446689999975 5666553
No 14
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.75 E-value=1.1e-17 Score=143.42 Aligned_cols=126 Identities=17% Similarity=0.207 Sum_probs=102.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGT 189 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt 189 (264)
+.+++|+||||||||||++.|+...+..|......+||+++. .+.+|++++.++|.+++.++.|.+++.+.||+|||
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~ 78 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASA---GSENHIALSEQEFFTRAGQNLFALSWHANGLYYGV 78 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccch---hHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCC
Confidence 468999999999999999999987654455566778887654 35788999999999999999999899999999999
Q ss_pred CHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCC-CcEEEEEeCCChHHHHHHH
Q psy14166 190 SSDSVLELVNSGRVAVLNPAYQSLKVLRSPAF-KPLVLFIAPPPFAALKESR 240 (264)
Q Consensus 190 ~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~-~p~vIfI~pps~e~l~~~r 240 (264)
+. .++..++.|+.+|+++.......++...- ...+|||.+| .+.+.++.
T Consensus 79 ~~-~~~~~l~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~s-~e~l~~RL 128 (186)
T PRK10078 79 GI-EIDLWLHAGFDVLVNGSRAHLPQARARYQSALLPVCLQVS-PEILRQRL 128 (186)
T ss_pred cH-HHHHHHhCCCEEEEeChHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHH
Confidence 98 59999999999999988877666665432 3457788765 66666543
No 15
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.66 E-value=1e-15 Score=128.83 Aligned_cols=136 Identities=22% Similarity=0.306 Sum_probs=116.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCC--ccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCcee
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDK--FTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLY 187 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~--f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~Y 187 (264)
+++|+++||||+||+||+..+....+.. +.+.-.++||+...| |.++.-+|.++|..+..+|.|.-+|+..|..|
T Consensus 5 G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag---~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Y 81 (192)
T COG3709 5 GRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAG---GEDHDALSEAEFNTRAGQGAFALSWQAHGLSY 81 (192)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCC---cccccccCHHHHHHHhhcCceeEEehhcCccc
Confidence 5899999999999999999888776554 788888999997654 57788999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHHhhccCCCccc
Q psy14166 188 GTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRITAFARSPFDQ 251 (264)
Q Consensus 188 Gt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~~~~~~~~~~~ 251 (264)
|++. .|...++.|.++|++++...+..+|..+..-.+|-|.++ +++|.+ |...+++++.++
T Consensus 82 gip~-eId~wl~~G~vvl~NgSRa~Lp~arrry~~Llvv~ita~-p~VLaq-RL~~RGREs~ee 142 (192)
T COG3709 82 GIPA-EIDLWLAAGDVVLVNGSRAVLPQARRRYPQLLVVCITAS-PEVLAQ-RLAERGRESREE 142 (192)
T ss_pred cCch-hHHHHHhCCCEEEEeccHhhhHHHHHhhhcceeEEEecC-HHHHHH-HHHHhccCCHHH
Confidence 9996 588999999999999999999999988777778888775 778876 566666665443
No 16
>PRK08356 hypothetical protein; Provisional
Probab=99.46 E-value=1.3e-13 Score=119.00 Aligned_cols=120 Identities=13% Similarity=0.220 Sum_probs=89.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTS 190 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~ 190 (264)
.+|+|+||+||||||+++.|.. + .|. .++++++.++..+.++.+|+|++...|..++..+.|++++.+.++.||++
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~-~--g~~-~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~ 81 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE-K--GFC-RVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGED 81 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-C--CCc-EEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcH
Confidence 5789999999999999999953 3 354 78899998888889999999999999999888999999999999999987
Q ss_pred H---HHHHHHHHcCCeEEEEcCH--HHHHHHhcCCCCcEEEEEeCCChHHHHH
Q psy14166 191 S---DSVLELVNSGRVAVLNPAY--QSLKVLRSPAFKPLVLFIAPPPFAALKE 238 (264)
Q Consensus 191 ~---~si~~vl~~Gki~vld~~~--~~~~~Lr~~~~~p~vIfI~pps~e~l~~ 238 (264)
. ..+..+ ..+..+++|+=. .-++.|+. ....+|||.+|. +.+.+
T Consensus 82 ~~~~~~~~~~-~~~~~ividG~r~~~q~~~l~~--~~~~vi~l~~~~-~~~~~ 130 (195)
T PRK08356 82 ILIRLAVDKK-RNCKNIAIDGVRSRGEVEAIKR--MGGKVIYVEAKP-EIRFE 130 (195)
T ss_pred HHHHHHHHHh-ccCCeEEEcCcCCHHHHHHHHh--cCCEEEEEECCH-HHHHH
Confidence 4 222222 333345556431 22233333 235899999985 44443
No 17
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=99.34 E-value=1.9e-12 Score=120.04 Aligned_cols=114 Identities=17% Similarity=0.235 Sum_probs=90.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCC--------ccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeee
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDK--------FTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGE 181 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~--------f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~ 181 (264)
+++|+|+||+|||||+|+..|++..+.. +...+++||++|+.+|.+|++|||++...+.+.+..+.|+++.
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a- 82 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDA- 82 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHH-
Confidence 4799999999999999999999886531 3345688999999999999999999999998888888888765
Q ss_pred ecCceecCCHHHHHHHHHcCCeEEEEcCHHH-HHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166 182 YKGHLYGTSSDSVLELVNSGRVAVLNPAYQS-LKVLRSPAFKPLVLFIAPPPFAALKES 239 (264)
Q Consensus 182 ~~g~~YGt~~~si~~vl~~Gki~vld~~~~~-~~~Lr~~~~~p~vIfI~pps~e~l~~~ 239 (264)
...|.++++.|+++||++--.. ++.|-. ++ +..||+.+.+++.
T Consensus 83 ---------~~~i~~i~~~gk~pIlvGGt~~Y~~al~~-g~-----~~~p~~~~~~r~~ 126 (307)
T PRK00091 83 ---------LAAIADILARGKLPILVGGTGLYIKALLE-GL-----SPLPPADPELRAE 126 (307)
T ss_pred ---------HHHHHHHHhCCCCEEEECcHHHHHHHhcc-CC-----CCCCCCCHHHHHH
Confidence 6788899999999999876554 444422 22 2467777777654
No 18
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.01 E-value=5.1e-10 Score=94.88 Aligned_cols=115 Identities=17% Similarity=0.110 Sum_probs=69.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCccee-ecCHHHHHH---HH-HcCCcceee-eec
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYH-FVSHETMTS---LI-SAGKMIEFG-EYK 183 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~-fvs~~~f~~---~i-~~~~flE~~-~~~ 183 (264)
+++|+|+|+|||||||+++.|....+..|. .-++|++ +.....+.. .+ .++.+.++. ...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~--------------~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWL--------------HFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEF 67 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCcc--------------ccCccHHHHhcChhhcccccccccCccCCcccchHH
Confidence 579999999999999999999988653221 0123322 221111110 00 011111111 134
Q ss_pred CceecCCHHHHHHHHHcCCeEEEEcCHH----HHHHHhc-CCCCcEEEEEeCCChHHHHHH
Q psy14166 184 GHLYGTSSDSVLELVNSGRVAVLNPAYQ----SLKVLRS-PAFKPLVLFIAPPPFAALKES 239 (264)
Q Consensus 184 g~~YGt~~~si~~vl~~Gki~vld~~~~----~~~~Lr~-~~~~p~vIfI~pps~e~l~~~ 239 (264)
++.|++..+.+...+++|..||+|.... ..+.++. .....++||+.+| .+++.++
T Consensus 68 ~~~y~~~~~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~-~~~l~~R 127 (175)
T cd00227 68 RLLEGAWYEAVAAMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCP-GEVAEGR 127 (175)
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECC-HHHHHHH
Confidence 4789999999999999999999997543 2222222 2335678999998 4666553
No 19
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=98.93 E-value=7.1e-10 Score=101.97 Aligned_cols=97 Identities=18% Similarity=0.246 Sum_probs=74.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCCCC--------ccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeec
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDPDK--------FTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYK 183 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p~~--------f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~ 183 (264)
+|+|+||+|||||+|+..|++.++.. +-...+.+|++|..+|.+|++|||++.-++..... .
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~----------v 70 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYS----------A 70 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEc----------H
Confidence 48999999999999999999886531 12235789999999999999999998544432111 2
Q ss_pred CceecCCHHHHHHHHHcCCeEEEEcCH-HHHHHHhc
Q psy14166 184 GHLYGTSSDSVLELVNSGRVAVLNPAY-QSLKVLRS 218 (264)
Q Consensus 184 g~~YGt~~~si~~vl~~Gki~vld~~~-~~~~~Lr~ 218 (264)
+++|+...+.|.++.+.|+++||.+-- -.++.|-.
T Consensus 71 ~~f~~~a~~~i~~~~~~g~~pi~vGGTg~Yi~all~ 106 (287)
T TIGR00174 71 ADFQTLALNAIADITARGKIPLLVGGTGLYLKALLE 106 (287)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHc
Confidence 567888899999999999998887653 45666654
No 20
>PRK00098 GTPase RsgA; Reviewed
Probab=98.80 E-value=4.3e-09 Score=97.08 Aligned_cols=94 Identities=19% Similarity=0.134 Sum_probs=68.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCcccccc-------ccCCCCCCCCCC------------CcceeecCHHHHHH
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTP-------YTTRPKKPGEED------------GKEYHFVSHETMTS 169 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~-------~TTR~~r~gE~~------------G~dY~fvs~~~f~~ 169 (264)
.+++++|+|+||||||||+|.|........ ..|+ ||||..+..+.+ +.+|++++.+++..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~-g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~ 241 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKT-GEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEH 241 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCC-cceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHH
Confidence 358999999999999999999998754332 2333 799876654444 45667788877776
Q ss_pred HHHc-CCcceeeeecC-ceecCCHHHHHHHHHcCCe
Q psy14166 170 LISA-GKMIEFGEYKG-HLYGTSSDSVLELVNSGRV 203 (264)
Q Consensus 170 ~i~~-~~flE~~~~~g-~~YGt~~~si~~vl~~Gki 203 (264)
.+.. ..+.+.-.|.+ .+|+++.++|++++++|++
T Consensus 242 ~f~~~~~~~~~c~f~~c~h~~ep~c~v~~a~~~g~i 277 (298)
T PRK00098 242 YFPEFRPLSGDCKFRNCTHLHEPGCAVKAAVEEGEI 277 (298)
T ss_pred HHHHHHHHhCCCCCCCCcCCCCCCChHHHHHHcCCC
Confidence 5433 34444444454 5899999999999999985
No 21
>PLN02840 tRNA dimethylallyltransferase
Probab=98.68 E-value=8.4e-09 Score=99.22 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=74.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCC--------ccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceee
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDK--------FTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFG 180 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~--------f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~ 180 (264)
.+.+|+|+||+|||||||+..|++..... +...+..+|++|...|.+++.||+++--...+....+.
T Consensus 20 ~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~----- 94 (421)
T PLN02840 20 KEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGA----- 94 (421)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHH-----
Confidence 34689999999999999999999986531 11235568999999999999999998665543333333
Q ss_pred eecCceecCCHHHHHHHHHcCCeEEEEcC-HHHHHHHhc
Q psy14166 181 EYKGHLYGTSSDSVLELVNSGRVAVLNPA-YQSLKVLRS 218 (264)
Q Consensus 181 ~~~g~~YGt~~~si~~vl~~Gki~vld~~-~~~~~~Lr~ 218 (264)
++..-...|.++.+.|+++||.+- .-.++.|-.
T Consensus 95 -----F~~~A~~~I~~i~~rgkiPIvVGGTGlYl~aLl~ 128 (421)
T PLN02840 95 -----FFDDARRATQDILNRGRVPIVAGGTGLYLRWYIY 128 (421)
T ss_pred -----HHHHHHHHHHHHHhcCCCEEEEcCccHHHHHHhc
Confidence 344457888999999999887765 345666643
No 22
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.64 E-value=4.9e-08 Score=78.90 Aligned_cols=103 Identities=18% Similarity=0.336 Sum_probs=63.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcce---eeeecCceec
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIE---FGEYKGHLYG 188 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE---~~~~~g~~YG 188 (264)
+|+|+||+||||||+++.|++..+ +.+++.+.+...+.....-. +.+.....+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----------------------~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----------------------AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQ 57 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----------------------EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----------------------CEEEeHHHHHHHHcccccccchhHHHHHHHHHH
Confidence 589999999999999999997643 23455555554443322111 1111122333
Q ss_pred CCHHHHHHHHHcCCeEEEEcCH---H----HHHHHhcCCCCcEEEEEeCCChHHHHH
Q psy14166 189 TSSDSVLELVNSGRVAVLNPAY---Q----SLKVLRSPAFKPLVLFIAPPPFAALKE 238 (264)
Q Consensus 189 t~~~si~~vl~~Gki~vld~~~---~----~~~~Lr~~~~~p~vIfI~pps~e~l~~ 238 (264)
.-.+.++..++.|..+|+|... . ....++..+....+|++.+| .+.+.+
T Consensus 58 ~~~~~~~~~l~~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~-~~~~~~ 113 (143)
T PF13671_consen 58 ILNAAIRKALRNGNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAP-EETLRE 113 (143)
T ss_dssp HHHHHHHHHHHTT-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHH-HHHHHH
T ss_pred HHHHHHHHHHHcCCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECC-HHHHHH
Confidence 4446778888999999998543 1 23444456777889999886 455554
No 23
>KOG3354|consensus
Probab=98.52 E-value=8.3e-07 Score=74.87 Aligned_cols=109 Identities=19% Similarity=0.250 Sum_probs=74.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTS 190 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~ 190 (264)
-.|+++|+||+||||+.+.|.....-. .++|.||| +.+..++|- +|--+.....-+++-...
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~~---------------F~dgDd~H--p~~NveKM~-~GipLnD~DR~pWL~~i~ 74 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGLK---------------FIDGDDLH--PPANVEKMT-QGIPLNDDDRWPWLKKIA 74 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCCc---------------ccccccCC--CHHHHHHHh-cCCCCCcccccHHHHHHH
Confidence 389999999999999999999886422 36889998 666666663 454444333333333322
Q ss_pred HHHHHHHHHcCCeEEEEcCH---HHHHHHhc----------CCCCcEEEEEeCCChHHHHHH
Q psy14166 191 SDSVLELVNSGRVAVLNPAY---QSLKVLRS----------PAFKPLVLFIAPPPFAALKES 239 (264)
Q Consensus 191 ~~si~~vl~~Gki~vld~~~---~~~~~Lr~----------~~~~p~vIfI~pps~e~l~~~ 239 (264)
...+..+++|+-+||-++. +....||. .+....+||+.. |.|++..+
T Consensus 75 -~~~~~~l~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~-s~evi~~R 134 (191)
T KOG3354|consen 75 -VELRKALASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSA-SFEVILKR 134 (191)
T ss_pred -HHHHHHhhcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeec-cHHHHHHH
Confidence 3445556689999999885 34555654 223456889988 88888764
No 24
>PRK06762 hypothetical protein; Provisional
Probab=98.50 E-value=1.1e-06 Score=73.42 Aligned_cols=101 Identities=14% Similarity=0.093 Sum_probs=58.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCc-eecC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGH-LYGT 189 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~-~YGt 189 (264)
++|+|+|++||||||+++.|.+..+. .+.+++.+.+...+... + . ..+. .+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~---------------------~~~~i~~D~~r~~l~~~-~---~-~~~~~~~~~ 56 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGR---------------------GTLLVSQDVVRRDMLRV-K---D-GPGNLSIDL 56 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEecHHHHHHHhccc-c---C-CCCCcCHHH
Confidence 68999999999999999999987532 12233444444432111 0 0 0010 1111
Q ss_pred CHHHHHHHHHcCCeEEEEcCHH------HHHHHhcC-CCCcEEEEEeCCChHHHH
Q psy14166 190 SSDSVLELVNSGRVAVLNPAYQ------SLKVLRSP-AFKPLVLFIAPPPFAALK 237 (264)
Q Consensus 190 ~~~si~~vl~~Gki~vld~~~~------~~~~Lr~~-~~~p~vIfI~pps~e~l~ 237 (264)
..+.++..++.|.++|+|.... .++.+... +....+||+++|-...++
T Consensus 57 ~~~~~~~~~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~ 111 (166)
T PRK06762 57 IEQLVRYGLGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLR 111 (166)
T ss_pred HHHHHHHHHhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHH
Confidence 1234445577899999987631 24445433 334578999998443333
No 25
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.46 E-value=4e-07 Score=78.03 Aligned_cols=87 Identities=15% Similarity=0.093 Sum_probs=53.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHc--CCcceeee---ecC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISA--GKMIEFGE---YKG 184 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~--~~flE~~~---~~g 184 (264)
+++|+|.|++||||||+++.|.+.... .+ ...++++.|.. +.. .+.+...+.. ..+..+.. +..
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~-~~-~~~~~~~~p~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQ-QG-RDVVFTREPGG-TPL--------GEKLRELLLDPNEEMDDKTELLLFYA 71 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH-cC-CceeEeeCCCC-ChH--------HHHHHHHHhccccCCCHHHHHHHHHH
Confidence 589999999999999999999986532 11 22345666652 221 1344444431 22222221 123
Q ss_pred ceecCCHHHHHHHHHcCCeEEEE
Q psy14166 185 HLYGTSSDSVLELVNSGRVAVLN 207 (264)
Q Consensus 185 ~~YGt~~~si~~vl~~Gki~vld 207 (264)
+.|+...+.+...+++|.++|+|
T Consensus 72 ~r~~~~~~~i~~~l~~g~~vi~D 94 (205)
T PRK00698 72 ARAQHLEEVIKPALARGKWVISD 94 (205)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEC
Confidence 44666666677777889999998
No 26
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.40 E-value=1.9e-06 Score=71.72 Aligned_cols=106 Identities=15% Similarity=0.222 Sum_probs=55.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCCHH
Q psy14166 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSD 192 (264)
Q Consensus 113 ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~~~ 192 (264)
|+|+||+||||||+++.|.......+ +++.++. .......+.....+.+. .....+..-.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~---------------v~~D~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 61 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKF---------------IEGDDLH--PAANIEKMSAGIPLNDD--DRWPWLQNLND 61 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeE---------------EeCcccc--ChHHHHHHHcCCCCChh--hHHHHHHHHHH
Confidence 57999999999999999998753111 1112211 00001111111111000 00011222234
Q ss_pred HHHHHHHcCCeEEEEcCH---HHHHHHhcCCCCcEEEEEeCCChHHHHH
Q psy14166 193 SVLELVNSGRVAVLNPAY---QSLKVLRSPAFKPLVLFIAPPPFAALKE 238 (264)
Q Consensus 193 si~~vl~~Gki~vld~~~---~~~~~Lr~~~~~p~vIfI~pps~e~l~~ 238 (264)
.+...+..|..+|++... .....++..+....+||+.+| .+++.+
T Consensus 62 ~~~~~l~~~~~~Vi~~t~~~~~~r~~~~~~~~~~~~i~l~~~-~e~~~~ 109 (163)
T TIGR01313 62 ASTAAAAKNKVGIITCSALKRHYRDILREAEPNLHFIYLSGD-KDVILE 109 (163)
T ss_pred HHHHHHhcCCCEEEEecccHHHHHHHHHhcCCCEEEEEEeCC-HHHHHH
Confidence 455566778777777663 445566655556678999887 445543
No 27
>PLN02165 adenylate isopentenyltransferase
Probab=98.37 E-value=7.5e-07 Score=83.54 Aligned_cols=99 Identities=19% Similarity=0.247 Sum_probs=61.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCc--------cccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceee
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKF--------TQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFG 180 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f--------~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~ 180 (264)
.+++|+|+||+|||||+|+..|+...+..+ -.....+|.+|...|..|+.||.++.-... .+
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~----------~~ 111 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPD----------DG 111 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccc----------cc
Confidence 568999999999999999999998854210 011234567776667788888766521111 11
Q ss_pred eec-CceecCCHHHHHHHHHcCCeEEEEcCH-HHHHHHh
Q psy14166 181 EYK-GHLYGTSSDSVLELVNSGRVAVLNPAY-QSLKVLR 217 (264)
Q Consensus 181 ~~~-g~~YGt~~~si~~vl~~Gki~vld~~~-~~~~~Lr 217 (264)
.|. +.+...-...+.++.+.|+++|+.+-- -.++.|-
T Consensus 112 ~~sv~~F~~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl 150 (334)
T PLN02165 112 ELTASEFRSLASLSISEITSRQKLPIVAGGSNSFIHALL 150 (334)
T ss_pred eeeHHHHHHHHHHHHHHHHHCCCcEEEECChHHHHHHHH
Confidence 111 112222345677888899998887664 3444443
No 28
>PLN02748 tRNA dimethylallyltransferase
Probab=98.36 E-value=1.8e-07 Score=91.42 Aligned_cols=99 Identities=18% Similarity=0.206 Sum_probs=69.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCC--------ccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceee
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDK--------FTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFG 180 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~--------f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~ 180 (264)
.+++|+|+||+|||||+|+..|+..++.. +-.-++..|.+|...|..|+.||+++--........+.|.
T Consensus 21 ~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~--- 97 (468)
T PLN02748 21 KAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFR--- 97 (468)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHH---
Confidence 56799999999999999999999886421 1112345788888889999999998754443322333332
Q ss_pred eecCceecCCHHHHHHHHHcCCeEEEEcCH-HHHHHHh
Q psy14166 181 EYKGHLYGTSSDSVLELVNSGRVAVLNPAY-QSLKVLR 217 (264)
Q Consensus 181 ~~~g~~YGt~~~si~~vl~~Gki~vld~~~-~~~~~Lr 217 (264)
..-...|.++.+.|+++||.+-- -.++.|-
T Consensus 98 -------~~A~~~I~~I~~rgk~PIlVGGTglYi~aLl 128 (468)
T PLN02748 98 -------DHAVPLIEEILSRNGLPVIVGGTNYYIQALV 128 (468)
T ss_pred -------HHHHHHHHHHHhcCCCeEEEcChHHHHHHHH
Confidence 22356788889999998887664 3455554
No 29
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=98.36 E-value=1.8e-07 Score=86.67 Aligned_cols=95 Identities=14% Similarity=0.174 Sum_probs=69.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccc-----------cccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcce
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVT-----------PYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIE 178 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v-----------~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE 178 (264)
+++|+|+||+|||||.|+-.|++.+. .+| +..|.+|...|..++.||+++--...+....+.|.+
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~~~----eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~ 79 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKGKA----EIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYK 79 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC----cEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHH
Confidence 46999999999999999999998842 343 357888888889999999997655443333333432
Q ss_pred eeeecCceecCCHHHHHHHHHcCCeEEEEcC-HHHHHHHhc
Q psy14166 179 FGEYKGHLYGTSSDSVLELVNSGRVAVLNPA-YQSLKVLRS 218 (264)
Q Consensus 179 ~~~~~g~~YGt~~~si~~vl~~Gki~vld~~-~~~~~~Lr~ 218 (264)
.-.+.|+++.+.|+++||.+- .-.++.|-.
T Consensus 80 ----------~a~~~i~~i~~~gk~PilvGGTglYi~all~ 110 (300)
T PRK14729 80 ----------EALKIIKELRQQKKIPIFVGGSAFYFKHLKY 110 (300)
T ss_pred ----------HHHHHHHHHHHCCCCEEEEeCchHHHHHHHc
Confidence 235678888899999877755 456666643
No 30
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.35 E-value=1.7e-06 Score=78.82 Aligned_cols=105 Identities=13% Similarity=0.200 Sum_probs=60.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeee---cC-ce
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEY---KG-HL 186 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~---~g-~~ 186 (264)
++|+|+|++||||||+++.|++.++. +.+++.+.+..++....-.....| .+ ..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~----------------------~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPK----------------------AVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLV 60 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCC----------------------CEEEeccHHHHHhcCCCcccccccChHHHHHH
Confidence 68999999999999999999987631 223344444433321100000000 00 01
Q ss_pred ecCCHHHHHHHHHcCCeEEEEcCH---HHHH----HHhcCCCCcEEEEEeCCChHHHHH
Q psy14166 187 YGTSSDSVLELVNSGRVAVLNPAY---QSLK----VLRSPAFKPLVLFIAPPPFAALKE 238 (264)
Q Consensus 187 YGt~~~si~~vl~~Gki~vld~~~---~~~~----~Lr~~~~~p~vIfI~pps~e~l~~ 238 (264)
+....+.+.+.++.|..+|+|..+ ...+ .++..+....+||+.+| .+++.+
T Consensus 61 ~~~~~~~~~~~l~~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~-~e~~~~ 118 (300)
T PHA02530 61 TKAQEAAALAALKSGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVP-VEELVK 118 (300)
T ss_pred HHHHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCC-HHHHHH
Confidence 122234456677889999998664 2222 23445566778999885 666655
No 31
>KOG3580|consensus
Probab=98.35 E-value=1.8e-06 Score=85.17 Aligned_cols=117 Identities=22% Similarity=0.372 Sum_probs=88.0
Q ss_pred CCCCCcchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHH
Q psy14166 90 DREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTS 169 (264)
Q Consensus 90 ~~~~~~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~ 169 (264)
-....+.||.|++.... ..|+|+|+||-+ .--..+|+...|+.|..+-. - |+. +|-+-
T Consensus 613 vqtkfPaYERVvLREAg--FkRPVvifGPiA---DiAmeKLa~E~PD~fqiAkt---e-prd---ag~~~---------- 670 (1027)
T KOG3580|consen 613 VQTKFPAYERVVLREAG--FKRPVVIFGPIA---DIAMEKLANELPDWFQIAKT---E-PRD---AGSEK---------- 670 (1027)
T ss_pred ecccCCchhhhhhhhhc--ccCceEEeccHH---HHHHHHHhhhCcchhhhhcc---c-ccc---CCccc----------
Confidence 34567899999987764 348999999986 45557898899998764421 1 111 11110
Q ss_pred HHHcCCcceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHHhh
Q psy14166 170 LISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRITA 243 (264)
Q Consensus 170 ~i~~~~flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~~~ 243 (264)
.-.+ +.+++|+.++++.|+++||+.|.++..|......|+|||+.|.|..-++.||+..
T Consensus 671 ---stg~------------irL~TvrqiieqDKHALLDVTP~AvdrLNY~QwypIVvff~PdSrqgvktmRqrL 729 (1027)
T KOG3580|consen 671 ---STGV------------IRLNTVRQIIEQDKHALLDVTPKAVDRLNYTQWYPIVVFFNPDSRQGVKTMRQRL 729 (1027)
T ss_pred ---ccce------------EEehhhHHHHhcccchhhccCHHHHhhhccceeeeEEEEeCCcchHHHHHHHHHh
Confidence 0011 1246899999999999999999999999999999999999999999999998774
No 32
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.35 E-value=2.5e-06 Score=71.37 Aligned_cols=103 Identities=21% Similarity=0.271 Sum_probs=72.2
Q ss_pred EcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCCHHHHH
Q psy14166 116 IGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSVL 195 (264)
Q Consensus 116 iGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~~~si~ 195 (264)
||.|||||||+...|+....-.| ++|.+.| .++.+++| .+|.-|.-....+++-. -.+.+.
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~f---------------idGDdlH--p~aNi~KM-~~GiPL~DdDR~pWL~~-l~~~~~ 61 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKF---------------IDGDDLH--PPANIEKM-SAGIPLNDDDRWPWLEA-LGDAAA 61 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCce---------------ecccccC--CHHHHHHH-hCCCCCCcchhhHHHHH-HHHHHH
Confidence 69999999999999998865333 5788887 67788777 46666554443343222 224455
Q ss_pred HHHHcCCeEEEEcCH---HHHHHHhcCCCCcEEEEEeCCChHHHHH
Q psy14166 196 ELVNSGRVAVLNPAY---QSLKVLRSPAFKPLVLFIAPPPFAALKE 238 (264)
Q Consensus 196 ~vl~~Gki~vld~~~---~~~~~Lr~~~~~p~vIfI~pps~e~l~~ 238 (264)
+..+.|+.+|+.++. .....||.......+||++.+ .+.+.+
T Consensus 62 ~~~~~~~~~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~-~~~i~~ 106 (161)
T COG3265 62 SLAQKNKHVVIACSALKRSYRDLLREANPGLRFVYLDGD-FDLILE 106 (161)
T ss_pred HhhcCCCceEEecHHHHHHHHHHHhccCCCeEEEEecCC-HHHHHH
Confidence 556678877888875 577889988878889999986 544443
No 33
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.29 E-value=2e-06 Score=76.87 Aligned_cols=104 Identities=11% Similarity=0.255 Sum_probs=59.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCCH
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSS 191 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~~ 191 (264)
+|+|+|++||||||+++.|...... .|.+++.++.+.+...+.. +-+ .+.........
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~------------------~~~~v~~i~~D~lr~~~~~--~~~--~~e~~~~~~~~ 58 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE------------------KNIDVIILGTDLIRESFPV--WKE--KYEEFIRDSTL 58 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH------------------cCCceEEEccHHHHHHhHH--hhH--HhHHHHHHHHH
Confidence 5899999999999999999976421 1233344444333322100 000 00011112223
Q ss_pred HHHHHHHHcCCeEEEEcCHH-------HHHHHhcCCCCcEEEEEeCCChHHHHH
Q psy14166 192 DSVLELVNSGRVAVLNPAYQ-------SLKVLRSPAFKPLVLFIAPPPFAALKE 238 (264)
Q Consensus 192 ~si~~vl~~Gki~vld~~~~-------~~~~Lr~~~~~p~vIfI~pps~e~l~~ 238 (264)
..++..++.|..+|+|...- ....++..+....+||+.+| .+.+.+
T Consensus 59 ~~i~~~l~~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p-~e~~~~ 111 (249)
T TIGR03574 59 YLIKTALKNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAP-LDTLLR 111 (249)
T ss_pred HHHHHHHhCCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCC-HHHHHH
Confidence 56778888999999997631 12333445556678999987 445544
No 34
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.27 E-value=5.9e-07 Score=76.17 Aligned_cols=94 Identities=22% Similarity=0.219 Sum_probs=52.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCccc------cccccCCCCCCCCCCCcceeecCHHHHHHH--------HHcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQ------VTPYTTRPKKPGEEDGKEYHFVSHETMTSL--------ISAGK 175 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~------~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~--------i~~~~ 175 (264)
+++++|+|+||||||||+|.|....-..-+. -=.|||+.......+.. -..+|..-|... --...
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g-~~iIDTPGf~~~~l~~~~~~~l~~~ 113 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG-GYIIDTPGFRSFGLWHIDPEELAQY 113 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS-EEEECSHHHHT--GCCS-HHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC-cEEEECCCCCccccccCCHHHHHHH
Confidence 3899999999999999999999863211111 12488887654444221 223444444321 11234
Q ss_pred cceeeeecCc-------eecCCHHHHHHHHHcCCeE
Q psy14166 176 MIEFGEYKGH-------LYGTSSDSVLELVNSGRVA 204 (264)
Q Consensus 176 flE~~~~~g~-------~YGt~~~si~~vl~~Gki~ 204 (264)
|.|...+.+. +-..+.++|++++++|.+.
T Consensus 114 F~e~~~~~~~CkF~~C~H~~Ep~CaV~~av~~g~i~ 149 (161)
T PF03193_consen 114 FPEFRPLAGQCKFRDCTHIHEPGCAVKAAVENGEIS 149 (161)
T ss_dssp SGGGHHHTTHSSSTTTTSSSSTT-HHHHHHHTTSS-
T ss_pred HHHhccccCCCCccCCCCCCCCCChHHHHHHCCCCc
Confidence 5555554432 5677889999999999764
No 35
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.27 E-value=4.3e-06 Score=70.51 Aligned_cols=111 Identities=14% Similarity=0.185 Sum_probs=58.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG 188 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG 188 (264)
++.+|+|+|++|+||||+++.|+..... .|.+..+++.+.+.+.+..+.-..... ....+.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~------------------~g~~v~~id~D~~~~~~~~~~~~~~~~-r~~~~~ 63 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE------------------AGYPVEVLDGDAVRTNLSKGLGFSKED-RDTNIR 63 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH------------------cCCeEEEEcCccHHHHHhcCCCCChhh-HHHHHH
Confidence 4689999999999999999999986421 012233333333333222111000000 000011
Q ss_pred CCHHHHHHHHHcCCeEEEEcC---HHHHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166 189 TSSDSVLELVNSGRVAVLNPA---YQSLKVLRSPAFKPLVLFIAPPPFAALKES 239 (264)
Q Consensus 189 t~~~si~~vl~~Gki~vld~~---~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~ 239 (264)
......+.....|.+++++.. .+..+.++...-...+|||+.| .+.+.++
T Consensus 64 ~~~~~a~~~~~~g~~vi~~~~~~~~~~~~~l~~~~~~~~~v~l~~~-~e~~~~R 116 (175)
T PRK00889 64 RIGFVANLLTRHGVIVLVSAISPYRETREEVRANIGNFLEVFVDAP-LEVCEQR 116 (175)
T ss_pred HHHHHHHHHHhCCCEEEEecCCCCHHHHHHHHhhcCCeEEEEEcCC-HHHHHHh
Confidence 101111223456888888754 2344555544445678999998 5555443
No 36
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.15 E-value=3.5e-06 Score=71.15 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+|+|.|+.||||||+++.|.+...
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999998753
No 37
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.15 E-value=1.3e-06 Score=80.72 Aligned_cols=90 Identities=24% Similarity=0.218 Sum_probs=59.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccc-------cccCCCCCCCCCC-C-----------cceeecCHHHHHH
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVT-------PYTTRPKKPGEED-G-----------KEYHFVSHETMTS 169 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v-------~~TTR~~r~gE~~-G-----------~dY~fvs~~~f~~ 169 (264)
.+++.||+|+||||||||+|+|.......- ..| .|||+..+....+ | .+++.+++++...
T Consensus 163 ~~~~svl~GqSGVGKSSLiN~L~p~~~~~t-~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~~~e~l~~ 241 (301)
T COG1162 163 AGKITVLLGQSGVGKSTLINALLPELNQKT-GEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDLVQ 241 (301)
T ss_pred cCCeEEEECCCCCcHHHHHHhhCchhhhhh-hhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCcccCCHHHHHH
Confidence 358999999999999999999987543322 223 3899887654442 1 2444455555433
Q ss_pred HHHcCCcceeeeecC-------ceecCCHHHHHHHHHcCCeE
Q psy14166 170 LISAGKMIEFGEYKG-------HLYGTSSDSVLELVNSGRVA 204 (264)
Q Consensus 170 ~i~~~~flE~~~~~g-------~~YGt~~~si~~vl~~Gki~ 204 (264)
.|.|+.++.+ .+-+.+.++|++++++|.+.
T Consensus 242 -----~F~ef~~~~~~CkFr~C~H~~EPgCav~~av~~g~i~ 278 (301)
T COG1162 242 -----AFPEFAELARQCKFRDCTHTHEPGCAVKAAVEEGEIA 278 (301)
T ss_pred -----HhHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHcCCCC
Confidence 2333333322 15567889999999999864
No 38
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.14 E-value=4.6e-06 Score=72.55 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+|+|+||||||||||++.|....+
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 468999999999999999999998754
No 39
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.14 E-value=1.3e-05 Score=68.29 Aligned_cols=120 Identities=13% Similarity=0.087 Sum_probs=63.2
Q ss_pred chHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCC
Q psy14166 96 TYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGK 175 (264)
Q Consensus 96 ~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~ 175 (264)
.+|...++.. .+.+|+|+|++|+|||||++.|....+. .|....+++.+.+...+..+.
T Consensus 7 ~~~~~~~~~~---~~~~i~i~G~~GsGKstla~~l~~~l~~------------------~~~~~~~l~~d~~r~~l~~~~ 65 (184)
T TIGR00455 7 KDERQALNGH---RGVVIWLTGLSGSGKSTIANALEKKLES------------------KGYRVYVLDGDNVRHGLNKDL 65 (184)
T ss_pred HHHHHHHhCC---CCeEEEEECCCCCCHHHHHHHHHHHHHH------------------cCCcEEEECChHHHhhhcccc
Confidence 4555554332 4579999999999999999999987431 011112233333332221111
Q ss_pred cceeeeecCceecCCHHHHHHHHHcCCeEEEEcCH---HHHHHHhc--CCCCcEEEEEeCCChHHHHH
Q psy14166 176 MIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAY---QSLKVLRS--PAFKPLVLFIAPPPFAALKE 238 (264)
Q Consensus 176 flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~---~~~~~Lr~--~~~~p~vIfI~pps~e~l~~ 238 (264)
......... .|....+..+..+.+|.++|+|... .....++. ......+||+..| .+.+.+
T Consensus 66 ~~~~~~~~~-~~~~~~~~~~~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~-~e~~~~ 131 (184)
T TIGR00455 66 GFSEEDRKE-NIRRIGEVAKLFVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCP-LEVCEQ 131 (184)
T ss_pred CCCHHHHHH-HHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCC-HHHHHH
Confidence 000000000 1111123345577899999999762 33444443 1223467999988 555544
No 40
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.13 E-value=1.3e-05 Score=65.70 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+|+|+|++||||||+++.|.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 58999999999999999998863
No 41
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.12 E-value=1.6e-05 Score=66.02 Aligned_cols=107 Identities=14% Similarity=0.157 Sum_probs=55.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCCH
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSS 191 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~~ 191 (264)
+|+|+|++|+|||||++.|...... .|.....++.+.+...+..+......... ..|....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~------------------~g~~~~~i~~d~~r~~l~~~~~~~~~~~~-~~~~~~~ 61 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ------------------RGRPVYVLDGDNVRHGLNKDLGFSREDRE-ENIRRIA 61 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH------------------cCCCEEEEcCHHHHHhhhhccCCCcchHH-HHHHHHH
Confidence 4789999999999999999987521 01111222333333222111100000000 0111111
Q ss_pred HHHHHHHHcCCeEEEEcCH---HHHHHHhc--CCCCcEEEEEeCCChHHHHH
Q psy14166 192 DSVLELVNSGRVAVLNPAY---QSLKVLRS--PAFKPLVLFIAPPPFAALKE 238 (264)
Q Consensus 192 ~si~~vl~~Gki~vld~~~---~~~~~Lr~--~~~~p~vIfI~pps~e~l~~ 238 (264)
...+...++|.++|+|... .....++. .+....+||+.+| .+++.+
T Consensus 62 ~~a~~l~~~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~-~e~~~~ 112 (149)
T cd02027 62 EVAKLLADAGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTP-LEVCEQ 112 (149)
T ss_pred HHHHHHHhCCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCC-HHHHHH
Confidence 2334456789999999763 22222222 1456678999998 555543
No 42
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.12 E-value=1.1e-05 Score=69.13 Aligned_cols=113 Identities=20% Similarity=0.339 Sum_probs=64.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHc-----CCcceee----
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISA-----GKMIEFG---- 180 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~-----~~flE~~---- 180 (264)
+++|+|-|+|.||||||++.|....+.- |..++-+.|..++.. +.-+++.
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p---------------------~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~ 59 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEP---------------------WLHLSVDTFVDMMPPGRYRPGDGLEPAGDRP 59 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS----------------------EEEEEHHHHHHHS-GGGGTSTTSEEEETTSE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCC---------------------eEEEecChHHhhcCcccccCCccccccccCC
Confidence 4799999999999999999999887643 222333444443211 1222221
Q ss_pred ---eecCceecCCHHHHHHHHHcCCeEEEEcC---HH-HHHHHhc--CCCCcEEEEEeCCChHHHHHHHHhhcc
Q psy14166 181 ---EYKGHLYGTSSDSVLELVNSGRVAVLNPA---YQ-SLKVLRS--PAFKPLVLFIAPPPFAALKESRITAFA 245 (264)
Q Consensus 181 ---~~~g~~YGt~~~si~~vl~~Gki~vld~~---~~-~~~~Lr~--~~~~p~vIfI~pps~e~l~~~r~~~~~ 245 (264)
.....+|.....+|....+.|..+|+|-- +. ..+.++. .++..++|-|.+| ++++++ |..++.
T Consensus 60 ~~~~~~~~~~~~~~~~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cp-leil~~-RE~~Rg 131 (174)
T PF07931_consen 60 DGGPLFRRLYAAMHAAIAAMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCP-LEILER-RERARG 131 (174)
T ss_dssp EE-HHHHHHHHHHHHHHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE---HHHHHH-HHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECC-HHHHHH-HHHhcC
Confidence 11122455556788888999999998832 22 2344432 4677889999998 666654 555544
No 43
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.12 E-value=8.8e-06 Score=69.65 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=22.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+.|+|+|+.||||||+-+.|++...
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~ 27 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALN 27 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcC
Confidence 6799999999999999999998754
No 44
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.11 E-value=3.5e-05 Score=66.57 Aligned_cols=38 Identities=16% Similarity=0.047 Sum_probs=28.8
Q ss_pred CcchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 94 IPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 94 ~~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+..++.-.++.+ .+.+|+|+|++|+|||||++.|....
T Consensus 11 v~~~~~~~~~~~---~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 11 VTKAQREQLHGH---KGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCHHHHHHhcCC---CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344555554433 45799999999999999999998864
No 45
>PRK07261 topology modulation protein; Provisional
Probab=98.10 E-value=1.8e-05 Score=67.10 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.|+|+|+||||||||++.|+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998764
No 46
>KOG1384|consensus
Probab=98.10 E-value=7.3e-06 Score=76.30 Aligned_cols=113 Identities=20% Similarity=0.309 Sum_probs=81.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCC--------ccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeee
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDK--------FTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGE 181 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~--------f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~ 181 (264)
-++|||+|++|+|||-|+--|+..+|.- +.--...+|.++...|..|+.+|.+..-..+.....++|-+
T Consensus 7 ~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~--- 83 (348)
T KOG1384|consen 7 DKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFED--- 83 (348)
T ss_pred ceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHH---
Confidence 3899999999999999999999887641 11113457888888899999999876655555544555533
Q ss_pred ecCceecCCHHHHHHHHHcCCeEEEEcCHH-HHHHHhcC--------------------CCCcEEEEEeCCC
Q psy14166 182 YKGHLYGTSSDSVLELVNSGRVAVLNPAYQ-SLKVLRSP--------------------AFKPLVLFIAPPP 232 (264)
Q Consensus 182 ~~g~~YGt~~~si~~vl~~Gki~vld~~~~-~~~~Lr~~--------------------~~~p~vIfI~pps 232 (264)
.-..+|.++++.|++.|+.+--. .++.|-.. -+++.+|+|.++.
T Consensus 84 -------~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~ 148 (348)
T KOG1384|consen 84 -------DASRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQ 148 (348)
T ss_pred -------HHHHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCcccCcccccCCCCCcccccceEEEEEecch
Confidence 33678999999999988876644 45544432 1457788888875
No 47
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.02 E-value=4.5e-05 Score=65.17 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+.+++|+|+||+|||||++.|.....
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57999999999999999999998753
No 48
>PRK06217 hypothetical protein; Validated
Probab=98.01 E-value=1.6e-05 Score=67.82 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.|+|+|+||||||||++.|.+..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 59999999999999999999875
No 49
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.01 E-value=2.3e-05 Score=78.50 Aligned_cols=120 Identities=15% Similarity=0.247 Sum_probs=65.1
Q ss_pred hhhhcCCCC-CCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCC-c
Q psy14166 99 EVAKLYPME-TLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGK-M 176 (264)
Q Consensus 99 ev~~~~~~~-~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~-f 176 (264)
++..++|.. ..+.+|+|+|++|||||||++.|+..... ..|....+++.+.+...+..+. |
T Consensus 380 iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~-----------------~~g~~~~~lD~D~vr~~l~ge~~f 442 (568)
T PRK05537 380 ELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME-----------------MRGRPVTLLDGDVVRKHLSSELGF 442 (568)
T ss_pred HHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh-----------------ccCceEEEeCCcHHHHhccCCCCC
Confidence 444555533 36779999999999999999999987431 0122233334333332221110 0
Q ss_pred ceeeeecCceecCCHHHHHHHHHcCCeEEEEcC-------HHHHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166 177 IEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPA-------YQSLKVLRSPAFKPLVLFIAPPPFAALKES 239 (264)
Q Consensus 177 lE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~-------~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~ 239 (264)
-+. + ....|.........+++.|.++|++.. ....+.++..+ ..++||++.| ++++.++
T Consensus 443 ~~~-e-r~~~~~~l~~~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~p-~e~l~~R 508 (568)
T PRK05537 443 SKE-D-RDLNILRIGFVASEITKNGGIAICAPIAPYRATRREVREMIEAYG-GFIEVHVATP-LEVCEQR 508 (568)
T ss_pred CHH-H-HHHHHHHHHHHHHHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcC-CEEEEEEcCC-HHHHHHh
Confidence 000 0 000121111233567888999998853 23344454433 2468999987 6666543
No 50
>PRK08118 topology modulation protein; Reviewed
Probab=97.99 E-value=5.9e-05 Score=63.89 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+.|+|+||+|||||||++.|.+..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999874
No 51
>PRK08233 hypothetical protein; Provisional
Probab=97.98 E-value=5.1e-05 Score=63.62 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+.+|+|.|++|||||||++.|+...+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998765
No 52
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=4.1e-06 Score=77.76 Aligned_cols=98 Identities=18% Similarity=0.201 Sum_probs=68.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCC-c-------cccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeee
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDK-F-------TQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGE 181 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~-f-------~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~ 181 (264)
.++++|+||++||||.|+-.|++..+.- . -.-+...|.+|...|..|+.||.++.-...+.....+|.+.
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~-- 80 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRD-- 80 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHHHH--
Confidence 3789999999999999999999987631 0 01123468888888999999998875554443334444332
Q ss_pred ecCceecCCHHHHHHHHHcCCeEEEEcCH-HHHHHHh
Q psy14166 182 YKGHLYGTSSDSVLELVNSGRVAVLNPAY-QSLKVLR 217 (264)
Q Consensus 182 ~~g~~YGt~~~si~~vl~~Gki~vld~~~-~~~~~Lr 217 (264)
-...|.++.+.||+.|+.+-- -.++.|-
T Consensus 81 --------a~~~i~~i~~rgk~pIlVGGTglY~~aL~ 109 (308)
T COG0324 81 --------ALAAIDDILARGKLPILVGGTGLYLKALL 109 (308)
T ss_pred --------HHHHHHHHHhCCCCcEEEccHHHHHHHHH
Confidence 256888999999998777653 4455554
No 53
>PRK06696 uridine kinase; Validated
Probab=97.96 E-value=9e-06 Score=71.64 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+|+|.|+||||||||++.|++..+
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999998754
No 54
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.96 E-value=1.1e-05 Score=68.12 Aligned_cols=25 Identities=12% Similarity=0.365 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.++|+|+||+||||||+++.|++.+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999764
No 55
>PRK13946 shikimate kinase; Provisional
Probab=97.96 E-value=3.6e-05 Score=65.86 Aligned_cols=26 Identities=42% Similarity=0.650 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
..+.|+|+|++||||||+.+.|++..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34789999999999999999999874
No 56
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.94 E-value=3.6e-05 Score=63.80 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+..|+|+|++|||||||++.|++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 47999999999999999999998753
No 57
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.94 E-value=1.7e-05 Score=68.18 Aligned_cols=111 Identities=19% Similarity=0.302 Sum_probs=68.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHHH---cCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLIS---AGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i~---~~~flE~~~~~ 183 (264)
+|..++|+||||+|||||.+.++...+ |..|+ ..|.+|.-.+.++|.+.+. +..-+.-++..
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Lis-------------p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLIS-------------PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhccC-------------CCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 568999999999999999999998765 33444 3678888888888887652 22222223334
Q ss_pred Ccee--------cCCHHHHHHHHH-cCCe-EEEEc--------CHHHHHHHhcCCCCcEEEEEeCCC
Q psy14166 184 GHLY--------GTSSDSVLELVN-SGRV-AVLNP--------AYQSLKVLRSPAFKPLVLFIAPPP 232 (264)
Q Consensus 184 g~~Y--------Gt~~~si~~vl~-~Gki-~vld~--------~~~~~~~Lr~~~~~p~vIfI~pps 232 (264)
+|+. .+..+...+.++ .+.. -+|+- +.|-+-.+|+..+.|-+..++.+.
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 4421 222333333333 2211 12222 234566777888899999888764
No 58
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.93 E-value=4.3e-05 Score=62.35 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.|+|+|++|+|||||++.|++...
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 379999999999999999997753
No 59
>PRK13949 shikimate kinase; Provisional
Probab=97.93 E-value=4.1e-05 Score=64.98 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+.|+|+|++|||||||.+.|++..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999874
No 60
>PRK14530 adenylate kinase; Provisional
Probab=97.93 E-value=3.8e-05 Score=67.18 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++.|+|+||+||||||+++.|++.+.
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998764
No 61
>PRK04040 adenylate kinase; Provisional
Probab=97.89 E-value=6.3e-05 Score=65.01 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=23.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++|+|+|++||||||+++.|++..+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 6899999999999999999998875
No 62
>PRK14532 adenylate kinase; Provisional
Probab=97.89 E-value=4e-05 Score=65.22 Aligned_cols=24 Identities=25% Similarity=0.578 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.|+|+||+||||||+++.|++.+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 388999999999999999998764
No 63
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.89 E-value=1.4e-05 Score=78.64 Aligned_cols=78 Identities=19% Similarity=0.274 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHH---HHcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSL---ISAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~---i~~~~flE~~~~~ 183 (264)
+|..++|+||||+|||||++.|.+.++ |..|+ .+|.+..-+ .+.+.+. +.++.++..++..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~-------------p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~ 425 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLD-------------PLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVR 425 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC-------------CCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHH
Confidence 579999999999999999999998764 33343 467766555 5555544 3577888888887
Q ss_pred Cc-eecC---CHHHHHHHHHc
Q psy14166 184 GH-LYGT---SSDSVLELVNS 200 (264)
Q Consensus 184 g~-~YGt---~~~si~~vl~~ 200 (264)
+| .||. +.+.+.++++.
T Consensus 426 eNI~~g~~~~~~e~i~~al~~ 446 (529)
T TIGR02868 426 DNLRLGRPDATDEELWAALER 446 (529)
T ss_pred HHHhccCCCCCHHHHHHHHHH
Confidence 77 4553 34566666653
No 64
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.88 E-value=5.2e-06 Score=74.59 Aligned_cols=88 Identities=24% Similarity=0.262 Sum_probs=52.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccc-------cccCCCCCCCCCCC--------c---ceeecCHHHHHHHH
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVT-------PYTTRPKKPGEEDG--------K---EYHFVSHETMTSLI 171 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v-------~~TTR~~r~gE~~G--------~---dY~fvs~~~f~~~i 171 (264)
.++++|+|+||||||||+|.|.......- ..+ .||||.......+| . +...++.+++
T Consensus 120 ~~~~~~~G~sgvGKStLiN~L~~~~~~~t-~~i~~~~~~G~hTT~~~~l~~l~~~~liDtPG~~~~~l~~~~~~~~---- 194 (245)
T TIGR00157 120 NRISVFAGQSGVGKSSLINALDPSVKQQV-NDISSKLGLGKHTTTHVELFHFHGGLIADTPGFNEFGLWHLEPEQL---- 194 (245)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhhhccc-cceeccCCCCCCcCCceEEEEcCCcEEEeCCCccccCCCCCCHHHH----
Confidence 37999999999999999999997632211 122 47888764333322 1 1112232222
Q ss_pred HcCCcceeeeecC-------ceecCCHHHHHHHHHcCCe
Q psy14166 172 SAGKMIEFGEYKG-------HLYGTSSDSVLELVNSGRV 203 (264)
Q Consensus 172 ~~~~flE~~~~~g-------~~YGt~~~si~~vl~~Gki 203 (264)
...|.|..++.+ .+-..+.++|++++++|.+
T Consensus 195 -~~~f~e~~~~~~~C~f~~C~H~~ep~C~v~~a~~~g~i 232 (245)
T TIGR00157 195 -TQGFVEFRDYLGECKFRDCLHQSEPGCAVRQAVEQGEI 232 (245)
T ss_pred -HHhCHHHHHHhCCCCCCCCccCCCCCChHHHHHHcCCC
Confidence 223333332222 1456778999999999975
No 65
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.85 E-value=8.9e-05 Score=73.67 Aligned_cols=89 Identities=17% Similarity=0.302 Sum_probs=61.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG 188 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG 188 (264)
.+.+|+++|++||||||+++.++.... |..++.+.+.. |-
T Consensus 368 ~p~LVil~G~pGSGKST~A~~l~~~~g-----------------------~~~vn~D~lg~-----------------~~ 407 (526)
T TIGR01663 368 PCEMVIAVGFPGAGKSHFCKKFFQPAG-----------------------YKHVNADTLGS-----------------TQ 407 (526)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHcC-----------------------CeEECcHHHHH-----------------HH
Confidence 568999999999999999999886521 22344443321 11
Q ss_pred CCHHHHHHHHHcCCeEEEEcCH-------HHHHHHhcCCCCcEEEEEeCCChHHHHH
Q psy14166 189 TSSDSVLELVNSGRVAVLNPAY-------QSLKVLRSPAFKPLVLFIAPPPFAALKE 238 (264)
Q Consensus 189 t~~~si~~vl~~Gki~vld~~~-------~~~~~Lr~~~~~p~vIfI~pps~e~l~~ 238 (264)
.-...+++.+++|+.+|+|... ..++..+..+....+||+..| .+++++
T Consensus 408 ~~~~~a~~~L~~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p-~e~~~~ 463 (526)
T TIGR01663 408 NCLTACERALDQGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAP-LAQAKH 463 (526)
T ss_pred HHHHHHHHHHhCCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCC-HHHHHH
Confidence 1235678899999999999763 234555567777888999987 455443
No 66
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.85 E-value=3.1e-05 Score=70.82 Aligned_cols=106 Identities=14% Similarity=0.224 Sum_probs=60.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTS 190 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~ 190 (264)
++|+|+|.|||||||+++.|.+...+ .+.+.+.++.+.+. +..+.|... ......-|.-
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~------------------~~~~v~~i~~~~~~--~~~~~y~~~-~~Ek~~R~~l 60 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE------------------KGKEVVIISDDSLG--IDRNDYADS-KKEKEARGSL 60 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH------------------TT--EEEE-THHHH---TTSSS--G-GGHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh------------------cCCEEEEEcccccc--cchhhhhch-hhhHHHHHHH
Confidence 48999999999999999999986432 23445556655554 333333211 1122344556
Q ss_pred HHHHHHHHHcCCeEEEEcCH-------HHHHHHhcCCCCcEEEEEeCCChHHHHH
Q psy14166 191 SDSVLELVNSGRVAVLNPAY-------QSLKVLRSPAFKPLVLFIAPPPFAALKE 238 (264)
Q Consensus 191 ~~si~~vl~~Gki~vld~~~-------~~~~~Lr~~~~~p~vIfI~pps~e~l~~ 238 (264)
...|...+..+.++|+|... +.....|.....-.+||+..| .|...+
T Consensus 61 ~s~v~r~ls~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~-~e~~~~ 114 (270)
T PF08433_consen 61 KSAVERALSKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCP-LETCLQ 114 (270)
T ss_dssp HHHHHHHHTT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHH
T ss_pred HHHHHHhhccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCC-HHHHHH
Confidence 67888889999999999774 344555566666678999998 444443
No 67
>PRK13947 shikimate kinase; Provisional
Probab=97.85 E-value=4e-05 Score=63.99 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.|+|+|++||||||+++.|++...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998753
No 68
>PRK06547 hypothetical protein; Provisional
Probab=97.83 E-value=5.9e-05 Score=64.37 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
...+|+|.|+||||||||++.|++..
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34688888999999999999999864
No 69
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.83 E-value=5.4e-05 Score=63.87 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+|+|+|++||||||+++.|.....
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999987653
No 70
>PRK03839 putative kinase; Provisional
Probab=97.83 E-value=9.7e-05 Score=62.51 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.|+|+|++||||||+.+.|++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 71
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.82 E-value=2.2e-05 Score=70.70 Aligned_cols=28 Identities=36% Similarity=0.587 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+|+|+||||||||||++.++.....
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5799999999999999999999998643
No 72
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.80 E-value=5.7e-05 Score=65.48 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+|+|.|+||||||||++.|++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998864
No 73
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.80 E-value=3.1e-05 Score=77.02 Aligned_cols=78 Identities=26% Similarity=0.428 Sum_probs=58.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~ 183 (264)
++..++|+||||||||||++.|...+. |..|+ +||.|..-++.....+.+ .++.++..++..
T Consensus 354 ~Ge~vaiVG~sGsGKSTl~~LL~r~~~-------------~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~ 420 (567)
T COG1132 354 PGEKVAIVGPSGSGKSTLIKLLLRLYD-------------PTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIR 420 (567)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC-------------CCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHH
Confidence 568999999999999999999998764 23333 478888878888777764 477888888887
Q ss_pred Cc-eecC---CHHHHHHHHH
Q psy14166 184 GH-LYGT---SSDSVLELVN 199 (264)
Q Consensus 184 g~-~YGt---~~~si~~vl~ 199 (264)
.| .||. +.+.+.++++
T Consensus 421 ~NI~~g~~~at~eei~~a~k 440 (567)
T COG1132 421 ENIALGRPDATDEEIEEALK 440 (567)
T ss_pred HHHhcCCCCCCHHHHHHHHH
Confidence 77 5884 3455655555
No 74
>PRK13948 shikimate kinase; Provisional
Probab=97.79 E-value=9.3e-05 Score=63.82 Aligned_cols=26 Identities=27% Similarity=0.182 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+..|+|+|.+||||||+.+.|++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 34799999999999999999999864
No 75
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.79 E-value=0.00025 Score=60.19 Aligned_cols=24 Identities=38% Similarity=0.699 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+.|+|+|++|+|||||++.|+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 679999999999999999999874
No 76
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.78 E-value=3.7e-05 Score=66.08 Aligned_cols=111 Identities=19% Similarity=0.269 Sum_probs=57.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCC--CCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTR--PKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGT 189 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR--~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt 189 (264)
.|+|+|||||||||+++.|++.++ ++|.+. --+.+-..+.+. ..+....+.+|+++.. +.+.++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~------i~hlstgd~~r~~~~~~t~l----g~~~k~~i~~g~lv~d----~i~~~~ 67 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG------LPHLDTGDILRAAIAERTEL----GEEIKKYIDKGELVPD----EIVNGL 67 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC------CcEEcHhHHhHhhhccCChH----HHHHHHHHHcCCccch----HHHHHH
Confidence 589999999999999999999843 333221 001111111111 0112223455554432 122244
Q ss_pred CHHHHHHHHHcCCeEEEEcCHHHHHHHh-------cCCC-CcEEEEEeCCChHHHHH
Q psy14166 190 SSDSVLELVNSGRVAVLNPAYQSLKVLR-------SPAF-KPLVLFIAPPPFAALKE 238 (264)
Q Consensus 190 ~~~si~~vl~~Gki~vld~~~~~~~~Lr-------~~~~-~p~vIfI~pps~e~l~~ 238 (264)
-.+.+.+. .....+|+|.-|..+.+++ ..+. ..+++.+..|. +.+-+
T Consensus 68 v~~rl~~~-d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~-~~~~~ 122 (178)
T COG0563 68 VKERLDEA-DCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPE-ELLLE 122 (178)
T ss_pred HHHHHHhh-cccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCH-HHHHH
Confidence 33444333 2112688888875433333 2222 35789999986 44443
No 77
>PRK14527 adenylate kinase; Provisional
Probab=97.78 E-value=8.4e-05 Score=63.73 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+|+|+||+||||||+++.|++.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999775
No 78
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.77 E-value=0.00011 Score=62.10 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+|+|+||+||||||+++.|++.+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998764
No 79
>PLN02200 adenylate kinase family protein
Probab=97.77 E-value=0.00017 Score=64.44 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=33.0
Q ss_pred CCCCcchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 91 REEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 91 ~~~~~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
..++++.|++-.-+. +..+.+|+|+|||||||||+++.|++.+.
T Consensus 25 ~~~~~~~~~~~~~~~-~~~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 25 STEIITLEERGSSSK-EKTPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred cccccccccccCCcc-CCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446677777665433 22456889999999999999999998753
No 80
>PRK12288 GTPase RsgA; Reviewed
Probab=97.77 E-value=5.7e-06 Score=78.15 Aligned_cols=87 Identities=23% Similarity=0.316 Sum_probs=51.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCcccccc-------ccCCCCCCCCCC---------Cc---ceeecCHHHHHHHH
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTP-------YTTRPKKPGEED---------GK---EYHFVSHETMTSLI 171 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~-------~TTR~~r~gE~~---------G~---dY~fvs~~~f~~~i 171 (264)
++++|+|+||||||||+|.|+......- ..|+ |||+........ |. +.+.++.+++..
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t-~~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~~~l~~~~~~~l~~-- 282 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAEILV-GDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVREFGLWHLEPEQVTQ-- 282 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccceee-ccccCcCCCCcCceeeEEEEEecCCCEEEECCCCCcccCCCCCHHHHHH--
Confidence 6899999999999999999997643221 2233 788775432221 21 122233333222
Q ss_pred HcCCcceeeee------cC-ceecCCHHHHHHHHHcCCe
Q psy14166 172 SAGKMIEFGEY------KG-HLYGTSSDSVLELVNSGRV 203 (264)
Q Consensus 172 ~~~~flE~~~~------~g-~~YGt~~~si~~vl~~Gki 203 (264)
.|.|..++ .+ .+...+.++|.+++++|.+
T Consensus 283 ---~F~ei~~~~~~CrF~dC~H~~EpgCaV~~Av~~g~i 318 (347)
T PRK12288 283 ---GFVEFRDYLGTCKFRDCKHDDDPGCALREAVEEGKI 318 (347)
T ss_pred ---hhHHHHHHhcCCCCCCCccCCCCCChHHHHHHcCCC
Confidence 22222222 21 1556788999999999985
No 81
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.76 E-value=2.2e-05 Score=73.81 Aligned_cols=59 Identities=27% Similarity=0.389 Sum_probs=39.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCcccc----ccccCCCCCCCCCCCcceeecCHHHHHHH
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQV----TPYTTRPKKPGEEDGKEYHFVSHETMTSL 170 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~----v~~TTR~~r~gE~~G~dY~fvs~~~f~~~ 170 (264)
.+..++|+||||||||||++.|+......=+.. -..|.-+|. .-++.+.|.+...|..|
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~---~R~iamVFQ~yALyPhm 90 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE---KRGIAMVFQNYALYPHM 90 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh---HCCEEEEeCCccccCCC
Confidence 568999999999999999999999854211111 112333442 23567778877766554
No 82
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.76 E-value=3.6e-05 Score=78.35 Aligned_cols=79 Identities=22% Similarity=0.330 Sum_probs=58.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~ 183 (264)
+|..++|+|+||||||||++.|++.++ |..|+ .||.+..-++.+.+.+.+ .++.++..++..
T Consensus 478 ~Ge~vaIvG~sGsGKSTLlklL~gl~~-------------p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~ 544 (686)
T TIGR03797 478 PGEFVAIVGPSGSGKSTLLRLLLGFET-------------PESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIF 544 (686)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-------------CCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHH
Confidence 569999999999999999999998864 33443 578887777777777654 567777777777
Q ss_pred Cce-ec--CCHHHHHHHHHc
Q psy14166 184 GHL-YG--TSSDSVLELVNS 200 (264)
Q Consensus 184 g~~-YG--t~~~si~~vl~~ 200 (264)
+|. +| .+.+.+.++++.
T Consensus 545 eNi~~~~~~~~e~i~~al~~ 564 (686)
T TIGR03797 545 ENIAGGAPLTLDEAWEAARM 564 (686)
T ss_pred HHHhcCCCCCHHHHHHHHHH
Confidence 774 45 345666666653
No 83
>PRK06761 hypothetical protein; Provisional
Probab=97.74 E-value=0.00031 Score=64.70 Aligned_cols=114 Identities=16% Similarity=0.156 Sum_probs=68.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCC--CCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTR--PKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG 188 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR--~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG 188 (264)
++|+|.|++|||||||++.|.+..... +..+..++. .+.+.+..+..+ .+.++|...+.....+.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~-g~~v~~~~~~~~~~p~d~~~~~~--~~~eer~~~l~~~~~f~---------- 70 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN-GIEVELYLEGNLDHPADYDGVAC--FTKEEFDRLLSNYPDFK---------- 70 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC-ceEEEEEecCCCCCchhhccccC--CCHHHHHHHHHhhhHHH----------
Confidence 689999999999999999999886532 223332222 224445555444 48888888775543321
Q ss_pred CCHHHHHHHHHcCCeEEEEcCH---HHHHHHhcCCCCc-EEEEEeCCChHHHHHH
Q psy14166 189 TSSDSVLELVNSGRVAVLNPAY---QSLKVLRSPAFKP-LVLFIAPPPFAALKES 239 (264)
Q Consensus 189 t~~~si~~vl~~Gki~vld~~~---~~~~~Lr~~~~~p-~vIfI~pps~e~l~~~ 239 (264)
..-+++.++.|..+|+...- .....++...+.+ .+-|+..-+.|.++++
T Consensus 71 --~~l~~~~~~~g~~~i~~~~~l~~~yr~~~~~~~~~~~~v~~~h~~p~e~i~~R 123 (282)
T PRK06761 71 --EVLLKNVLKKGDYYLLPYRKIKNEFGDQFSDELFNDISKNDIYELPFDKNTEL 123 (282)
T ss_pred --HHHHHHHHHcCCeEEEEehhhhHHHhhhhhhhhcccceeeeeecCCHHHHHHH
Confidence 34556677788776655542 2234455433332 2444445557777654
No 84
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.74 E-value=0.00014 Score=63.39 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+.+|+|.|+|||||||+++.|+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999875
No 85
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=5.2e-05 Score=75.14 Aligned_cols=79 Identities=20% Similarity=0.352 Sum_probs=60.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHH---HHcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSL---ISAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~---i~~~~flE~~~~~ 183 (264)
+++.++|+|+||+|||||++.|++..+. ..|| +||.+-.-++.+.+.+. +.++.++..++..
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~~-------------~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTir 412 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLAP-------------TQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIR 412 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcCCC-------------CCceEEECCccccccCHHHHHhHeeeeCCCCccccccHH
Confidence 5799999999999999999999988753 3343 57777777788888776 4688899999988
Q ss_pred Cce-ec---CCHHHHHHHHHc
Q psy14166 184 GHL-YG---TSSDSVLELVNS 200 (264)
Q Consensus 184 g~~-YG---t~~~si~~vl~~ 200 (264)
+|. .| .+.+.+.+++++
T Consensus 413 eNi~l~~~~~s~e~i~~al~~ 433 (559)
T COG4988 413 ENILLARPDASDEEIIAALDQ 433 (559)
T ss_pred HHhhccCCcCCHHHHHHHHHH
Confidence 883 23 345677777664
No 86
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.73 E-value=4.8e-05 Score=67.84 Aligned_cols=26 Identities=42% Similarity=0.589 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
++..++|+||||||||||++.|...+
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 57999999999999999999998765
No 87
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.73 E-value=2.5e-05 Score=65.92 Aligned_cols=109 Identities=13% Similarity=0.168 Sum_probs=54.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcC-CcceeeeecCceec
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAG-KMIEFGEYKGHLYG 188 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~-~flE~~~~~g~~YG 188 (264)
+-+|.|+|.||+|||||++.|....-+ .|....+++-+.+...+..+ .|-. .....|..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~------------------~g~~~~~LDgD~lR~~l~~dl~fs~-~dR~e~~r- 61 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFA------------------RGIKVYLLDGDNLRHGLNADLGFSK-EDREENIR- 61 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHH------------------TTS-EEEEEHHHHCTTTTTT--SSH-HHHHHHHH-
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH------------------cCCcEEEecCcchhhccCCCCCCCH-HHHHHHHH-
Confidence 468999999999999999999876421 12222333333332221111 0000 00000100
Q ss_pred CCHHHHHHHHHcCCeEEEEcC-H--HHHHHHhcCCC--CcEEEEEeCCChHHHHHH
Q psy14166 189 TSSDSVLELVNSGRVAVLNPA-Y--QSLKVLRSPAF--KPLVLFIAPPPFAALKES 239 (264)
Q Consensus 189 t~~~si~~vl~~Gki~vld~~-~--~~~~~Lr~~~~--~p~vIfI~pps~e~l~~~ 239 (264)
.-.+-..-..++|.+||+..- | +....+|..-- .-+-|||++| +++++++
T Consensus 62 r~~~~A~ll~~~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~-~e~~~~R 116 (156)
T PF01583_consen 62 RIAEVAKLLADQGIIVIVAFISPYREDREWARELIPNERFIEVYVDCP-LEVCRKR 116 (156)
T ss_dssp HHHHHHHHHHHTTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES--HHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCC-HHHHHHh
Confidence 001233456679998887744 3 44555553211 3467999997 6666653
No 88
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.72 E-value=5e-05 Score=75.62 Aligned_cols=78 Identities=21% Similarity=0.291 Sum_probs=54.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHH---HHcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSL---ISAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~---i~~~~flE~~~~~ 183 (264)
++..++|+|+||+|||||++.|.+.++. ..|+ .+|.++.-++.+.+.+. +.++.++..++..
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl~~p-------------~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~ 434 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRFYDI-------------DEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIA 434 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC-------------CCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHH
Confidence 5689999999999999999999998653 2333 46777666666666654 3567777777777
Q ss_pred Cc-eecC----CHHHHHHHHH
Q psy14166 184 GH-LYGT----SSDSVLELVN 199 (264)
Q Consensus 184 g~-~YGt----~~~si~~vl~ 199 (264)
.| .+|. +.+.+.++++
T Consensus 435 ~Ni~~~~~~~~~~~~i~~al~ 455 (582)
T PRK11176 435 NNIAYARTEQYSREQIEEAAR 455 (582)
T ss_pred HHHhcCCCCCCCHHHHHHHHH
Confidence 66 3442 3455555544
No 89
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.70 E-value=5.3e-05 Score=83.37 Aligned_cols=92 Identities=17% Similarity=0.196 Sum_probs=67.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCc-----------------------------------------cccccccCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKF-----------------------------------------TQVTPYTTR 147 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f-----------------------------------------~~~v~~TTR 147 (264)
++..++|+||||||||||++.|.+.+.... ...-+.+|+
T Consensus 1193 ~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1272 (1466)
T PTZ00265 1193 SKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTV 1272 (1466)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 569999999999999999999999865310 011223566
Q ss_pred CCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeecCc-eecC---CHHHHHHHHHc
Q psy14166 148 PKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYKGH-LYGT---SSDSVLELVNS 200 (264)
Q Consensus 148 ~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~g~-~YGt---~~~si~~vl~~ 200 (264)
.|..|+ ++|.|..-++...+...+ .+..++..++..+| .||. +.+.|.++++.
T Consensus 1273 ~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~ 1334 (1466)
T PTZ00265 1273 FKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKF 1334 (1466)
T ss_pred CCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHH
Confidence 677777 488888878877777654 68888888988888 5773 45666666553
No 90
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.69 E-value=4.8e-05 Score=77.98 Aligned_cols=78 Identities=22% Similarity=0.356 Sum_probs=55.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~ 183 (264)
+|..++|+||||+|||||++.|.+.++ |..|+ +||.+..-++.+.+.+.+ .++.++..++..
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL~gl~~-------------p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIr 572 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALLQNLYQ-------------PTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVR 572 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC-------------CCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHH
Confidence 569999999999999999999998865 33343 577776666666665543 466777777777
Q ss_pred Cc-eecC---CHHHHHHHHH
Q psy14166 184 GH-LYGT---SSDSVLELVN 199 (264)
Q Consensus 184 g~-~YGt---~~~si~~vl~ 199 (264)
+| .||. +.+.+.++++
T Consensus 573 eNI~~g~~~~~~e~i~~al~ 592 (711)
T TIGR00958 573 ENIAYGLTDTPDEEIMAAAK 592 (711)
T ss_pred HHHhcCCCCCCHHHHHHHHH
Confidence 77 4563 3455655554
No 91
>KOG0058|consensus
Probab=97.69 E-value=2.5e-05 Score=79.12 Aligned_cols=70 Identities=23% Similarity=0.399 Sum_probs=49.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHH---HHcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSL---ISAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~---i~~~~flE~~~~~ 183 (264)
+|+.++|+||||+||||+++.|.+.+. |..|. +||+|..-++..-..+. +.+...+..++..
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~rfY~-------------PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~ 559 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLRFYD-------------PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIR 559 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC-------------CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHH
Confidence 468999999999999999999988764 33343 57777666666656554 3455666666666
Q ss_pred Cc-eecCCH
Q psy14166 184 GH-LYGTSS 191 (264)
Q Consensus 184 g~-~YGt~~ 191 (264)
+| .||...
T Consensus 560 eNI~YG~~~ 568 (716)
T KOG0058|consen 560 ENIAYGLDN 568 (716)
T ss_pred HHHhcCCCC
Confidence 66 677654
No 92
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.69 E-value=9.2e-05 Score=61.98 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
..|+|+|++||||||+++.|++..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999874
No 93
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.69 E-value=0.00046 Score=58.08 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=17.9
Q ss_pred EcCCCCCHHHHHHHHHhcCC
Q psy14166 116 IGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 116 iGpsGvGKsTL~~~L~~~~p 135 (264)
+|+||+|||||++.|+....
T Consensus 1 ~G~sGsGKSTla~~la~~l~ 20 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLH 20 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhC
Confidence 69999999999999998753
No 94
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.68 E-value=0.00015 Score=62.75 Aligned_cols=108 Identities=14% Similarity=0.270 Sum_probs=52.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC-CCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHH--cCCcceeeeecCc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD-PDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLIS--AGKMIEFGEYKGH 185 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~-p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~--~~~flE~~~~~g~ 185 (264)
.+..++|.|++||||||+++.+.... ...+...-+..-|. ++ ..+..... ...+.......
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~----------~~----p~~~~~~~~~~~~~~~~~~~~-- 77 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ----------FH----PDYDELLKADPDEASELTQKE-- 77 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG----------GS----TTHHHHHHHHCCCTHHHHHHH--
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH----------hc----cchhhhhhhhhhhhHHHHHHH--
Confidence 56788999999999999999998875 21111111111010 11 01111111 01110000000
Q ss_pred eecCCHHHHHHHHHcCCeEEEEcCH---H----HHHHHhcCCCCcEEEEEeCCC
Q psy14166 186 LYGTSSDSVLELVNSGRVAVLNPAY---Q----SLKVLRSPAFKPLVLFIAPPP 232 (264)
Q Consensus 186 ~YGt~~~si~~vl~~Gki~vld~~~---~----~~~~Lr~~~~~p~vIfI~pps 232 (264)
..-.....+..+++++..+|++... . .++.++..+++..++||..|.
T Consensus 78 a~~~~~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~ 131 (199)
T PF06414_consen 78 ASRLAEKLIEYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPP 131 (199)
T ss_dssp HHHHHHHHHHHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---H
T ss_pred HHHHHHHHHHHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCH
Confidence 0001124567788999999999764 2 456778899999999999874
No 95
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.67 E-value=0.00013 Score=63.34 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=24.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++.+|+|+|+||||||||++.|.+..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457999999999999999999998763
No 96
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.67 E-value=0.00013 Score=60.58 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+|+|.|++||||||+++.|++..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998864
No 97
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.67 E-value=5.8e-05 Score=75.31 Aligned_cols=80 Identities=20% Similarity=0.399 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHH---HcCCcceeeeecCc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLI---SAGKMIEFGEYKGH 185 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~g~ 185 (264)
+|..++|+||||+|||||++.|.+.+|. ...| ..+|.+..-++.+.+.+.+ .++.++..++..+|
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~p~--~G~I----------~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eN 442 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFLPY--QGSL----------KINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDN 442 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC--CcEE----------EECCEecccCCHHHHHhheEEecCCCcCCCcCHHHH
Confidence 5799999999999999999999987742 1111 2477777777777777653 57888888888887
Q ss_pred -eecC---CHHHHHHHHHc
Q psy14166 186 -LYGT---SSDSVLELVNS 200 (264)
Q Consensus 186 -~YGt---~~~si~~vl~~ 200 (264)
.||. +.+.+.++++.
T Consensus 443 I~~g~~~~~~eei~~al~~ 461 (588)
T PRK11174 443 VLLGNPDASDEQLQQALEN 461 (588)
T ss_pred hhcCCCCCCHHHHHHHHHH
Confidence 4663 34566665553
No 98
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.65 E-value=0.00019 Score=72.21 Aligned_cols=149 Identities=17% Similarity=0.182 Sum_probs=74.1
Q ss_pred CCCCCCCCCcchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCH-
Q psy14166 86 TDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSH- 164 (264)
Q Consensus 86 ~~~~~~~~~~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~- 164 (264)
.-+||..-.++-.-...+........+|+|.||||||||||++.|+...|.. ..|+.-.-..... ..+|.|-+.
T Consensus 41 ~~sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp~v--gvIsmDdy~~~~~---~i~~nfD~P~ 115 (656)
T PLN02318 41 PLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSI--AVISMDNYNDSSR---IIDGNFDDPR 115 (656)
T ss_pred ccccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCCCc--EEEEEcceecchh---hhCccCCChh
Confidence 4467765554333222222222234689999999999999999999887641 1222100000000 111222222
Q ss_pred ----HHHHH---HHHcCCcceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCC-hHHH
Q psy14166 165 ----ETMTS---LISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPP-FAAL 236 (264)
Q Consensus 165 ----~~f~~---~i~~~~flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps-~e~l 236 (264)
+.+.+ .+.+|.-+++-.|+ .--+.....-...+....++|+++-......|+ .+..+.|||+.|. ...+
T Consensus 116 a~D~d~L~enL~~Lr~GksV~iPiYD-f~t~~r~~~~~i~v~p~~VVIVEGIyaL~~~Lr--~LlDlkIFVDtdvDirL~ 192 (656)
T PLN02318 116 LTDYDTLLDNIHDLKAGKSVQVPIYD-FKSSSRVGYRTLEVPSSRIVIIEGIYALSEKLR--PLLDLRVSVTGGVHFDLV 192 (656)
T ss_pred hcchhHHHHHHHHHhCCCceecCccc-cccCcccCCceeecCCCcEEEEechhhccHhHH--hhCCEEEEEcCCccHHHH
Confidence 22222 23455444433322 111111100011244677888898886656554 4557899999774 4434
Q ss_pred HHHHHh
Q psy14166 237 KESRIT 242 (264)
Q Consensus 237 ~~~r~~ 242 (264)
++..++
T Consensus 193 RRI~RD 198 (656)
T PLN02318 193 KRVLRD 198 (656)
T ss_pred HHHHHH
Confidence 433333
No 99
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.64 E-value=0.00013 Score=62.76 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+|.|+||||||||||++.|....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 100
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.64 E-value=5.5e-05 Score=77.25 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~ 183 (264)
+|..++|+||||+|||||++.|++.++ |..|+ .||.+..-++.+.+.+.+ .++.++..++..
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlklL~gl~~-------------p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~ 570 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAKLVAGLYQ-------------PWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVR 570 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC-------------CCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHH
Confidence 569999999999999999999998865 33343 477777666766666654 466777777777
Q ss_pred Cce-ec---CCHHHHHHHHH
Q psy14166 184 GHL-YG---TSSDSVLELVN 199 (264)
Q Consensus 184 g~~-YG---t~~~si~~vl~ 199 (264)
+|. +| .+.+.+.++++
T Consensus 571 eNi~l~~~~~~~~~i~~al~ 590 (710)
T TIGR03796 571 DNLTLWDPTIPDADLVRACK 590 (710)
T ss_pred HHhhCCCCCCCHHHHHHHHH
Confidence 774 44 23455555544
No 101
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.64 E-value=3.5e-05 Score=72.91 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=41.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCcccc----ccccCCCCCCCCCCCcceeecCHHHHHHH
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQV----TPYTTRPKKPGEEDGKEYHFVSHETMTSL 170 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~----v~~TTR~~r~gE~~G~dY~fvs~~~f~~~ 170 (264)
.+.+++|+||||||||||++.|+......-+.+ ...|.-|| +.-++.+.|.+.+.|..|
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp---~kR~ig~VFQ~YALFPHl 92 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP---EKRPIGMVFQSYALFPHM 92 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh---hhcccceeecCcccCCCC
Confidence 568999999999999999999999753322211 12233343 344677888888877665
No 102
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.64 E-value=0.00017 Score=52.09 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+|+|+|++|+||||+++.|....
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999874
No 103
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.63 E-value=4.4e-05 Score=59.93 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+|+|+|||||||||+++.|++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999874
No 104
>PRK04182 cytidylate kinase; Provisional
Probab=97.62 E-value=0.00015 Score=60.53 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+|+|+|++||||||+++.|++..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999764
No 105
>PRK00625 shikimate kinase; Provisional
Probab=97.61 E-value=0.0002 Score=61.18 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.|+|+|.+||||||+.+.|++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998874
No 106
>PRK14531 adenylate kinase; Provisional
Probab=97.60 E-value=0.00026 Score=60.39 Aligned_cols=24 Identities=29% Similarity=0.646 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+.|+|+||+||||||+.+.|++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999875
No 107
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.60 E-value=6.2e-05 Score=76.88 Aligned_cols=78 Identities=23% Similarity=0.380 Sum_probs=53.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~ 183 (264)
+|..++|+||||+|||||++.|++.++ |..|+ +||.+..-++.+.+.+.+ .++.++..++..
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~gl~~-------------p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~ 565 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVGFFQ-------------ARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSIL 565 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC-------------CCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHH
Confidence 569999999999999999999998864 23343 477776666766666543 466677777766
Q ss_pred Cce-ec----CCHHHHHHHHH
Q psy14166 184 GHL-YG----TSSDSVLELVN 199 (264)
Q Consensus 184 g~~-YG----t~~~si~~vl~ 199 (264)
+|. +| .+.+.+.++++
T Consensus 566 eNi~l~~~~~~~~~~i~~a~~ 586 (708)
T TIGR01193 566 ENLLLGAKENVSQDEIWAACE 586 (708)
T ss_pred HHHhccCCCCCCHHHHHHHHH
Confidence 663 44 23445555544
No 108
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.59 E-value=7.7e-05 Score=64.91 Aligned_cols=42 Identities=24% Similarity=0.421 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCcccc----ccccCCCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQV----TPYTTRPKK 150 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~----v~~TTR~~r 150 (264)
.+.+++|+||||+|||||+|.++...-...+.. +.||..+|-
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~ 69 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA 69 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc
Confidence 578999999999999999999998743223332 346666663
No 109
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.59 E-value=4.4e-05 Score=78.32 Aligned_cols=111 Identities=20% Similarity=0.367 Sum_probs=76.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~ 183 (264)
.+..|+|+|+||||||||++.|.+.+. |..|+ .||.|-.-++...+.+.+ .++.++.+++..
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~-------------p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~ 564 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYK-------------PQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIR 564 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC-------------CCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHH
Confidence 468999999999999999999998864 33343 688888888988888864 688899999888
Q ss_pred Cce-ec---CCHHHHHHHHH-cCCeEEEE-------------------cCHHHHHHHhcCCCCcEEEEEeCCC
Q psy14166 184 GHL-YG---TSSDSVLELVN-SGRVAVLN-------------------PAYQSLKVLRSPAFKPLVLFIAPPP 232 (264)
Q Consensus 184 g~~-YG---t~~~si~~vl~-~Gki~vld-------------------~~~~~~~~Lr~~~~~p~vIfI~pps 232 (264)
+|. .| .+.+.+.++.. .|-.-.+. +..|-+...|.---+|.++.++.|+
T Consensus 565 eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaT 637 (709)
T COG2274 565 ENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEAT 637 (709)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcc
Confidence 773 22 23334433333 33221111 1123455556666689999998874
No 110
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.59 E-value=7e-05 Score=68.05 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|||||||++.|....+
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 469999999999999999999998654
No 111
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.58 E-value=0.00013 Score=63.61 Aligned_cols=22 Identities=32% Similarity=0.672 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhcC
Q psy14166 113 VVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 113 ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
|+|+||+||||||++..|++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999875
No 112
>PLN02924 thymidylate kinase
Probab=97.58 E-value=0.0004 Score=61.57 Aligned_cols=118 Identities=15% Similarity=0.120 Sum_probs=62.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcc----eeeeecC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMI----EFGEYKG 184 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~fl----E~~~~~g 184 (264)
.+.+|+|-|..||||||+++.|.+..... +..+ .+||.|..+...|. .....+..+.-+ +..-|..
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~-g~~v-~~~~ep~~~~~~g~--------~ir~~l~~~~~~~~~~~~llf~a 84 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKGL-GVAA-ELWRFPDRTTSVGQ--------MISAYLSNKSQLDDRAIHLLFSA 84 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCc-eeeeCCCCCChHHH--------HHHHHHhCCCCCCHHHHHHHHHH
Confidence 57899999999999999999999876432 2233 35565542211111 111111111000 0000000
Q ss_pred ceecCCHHHHHHHHHcCCeEEEEcCHH---H-----------HHHHhcCCCCc-EEEEEeCCChHHHHH
Q psy14166 185 HLYGTSSDSVLELVNSGRVAVLNPAYQ---S-----------LKVLRSPAFKP-LVLFIAPPPFAALKE 238 (264)
Q Consensus 185 ~~YGt~~~si~~vl~~Gki~vld~~~~---~-----------~~~Lr~~~~~p-~vIfI~pps~e~l~~ 238 (264)
+.+- ..+.|...+++|+++|+|--.. + +..+....+.| .+||++.| ++...+
T Consensus 85 dR~~-~~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~-~~~a~~ 151 (220)
T PLN02924 85 NRWE-KRSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDIS-PEEAAE 151 (220)
T ss_pred HHHH-HHHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCC-HHHHHH
Confidence 1111 1355788889999999986542 1 12222223456 67888876 555544
No 113
>PRK01184 hypothetical protein; Provisional
Probab=97.58 E-value=0.00054 Score=58.06 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=18.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+|+|+||+||||||+.+ +++.+
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~ 24 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREM 24 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHc
Confidence 479999999999999986 55543
No 114
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.56 E-value=7e-05 Score=68.79 Aligned_cols=94 Identities=18% Similarity=0.207 Sum_probs=52.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCcccc------ccccCCCCCCCCC---------CCc---ceeecCHHHHHHHH
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQV------TPYTTRPKKPGEE---------DGK---EYHFVSHETMTSLI 171 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~------v~~TTR~~r~gE~---------~G~---dY~fvs~~~f~~~i 171 (264)
++.++|+|+||||||||+|.|.......-+.. -.|||+....-.. .|. +...++.+++....
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~f 240 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLHIDPEELAHYF 240 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCccCCHHHHHHHh
Confidence 37999999999999999999998643221211 1367776522222 122 21234444443321
Q ss_pred Hc-CCcceeeeecC-ceecCCHHHHHHHHHcCCe
Q psy14166 172 SA-GKMIEFGEYKG-HLYGTSSDSVLELVNSGRV 203 (264)
Q Consensus 172 ~~-~~flE~~~~~g-~~YGt~~~si~~vl~~Gki 203 (264)
.. ..+...-.|.+ .+...+.++|++++++|.+
T Consensus 241 ~~~~~~~~~C~F~~C~H~~Ep~Cav~~av~~g~i 274 (287)
T cd01854 241 PEFRELAGQCKFRDCTHTNEPGCAVKAAVEAGEI 274 (287)
T ss_pred HHHHHHhCCCCCCCCcCCCCCCCHHHHHHHcCCC
Confidence 10 00111111121 1455778999999999975
No 115
>COG4639 Predicted kinase [General function prediction only]
Probab=97.55 E-value=0.00036 Score=58.95 Aligned_cols=100 Identities=16% Similarity=0.253 Sum_probs=58.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCc---ee
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGH---LY 187 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~---~Y 187 (264)
.+++|+|+|||||||+++......+ .++.+.|...+-.....|.. .+| ..
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n~~~~~-------------------------~lsld~~r~~lg~~~~~e~s--qk~~~~~~ 55 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKENFLQNY-------------------------VLSLDDLRLLLGVSASKENS--QKNDELVW 55 (168)
T ss_pred eEEEEecCCCCchhHHHHHhCCCcc-------------------------eecHHHHHHHhhhchhhhhc--cccHHHHH
Confidence 6899999999999999876543321 12333333322100000000 000 11
Q ss_pred cCCHHHHHHHHHcCCeEEEEcCH---HHHHHHh----cCCCCcEEEEEeCCChHHHH
Q psy14166 188 GTSSDSVLELVNSGRVAVLNPAY---QSLKVLR----SPAFKPLVLFIAPPPFAALK 237 (264)
Q Consensus 188 Gt~~~si~~vl~~Gki~vld~~~---~~~~~Lr----~~~~~p~vIfI~pps~e~l~ 237 (264)
-......++.++.|+..|.|..- +..+++. ..++.+++|.++-|-.+.++
T Consensus 56 ~~l~~~l~qrl~~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~a 112 (168)
T COG4639 56 DILYKQLEQRLRRGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLA 112 (168)
T ss_pred HHHHHHHHHHHHcCCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHH
Confidence 12234667889999999999874 5444444 46788999999988444443
No 116
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.55 E-value=0.0001 Score=73.64 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=50.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~ 183 (264)
++..++|+|+||+|||||++.|.+.++. ..|+ .+|.+..-++.+.+.+.+ .++.++..++..
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~~p-------------~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~ 426 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVFDP-------------QSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIE 426 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCC-------------CCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHH
Confidence 5699999999999999999999988653 2332 466666666666665543 355566666666
Q ss_pred Cc-eecC---CHHHHHHHH
Q psy14166 184 GH-LYGT---SSDSVLELV 198 (264)
Q Consensus 184 g~-~YGt---~~~si~~vl 198 (264)
+| .||. +.+.+.+++
T Consensus 427 ~Ni~~~~~~~~d~~i~~al 445 (588)
T PRK13657 427 DNIRVGRPDATDEEMRAAA 445 (588)
T ss_pred HHHhcCCCCCCHHHHHHHH
Confidence 66 3442 344444443
No 117
>PRK09087 hypothetical protein; Validated
Probab=97.55 E-value=0.00028 Score=62.74 Aligned_cols=122 Identities=19% Similarity=0.134 Sum_probs=64.8
Q ss_pred chHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHH----H
Q psy14166 96 TYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL----I 171 (264)
Q Consensus 96 ~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~----i 171 (264)
.|.-+...+.. ..+.++|.||+|+|||+|++.+....... +++...|... +
T Consensus 32 a~~~l~~~~~~--~~~~l~l~G~~GsGKThLl~~~~~~~~~~-----------------------~i~~~~~~~~~~~~~ 86 (226)
T PRK09087 32 AVSLVDHWPNW--PSPVVVLAGPVGSGKTHLASIWREKSDAL-----------------------LIHPNEIGSDAANAA 86 (226)
T ss_pred HHHHHHhcccC--CCCeEEEECCCCCCHHHHHHHHHHhcCCE-----------------------EecHHHcchHHHHhh
Confidence 45555543322 24679999999999999999887543211 1122111111 1
Q ss_pred HcCC-cceeeeecCceecCCHHHHHHHHHcCCeEEEEcC--HH----HHHHHhcCCCCcEEEEEeCCChHHHHHHHHh
Q psy14166 172 SAGK-MIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPA--YQ----SLKVLRSPAFKPLVLFIAPPPFAALKESRIT 242 (264)
Q Consensus 172 ~~~~-flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~--~~----~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~~ 242 (264)
.++- .++...+.......-...+..+.+.|+..|+..+ |. ....|++.--...++-|.+|+.+.+.+.-++
T Consensus 87 ~~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 87 AEGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred hcCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 1110 1110000000001112345556667888888776 22 2345665444578899999998777665443
No 118
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.54 E-value=9e-05 Score=75.54 Aligned_cols=78 Identities=21% Similarity=0.388 Sum_probs=50.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~ 183 (264)
+|..++|+|+||+|||||++.|.+.++. ..|+ .||.+..-++...+.+.+ .++.++..++..
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~gl~~p-------------~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~ 556 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLGLYQP-------------TEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLR 556 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC-------------CCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHH
Confidence 5699999999999999999999988652 2333 466665555555555442 355566666666
Q ss_pred Cce-ec---CCHHHHHHHHH
Q psy14166 184 GHL-YG---TSSDSVLELVN 199 (264)
Q Consensus 184 g~~-YG---t~~~si~~vl~ 199 (264)
+|. +| .+.+.+.++++
T Consensus 557 eNi~~~~~~~~~~~i~~a~~ 576 (694)
T TIGR03375 557 DNIALGAPYADDEEILRAAE 576 (694)
T ss_pred HHHhCCCCCCCHHHHHHHHH
Confidence 553 34 23455555444
No 119
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.54 E-value=0.0001 Score=73.66 Aligned_cols=78 Identities=24% Similarity=0.402 Sum_probs=52.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~ 183 (264)
+|..++|+|+||+|||||++.|.+.++. ..|. .||.+..-++.+.+.+.+ .++.++..++..
T Consensus 366 ~Ge~iaIvG~SGsGKSTLl~lL~gl~~p-------------~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~ 432 (592)
T PRK10790 366 SRGFVALVGHTGSGKSTLASLLMGYYPL-------------TEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFL 432 (592)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC-------------CCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHH
Confidence 5799999999999999999999988652 2333 467777666666666653 456666666666
Q ss_pred Cce-ecC--CHHHHHHHHH
Q psy14166 184 GHL-YGT--SSDSVLELVN 199 (264)
Q Consensus 184 g~~-YGt--~~~si~~vl~ 199 (264)
+|. +|. +.+.+.++++
T Consensus 433 ~NI~~~~~~~d~~i~~a~~ 451 (592)
T PRK10790 433 ANVTLGRDISEEQVWQALE 451 (592)
T ss_pred HHHHhCCCCCHHHHHHHHH
Confidence 552 332 3445555544
No 120
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.53 E-value=0.00011 Score=73.35 Aligned_cols=79 Identities=20% Similarity=0.303 Sum_probs=52.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHH---HHcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSL---ISAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~---i~~~~flE~~~~~ 183 (264)
++..++|+||||+|||||++.|.+.++. ..|+ .+|.+..-++.+.+.+. +.+..++..++..
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g~~~p-------------~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 431 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTRAWDP-------------QQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLR 431 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC-------------CCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHH
Confidence 5699999999999999999999988642 2332 46666555565555543 2455666666666
Q ss_pred Cce-ec---CCHHHHHHHHHc
Q psy14166 184 GHL-YG---TSSDSVLELVNS 200 (264)
Q Consensus 184 g~~-YG---t~~~si~~vl~~ 200 (264)
+|. || .+.+.+.++++.
T Consensus 432 ~Ni~~~~~~~~~~~i~~al~~ 452 (574)
T PRK11160 432 DNLLLAAPNASDEALIEVLQQ 452 (574)
T ss_pred HHhhcCCCccCHHHHHHHHHH
Confidence 663 44 244566666654
No 121
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.51 E-value=0.00013 Score=71.84 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=52.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~ 183 (264)
++..++|+||||+|||||++.|.+.++ |..|+ .+|.+..-++.+.+.+.+ .+..++..++..
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g~~~-------------~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~ 413 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLGFVD-------------PTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIA 413 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC-------------CCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHH
Confidence 569999999999999999999998865 23343 366666656666555543 455566666666
Q ss_pred Cce-ecC---CHHHHHHHHHc
Q psy14166 184 GHL-YGT---SSDSVLELVNS 200 (264)
Q Consensus 184 g~~-YGt---~~~si~~vl~~ 200 (264)
+|. +|. +.+.+.++++.
T Consensus 414 ~Ni~~~~~~~~~~~i~~a~~~ 434 (529)
T TIGR02857 414 ENIRLARPDASDAEIRRALER 434 (529)
T ss_pred HHHhccCCCCCHHHHHHHHHH
Confidence 663 332 33455555553
No 122
>KOG1191|consensus
Probab=97.51 E-value=0.0001 Score=71.86 Aligned_cols=90 Identities=18% Similarity=0.197 Sum_probs=63.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCHHHHHHHHHcCCcceeeeecCce
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHL 186 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~ 186 (264)
.+--|+|+|+|+||||+|+|.|....-. ...+++.|||..-+- +++|+....+|.+-+.+ ..++-+|.
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drs-IVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe--~~~~~iE~------- 336 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRS-IVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE--ESNDGIEA------- 336 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCce-EeCCCCCcchhhheeEeecCCeEEEEEecccccc--ccCChhHH-------
Confidence 5678999999999999999999987643 556889999998553 46888888888776665 23333332
Q ss_pred ecCCHHHHHHHHHcCCeEEEEcCH
Q psy14166 187 YGTSSDSVLELVNSGRVAVLNPAY 210 (264)
Q Consensus 187 YGt~~~si~~vl~~Gki~vld~~~ 210 (264)
...+..++.+.+..+|++.+++
T Consensus 337 --~gI~rA~k~~~~advi~~vvda 358 (531)
T KOG1191|consen 337 --LGIERARKRIERADVILLVVDA 358 (531)
T ss_pred --HhHHHHHHHHhhcCEEEEEecc
Confidence 1234445555666666666665
No 123
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.50 E-value=0.00019 Score=72.78 Aligned_cols=111 Identities=10% Similarity=0.114 Sum_probs=63.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG 188 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG 188 (264)
.+.+|+++|.+|+||||+++.|+..... .|..+.+++.+.+...+..+....... ....|.
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~------------------~~~~~~~l~~D~~r~~l~~~~~~~~~~-r~~~~~ 519 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHA------------------LGRHTYLLDGDNVRHGLNRDLGFSDAD-RVENIR 519 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHH------------------cCCCEEEEcChhhhhccCCCCCCCHHH-HHHHHH
Confidence 4689999999999999999999876421 123344555555544332111000000 000122
Q ss_pred CCHHHHHHHHHcCCeEEEEcC---HHHHHHHhcC--CCCcEEEEEeCCChHHHHHH
Q psy14166 189 TSSDSVLELVNSGRVAVLNPA---YQSLKVLRSP--AFKPLVLFIAPPPFAALKES 239 (264)
Q Consensus 189 t~~~si~~vl~~Gki~vld~~---~~~~~~Lr~~--~~~p~vIfI~pps~e~l~~~ 239 (264)
...+......++|.++|++.. ....+.++.. ....++||+.+| .+.+.++
T Consensus 520 ~l~~~a~~~~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~-~e~~~~R 574 (632)
T PRK05506 520 RVAEVARLMADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTP-LEVCEAR 574 (632)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCC-HHHHHhh
Confidence 222344556678999998876 3444555532 123478999987 6666653
No 124
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.50 E-value=0.00014 Score=72.04 Aligned_cols=78 Identities=18% Similarity=0.291 Sum_probs=52.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHH---HHcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSL---ISAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~---i~~~~flE~~~~~ 183 (264)
++..++|+|+||+|||||++.|.+.++ |..|+ .+|.++.-++.+.+.+. +.++.++..++..
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~-------------~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~ 423 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRFYE-------------PDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIA 423 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC-------------CCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHH
Confidence 569999999999999999999998864 22333 46766666666666543 3566777777777
Q ss_pred Cce-ec----CCHHHHHHHHH
Q psy14166 184 GHL-YG----TSSDSVLELVN 199 (264)
Q Consensus 184 g~~-YG----t~~~si~~vl~ 199 (264)
+|. +| .+.+.+.++++
T Consensus 424 ~Ni~~~~~~~~~~~~i~~~l~ 444 (571)
T TIGR02203 424 NNIAYGRTEQADRAEIERALA 444 (571)
T ss_pred HHHhcCCCCCCCHHHHHHHHH
Confidence 663 33 23444555444
No 125
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.49 E-value=0.00014 Score=72.16 Aligned_cols=64 Identities=20% Similarity=0.336 Sum_probs=43.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~ 183 (264)
+|..++|+|+||+|||||++.|++.++. ..|+ .+|.+..-++...+.+.+ .++.++..++..
T Consensus 365 ~Ge~i~IvG~sGsGKSTLlklL~gl~~p-------------~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~ 431 (576)
T TIGR02204 365 PGETVALVGPSGAGKSTLFQLLLRFYDP-------------QSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVM 431 (576)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC-------------CCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHH
Confidence 5699999999999999999999998652 2333 456655555555554432 355556666665
Q ss_pred Cc
Q psy14166 184 GH 185 (264)
Q Consensus 184 g~ 185 (264)
+|
T Consensus 432 ~N 433 (576)
T TIGR02204 432 EN 433 (576)
T ss_pred HH
Confidence 55
No 126
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.46 E-value=7.1e-05 Score=58.56 Aligned_cols=51 Identities=31% Similarity=0.375 Sum_probs=34.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCH
Q psy14166 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSH 164 (264)
Q Consensus 113 ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~ 164 (264)
|+|+|++|||||||.|.|...... -....+.+|+.+..+ +.++..+.++|-
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~~-~~~~~~~~T~~~~~~~~~~~~~~~~~vDt 54 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKLA-KVSNIPGTTRDPVYGQFEYNNKKFILVDT 54 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTSS-EESSSTTSSSSEEEEEEEETTEEEEEEES
T ss_pred EEEECCCCCCHHHHHHHHhccccc-cccccccceeeeeeeeeeeceeeEEEEeC
Confidence 799999999999999999975321 123346677776332 234555555543
No 127
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.45 E-value=0.0001 Score=65.48 Aligned_cols=27 Identities=48% Similarity=0.677 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++..++|+||||||||||++.|-...+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcC
Confidence 579999999999999999999887643
No 128
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.45 E-value=0.0002 Score=64.52 Aligned_cols=110 Identities=22% Similarity=0.311 Sum_probs=63.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH-------HcCCccee
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI-------SAGKMIEF 179 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i-------~~~~flE~ 179 (264)
++++++|+||||+|||||++.++...+ |..|| ++|.++.-.+.++..+.- +.|.....
T Consensus 33 ~Gei~~iiGgSGsGKStlLr~I~Gll~-------------P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFss 99 (263)
T COG1127 33 RGEILAILGGSGSGKSTLLRLILGLLR-------------PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSS 99 (263)
T ss_pred CCcEEEEECCCCcCHHHHHHHHhccCC-------------CCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccc
Confidence 579999999999999999999998753 34444 467776666665443322 22322222
Q ss_pred eeecCc-------eecCCHHHHHHHHHcCCeEEEEcCHHH---------------HHHHhcCCCCcEEEEEeCCC
Q psy14166 180 GEYKGH-------LYGTSSDSVLELVNSGRVAVLNPAYQS---------------LKVLRSPAFKPLVLFIAPPP 232 (264)
Q Consensus 180 ~~~~g~-------~YGt~~~si~~vl~~Gki~vld~~~~~---------------~~~Lr~~~~~p~vIfI~pps 232 (264)
-+..+| +-..+...++++... |+-.+-..+.+ +-..|.--+.|-+||++.|.
T Consensus 100 ltV~eNVafplre~~~lp~~~i~~lv~~-KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPt 173 (263)
T COG1127 100 LTVFENVAFPLREHTKLPESLIRELVLM-KLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPT 173 (263)
T ss_pred cchhHhhheehHhhccCCHHHHHHHHHH-HHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCC
Confidence 222333 223455555554322 22222222221 12233446789999999886
No 129
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.44 E-value=0.00069 Score=57.69 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+.+|+|.|+.||||||+++.|.+...
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999998754
No 130
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.43 E-value=0.00017 Score=66.68 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+-+|.|.||+|||||||++.|...
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468899999999999999887554
No 131
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.42 E-value=0.00065 Score=58.67 Aligned_cols=38 Identities=24% Similarity=0.169 Sum_probs=27.9
Q ss_pred cchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 95 PTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 95 ~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
++.++-..+.. .++.+|=|.|.||||||||++.|.+..
T Consensus 10 v~~~~r~~~~~--~~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 10 VTKQEREALKG--QKGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred cCHHHHHHHhC--CCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 34444443322 245789999999999999999998864
No 132
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.40 E-value=0.00032 Score=60.02 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=58.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCCCC-cc-cccc----ccCC-CCCCCCCCC-cce-eecCHHHHHHHH---HcCCccee
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDPDK-FT-QVTP----YTTR-PKKPGEEDG-KEY-HFVSHETMTSLI---SAGKMIEF 179 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p~~-f~-~~v~----~TTR-~~r~gE~~G-~dY-~fvs~~~f~~~i---~~~~flE~ 179 (264)
+|+|.|+||||||||++.|+...... .. ..++ |-.+ .++. ..| .++ +..+.+.|.+.+ .++.-+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~--~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~ 78 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRD--EDGNYDFESILDLDLLNKNLHDLLNGKEVEL 78 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccc--cCCCCCCCccccHHHHHHHHHHHHCCCeeec
Confidence 48899999999999999999874210 00 1111 1111 1111 111 111 123555555543 33433332
Q ss_pred eeecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCCh
Q psy14166 180 GEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPF 233 (264)
Q Consensus 180 ~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~ 233 (264)
-.|+ +.-+.....-...+....++|+++-......|+. +..+.|||++|..
T Consensus 79 p~yd-~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~--~~d~~I~vd~~~~ 129 (179)
T cd02028 79 PIYD-FRTGKRRGYRKLKLPPSGVVILEGIYALNERLRS--LLDIRVAVSGGVH 129 (179)
T ss_pred ccce-eECCccCCCceEEeCCCCEEEEecHHhcCHhHHh--hcCEEEEEeCCcc
Confidence 2221 1111111100012335567888877655455543 4678999999855
No 133
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.38 E-value=0.00041 Score=60.59 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.|+|+||+||||||+++.|++.+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998754
No 134
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.35 E-value=0.00094 Score=56.54 Aligned_cols=22 Identities=32% Similarity=0.644 Sum_probs=20.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhcC
Q psy14166 113 VVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 113 ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
|+|+||+||||||+++.|++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7999999999999999999875
No 135
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.34 E-value=0.00056 Score=64.05 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.|+|+|++|+|||||++.|+..+.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~ 187 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFN 187 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 47999999999999999999998743
No 136
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.34 E-value=0.00029 Score=70.36 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=24.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+|..++|+||||+|||||++.|.+.++
T Consensus 340 ~G~~~~ivG~sGsGKSTLl~ll~g~~~ 366 (569)
T PRK10789 340 PGQMLGICGPTGSGKSTLLSLIQRHFD 366 (569)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 579999999999999999999998765
No 137
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.32 E-value=0.00035 Score=62.02 Aligned_cols=126 Identities=16% Similarity=0.178 Sum_probs=62.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCcccccc----ccCCCCCCC-CCCCcceee---cCHHHHHHH---HHcCCcc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTP----YTTRPKKPG-EEDGKEYHF---VSHETMTSL---ISAGKMI 177 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~----~TTR~~r~g-E~~G~dY~f---vs~~~f~~~---i~~~~fl 177 (264)
+..+|.|.|+|||||||+++.|...++......++ |-......- |.++.+|.. .+-+.|.+. +.+|.-+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~v 86 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKPV 86 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCcc
Confidence 34689999999999999999999987633222222 111111111 233344332 233333332 2344433
Q ss_pred eeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHH-HHHhcCCCCcEEEEEeCCChHHHHH
Q psy14166 178 EFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSL-KVLRSPAFKPLVLFIAPPPFAALKE 238 (264)
Q Consensus 178 E~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~-~~Lr~~~~~p~vIfI~pps~e~l~~ 238 (264)
+--.|+ ..-++... -...+...+++|+++=.-.. +.| ..+.-+-|||++|...++.+
T Consensus 87 ~~P~yd-~~~~~r~~-~~i~~~p~~VVIvEGi~~l~d~~l--r~~~d~kIfvdtd~D~RliR 144 (218)
T COG0572 87 DLPVYD-YKTHTREP-ETIKVEPNDVVIVEGILLLYDERL--RDLMDLKIFVDTDADVRLIR 144 (218)
T ss_pred cccccc-hhcccccC-CccccCCCcEEEEecccccccHHH--HhhcCEEEEEeCCccHHHHH
Confidence 322111 11122110 01123345667766544222 233 34567899999996655543
No 138
>PRK14529 adenylate kinase; Provisional
Probab=97.30 E-value=0.0016 Score=58.06 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=59.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCCH
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSS 191 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~~ 191 (264)
.|+|+||+||||+|+++.|++.+.- -+.......|..-. .+..+ -..+...+.+|..+... ...
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~-~~is~gdllr~~i~---~~t~l----g~~i~~~i~~G~lvpde--------i~~ 65 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDL-AHIESGAIFREHIG---GGTEL----GKKAKEYIDRGDLVPDD--------ITI 65 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC-CCcccchhhhhhcc---CCChH----HHHHHHHHhccCcchHH--------HHH
Confidence 3889999999999999999988642 11222233443211 11111 12344455555554211 112
Q ss_pred HHHHHHHHc--CCeEEEEcCHHHHHHHh-------cCCCCc-EEEEEeCCChHHHHH
Q psy14166 192 DSVLELVNS--GRVAVLNPAYQSLKVLR-------SPAFKP-LVLFIAPPPFAALKE 238 (264)
Q Consensus 192 ~si~~vl~~--Gki~vld~~~~~~~~Lr-------~~~~~p-~vIfI~pps~e~l~~ 238 (264)
..+.+.+.+ .+-.|||+-|..+.+.. ..+..| +||++..|+ +.|.+
T Consensus 66 ~lv~~~l~~~~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~-~~l~~ 121 (223)
T PRK14529 66 PMILETLKQDGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPR-EVAKN 121 (223)
T ss_pred HHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCH-HHHHH
Confidence 333444432 34588999985444333 233444 589999885 45544
No 139
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.29 E-value=0.0014 Score=56.94 Aligned_cols=117 Identities=15% Similarity=0.282 Sum_probs=69.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcC-Ccceeee-------
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAG-KMIEFGE------- 181 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~-~flE~~~------- 181 (264)
+..+.|+|.||+|||||++.|....+.. +..|.|..|.-.. .|.+-.+..+-..+.... -|+....
T Consensus 32 GeVLgiVGESGSGKtTLL~~is~rl~p~-~G~v~Y~~r~~~~-----~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~ 105 (258)
T COG4107 32 GEVLGIVGESGSGKTTLLKCISGRLTPD-AGTVTYRMRDGQP-----RDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQ 105 (258)
T ss_pred CcEEEEEecCCCcHHhHHHHHhcccCCC-CCeEEEEcCCCCc-----hhHhhhchHHHHHHhhhccceeecCccccceee
Confidence 4899999999999999999999875432 2344444443221 222223333332222110 1111111
Q ss_pred -------------ecCceecCCHHHHHHHHHcCCeEEEEcC--H--------HHHHHHhcCCCCcEEEEEeCCC
Q psy14166 182 -------------YKGHLYGTSSDSVLELVNSGRVAVLNPA--Y--------QSLKVLRSPAFKPLVLFIAPPP 232 (264)
Q Consensus 182 -------------~~g~~YGt~~~si~~vl~~Gki~vld~~--~--------~~~~~Lr~~~~~p~vIfI~pps 232 (264)
....+||...++..+.+++-.|-.--++ | |-++..|+.--.|..||++.|.
T Consensus 106 VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPT 179 (258)
T COG4107 106 VSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPT 179 (258)
T ss_pred eccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCC
Confidence 1123799888888888876555433332 2 3456666666789999999996
No 140
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.29 E-value=0.00073 Score=67.48 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=24.7
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 107 ETLRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 107 ~~~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
|.+...|+|+|.+||||||+.+.|++..
T Consensus 3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L 30 (542)
T PRK14021 3 PTRRPQAVIIGMMGAGKTRVGKEVAQMM 30 (542)
T ss_pred CCCCccEEEECCCCCCHHHHHHHHHHHh
Confidence 3466899999999999999999999874
No 141
>PRK12289 GTPase RsgA; Reviewed
Probab=97.29 E-value=0.00022 Score=67.63 Aligned_cols=44 Identities=36% Similarity=0.352 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCcccccc-------ccCCCCCCCCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTP-------YTTRPKKPGEE 154 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~-------~TTR~~r~gE~ 154 (264)
+++++|+|+||||||||+|.|+...... ...++ ||||....-+.
T Consensus 172 ~ki~v~iG~SgVGKSSLIN~L~~~~~~~-t~~vs~~~~rGrHTT~~~~l~~l 222 (352)
T PRK12289 172 NKITVVAGPSGVGKSSLINRLIPDVELR-VGKVSGKLGRGRHTTRHVELFEL 222 (352)
T ss_pred cceEEEEeCCCCCHHHHHHHHcCccccc-cccccCCCCCCCCcCceeEEEEC
Confidence 3689999999999999999999653221 12333 69987654333
No 142
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.27 E-value=0.00031 Score=69.79 Aligned_cols=28 Identities=32% Similarity=0.377 Sum_probs=25.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
++..++|+||||+|||||++.|.+.++.
T Consensus 348 ~G~~~aivG~sGsGKSTL~~ll~g~~~~ 375 (547)
T PRK10522 348 RGELLFLIGGNGSGKSTLAMLLTGLYQP 375 (547)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5699999999999999999999988653
No 143
>COG0645 Predicted kinase [General function prediction only]
Probab=97.27 E-value=0.0027 Score=54.24 Aligned_cols=106 Identities=25% Similarity=0.311 Sum_probs=62.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCcccc-----------ccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCccee
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQV-----------TPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEF 179 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~-----------v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~ 179 (264)
+++++.|-+|+|||||+..|.+..+.. .. +|.-||.| .|..+.-++..
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~--~lrsD~irk~L~g~p~~~r~~-----~g~ys~~~~~~-------------- 60 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAI--RLRSDVIRKRLFGVPEETRGP-----AGLYSPAATAA-------------- 60 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCce--EEehHHHHHHhcCCcccccCC-----CCCCcHHHHHH--------------
Confidence 678999999999999999999886531 11 22222322 11111111111
Q ss_pred eeecCceecCCHHHHHHHHHcCCeEEEEcCH---H----HHHHHhcCCCCcEEEEEeCCChHHHHHHHHhhcc
Q psy14166 180 GEYKGHLYGTSSDSVLELVNSGRVAVLNPAY---Q----SLKVLRSPAFKPLVLFIAPPPFAALKESRITAFA 245 (264)
Q Consensus 180 ~~~~g~~YGt~~~si~~vl~~Gki~vld~~~---~----~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~~~~~ 245 (264)
.|.....-...++..|..+|+|... + +....+..+.....|-+..| .++++. |..++.
T Consensus 61 ------vy~~l~~~A~l~l~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap-~~v~~~-rl~aR~ 125 (170)
T COG0645 61 ------VYDELLGRAELLLSSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAP-EEVLRG-RLAARK 125 (170)
T ss_pred ------HHHHHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCc-HHHHHH-HHHHhC
Confidence 2333344557789999999999875 2 34455555554444555555 666665 455554
No 144
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.25 E-value=0.0012 Score=59.03 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.|+|+||+||||+|+++.|++.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999999875
No 145
>PRK07667 uridine kinase; Provisional
Probab=97.25 E-value=0.0008 Score=58.06 Aligned_cols=24 Identities=17% Similarity=0.041 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+|.|.|++|||||||++.|....
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998854
No 146
>PLN02348 phosphoribulokinase
Probab=97.25 E-value=0.00097 Score=64.02 Aligned_cols=27 Identities=30% Similarity=0.308 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+|.|.|+||||||||++.|.+...
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346889999999999999999998753
No 147
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.25 E-value=0.0017 Score=60.18 Aligned_cols=32 Identities=38% Similarity=0.395 Sum_probs=26.4
Q ss_pred cCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 103 LYPMETLRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 103 ~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+...+..+..|+|+|++||||||+.+.|++..
T Consensus 126 ~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 126 AGRRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred hhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 33344566899999999999999999999774
No 148
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.25 E-value=0.00021 Score=57.26 Aligned_cols=27 Identities=37% Similarity=0.634 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+|++|+|||||++.|....+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCCEEEEEccCCCccccceeeeccccc
Confidence 468999999999999999999998764
No 149
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.24 E-value=0.00047 Score=62.08 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=26.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCcc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFT 139 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~ 139 (264)
+|..+.|+|+||||||||++.|+.......+
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G 62 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEKPSSG 62 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCc
Confidence 5699999999999999999999998654333
No 150
>KOG0055|consensus
Probab=97.24 E-value=0.0002 Score=76.52 Aligned_cols=67 Identities=24% Similarity=0.378 Sum_probs=49.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHH---HHcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSL---ISAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~---i~~~~flE~~~~~ 183 (264)
.|+.++|+|||||||||++..|.+.+. |..|. +||.|..-++..-.++. +.+..-|..++..
T Consensus 1015 ~GqTvALVG~SGsGKSTvI~LLeRfYd-------------p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIr 1081 (1228)
T KOG0055|consen 1015 AGQTVALVGPSGSGKSTVISLLERFYD-------------PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIR 1081 (1228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC-------------CCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHH
Confidence 579999999999999999988877652 22232 56777776666666654 4566677777777
Q ss_pred Cc-eec
Q psy14166 184 GH-LYG 188 (264)
Q Consensus 184 g~-~YG 188 (264)
+| .||
T Consensus 1082 ENI~YG 1087 (1228)
T KOG0055|consen 1082 ENIAYG 1087 (1228)
T ss_pred HHHhcc
Confidence 77 688
No 151
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.24 E-value=0.00039 Score=71.01 Aligned_cols=64 Identities=19% Similarity=0.292 Sum_probs=44.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~ 183 (264)
+|..++|+|+||+|||||++.|.+.++ |..|+ .+|.+..-++.+.+.+.+ .++.++..++..
T Consensus 482 ~G~~vaivG~sGsGKSTL~~ll~g~~~-------------p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~ 548 (694)
T TIGR01846 482 PGEFIGIVGPSGSGKSTLTKLLQRLYT-------------PQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIR 548 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC-------------CCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHH
Confidence 569999999999999999999998864 22333 466666656666665542 345555556555
Q ss_pred Cc
Q psy14166 184 GH 185 (264)
Q Consensus 184 g~ 185 (264)
+|
T Consensus 549 eN 550 (694)
T TIGR01846 549 DN 550 (694)
T ss_pred HH
Confidence 55
No 152
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.23 E-value=0.00075 Score=61.49 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+..+||+|||||||||+++++-..
T Consensus 26 ~gef~vliGpSGsGKTTtLkMINrL 50 (309)
T COG1125 26 EGEFLVLIGPSGSGKTTTLKMINRL 50 (309)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhcc
Confidence 4689999999999999999877655
No 153
>PRK13973 thymidylate kinase; Provisional
Probab=97.21 E-value=0.0011 Score=58.03 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+++|+|-|+.||||||+++.|.+...
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~ 28 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLR 28 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999998753
No 154
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.21 E-value=0.00029 Score=55.90 Aligned_cols=23 Identities=39% Similarity=0.639 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHH
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLI 131 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~ 131 (264)
.++.++|+||||+|||||++.|.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 35899999999999999999986
No 155
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.21 E-value=0.0004 Score=53.55 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
+..++|+||+|+||||+++.|+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 468999999999999999999987653
No 156
>PRK13974 thymidylate kinase; Provisional
Probab=97.21 E-value=0.0032 Score=55.05 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=24.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
+.+|+|.|+.||||||+++.|.+..+.
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~ 29 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPS 29 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 589999999999999999999987653
No 157
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.21 E-value=0.00033 Score=60.90 Aligned_cols=27 Identities=26% Similarity=0.528 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998864
No 158
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.20 E-value=0.00031 Score=59.88 Aligned_cols=45 Identities=27% Similarity=0.202 Sum_probs=32.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCC-------CccccccccCCCCCCCCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPD-------KFTQVTPYTTRPKKPGEE 154 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~-------~f~~~v~~TTR~~r~gE~ 154 (264)
+..++|+|.+|||||||+|.|....-. .-....|.||+.+.....
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~ 178 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL 178 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec
Confidence 368999999999999999999975311 112346778888765443
No 159
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.20 E-value=0.00033 Score=60.59 Aligned_cols=27 Identities=37% Similarity=0.509 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 468999999999999999999998764
No 160
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.19 E-value=0.0011 Score=56.59 Aligned_cols=98 Identities=18% Similarity=0.202 Sum_probs=52.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCCCCcccccc-cc-CCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTP-YT-TRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGT 189 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~-~T-TR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt 189 (264)
.|+|.||+||||||+++.|++.+.-.+ ++ .+ =|..- .. .-+|-++|.+...++.-+...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~---vsaG~iFR~~A--~e-----~gmsl~ef~~~AE~~p~iD~~--------- 62 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKL---VSAGTIFREMA--RE-----RGMSLEEFSRYAEEDPEIDKE--------- 62 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCce---eeccHHHHHHH--HH-----cCCCHHHHHHHHhcCchhhHH---------
Confidence 589999999999999999998753211 11 00 01100 00 113445665554444332211
Q ss_pred CHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCC
Q psy14166 190 SSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPP 232 (264)
Q Consensus 190 ~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps 232 (264)
.|.-+..+.....|||.+...+.- ++ ....+-||+.+|-
T Consensus 63 -iD~rq~e~a~~~nvVlegrLA~Wi-~k--~~adlkI~L~Apl 101 (179)
T COG1102 63 -IDRRQKELAKEGNVVLEGRLAGWI-VR--EYADLKIWLKAPL 101 (179)
T ss_pred -HHHHHHHHHHcCCeEEhhhhHHHH-hc--cccceEEEEeCcH
Confidence 222233333355677787765432 22 3345569999983
No 161
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.19 E-value=0.00035 Score=61.60 Aligned_cols=28 Identities=36% Similarity=0.547 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p 52 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLLRP 52 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5689999999999999999999988643
No 162
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.19 E-value=0.00034 Score=60.84 Aligned_cols=28 Identities=39% Similarity=0.515 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~ 56 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDRP 56 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcCC
Confidence 4689999999999999999999988653
No 163
>KOG0057|consensus
Probab=97.19 E-value=0.00017 Score=71.25 Aligned_cols=79 Identities=24% Similarity=0.315 Sum_probs=53.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHH---HcCCcceeeeecCc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLI---SAGKMIEFGEYKGH 185 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~g~ 185 (264)
+|.-|+|+|+|||||||+++.|...+. +...| -+||.|..-++.+.+++.| .++..|.+.+.--|
T Consensus 377 kGekVaIvG~nGsGKSTilr~LlrF~d--~sG~I----------~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~N 444 (591)
T KOG0057|consen 377 KGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSI----------LIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYN 444 (591)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc--cCCcE----------EECCeeHhhhChHHhhhheeEeCCcccccchhHHHH
Confidence 678999999999999999999998753 21111 2588888888888888765 35555544444333
Q ss_pred -eecCCHHHHHHHHH
Q psy14166 186 -LYGTSSDSVLELVN 199 (264)
Q Consensus 186 -~YGt~~~si~~vl~ 199 (264)
.||.+..+-++|++
T Consensus 445 I~YGn~sas~eeV~e 459 (591)
T KOG0057|consen 445 IKYGNPSASDEEVVE 459 (591)
T ss_pred hhcCCCCcCHHHHHH
Confidence 56655443344433
No 164
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.18 E-value=0.0017 Score=55.62 Aligned_cols=28 Identities=29% Similarity=0.595 Sum_probs=24.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+..++|+||+|+|||||++.|+...|.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 4589999999999999999999987654
No 165
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.18 E-value=0.00035 Score=59.57 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998764
No 166
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.17 E-value=0.0019 Score=53.03 Aligned_cols=106 Identities=20% Similarity=0.289 Sum_probs=53.7
Q ss_pred EEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCC-CcceeecCHHHHHHHHHcCCcceeeeecCceecCCHHH
Q psy14166 115 LIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEED-GKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDS 193 (264)
Q Consensus 115 LiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~-G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~~~s 193 (264)
|+|||||||+|++++|++.+. ..+..+...=|. ++. +-. .-..+...+.+|..+... .-.+-
T Consensus 1 i~G~PgsGK~t~~~~la~~~~-~~~is~~~llr~----~~~~~s~----~g~~i~~~l~~g~~vp~~--------~v~~l 63 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG-LVHISVGDLLRE----EIKSDSE----LGKQIQEYLDNGELVPDE--------LVIEL 63 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT-SEEEEHHHHHHH----HHHTTSH----HHHHHHHHHHTTSS--HH--------HHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC-cceechHHHHHH----HHhhhhH----HHHHHHHHHHhhccchHH--------HHHHH
Confidence 789999999999999999853 111111111111 000 000 013455556666665321 11123
Q ss_pred HHHHHH---cCCeEEEEcCHHHHHHH---hc----CCCCc-EEEEEeCCChHHHHH
Q psy14166 194 VLELVN---SGRVAVLNPAYQSLKVL---RS----PAFKP-LVLFIAPPPFAALKE 238 (264)
Q Consensus 194 i~~vl~---~Gki~vld~~~~~~~~L---r~----~~~~p-~vIfI~pps~e~l~~ 238 (264)
+...+. ..+-.|||+-|....++ .. ....| .+|+++.|. +.+.+
T Consensus 64 l~~~l~~~~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~-~~~~~ 118 (151)
T PF00406_consen 64 LKERLEQPPCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPD-ETLIE 118 (151)
T ss_dssp HHHHHHSGGTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--H-HHHHH
T ss_pred HHHHHhhhcccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccch-hhhhh
Confidence 333333 34678999998544333 33 45556 689999874 44444
No 167
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.17 E-value=0.00037 Score=60.30 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 468999999999999999999998864
No 168
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.17 E-value=0.00032 Score=54.92 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhcC
Q psy14166 113 VVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 113 ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
|+|.|++|||||||++.|.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999874
No 169
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.16 E-value=0.00013 Score=66.72 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+|+|+|+||||||||++.|.+..+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~ 24 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG 24 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC
Confidence 478999999999999999998764
No 170
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.16 E-value=0.0004 Score=60.09 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998764
No 171
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.16 E-value=0.0018 Score=55.25 Aligned_cols=124 Identities=15% Similarity=0.200 Sum_probs=67.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCC-ccc--c----cc-----------c-cCCCC----CCCC-CCCcceeecCHHH
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDK-FTQ--V----TP-----------Y-TTRPK----KPGE-EDGKEYHFVSHET 166 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~-f~~--~----v~-----------~-TTR~~----r~gE-~~G~dY~fvs~~~ 166 (264)
--|.|.|++|||||||+.+|++...+. |.. . |. . +|-.. +.+. .--++=+-|+.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~ 85 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEG 85 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHH
Confidence 468999999999999999998653221 111 1 11 0 11000 0000 0002223455556
Q ss_pred HHHH--------HHcCCcceeeeecCc--eecCCHHHHHHHHHcCCeEEEEcCHH----HHHHHhcCCCCcEEEEEeCCC
Q psy14166 167 MTSL--------ISAGKMIEFGEYKGH--LYGTSSDSVLELVNSGRVAVLNPAYQ----SLKVLRSPAFKPLVLFIAPPP 232 (264)
Q Consensus 167 f~~~--------i~~~~flE~~~~~g~--~YGt~~~si~~vl~~Gki~vld~~~~----~~~~Lr~~~~~p~vIfI~pps 232 (264)
+++. ....+.+---+.... .--.-.+.|++++..++..|..++.. .++.++.. ..++|||+|-+
T Consensus 86 le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~--~~v~v~lt~~N 163 (179)
T COG1618 86 LEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKKL--GGVYVFLTPEN 163 (179)
T ss_pred HHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHhhhc--CCEEEEEccch
Confidence 6532 112233322222111 11122478899999999888888866 77777653 46777898877
Q ss_pred hHHH
Q psy14166 233 FAAL 236 (264)
Q Consensus 233 ~e~l 236 (264)
.+.+
T Consensus 164 R~~i 167 (179)
T COG1618 164 RNRI 167 (179)
T ss_pred hhHH
Confidence 6644
No 172
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.16 E-value=0.00039 Score=60.14 Aligned_cols=28 Identities=43% Similarity=0.610 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLEEP 52 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4689999999999999999999988653
No 173
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.16 E-value=0.0004 Score=59.93 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 468999999999999999999998864
No 174
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.15 E-value=0.00035 Score=60.79 Aligned_cols=27 Identities=30% Similarity=0.570 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998765
No 175
>PLN02674 adenylate kinase
Probab=97.15 E-value=0.0011 Score=59.90 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
...|+|+||+||||+|++..|++.+.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~ 56 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYC 56 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999998764
No 176
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.15 E-value=0.00039 Score=60.51 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 568999999999999999999998864
No 177
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.15 E-value=0.00042 Score=60.37 Aligned_cols=28 Identities=36% Similarity=0.450 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~~ 57 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLDNP 57 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4689999999999999999999988653
No 178
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.15 E-value=0.00068 Score=60.96 Aligned_cols=27 Identities=44% Similarity=0.602 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+..|+|+||||+|||||++.|....+
T Consensus 29 ~GE~VaiIG~SGaGKSTLLR~lngl~d 55 (258)
T COG3638 29 QGEMVAIIGPSGAGKSTLLRSLNGLVD 55 (258)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccC
Confidence 468999999999999999999988644
No 179
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.14 E-value=0.00039 Score=59.56 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHh
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIA 132 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~ 132 (264)
.+.+++|+||||+|||||++.|..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 568999999999999999998863
No 180
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.14 E-value=0.0004 Score=61.37 Aligned_cols=27 Identities=41% Similarity=0.525 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 468999999999999999999998764
No 181
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.14 E-value=0.0006 Score=67.63 Aligned_cols=27 Identities=37% Similarity=0.720 Sum_probs=24.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+|..++|+||||+|||||++.|++.++
T Consensus 343 ~G~~~~ivG~sGsGKSTL~~ll~g~~~ 369 (544)
T TIGR01842 343 AGEALAIIGPSGSGKSTLARLIVGIWP 369 (544)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 569999999999999999999998865
No 182
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.14 E-value=0.00062 Score=68.31 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=24.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+|..++|+||||+|||||++.|++.++
T Consensus 360 ~G~~~~ivG~sGsGKSTL~~ll~g~~~ 386 (585)
T TIGR01192 360 AGQTVAIVGPTGAGKTTLINLLQRVYD 386 (585)
T ss_pred CCCEEEEECCCCCCHHHHHHHHccCCC
Confidence 579999999999999999999998765
No 183
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=97.14 E-value=0.00059 Score=67.97 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++..++|+||||+|||||++.|.+.++
T Consensus 367 ~G~~~aivG~sGsGKSTl~~ll~g~~~ 393 (555)
T TIGR01194 367 QGDIVFIVGENGCGKSTLAKLFCGLYI 393 (555)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 569999999999999999999998764
No 184
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.14 E-value=0.00041 Score=60.99 Aligned_cols=28 Identities=32% Similarity=0.410 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 57 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLERP 57 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5699999999999999999999988653
No 185
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.13 E-value=0.0004 Score=59.54 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 468999999999999999999998754
No 186
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.13 E-value=0.00042 Score=60.06 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998864
No 187
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.13 E-value=0.0018 Score=52.56 Aligned_cols=56 Identities=27% Similarity=0.375 Sum_probs=36.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCHHHH
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSHETM 167 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~~~f 167 (264)
..|+|+|.+|+|||||+++|..... ......+.||+..... +.+|.+|.+++...+
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~ 60 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEER-VIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGI 60 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccc-eeccCCCCCccCceeeEEEECCeeEEEEECCCC
Confidence 5699999999999999999987532 1223345566655332 235566666665443
No 188
>PRK13808 adenylate kinase; Provisional
Probab=97.13 E-value=0.0016 Score=61.28 Aligned_cols=24 Identities=29% Similarity=0.650 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.|+|+||+||||+|+...|++.+.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~yg 25 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYG 25 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999998753
No 189
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.13 E-value=0.00045 Score=59.92 Aligned_cols=27 Identities=33% Similarity=0.598 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998764
No 190
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.12 E-value=0.0041 Score=57.43 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHh
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIA 132 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~ 132 (264)
.++|+|+|+|||||||+++.|..
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~~ 28 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALED 28 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHHH
Confidence 36999999999999999999964
No 191
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.12 E-value=0.0011 Score=64.28 Aligned_cols=105 Identities=24% Similarity=0.318 Sum_probs=63.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG 188 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG 188 (264)
+.|+|+|-++||||||.|+|+...- -.....|.|||.+..+ +..|.++..+|..-++.. . .+.+-.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~-AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~---------~--~~~l~~ 71 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI-AIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDG---------D--EDELQE 71 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee-eEeecCCCCccCCccceeEEcCceEEEEECCCCCcC---------C--chHHHH
Confidence 5899999999999999999998743 2344578899998654 556777766654333210 0 000111
Q ss_pred CCHHHHHHHHHcCCeEEEEcCH---------HHHHHHhcCCCCcEEEEE
Q psy14166 189 TSSDSVLELVNSGRVAVLNPAY---------QSLKVLRSPAFKPLVLFI 228 (264)
Q Consensus 189 t~~~si~~vl~~Gki~vld~~~---------~~~~~Lr~~~~~p~vIfI 228 (264)
.-.+....++++..++|+.+|. +.++.|| ..-+|.++-+
T Consensus 72 ~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr-~~~kpviLvv 119 (444)
T COG1160 72 LIREQALIAIEEADVILFVVDGREGITPADEEIAKILR-RSKKPVILVV 119 (444)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-hcCCCEEEEE
Confidence 1234455566666666555553 2356676 3335555444
No 192
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.12 E-value=0.00045 Score=60.91 Aligned_cols=27 Identities=48% Similarity=0.568 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 468999999999999999999998764
No 193
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.12 E-value=0.00045 Score=60.29 Aligned_cols=28 Identities=32% Similarity=0.487 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 57 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLLKP 57 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5699999999999999999999988643
No 194
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.12 E-value=0.0046 Score=53.13 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHh
Q psy14166 112 PVVLIGPSGVGRSELKRRLIA 132 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~ 132 (264)
.|+|.|.||+||||+.++|..
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~~ 22 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLRE 22 (180)
T ss_pred eEEEeCCCCCchHHHHHHHHH
Confidence 689999999999999999983
No 195
>PLN02199 shikimate kinase
Probab=97.12 E-value=0.0025 Score=59.19 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.++.|+|+|.+|+||||+.+.|++..
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~L 126 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVL 126 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35899999999999999999999763
No 196
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.11 E-value=0.00047 Score=60.14 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998754
No 197
>KOG0055|consensus
Probab=97.11 E-value=0.00032 Score=74.99 Aligned_cols=70 Identities=26% Similarity=0.393 Sum_probs=47.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHH---HHcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSL---ISAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~---i~~~~flE~~~~~ 183 (264)
.|..++|+|||||||||+++.|...+. |..|+ +||.|-.-++....... +.+...+...+..
T Consensus 378 ~G~~valVG~SGsGKST~i~LL~Rfyd-------------P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~ 444 (1228)
T KOG0055|consen 378 SGQTVALVGPSGSGKSTLIQLLARFYD-------------PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIR 444 (1228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC-------------CCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHH
Confidence 468999999999999999999988753 33444 46776665555555443 2344456666666
Q ss_pred Cc-eecCCH
Q psy14166 184 GH-LYGTSS 191 (264)
Q Consensus 184 g~-~YGt~~ 191 (264)
+| .||.+.
T Consensus 445 eNI~~G~~d 453 (1228)
T KOG0055|consen 445 ENIRYGKPD 453 (1228)
T ss_pred HHHhcCCCc
Confidence 66 688744
No 198
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.11 E-value=0.00044 Score=59.94 Aligned_cols=27 Identities=26% Similarity=0.541 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 468999999999999999999998754
No 199
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.10 E-value=0.00048 Score=60.30 Aligned_cols=27 Identities=26% Similarity=0.517 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 468999999999999999999998754
No 200
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.09 E-value=0.0004 Score=61.77 Aligned_cols=26 Identities=42% Similarity=0.662 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+++.+|+||||||||||++.|-..+
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred CCceEEEECCCCcCHHHHHHHHHhhc
Confidence 45899999999999999998876553
No 201
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.09 E-value=0.00044 Score=60.84 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 468999999999999999999998764
No 202
>PRK05439 pantothenate kinase; Provisional
Probab=97.09 E-value=0.001 Score=62.06 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+-+|.|.|++||||||+++.|....
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44588899999999999999998743
No 203
>PHA00729 NTP-binding motif containing protein
Probab=97.08 E-value=0.0042 Score=55.48 Aligned_cols=55 Identities=15% Similarity=0.059 Sum_probs=34.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCcc-ccccccCCCCCCCCCCCcceeecCHHHHHHHH
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFT-QVTPYTTRPKKPGEEDGKEYHFVSHETMTSLI 171 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~-~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i 171 (264)
..|+|+|++|+|||||+..|+......+. ....+ ..-..+....|++.+++...+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~------~~~d~~~~~~fid~~~Ll~~L 73 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKD------DAWQYVQNSYFFELPDALEKI 73 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchh------hHHhcCCcEEEEEHHHHHHHH
Confidence 36899999999999999999876321010 00111 001234566788887776655
No 204
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.08 E-value=0.00053 Score=59.82 Aligned_cols=27 Identities=41% Similarity=0.621 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998854
No 205
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.06 E-value=0.00054 Score=58.92 Aligned_cols=28 Identities=29% Similarity=0.320 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 50 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEKF 50 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4689999999999999999999988653
No 206
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.06 E-value=0.00054 Score=59.98 Aligned_cols=26 Identities=46% Similarity=0.621 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+||+|+|||||++.|+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 46899999999999999999999986
No 207
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.06 E-value=0.00057 Score=57.91 Aligned_cols=27 Identities=41% Similarity=0.647 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998765
No 208
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.06 E-value=0.00055 Score=59.28 Aligned_cols=27 Identities=37% Similarity=0.583 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++..++|+||+|+|||||++.|+...+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999999864
No 209
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.06 E-value=0.00058 Score=57.24 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+..++|+||+|+|||||++.|+...+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 568999999999999999999998764
No 210
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=97.05 E-value=0.0005 Score=66.80 Aligned_cols=58 Identities=26% Similarity=0.273 Sum_probs=45.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCHHHH
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSHETM 167 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~~~f 167 (264)
.|--+||+|+|+||||+|+|.|++.+-. ....++.|||.--+. .++|...+.+|.+-.
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~A-IVTdI~GTTRDviee~i~i~G~pv~l~DTAGi 275 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRA-IVTDIAGTTRDVIEEDINLNGIPVRLVDTAGI 275 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCce-EecCCCCCccceEEEEEEECCEEEEEEecCCc
Confidence 4678999999999999999999998754 456789999997543 367887777765544
No 211
>PLN03232 ABC transporter C family member; Provisional
Probab=97.05 E-value=0.00076 Score=74.61 Aligned_cols=78 Identities=13% Similarity=0.189 Sum_probs=57.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~ 183 (264)
+|..|+|+|+||+|||||++.|.+.++ |..|+ +||+|..-++.+.+.+.+ .++.++..++..
T Consensus 1261 ~GekvaIVG~SGSGKSTL~~lL~rl~~-------------p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr 1327 (1495)
T PLN03232 1261 PSEKVGVVGRTGAGKSSMLNALFRIVE-------------LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVR 1327 (1495)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-------------CCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHH
Confidence 569999999999999999999998754 33454 588888777877777653 577788888777
Q ss_pred Cce-ec--CCHHHHHHHHH
Q psy14166 184 GHL-YG--TSSDSVLELVN 199 (264)
Q Consensus 184 g~~-YG--t~~~si~~vl~ 199 (264)
.|+ ++ .+.+.+.++++
T Consensus 1328 ~NL~~~~~~sdeei~~al~ 1346 (1495)
T PLN03232 1328 FNIDPFSEHNDADLWEALE 1346 (1495)
T ss_pred HHcCCCCCCCHHHHHHHHH
Confidence 764 22 24455666555
No 212
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.05 E-value=0.00058 Score=59.85 Aligned_cols=27 Identities=41% Similarity=0.549 Sum_probs=24.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 469999999999999999999999864
No 213
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.04 E-value=0.00057 Score=60.48 Aligned_cols=27 Identities=37% Similarity=0.626 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999999864
No 214
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.04 E-value=0.00056 Score=59.42 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 468999999999999999999998864
No 215
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.04 E-value=0.00059 Score=61.33 Aligned_cols=27 Identities=30% Similarity=0.589 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998864
No 216
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.04 E-value=0.0013 Score=63.40 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
..+.|+|+|++|+|||||++.|+..+
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 56899999999999999999999874
No 217
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.04 E-value=0.00064 Score=57.33 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+..++|+||+|+|||||++.|+...+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998764
No 218
>PRK14526 adenylate kinase; Provisional
Probab=97.04 E-value=0.0028 Score=55.79 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 113 VVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 113 ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
|+|+||+||||||+++.|++.+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~ 25 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELN 25 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999997753
No 219
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.04 E-value=0.00059 Score=60.16 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 468999999999999999999998864
No 220
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.03 E-value=0.00059 Score=58.96 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 468999999999999999999998764
No 221
>PRK10908 cell division protein FtsE; Provisional
Probab=97.03 E-value=0.0006 Score=59.56 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIERP 54 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5689999999999999999999988653
No 222
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.0006 Score=59.71 Aligned_cols=28 Identities=25% Similarity=0.517 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFYDP 55 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 5689999999999999999999988653
No 223
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.03 E-value=0.00065 Score=58.32 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+|++|+|||||++.|+...+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIMQP 52 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4589999999999999999999998653
No 224
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.03 E-value=0.00059 Score=59.86 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998754
No 225
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.02 E-value=0.00064 Score=60.02 Aligned_cols=27 Identities=37% Similarity=0.461 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 468999999999999999999998864
No 226
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.02 E-value=0.00054 Score=56.72 Aligned_cols=38 Identities=24% Similarity=0.203 Sum_probs=27.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRP 148 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~ 148 (264)
+..++++|+||||||||+|.|...... -...++.|||.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~-~~~~~~g~T~~ 139 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVC-KVAPIPGETKV 139 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCce-eeCCCCCeeEe
Confidence 356789999999999999999875321 22345555554
No 227
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.02 E-value=0.0006 Score=59.80 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 569999999999999999999998865
No 228
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.00 E-value=0.00067 Score=55.80 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 568999999999999999999998764
No 229
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.00 E-value=0.00068 Score=58.81 Aligned_cols=28 Identities=36% Similarity=0.623 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
++.+++|+||+|+|||||++.|+...+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLLPP 54 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5699999999999999999999998653
No 230
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.00 E-value=0.00071 Score=58.13 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998864
No 231
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.99 E-value=0.00074 Score=56.92 Aligned_cols=27 Identities=37% Similarity=0.629 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 468999999999999999999998764
No 232
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.99 E-value=0.00071 Score=59.45 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++.+++|+||+|+|||||++.|+...+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 468999999999999999999998764
No 233
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.99 E-value=0.00066 Score=60.04 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999999864
No 234
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.99 E-value=0.0007 Score=58.62 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 469999999999999999999998864
No 235
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.99 E-value=0.00071 Score=58.30 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++.+++|+||+|+|||||++.|+...+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 569999999999999999999998864
No 236
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.99 E-value=0.00069 Score=60.05 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 468999999999999999999998765
No 237
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.99 E-value=0.00062 Score=58.94 Aligned_cols=26 Identities=38% Similarity=0.635 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+ +++|+||+|+|||||++.|+...+
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCCC
Confidence 36 999999999999999999998754
No 238
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.99 E-value=0.00086 Score=48.09 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
+...+|+|++|+|||||+..+.-.
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999987644
No 239
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.98 E-value=0.0007 Score=59.92 Aligned_cols=27 Identities=44% Similarity=0.662 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998864
No 240
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.98 E-value=0.0007 Score=60.13 Aligned_cols=27 Identities=37% Similarity=0.593 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 468999999999999999999998764
No 241
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.97 E-value=0.00076 Score=59.52 Aligned_cols=28 Identities=32% Similarity=0.407 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 37 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLAQP 37 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4689999999999999999999988653
No 242
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.97 E-value=0.00073 Score=57.42 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998764
No 243
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.97 E-value=0.00074 Score=62.83 Aligned_cols=58 Identities=24% Similarity=0.409 Sum_probs=40.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC-CCCccccc------cccCC-CCCCCCCCCcceeecCHHHHHHH
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD-PDKFTQVT------PYTTR-PKKPGEEDGKEYHFVSHETMTSL 170 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~-p~~f~~~v------~~TTR-~~r~gE~~G~dY~fvs~~~f~~~ 170 (264)
.+++++|.||||+|||||++.++... |+ -+.++ -.+|+ +.+ .-.+.|.|.+.+.|..|
T Consensus 27 ~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~-~G~I~~~~~~l~D~~~~~~~---~R~VGfvFQ~YALF~Hm 92 (345)
T COG1118 27 SGELVALLGPSGAGKSTLLRIIAGLETPD-AGRIRLNGRVLFDVSNLAVR---DRKVGFVFQHYALFPHM 92 (345)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCcCCCC-CceEEECCEeccchhccchh---hcceeEEEechhhcccc
Confidence 56999999999999999999999874 43 22221 12333 211 13477888888888765
No 244
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.96 E-value=0.00076 Score=58.68 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~~~ 55 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 468999999999999999999998864
No 245
>KOG0734|consensus
Probab=96.96 E-value=0.0014 Score=65.07 Aligned_cols=71 Identities=24% Similarity=0.486 Sum_probs=51.3
Q ss_pred chHhhhhcCCCCC--------CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHH
Q psy14166 96 TYEEVAKLYPMET--------LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETM 167 (264)
Q Consensus 96 ~Yeev~~~~~~~~--------~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f 167 (264)
--|||+.+-..|. -++=|.|+||+|.|||-|++.++.. .|++++|.+-.+|
T Consensus 315 ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE---------------------A~VPFF~~sGSEF 373 (752)
T KOG0734|consen 315 ELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE---------------------AGVPFFYASGSEF 373 (752)
T ss_pred HHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc---------------------cCCCeEeccccch
Confidence 3677887765442 3467999999999999999988854 3577888888888
Q ss_pred HHHHHcCCcceeeeecCceecCCHHHHHHHHHcCC
Q psy14166 168 TSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGR 202 (264)
Q Consensus 168 ~~~i~~~~flE~~~~~g~~YGt~~~si~~vl~~Gk 202 (264)
++|. -|.-...|++..++.|
T Consensus 374 dEm~---------------VGvGArRVRdLF~aAk 393 (752)
T KOG0734|consen 374 DEMF---------------VGVGARRVRDLFAAAK 393 (752)
T ss_pred hhhh---------------hcccHHHHHHHHHHHH
Confidence 8762 2444566777666544
No 246
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.95 E-value=0.00071 Score=59.33 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|....+
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 468999999999999999999998765
No 247
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.95 E-value=0.00085 Score=56.93 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|....+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998764
No 248
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.95 E-value=0.00078 Score=58.23 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p 53 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLARP 53 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5689999999999999999999988653
No 249
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.95 E-value=0.00076 Score=60.92 Aligned_cols=27 Identities=37% Similarity=0.553 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 568999999999999999999998864
No 250
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.95 E-value=0.00078 Score=59.54 Aligned_cols=29 Identities=38% Similarity=0.457 Sum_probs=24.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 108 TLRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 108 ~~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.++.+++|+||+|||||||++.|+...+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 35679999999999999999999987553
No 251
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.95 E-value=0.00083 Score=56.82 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+..++|+||+|+|||||++.|+...+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 468999999999999999999998764
No 252
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.94 E-value=0.0008 Score=60.38 Aligned_cols=27 Identities=19% Similarity=0.474 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 568999999999999999999998754
No 253
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.94 E-value=0.00077 Score=59.34 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 468999999999999999999998864
No 254
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.94 E-value=0.00079 Score=59.78 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998754
No 255
>KOG0056|consensus
Probab=96.94 E-value=0.00059 Score=67.12 Aligned_cols=72 Identities=24% Similarity=0.314 Sum_probs=47.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHH---HcCCcceeeeecCc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLI---SAGKMIEFGEYKGH 185 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~g~ 185 (264)
.|+.|+|+||||+||||+++.|...+.-. ..+ -++||.|..-|+.......| .++..+...+..-|
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~-sGs----------I~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yN 631 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVN-SGS----------ITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYN 631 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhcc-Cce----------EEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeh
Confidence 46999999999999999999998875311 111 15688888777777776653 44555544444333
Q ss_pred -eecCCH
Q psy14166 186 -LYGTSS 191 (264)
Q Consensus 186 -~YGt~~ 191 (264)
-||.+-
T Consensus 632 Iryak~~ 638 (790)
T KOG0056|consen 632 IRYAKPS 638 (790)
T ss_pred eeecCCC
Confidence 465443
No 256
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.94 E-value=0.00081 Score=59.92 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGRLAP 55 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4689999999999999999999998654
No 257
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.94 E-value=0.00085 Score=56.39 Aligned_cols=27 Identities=41% Similarity=0.629 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 468999999999999999999998864
No 258
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.94 E-value=0.00079 Score=60.00 Aligned_cols=27 Identities=37% Similarity=0.513 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++.+++|+||+|+|||||++.|+...+
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 55 (253)
T PRK14267 29 QNGVFALMGPSGCGKSTLLRTFNRLLE 55 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 568999999999999999999998754
No 259
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=96.93 E-value=0.00074 Score=61.15 Aligned_cols=38 Identities=29% Similarity=0.347 Sum_probs=29.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKK 150 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r 150 (264)
.|+|+|++|||||||+|.|.+.... .....+.|||..-
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~-~vs~~~~TTr~~i 39 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKIS-ITSPKAQTTRNRI 39 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEe-ecCCCCCcccCcE
Confidence 5899999999999999999986431 2245678998753
No 260
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=96.93 E-value=0.0012 Score=73.17 Aligned_cols=79 Identities=20% Similarity=0.285 Sum_probs=59.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHH---HHcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSL---ISAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~---i~~~~flE~~~~~ 183 (264)
+|..|+|+|+||+|||||++.|.+.++ |..|+ +||+|..-++.+.+... +.++.++..++..
T Consensus 1311 ~GekiaIVGrTGsGKSTL~~lL~rl~~-------------~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr 1377 (1522)
T TIGR00957 1311 GGEKVGIVGRTGAGKSSLTLGLFRINE-------------SAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLR 1377 (1522)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcc-------------CCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHH
Confidence 569999999999999999999998754 23343 58888888888877765 3577788888887
Q ss_pred Cce--ec-CCHHHHHHHHHc
Q psy14166 184 GHL--YG-TSSDSVLELVNS 200 (264)
Q Consensus 184 g~~--YG-t~~~si~~vl~~ 200 (264)
.|+ +| .+.+.+.++++.
T Consensus 1378 ~NLdp~~~~sdeei~~al~~ 1397 (1522)
T TIGR00957 1378 MNLDPFSQYSDEEVWWALEL 1397 (1522)
T ss_pred HHcCcccCCCHHHHHHHHHH
Confidence 775 33 355666666663
No 261
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.93 E-value=0.00073 Score=58.54 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 468999999999999999999998864
No 262
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.93 E-value=0.00083 Score=58.70 Aligned_cols=27 Identities=41% Similarity=0.461 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 469999999999999999999998864
No 263
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.92 E-value=0.00079 Score=60.00 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 57 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGFYKP 57 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 4689999999999999999999998653
No 264
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.92 E-value=0.00085 Score=59.32 Aligned_cols=27 Identities=44% Similarity=0.657 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998864
No 265
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.92 E-value=0.00086 Score=59.62 Aligned_cols=27 Identities=41% Similarity=0.639 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 569999999999999999999998864
No 266
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.92 E-value=0.00084 Score=59.14 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 568999999999999999999998864
No 267
>PRK06620 hypothetical protein; Validated
Probab=96.91 E-value=0.005 Score=54.27 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=31.1
Q ss_pred HHHHHHcCCeEEEEcC--HHH--HHHHhcCCCCcEEEEEeCCChHHHHHHHH
Q psy14166 194 VLELVNSGRVAVLNPA--YQS--LKVLRSPAFKPLVLFIAPPPFAALKESRI 241 (264)
Q Consensus 194 i~~vl~~Gki~vld~~--~~~--~~~Lr~~~~~p~vIfI~pps~e~l~~~r~ 241 (264)
+..+.++|+.+|+..+ |.. +..|++.--.-.++=|.+|+.+.+.+..+
T Consensus 106 ~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~ 157 (214)
T PRK06620 106 FNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIF 157 (214)
T ss_pred HHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHH
Confidence 3444578888877776 322 35566544445688899999887665443
No 268
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.91 E-value=0.00086 Score=58.90 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRFYD 53 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 468999999999999999999998865
No 269
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=96.91 E-value=0.00089 Score=55.36 Aligned_cols=42 Identities=26% Similarity=0.218 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKP 151 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~ 151 (264)
....++|+|.+|||||||+|.|....... ....++||+....
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~-~~~~~~~t~~~~~ 140 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLK-VGNVPGTTTSQQE 140 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccccc-ccCCCCcccceEE
Confidence 34789999999999999999999864321 2245788887654
No 270
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.91 E-value=0.0009 Score=59.67 Aligned_cols=27 Identities=48% Similarity=0.826 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998764
No 271
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.91 E-value=0.00091 Score=60.52 Aligned_cols=28 Identities=32% Similarity=0.348 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p 76 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLIEP 76 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5689999999999999999999998653
No 272
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.90 E-value=0.00088 Score=59.58 Aligned_cols=27 Identities=37% Similarity=0.450 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 468999999999999999999998763
No 273
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.90 E-value=0.00085 Score=61.29 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 63 (289)
T PRK13645 36 KNKVTCVIGTTGSGKSTMIQLTNGLIIS 63 (289)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4689999999999999999999998653
No 274
>PTZ00243 ABC transporter; Provisional
Probab=96.90 E-value=0.0012 Score=73.21 Aligned_cols=79 Identities=19% Similarity=0.275 Sum_probs=57.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~ 183 (264)
+|..|+|+|+||+|||||++.|.+.+. |..|+ +||+|..-++..++.+.+ .++.++..++..
T Consensus 1335 ~GekVaIVGrTGSGKSTLl~lLlrl~~-------------p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIr 1401 (1560)
T PTZ00243 1335 PREKVGIVGRTGSGKSTLLLTFMRMVE-------------VCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVR 1401 (1560)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-------------CCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHH
Confidence 568999999999999999999998764 23343 588887777777777653 577777777777
Q ss_pred Cce--e-cCCHHHHHHHHHc
Q psy14166 184 GHL--Y-GTSSDSVLELVNS 200 (264)
Q Consensus 184 g~~--Y-Gt~~~si~~vl~~ 200 (264)
.|+ + ..+.+.|.++++.
T Consensus 1402 eNIdp~~~~sdeeI~~Al~~ 1421 (1560)
T PTZ00243 1402 QNVDPFLEASSAEVWAALEL 1421 (1560)
T ss_pred HHhCcccCCCHHHHHHHHHH
Confidence 664 1 1245667666664
No 275
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.90 E-value=0.00088 Score=59.68 Aligned_cols=26 Identities=38% Similarity=0.627 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+||+|+|||||++.|+...
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 56899999999999999999999764
No 276
>PLN03130 ABC transporter C family member; Provisional
Probab=96.90 E-value=0.0013 Score=73.43 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=56.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~ 183 (264)
++..|+|+|+||+|||||++.|.+.++ |..|+ +||+|..-++.+.+.+.+ .++.++..|+..
T Consensus 1264 ~GekVaIVGrSGSGKSTLl~lL~rl~~-------------p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIr 1330 (1622)
T PLN03130 1264 PSEKVGIVGRTGAGKSSMLNALFRIVE-------------LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVR 1330 (1622)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCC-------------CCCceEEECCEecccCCHHHHHhccEEECCCCccccccHH
Confidence 568999999999999999999998754 33443 588888777777777643 577777777777
Q ss_pred Cce-ec--CCHHHHHHHHH
Q psy14166 184 GHL-YG--TSSDSVLELVN 199 (264)
Q Consensus 184 g~~-YG--t~~~si~~vl~ 199 (264)
.|+ ++ .+.+.+.++++
T Consensus 1331 eNLd~~~~~tdeei~~Al~ 1349 (1622)
T PLN03130 1331 FNLDPFNEHNDADLWESLE 1349 (1622)
T ss_pred HHhCcCCCCCHHHHHHHHH
Confidence 663 32 24455665555
No 277
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.90 E-value=0.00089 Score=59.03 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 54 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERFYD 54 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 468999999999999999999998864
No 278
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.89 E-value=0.00084 Score=60.70 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (271)
T PRK13638 26 LSPVTGLVGANGCGKSTLFMNLSGLLR 52 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 468999999999999999999998764
No 279
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.89 E-value=0.00082 Score=59.28 Aligned_cols=26 Identities=23% Similarity=0.472 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+||+|+|||||++.|+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999999873
No 280
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.89 E-value=0.0009 Score=59.73 Aligned_cols=27 Identities=37% Similarity=0.583 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 32 KNSITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 469999999999999999999998754
No 281
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.89 E-value=0.00084 Score=60.50 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 568999999999999999999998865
No 282
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.89 E-value=0.0009 Score=58.92 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998865
No 283
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=96.89 E-value=0.00089 Score=60.63 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998854
No 284
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.88 E-value=0.00097 Score=59.72 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSARLA 57 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 569999999999999999999998864
No 285
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.88 E-value=0.00095 Score=58.19 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+..++|+||+|+|||||++.|+...+.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 63 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLHV 63 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 4689999999999999999999998653
No 286
>COG1160 Predicted GTPases [General function prediction only]
Probab=96.88 E-value=0.00061 Score=66.04 Aligned_cols=61 Identities=21% Similarity=0.292 Sum_probs=50.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCHHHHHHHH
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSHETMTSLI 171 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~~~f~~~i 171 (264)
+--|+|+|-++||||||.|+|+.... ....+++-|||.+-.. |.+|..|.++|.+-+.+..
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR-~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ 240 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEER-VIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKG 240 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCce-EEecCCCCccccceeeeEEECCeEEEEEECCCCCccc
Confidence 46799999999999999999998864 3556788999998654 4569999999988887653
No 287
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.88 E-value=0.001 Score=57.43 Aligned_cols=28 Identities=32% Similarity=0.604 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
++.+++|+|++|+|||||++.|+...+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLSPP 52 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5699999999999999999999988653
No 288
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.88 E-value=0.00096 Score=58.67 Aligned_cols=28 Identities=32% Similarity=0.547 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~ 53 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFYDV 53 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 5689999999999999999999988653
No 289
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.88 E-value=0.00095 Score=57.29 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+||+|+|||||++.|+...
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999999754
No 290
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.88 E-value=0.0011 Score=55.89 Aligned_cols=27 Identities=37% Similarity=0.598 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 468999999999999999999998865
No 291
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.88 E-value=0.001 Score=57.81 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 50 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFIEP 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5699999999999999999999998653
No 292
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.88 E-value=0.001 Score=57.98 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++.+++|+||+|+|||||++.|+...+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 468999999999999999999998754
No 293
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.88 E-value=0.00084 Score=57.71 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+|.|.||||||||||++.|.....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988754
No 294
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.87 E-value=0.001 Score=57.51 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++.+++|+||+|+|||||++.|+...+
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 568999999999999999999998764
No 295
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.87 E-value=0.001 Score=60.14 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=25.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
++.+++|+||+|+|||||++.|+...+.
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p 52 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKLKP 52 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 5699999999999999999999998753
No 296
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.87 E-value=0.00096 Score=60.26 Aligned_cols=27 Identities=19% Similarity=0.455 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 468999999999999999999998864
No 297
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.87 E-value=0.00097 Score=59.75 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+||+|+|||||++.|+...
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 46899999999999999999999875
No 298
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.87 E-value=0.001 Score=58.19 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGILRP 52 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4689999999999999999999998653
No 299
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.86 E-value=0.00099 Score=58.51 Aligned_cols=27 Identities=33% Similarity=0.651 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998754
No 300
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=96.86 E-value=0.00099 Score=59.67 Aligned_cols=26 Identities=38% Similarity=0.627 Sum_probs=24.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+||+|+|||||++.|+...
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 46899999999999999999999875
No 301
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.86 E-value=0.001 Score=58.87 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~~ 72 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 468999999999999999999998754
No 302
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.86 E-value=0.00097 Score=60.71 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~laG~~~ 52 (272)
T PRK13547 26 PGRVTALLGRNGAGKSTLLKALAGDLT 52 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998764
No 303
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.86 E-value=0.001 Score=60.42 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 58 (280)
T PRK13649 32 DGSYTAFIGHTGSGKSTIMQLLNGLHV 58 (280)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998854
No 304
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=96.86 E-value=0.00099 Score=60.03 Aligned_cols=28 Identities=39% Similarity=0.576 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 63 (265)
T TIGR02769 36 EGETVGLLGRSGCGKSTLARLLLGLEKP 63 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5699999999999999999999998643
No 305
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=96.86 E-value=0.00098 Score=60.25 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQIA 58 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998864
No 306
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=96.85 E-value=0.001 Score=59.55 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 57 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFLEKP 57 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5699999999999999999999998653
No 307
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=96.85 E-value=0.0011 Score=59.94 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 38 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p 65 (267)
T PRK15112 38 EGQTLAIIGENGSGKSTLAKMLAGMIEP 65 (267)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 4689999999999999999999998653
No 308
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.85 E-value=0.001 Score=59.13 Aligned_cols=27 Identities=30% Similarity=0.591 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 468999999999999999999997653
No 309
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.84 E-value=0.001 Score=60.16 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 61 (271)
T PRK13632 34 EGEYVAILGHNGSGKSTISKILTGLLKP 61 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5689999999999999999999998653
No 310
>COG3911 Predicted ATPase [General function prediction only]
Probab=96.84 E-value=0.0018 Score=54.60 Aligned_cols=60 Identities=17% Similarity=0.286 Sum_probs=37.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCC-CCCCCcceeecCHHHHHHHH
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKP-GEEDGKEYHFVSHETMTSLI 171 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~-gE~~G~dY~fvs~~~f~~~i 171 (264)
+.+++||.|.||+|||||++.|.... |....-.-++-... .-..|...-+.|...|.+.+
T Consensus 8 R~~~fIltGgpGaGKTtLL~aLa~~G---fatvee~~r~ii~~es~~gg~~lPW~D~~afael~ 68 (183)
T COG3911 8 RHKRFILTGGPGAGKTTLLAALARAG---FATVEEAGRDIIALESAQGGTALPWTDPGAFAELV 68 (183)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHcC---ceeeccchhhHHHHHHhcCCCcCCccChHHHHHHH
Confidence 45799999999999999999999763 33221111111110 01234566667877777654
No 311
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.84 E-value=0.0011 Score=57.99 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 66 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENFYQP 66 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 5689999999999999999999988653
No 312
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.84 E-value=0.0011 Score=61.14 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 44 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTLLR 44 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998754
No 313
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.84 E-value=0.0011 Score=57.76 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 52 (218)
T cd03290 26 TGQLTMIVGQVGCGKSSLLLAILGEMQ 52 (218)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 468999999999999999999998854
No 314
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.84 E-value=0.0015 Score=56.63 Aligned_cols=26 Identities=42% Similarity=0.664 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
++..+.|+||||+|||||+-.|+..+
T Consensus 35 ~Ge~vaiVG~SGSGKSTLl~vlAGLd 60 (228)
T COG4181 35 RGETVAIVGPSGSGKSTLLAVLAGLD 60 (228)
T ss_pred CCceEEEEcCCCCcHHhHHHHHhcCC
Confidence 56899999999999999999999875
No 315
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.84 E-value=0.0011 Score=57.14 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 568999999999999999999998754
No 316
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.83 E-value=0.001 Score=52.22 Aligned_cols=22 Identities=36% Similarity=0.687 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhcC
Q psy14166 113 VVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 113 ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
|+|.||+|+|||++++.|++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999999875
No 317
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.83 E-value=0.0011 Score=58.38 Aligned_cols=27 Identities=37% Similarity=0.550 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 73 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 568999999999999999999998754
No 318
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=96.83 E-value=0.0011 Score=59.80 Aligned_cols=27 Identities=33% Similarity=0.565 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 44 EKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 469999999999999999999998753
No 319
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.82 E-value=0.0011 Score=60.10 Aligned_cols=27 Identities=37% Similarity=0.609 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 64 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRMND 64 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 568999999999999999999998753
No 320
>PRK12338 hypothetical protein; Provisional
Probab=96.82 E-value=0.0026 Score=59.57 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+.+|+|.|+||+||||++..|+...+
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~ 29 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLN 29 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999998864
No 321
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.82 E-value=0.0011 Score=59.60 Aligned_cols=26 Identities=35% Similarity=0.557 Sum_probs=24.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+||+|+|||||++.|+...
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 46899999999999999999999875
No 322
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.82 E-value=0.0016 Score=57.44 Aligned_cols=37 Identities=27% Similarity=0.440 Sum_probs=28.2
Q ss_pred cchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 95 PTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 95 ~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
...|.|..-. . .+..+|++||||||||||+|.++..-
T Consensus 19 ~~le~vsL~i-a--~ge~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 19 SALEDVSLTI-A--SGELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred hhhhccceee-c--CCCEEEEEcCCCccHHHHHHHHhcCc
Confidence 3455555322 2 46899999999999999999999864
No 323
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.82 E-value=0.0014 Score=57.48 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
++..+.|+||||+|||||++.|....
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh
Confidence 56899999999999999999988763
No 324
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.82 E-value=0.0011 Score=58.57 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 53 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGKTR 53 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998754
No 325
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.82 E-value=0.001 Score=58.65 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (237)
T PRK11614 30 QGEIVTLIGANGAGKTTLLGTLCGDPR 56 (237)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 568999999999999999999998764
No 326
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=96.81 E-value=0.0014 Score=56.29 Aligned_cols=54 Identities=19% Similarity=0.377 Sum_probs=34.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCCCCcccc--ccccCCCCCC--CCCCCcceeecCHHHH
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDPDKFTQV--TPYTTRPKKP--GEEDGKEYHFVSHETM 167 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~--v~~TTR~~r~--gE~~G~dY~fvs~~~f 167 (264)
.|+|+|.+|||||||.|.|+.... |... .+.+|+.... .+.+|..+.++|...|
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~--~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~ 59 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREV--FESKLSASSVTKTCQKESAVWDGRRVNVIDTPGL 59 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCc--cccccCCCCcccccceeeEEECCeEEEEEECcCC
Confidence 589999999999999999997643 2111 2234444322 2345666666665443
No 327
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=96.81 E-value=0.0012 Score=59.64 Aligned_cols=27 Identities=37% Similarity=0.582 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 71 (267)
T PRK14237 45 KNKITALIGPSGSGKSTYLRSLNRMND 71 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 568999999999999999999998763
No 328
>PTZ00301 uridine kinase; Provisional
Probab=96.81 E-value=0.00099 Score=58.73 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+|.|.||||||||||++.|++.
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHH
Confidence 58999999999999999988654
No 329
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.81 E-value=0.0011 Score=59.47 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 53 (258)
T PRK13548 27 PGEVVAILGPNGAGKSTLLRALSGELS 53 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999999854
No 330
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.81 E-value=0.0011 Score=51.37 Aligned_cols=23 Identities=43% Similarity=0.716 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 113 VVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 113 ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
|+++|++|||||||++.|+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999998753
No 331
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.81 E-value=0.0012 Score=58.86 Aligned_cols=27 Identities=41% Similarity=0.655 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14249 29 ERQITAIIGPSGCGKSTLLRALNRMND 55 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 468999999999999999999999865
No 332
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=96.81 E-value=0.0011 Score=59.67 Aligned_cols=28 Identities=36% Similarity=0.479 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 59 (265)
T PRK10253 32 DGHFTAIIGPNGCGKSTLLRTLSRLMTP 59 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 4689999999999999999999998653
No 333
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=96.80 E-value=0.0011 Score=60.98 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 55 (303)
T TIGR01288 29 RGECFGLLGPNGAGKSTIARMLLGMIS 55 (303)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998754
No 334
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.80 E-value=0.0011 Score=63.03 Aligned_cols=28 Identities=32% Similarity=0.318 Sum_probs=25.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||||+|||||++.|....+.
T Consensus 18 ~Gei~~l~G~sGsGKSTLLr~L~Gl~~p 45 (363)
T TIGR01186 18 KGEIFVIMGLSGSGKSTTVRMLNRLIEP 45 (363)
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCCC
Confidence 5699999999999999999999998754
No 335
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.80 E-value=0.0012 Score=58.82 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+||+|+|||||++.|+...
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 29 ENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 46899999999999999999999875
No 336
>PRK15453 phosphoribulokinase; Provisional
Probab=96.80 E-value=0.002 Score=59.40 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
++.+|+|.|.|||||||+++.|...+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998654
No 337
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.80 E-value=0.0012 Score=58.62 Aligned_cols=27 Identities=44% Similarity=0.679 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (249)
T PRK14253 28 ARQVTALIGPSGCGKSTLLRCLNRMND 54 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 468999999999999999999998754
No 338
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=96.80 E-value=0.0012 Score=59.33 Aligned_cols=27 Identities=44% Similarity=0.605 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 29 HGEMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 468999999999999999999998864
No 339
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=96.80 E-value=0.0011 Score=57.26 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHh
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIA 132 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~ 132 (264)
..|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~ 24 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE 24 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 340
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.79 E-value=0.0012 Score=62.54 Aligned_cols=28 Identities=39% Similarity=0.572 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||||+|||||++.|+...+.
T Consensus 29 ~Ge~~~llG~sGsGKSTLLr~iaGl~~p 56 (356)
T PRK11650 29 DGEFIVLVGPSGCGKSTLLRMVAGLERI 56 (356)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCCC
Confidence 4689999999999999999999998653
No 341
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.79 E-value=0.002 Score=58.82 Aligned_cols=27 Identities=33% Similarity=0.572 Sum_probs=24.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++.++.|+|.||||||||.+.|+...+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 579999999999999999999998865
No 342
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=96.79 E-value=0.0012 Score=58.99 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|....+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 54 (254)
T PRK10418 28 RGRVLALVGGSGSGKSLTCAAALGILP 54 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998754
No 343
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.78 E-value=0.0013 Score=59.10 Aligned_cols=27 Identities=33% Similarity=0.619 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~~ 55 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998754
No 344
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.78 E-value=0.0013 Score=58.55 Aligned_cols=27 Identities=37% Similarity=0.591 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+|++|+|||||++.|+...+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 29 EKELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccc
Confidence 468999999999999999999998763
No 345
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=96.77 E-value=0.0013 Score=58.55 Aligned_cols=26 Identities=38% Similarity=0.638 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+||+|+|||||++.|+...
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 28 ENQVTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 46899999999999999999999864
No 346
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=96.77 E-value=0.0012 Score=61.07 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=25.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
++..++|+||+|+|||||++.|....+.
T Consensus 32 ~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p 59 (305)
T PRK13651 32 QGEFIAIIGQTGSGKTTFIEHLNALLLP 59 (305)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 5689999999999999999999998654
No 347
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.77 E-value=0.0013 Score=59.81 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (274)
T PRK13647 30 EGSKTALLGPNGAGKSTLLLHLNGIYL 56 (274)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 569999999999999999999998764
No 348
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.76 E-value=0.0013 Score=60.13 Aligned_cols=28 Identities=32% Similarity=0.380 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.|.+++|+||+|+|||||++.|+...+.
T Consensus 32 ~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p 59 (287)
T PRK13641 32 EGSFVALVGHTGSGKSTLMQHFNALLKP 59 (287)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5699999999999999999999988653
No 349
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.76 E-value=0.0013 Score=59.29 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+||+|+|||||++.|+...
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 46 KHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 56899999999999999999999853
No 350
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.76 E-value=0.0013 Score=62.33 Aligned_cols=28 Identities=32% Similarity=0.570 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||||+|||||++.|+...+.
T Consensus 31 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p 58 (351)
T PRK11432 31 QGTMVTLLGPSGCGKTTVLRLVAGLEKP 58 (351)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCCC
Confidence 4689999999999999999999998654
No 351
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.76 E-value=0.0014 Score=57.81 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=25.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~~~ 52 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFETP 52 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4699999999999999999999998654
No 352
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.76 E-value=0.0013 Score=58.91 Aligned_cols=27 Identities=37% Similarity=0.568 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 63 (258)
T PRK14268 37 KNSVTALIGPSGCGKSTFIRCLNRMND 63 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 468999999999999999999998754
No 353
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.76 E-value=0.0014 Score=59.39 Aligned_cols=27 Identities=33% Similarity=0.562 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.++.|+||+|+|||||++.++...+
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~ 55 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLK 55 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 568999999999999999999999544
No 354
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.76 E-value=0.0013 Score=57.22 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=23.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+++|+||+|+|||||++.|+...+
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999998864
No 355
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=96.75 E-value=0.0013 Score=61.79 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 30 ~Gei~~iiG~nGsGKSTLlk~L~Gl~~ 56 (343)
T PRK11153 30 AGEIFGVIGASGAGKSTLIRCINLLER 56 (343)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 468999999999999999999998864
No 356
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=96.75 E-value=0.0012 Score=59.10 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=27.1
Q ss_pred chHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 96 TYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 96 ~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+|.++...+++ .+.+++|+||+|+|||||++.|.-..
T Consensus 13 ~~~~~~~~~~~--~~~~~~IvG~NGsGKStll~Ai~~ll 49 (251)
T cd03273 13 SYATRTVISGF--DPQFNAITGLNGSGKSNILDAICFVL 49 (251)
T ss_pred ccCcCEeeccC--CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45554433333 23799999999999999999998654
No 357
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=96.75 E-value=0.0012 Score=58.62 Aligned_cols=25 Identities=40% Similarity=0.612 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+.+++|+||+|+|||||++.|+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 30 PNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4689999999999999999999876
No 358
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.75 E-value=0.0014 Score=58.42 Aligned_cols=26 Identities=38% Similarity=0.603 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+||+|+|||||++.|+...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14255 30 QNEITALIGPSGCGKSTYLRTLNRMN 55 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 46899999999999999999998864
No 359
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=96.75 E-value=0.0014 Score=63.11 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++.+++|+||+|+|||||++.|....+
T Consensus 28 ~Geiv~liGpNGaGKSTLLk~LaGll~ 54 (402)
T PRK09536 28 EGSLVGLVGPNGAGKTTLLRAINGTLT 54 (402)
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 569999999999999999999998754
No 360
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.75 E-value=0.0013 Score=62.84 Aligned_cols=28 Identities=25% Similarity=0.521 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||||||||||++.|+...+.
T Consensus 39 ~Ge~~~LlGpsGsGKSTLLr~IaGl~~p 66 (375)
T PRK09452 39 NGEFLTLLGPSGCGKTTVLRLIAGFETP 66 (375)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 5689999999999999999999998653
No 361
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.75 E-value=0.017 Score=53.68 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+-+|+|.|+|||||||++..|+..++
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l~ 117 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRLG 117 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788899999999999999998864
No 362
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.75 E-value=0.0064 Score=54.00 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
++|+|.|++||||||+++.|++...+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHH
Confidence 58999999999999999999987543
No 363
>KOG3079|consensus
Probab=96.74 E-value=0.0072 Score=52.46 Aligned_cols=121 Identities=16% Similarity=0.190 Sum_probs=69.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHhcCCCCcccc-ccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCce
Q psy14166 108 TLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQV-TPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHL 186 (264)
Q Consensus 108 ~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~-v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~ 186 (264)
..+.+|.++|++||||-|...++++.++ |... .-.--|..... .|-+|. ..+...+.+|..+-..
T Consensus 6 ~~~~IifVlGGPGsgKgTqC~kiv~ky~--ftHlSaGdLLR~E~~~--~gse~g----~~I~~~i~~G~iVP~e------ 71 (195)
T KOG3079|consen 6 DKPPIIFVLGGPGSGKGTQCEKIVEKYG--FTHLSAGDLLRAEIAS--AGSERG----ALIKEIIKNGDLVPVE------ 71 (195)
T ss_pred cCCCEEEEEcCCCCCcchHHHHHHHHcC--ceeecHHHHHHHHHcc--ccChHH----HHHHHHHHcCCcCcHH------
Confidence 3567999999999999999999999986 4322 11111221111 133333 2455666777775432
Q ss_pred ecCCHHHHHHHHHcCC---eEEEEcCHHHHHHHhc--CC---CCcEEEEEeCCChHHHHHHHHhhc
Q psy14166 187 YGTSSDSVLELVNSGR---VAVLNPAYQSLKVLRS--PA---FKPLVLFIAPPPFAALKESRITAF 244 (264)
Q Consensus 187 YGt~~~si~~vl~~Gk---i~vld~~~~~~~~Lr~--~~---~~p~vIfI~pps~e~l~~~r~~~~ 244 (264)
+..+-+++.+.+-. .-|+|+-|...+++.. .. ..-+++|+++|-...|++...+..
T Consensus 72 --i~~~LL~~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q 135 (195)
T KOG3079|consen 72 --ITLSLLEEAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQ 135 (195)
T ss_pred --HHHHHHHHHHHhcCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcc
Confidence 12233333333221 1688888876666552 11 235799999996666665444433
No 364
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=96.74 E-value=0.0014 Score=58.59 Aligned_cols=27 Identities=33% Similarity=0.520 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (255)
T PRK11231 27 TGKITALIGPNGCGKSTLLKCFARLLT 53 (255)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 468999999999999999999998754
No 365
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.74 E-value=0.0015 Score=58.27 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+||+|+|||||++.|+...
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 29 ENKITALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 46899999999999999999999874
No 366
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=96.74 E-value=0.0014 Score=61.36 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+|+||+|||||++.|+...+
T Consensus 32 ~Ge~~~ivG~sGsGKSTLl~~i~Gl~~ 58 (330)
T PRK15093 32 EGEIRGLVGESGSGKSLIAKAICGVTK 58 (330)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 568999999999999999999998864
No 367
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=96.74 E-value=0.0014 Score=55.26 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
...-|+|+|++|+|||||+++|...
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~ 41 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 5578999999999999999999875
No 368
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=96.74 E-value=0.0014 Score=62.12 Aligned_cols=28 Identities=36% Similarity=0.622 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||||+|||||++.|+...+.
T Consensus 27 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p 54 (353)
T PRK10851 27 SGQMVALLGPSGSGKTTLLRIIAGLEHQ 54 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4689999999999999999999998653
No 369
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.73 E-value=0.0016 Score=50.85 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
++.++|+||+|+|||+|++.++...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999999875
No 370
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.73 E-value=0.0016 Score=55.28 Aligned_cols=121 Identities=21% Similarity=0.263 Sum_probs=63.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCcccccc-------ccCCCCCCCCCCCcceeecCHHHHHHHHH--cCCccee
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTP-------YTTRPKKPGEEDGKEYHFVSHETMTSLIS--AGKMIEF 179 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~-------~TTR~~r~gE~~G~dY~fvs~~~f~~~i~--~~~flE~ 179 (264)
++.++.|+||||+|||||..-++......|...-. .++-|. ...-....|.|.-.|...-- +-.|.--
T Consensus 27 ~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa---~qRq~GiLFQD~lLFphlsVg~Nl~fAlp 103 (213)
T COG4136 27 KGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA---AQRQIGILFQDALLFPHLSVGQNLLFALP 103 (213)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch---hhhheeeeecccccccccccccceEEecC
Confidence 56899999999999999999888875544533210 011111 01113344555555544321 1122222
Q ss_pred eeecCceecCCHHHHHHHHH-cCCeEEEEcCHHH--------HHHHhcCCCCcEEEEEeCCChHHH
Q psy14166 180 GEYKGHLYGTSSDSVLELVN-SGRVAVLNPAYQS--------LKVLRSPAFKPLVLFIAPPPFAAL 236 (264)
Q Consensus 180 ~~~~g~~YGt~~~si~~vl~-~Gki~vld~~~~~--------~~~Lr~~~~~p~vIfI~pps~e~l 236 (264)
.+.+|+.. ...+..+++ .|-.-.++-+|+. +-.+|..-..|..+.++.| +..|
T Consensus 104 ~~~KG~aR---r~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEP-FS~L 165 (213)
T COG4136 104 ATLKGNAR---RNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEP-FSRL 165 (213)
T ss_pred cccccHHH---HhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCc-hhHH
Confidence 33445411 222333333 4555566777752 2233333457999999998 3344
No 371
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.73 E-value=0.0015 Score=58.15 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (252)
T PRK14272 29 RGTVNALIGPSGCGKTTFLRAINRMHD 55 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 468999999999999999999998753
No 372
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=96.73 E-value=0.0014 Score=62.43 Aligned_cols=27 Identities=41% Similarity=0.649 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||||+|||||++.|+...+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLL~~iaGl~~ 54 (369)
T PRK11000 28 EGEFVVFVGPSGCGKSTLLRMIAGLED 54 (369)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 468999999999999999999998854
No 373
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.73 E-value=0.0014 Score=59.82 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|....+.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p 59 (286)
T PRK13646 32 QGKYYAIVGQTGSGKSTLIQNINALLKP 59 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4689999999999999999999988653
No 374
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.73 E-value=0.0014 Score=59.69 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.|.+++|+||+|+|||||++.|+...+.
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~i~G~~~p 59 (279)
T PRK13635 32 EGEWVAIVGHNGSGKSTLAKLLNGLLLP 59 (279)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 5689999999999999999999988653
No 375
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.72 E-value=0.0014 Score=59.46 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~ 54 (275)
T PRK13639 27 KGEMVALLGPNGAGKSTLFLHFNGILKP 54 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4689999999999999999999987653
No 376
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=96.72 E-value=0.0014 Score=61.87 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 22 ~Gei~~l~G~nGsGKSTLl~~iaGl~~ 48 (354)
T TIGR02142 22 GQGVTAIFGRSGSGKTTLIRLIAGLTR 48 (354)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999999864
No 377
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=96.72 E-value=0.0015 Score=53.50 Aligned_cols=53 Identities=23% Similarity=0.382 Sum_probs=33.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHH
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHE 165 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~ 165 (264)
+.|+|+|.+|||||||+++|...... ....+.+|..+..+. .++..+.++|..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~ 55 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE--VAPYPFTTKSLFVGHFDYKYLRWQVIDTP 55 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc--cCCCCCcccceeEEEEccCceEEEEEECC
Confidence 46899999999999999999976431 122345555543322 234455555543
No 378
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=96.72 E-value=0.0014 Score=62.02 Aligned_cols=28 Identities=36% Similarity=0.605 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||||+|||||++.|+...+.
T Consensus 29 ~Ge~~~l~GpsGsGKSTLLr~iaGl~~p 56 (353)
T TIGR03265 29 KGEFVCLLGPSGCGKTTLLRIIAGLERQ 56 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Confidence 4689999999999999999999998653
No 379
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=96.72 E-value=0.0014 Score=58.64 Aligned_cols=28 Identities=36% Similarity=0.618 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...|.
T Consensus 21 ~Gei~~l~G~nGsGKSTLl~~l~Gl~~~ 48 (248)
T PRK03695 21 AGEILHLVGPNGAGKSTLLARMAGLLPG 48 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 5689999999999999999999987653
No 380
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.72 E-value=0.0013 Score=64.70 Aligned_cols=50 Identities=28% Similarity=0.438 Sum_probs=35.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHH
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTS 169 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~ 169 (264)
.+..+.|+||||+|||||++.|....+. .+..| ..||-++.--|++.|-+
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG~w~p-~~G~V----------RLDga~l~qWd~e~lG~ 410 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVGIWPP-TSGSV----------RLDGADLRQWDREQLGR 410 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHccccc-CCCcE----------EecchhhhcCCHHHhcc
Confidence 4678999999999999999999988764 12222 34666655556665544
No 381
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=96.72 E-value=0.0014 Score=59.20 Aligned_cols=27 Identities=41% Similarity=0.672 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 63 (268)
T PRK10419 37 SGETVALLGRSGCGKSTLARLLVGLES 63 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998754
No 382
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.72 E-value=0.0015 Score=58.34 Aligned_cols=26 Identities=42% Similarity=0.662 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+||+|+|||||++.|+...
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 31 KNRVTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccc
Confidence 46899999999999999999999753
No 383
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=96.72 E-value=0.0018 Score=54.54 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
...-|+|+|.+|||||||++.|...
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4467999999999999999999975
No 384
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=96.71 E-value=0.0012 Score=63.31 Aligned_cols=51 Identities=24% Similarity=0.324 Sum_probs=37.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCC---CcceeecCH
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEED---GKEYHFVSH 164 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~---G~dY~fvs~ 164 (264)
-|+|+|.++||||||+|.|....|. ....|.|||.|..+-+. +..+.|+|-
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~--vs~~p~TT~~p~~Giv~~~~~~~i~~vDt 214 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPK--VADYPFTTLVPNLGVVRVDDERSFVVADI 214 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCccc--ccCCCCCccCcEEEEEEeCCCcEEEEEeC
Confidence 4899999999999999999987652 24457899998766432 233555543
No 385
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.71 E-value=0.0015 Score=59.64 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 32 ~Ge~~~I~G~nGaGKSTLl~~l~G~~~ 58 (282)
T PRK13640 32 RGSWTALIGHNGSGKSTISKLINGLLL 58 (282)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcccC
Confidence 468999999999999999999999864
No 386
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=96.71 E-value=0.0014 Score=61.80 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||||+|||||++.|+...+
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~iaGl~~ 49 (352)
T PRK11144 23 AQGITAIFGRSGAGKTSLINAISGLTR 49 (352)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998854
No 387
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.71 E-value=0.0016 Score=58.08 Aligned_cols=26 Identities=35% Similarity=0.612 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
++.+++|+||+|+|||||++.|+...
T Consensus 30 ~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 30 KREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 46899999999999999999999875
No 388
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.71 E-value=0.0015 Score=56.18 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+..++|+||+|+|||||++.|+...
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999999876
No 389
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.71 E-value=0.0016 Score=58.50 Aligned_cols=27 Identities=30% Similarity=0.570 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+|++|+|||||++.|+...+
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~Gl~~ 58 (259)
T PRK14260 32 RNKVTAIIGPSGCGKSTFIKTLNRISE 58 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 468999999999999999999998754
No 390
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=96.71 E-value=0.0016 Score=56.87 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 30 ~G~~~~I~G~nGsGKStLl~~l~G~~~ 56 (220)
T TIGR02982 30 PGEIVILTGPSGSGKTTLLTLIGGLRS 56 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 568999999999999999999998765
No 391
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=96.71 E-value=0.0014 Score=58.54 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 52 (256)
T TIGR03873 26 PGSLTGLLGPNGSGKSTLLRLLAGALR 52 (256)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 469999999999999999999998765
No 392
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0014 Score=58.84 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+.+.+|+||+|+|||||++.|+..
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~ 53 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGH 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999999999975
No 393
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=96.70 E-value=0.0024 Score=56.33 Aligned_cols=41 Identities=17% Similarity=0.075 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKP 151 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~ 151 (264)
.+..|+|=|.-||||||+++.|.+...... . -..+||.|..
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g-~-~v~~trEP~~ 42 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERG-I-KVVLTREPGG 42 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcC-C-eEEEEeCCCC
Confidence 358999999999999999999998765421 1 2346888864
No 394
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=96.70 E-value=0.0011 Score=59.24 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=40.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccc---cccC-CCCCCCCCCCcceeecCHHHHHHH
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVT---PYTT-RPKKPGEEDGKEYHFVSHETMTSL 170 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v---~~TT-R~~r~gE~~G~dY~fvs~~~f~~~ 170 (264)
.+.+++|+|++|+|||||++.|+...+..=+.+. ...| .+|..--..|..|....+.-|..+
T Consensus 28 ~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~L 93 (237)
T COG0410 28 RGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRL 93 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhC
Confidence 5799999999999999999999998764322221 1223 333222245677766666666554
No 395
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=96.70 E-value=0.0015 Score=61.10 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+|+||||||||++.|+...+
T Consensus 32 ~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 32 QGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 569999999999999999999998764
No 396
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=96.69 E-value=0.0016 Score=57.61 Aligned_cols=28 Identities=39% Similarity=0.612 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 52 (237)
T TIGR00968 25 TGSLVALLGPSGSGKSTLLRIIAGLEQP 52 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4689999999999999999999987653
No 397
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.69 E-value=0.0016 Score=59.31 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (279)
T PRK13650 32 QGEWLSIIGHNGSGKSTTVRLIDGLLE 58 (279)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 469999999999999999999998754
No 398
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.69 E-value=0.0012 Score=52.54 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhc
Q psy14166 113 VVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 113 ivLiGpsGvGKsTL~~~L~~~ 133 (264)
|+|+|++|||||||+++|...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999999875
No 399
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=96.68 E-value=0.0016 Score=58.91 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+|++|+|||||++.|++..
T Consensus 49 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 49 ENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 56899999999999999999999875
No 400
>PRK00089 era GTPase Era; Reviewed
Probab=96.68 E-value=0.0011 Score=60.32 Aligned_cols=52 Identities=29% Similarity=0.397 Sum_probs=34.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCC--CCcceeecC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEE--DGKEYHFVS 163 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~--~G~dY~fvs 163 (264)
-.|+|+|++|||||||+|.|+..... .....+.|||..-.+-. ++..+.|+|
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~-~vs~~~~tt~~~i~~i~~~~~~qi~~iD 59 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKIS-IVSPKPQTTRHRIRGIVTEDDAQIIFVD 59 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCcee-ecCCCCCcccccEEEEEEcCCceEEEEE
Confidence 57999999999999999999876321 22345677776532211 224455554
No 401
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.68 E-value=0.0017 Score=59.49 Aligned_cols=27 Identities=37% Similarity=0.357 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|....+
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~l~Gl~~ 58 (287)
T PRK13637 32 DGEFVGLIGHTGSGKSTLIQHLNGLLK 58 (287)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 569999999999999999999998864
No 402
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=96.68 E-value=0.0018 Score=53.03 Aligned_cols=38 Identities=29% Similarity=0.401 Sum_probs=26.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC
Q psy14166 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG 152 (264)
Q Consensus 113 ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g 152 (264)
|+|+|.+|||||||++.|....+. ....+.+|+.+..+
T Consensus 3 v~ivG~~~~GKStl~~~l~~~~~~--v~~~~~~t~~~~~~ 40 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNAKPK--IADYPFTTLVPNLG 40 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcCCcc--ccCCCccccCCcce
Confidence 799999999999999999865431 11234566665433
No 403
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.68 E-value=0.0018 Score=53.47 Aligned_cols=24 Identities=13% Similarity=0.439 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
...|+|+|++|||||||++.|...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 456999999999999999999875
No 404
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.67 E-value=0.0013 Score=52.94 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q psy14166 113 VVLIGPSGVGRSELKRRLIA 132 (264)
Q Consensus 113 ivLiGpsGvGKsTL~~~L~~ 132 (264)
|+|+|++|+|||||++.|..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 78999999999999999994
No 405
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.67 E-value=0.0013 Score=58.23 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+|.|.||||||||||++.|....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998765
No 406
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.67 E-value=0.0015 Score=54.49 Aligned_cols=24 Identities=38% Similarity=0.740 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+.|.|+||+|||||||++.|.+..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 578999999999999999998764
No 407
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.67 E-value=0.0017 Score=58.88 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~~p 76 (264)
T PRK13546 49 EGDVIGLVGINGSGKSTLSNIIGGSLSP 76 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 4689999999999999999999998653
No 408
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=96.67 E-value=0.0015 Score=52.27 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
-.|+|+|++|+|||||.+.|....
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~ 25 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRD 25 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCc
Confidence 468999999999999999998653
No 409
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.67 E-value=0.0017 Score=59.03 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.|.+++|+|++|+|||||++.|+...+
T Consensus 29 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 55 (277)
T PRK13652 29 RNSRIAVIGPNGAGKSTLFRHFNGILK 55 (277)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 569999999999999999999998854
No 410
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.66 E-value=0.0017 Score=58.40 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=24.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+|++|+|||||++.|+...+
T Consensus 32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 58 (261)
T PRK14258 32 QSKVTAIIGPSGCGKSTFLKCLNRMNE 58 (261)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccC
Confidence 569999999999999999999999865
No 411
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.66 E-value=0.0016 Score=56.20 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+.+++|+||+|+|||||++.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999999999987
No 412
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.66 E-value=0.0018 Score=57.62 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+||+|+|||||++.|+...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45899999999999999999999874
No 413
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=96.66 E-value=0.0017 Score=60.78 Aligned_cols=28 Identities=29% Similarity=0.553 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+|+||+|||||++.|+...+.
T Consensus 40 ~Ge~~~IvG~sGsGKSTLl~~l~gl~~p 67 (327)
T PRK11308 40 RGKTLAVVGESGCGKSTLARLLTMIETP 67 (327)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCC
Confidence 5689999999999999999999998653
No 414
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.66 E-value=0.0017 Score=52.38 Aligned_cols=24 Identities=50% Similarity=0.895 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.|+|+||+|+|||+|++.|+....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh
Confidence 489999999999999999998764
No 415
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.65 E-value=0.0018 Score=58.88 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (274)
T PRK13644 27 KGEYIGIIGKNGSGKSTLALHLNGLLR 53 (274)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 568999999999999999999998864
No 416
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=96.65 E-value=0.0017 Score=59.07 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|....+.
T Consensus 35 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 62 (280)
T PRK13633 35 KGEFLVILGRNGSGKSTIAKHMNALLIP 62 (280)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4689999999999999999999988653
No 417
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=96.64 E-value=0.0013 Score=53.98 Aligned_cols=51 Identities=25% Similarity=0.346 Sum_probs=32.6
Q ss_pred EEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CC-CcceeecCHHHH
Q psy14166 115 LIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--ED-GKEYHFVSHETM 167 (264)
Q Consensus 115 LiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~-G~dY~fvs~~~f 167 (264)
|+|++|||||||+++|..... .....+.||+.+..+. .+ +..+.++|...+
T Consensus 1 iiG~~~~GKStll~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~ 54 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP--KVANYPFTTLEPNLGVVEVPDGARIQVADIPGL 54 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc--cccCCCceeecCcceEEEcCCCCeEEEEecccc
Confidence 689999999999999997642 1223345666654432 33 555556654433
No 418
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=96.64 E-value=0.0018 Score=58.38 Aligned_cols=26 Identities=35% Similarity=0.585 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+||+|+|||||++.|+...
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 60 (264)
T PRK14243 35 KNQITAFIGPSGCGKSTILRCFNRLN 60 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 46999999999999999999999763
No 419
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.63 E-value=0.0018 Score=57.72 Aligned_cols=25 Identities=36% Similarity=0.608 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+.+++|+||+|+|||||++.|+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 28 EKSVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhh
Confidence 4689999999999999999999864
No 420
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.63 E-value=0.0018 Score=58.85 Aligned_cols=27 Identities=30% Similarity=0.592 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 46 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 72 (276)
T PRK14271 46 ARAVTSLMGPTGSGKTTFLRTLNRMND 72 (276)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 468999999999999999999998764
No 421
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=96.63 E-value=0.0016 Score=57.71 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+||+|+|||||++.|+...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 26 PGEVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 56899999999999999999999873
No 422
>KOG1969|consensus
Probab=96.62 E-value=0.012 Score=60.38 Aligned_cols=124 Identities=20% Similarity=0.198 Sum_probs=67.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCcccc-c----------------------c---ccCCCCC--CCCCCCccee
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQV-T----------------------P---YTTRPKK--PGEEDGKEYH 160 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~-v----------------------~---~TTR~~r--~gE~~G~dY~ 160 (264)
..+++.|+||+|.|||||+..++..-. |... | + ..+||.. -.|+||-.-.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG--YsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~ 402 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG--YSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRA 402 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC--ceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHH
Confidence 348999999999999999998887531 2211 0 0 1144443 2467776544
Q ss_pred ecCHHHHHHHHHcCCcceeeeecCceecCCHHHHHHHHHcC---CeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHH
Q psy14166 161 FVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSG---RVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALK 237 (264)
Q Consensus 161 fvs~~~f~~~i~~~~flE~~~~~g~~YGt~~~si~~vl~~G---ki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~ 237 (264)
+|+ .+..++.+..-.++|.-.++- +. +.--..+ +.+|..|+-.....||.......+|++.||+...|-
T Consensus 403 ~Vd--vilslv~a~~k~~~Gkq~~~~-~~-----rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv 474 (877)
T KOG1969|consen 403 AVD--VILSLVKATNKQATGKQAKKD-KK-----RKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRLV 474 (877)
T ss_pred HHH--HHHHHHHhhcchhhcCcccch-hh-----hhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHHH
Confidence 443 355555444333333322221 11 1111111 234555665555555544445668888888888877
Q ss_pred HHHHh
Q psy14166 238 ESRIT 242 (264)
Q Consensus 238 ~~r~~ 242 (264)
++.+.
T Consensus 475 ~RL~~ 479 (877)
T KOG1969|consen 475 ERLNE 479 (877)
T ss_pred HHHHH
Confidence 65444
No 423
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.62 E-value=0.0019 Score=59.19 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|+...+.
T Consensus 62 ~Ge~~~liG~NGsGKSTLl~~I~Gl~~p 89 (282)
T cd03291 62 KGEMLAITGSTGSGKTSLLMLILGELEP 89 (282)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5689999999999999999999987653
No 424
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=96.62 E-value=0.0016 Score=57.92 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+.+++|+|++|+|||||++.|+..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 32 KGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 4689999999999999999999985
No 425
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.62 E-value=0.0018 Score=59.25 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+..++|+||+|+|||||++.|....+.
T Consensus 31 ~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p 58 (288)
T PRK13643 31 KGSYTALIGHTGSGKSTLLQHLNGLLQP 58 (288)
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 5689999999999999999999988643
No 426
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.62 E-value=0.0019 Score=59.09 Aligned_cols=27 Identities=30% Similarity=0.551 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 64 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 90 (285)
T PRK14254 64 ENQVTAMIGPSGCGKSTFLRCINRMND 90 (285)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 568999999999999999999998753
No 427
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.61 E-value=0.0019 Score=60.30 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+|++|+|||||++.|....+.
T Consensus 51 ~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p 78 (320)
T PRK13631 51 KNKIYFIIGNSGSGKSTLVTHFNGLIKS 78 (320)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5689999999999999999999988653
No 428
>COG1159 Era GTPase [General function prediction only]
Probab=96.61 E-value=0.0012 Score=60.86 Aligned_cols=53 Identities=28% Similarity=0.357 Sum_probs=37.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCC--cceeecCH
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDG--KEYHFVSH 164 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G--~dY~fvs~ 164 (264)
-.|+|+|.++||||||+|.|++..-. .....+-|||..-.|-... ....|+|.
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~Kis-IvS~k~QTTR~~I~GI~t~~~~QiIfvDT 61 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKIS-IVSPKPQTTRNRIRGIVTTDNAQIIFVDT 61 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceE-eecCCcchhhhheeEEEEcCCceEEEEeC
Confidence 47999999999999999999987532 2344567999876554222 23345553
No 429
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.61 E-value=0.0017 Score=52.16 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+|+|+|++||||||+++.|+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999874
No 430
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.60 E-value=0.002 Score=59.47 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+....
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~~ 56 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 468999999999999999999998753
No 431
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.60 E-value=0.005 Score=55.42 Aligned_cols=106 Identities=16% Similarity=0.254 Sum_probs=54.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCC-ccccccccCCCCCCCCCCCcceeec-CHHHHHHHH-----HcCCcceeee
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDK-FTQVTPYTTRPKKPGEEDGKEYHFV-SHETMTSLI-----SAGKMIEFGE 181 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~-f~~~v~~TTR~~r~gE~~G~dY~fv-s~~~f~~~i-----~~~~flE~~~ 181 (264)
.+..|+|+|++||||||+++.|+...|.. ....+--.+..-.....+...+... ....|...+ .+.+.+-.+|
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigE 205 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGE 205 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESC
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccc
Confidence 35899999999999999999999987654 2222111122111111111111111 122333332 2456777777
Q ss_pred ecCceecCCHHHHHHHHHcCCeE-EEEcCH----HHHHHHhc
Q psy14166 182 YKGHLYGTSSDSVLELVNSGRVA-VLNPAY----QSLKVLRS 218 (264)
Q Consensus 182 ~~g~~YGt~~~si~~vl~~Gki~-vld~~~----~~~~~Lr~ 218 (264)
..+. ..... .++++.|..+ +..++. +++.+|..
T Consensus 206 iR~~---e~~~~-~~a~~tGh~~~~tT~Ha~s~~~~i~Rl~~ 243 (270)
T PF00437_consen 206 IRDP---EAAEA-IQAANTGHLGSLTTLHANSAEDAIERLAD 243 (270)
T ss_dssp E-SC---HHHHH-HHHHHTT-EEEEEEEE-SSHHHHHHHHHH
T ss_pred cCCH---hHHHH-HHhhccCCceeeeeeecCCHHHHHHHHHH
Confidence 6653 22333 5677788877 666664 34555543
No 432
>PRK13976 thymidylate kinase; Provisional
Probab=96.60 E-value=0.0011 Score=58.26 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=28.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKK 150 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r 150 (264)
.+|+|-|.-||||||+++.|.+......+..-.++||.|.
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~ 40 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPG 40 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCC
Confidence 3789999999999999999998764322212234677764
No 433
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=96.60 E-value=0.002 Score=61.25 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=24.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||||+|||||++.|+...+.
T Consensus 30 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p 57 (362)
T TIGR03258 30 AGELLALIGKSGCGKTTLLRAIAGFVKA 57 (362)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4689999999999999999999988643
No 434
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.60 E-value=0.002 Score=58.53 Aligned_cols=26 Identities=35% Similarity=0.682 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+||+|+|||||++.|+...
T Consensus 45 ~Ge~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 45 AKKIIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 46899999999999999999999764
No 435
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=96.59 E-value=0.0019 Score=61.69 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||||+|||||++.|+...+.
T Consensus 44 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p 71 (377)
T PRK11607 44 KGEIFALLGASGCGKSTLLRMLAGFEQP 71 (377)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 4689999999999999999999988643
No 436
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=96.59 E-value=0.0018 Score=57.65 Aligned_cols=50 Identities=26% Similarity=0.409 Sum_probs=33.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVS 163 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs 163 (264)
.++|+|++|||||||++.|....+. ....+.||..+..|. .+|..+.++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~--v~~~~~tT~~~~~g~~~~~~~~i~l~D 53 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE--VAAYEFTTLTCVPGVLEYKGAKIQLLD 53 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc--ccCCCCccccceEEEEEECCeEEEEEE
Confidence 4789999999999999999987542 223456776665542 3454444443
No 437
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.59 E-value=0.021 Score=55.70 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
..+++|.||+|+|||+|++.+...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~ 153 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Confidence 468999999999999999988765
No 438
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.59 E-value=0.0079 Score=56.66 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=28.7
Q ss_pred chHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 96 TYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 96 ~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
..+-+...++.......|.|+|++|||||||++.|+...
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344444445443456799999999999999999987654
No 439
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=96.59 E-value=0.0021 Score=58.16 Aligned_cols=27 Identities=37% Similarity=0.604 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++.+++|+||+|+|||||++.|+...+
T Consensus 50 ~Ge~~~I~G~nGsGKSTLl~~laGl~~ 76 (272)
T PRK14236 50 KNRVTAFIGPSGCGKSTLLRCFNRMND 76 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 569999999999999999999998754
No 440
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.59 E-value=0.0023 Score=52.88 Aligned_cols=27 Identities=37% Similarity=0.571 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+..++|+|++|+|||||++.|....+
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 458999999999999999999988754
No 441
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=96.58 E-value=0.0021 Score=60.71 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||||+|||||++.|....+
T Consensus 30 ~Gei~gIiG~sGaGKSTLlr~I~gl~~ 56 (343)
T TIGR02314 30 AGQIYGVIGASGAGKSTLIRCVNLLER 56 (343)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 468999999999999999999998754
No 442
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=96.57 E-value=0.0019 Score=60.50 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=24.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+|+||+|||||++.|+...+
T Consensus 41 ~Ge~~~ivG~sGsGKSTL~~~l~Gl~~ 67 (330)
T PRK09473 41 AGETLGIVGESGSGKSQTAFALMGLLA 67 (330)
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 569999999999999999999998865
No 443
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.57 E-value=0.0021 Score=57.78 Aligned_cols=26 Identities=35% Similarity=0.594 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+|++|+|||||++.|+...
T Consensus 41 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 66 (265)
T PRK14252 41 EKQVTALIGPSGCGKSTFLRCFNRMH 66 (265)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccc
Confidence 56899999999999999999999864
No 444
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.57 E-value=0.0022 Score=57.53 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++.+++|+|++|+|||||++.|+...+
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 72 (257)
T cd03288 46 PGQKVGICGRTGSGKSSLSLAFFRMVD 72 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcccC
Confidence 468999999999999999999998865
No 445
>PLN02459 probable adenylate kinase
Probab=96.57 E-value=0.0081 Score=54.78 Aligned_cols=111 Identities=16% Similarity=0.129 Sum_probs=57.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCC-CcceeecCHHHHHHHHHcCCcceeeeecCceecC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEED-GKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGT 189 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~-G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt 189 (264)
..|+|+||+||||+|++..|++.+.- -+...-..-|. |+. +-+. -..+...+.+|.++.-. +
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~-~~is~gdllR~----ei~~~t~l----g~~i~~~~~~G~lVPde--------i 92 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGV-PHIATGDLVRE----EIKSSGPL----GAQLKEIVNQGKLVPDE--------I 92 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC-cEEeCcHHHHH----HHhccchh----HHHHHHHHHcCCccCHH--------H
Confidence 35888999999999999999987531 11111111111 100 0000 12344455566654321 1
Q ss_pred CHHHHHHHHHc-----CCeEEEEcCHHHHHHHhcC--CCC-cEEEEEeCCChHHHHHH
Q psy14166 190 SSDSVLELVNS-----GRVAVLNPAYQSLKVLRSP--AFK-PLVLFIAPPPFAALKES 239 (264)
Q Consensus 190 ~~~si~~vl~~-----Gki~vld~~~~~~~~Lr~~--~~~-p~vIfI~pps~e~l~~~ 239 (264)
...-+.+.+.+ .+-.|||+-|..+.+.... ... -.||++..|. +.|.++
T Consensus 93 v~~ll~~~l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d-~~l~~R 149 (261)
T PLN02459 93 IFSLLSKRLEAGEEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLRE-EVLVEK 149 (261)
T ss_pred HHHHHHHHHhcccccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCH-HHHHHH
Confidence 11223333332 2458999998655544421 112 4689999984 555543
No 446
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=96.57 E-value=0.0042 Score=56.91 Aligned_cols=127 Identities=18% Similarity=0.175 Sum_probs=66.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc---CCC----------Ccccccccc---CCCCCCCCCCCcceeecCHHHHHHHHH
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL---DPD----------KFTQVTPYT---TRPKKPGEEDGKEYHFVSHETMTSLIS 172 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~---~p~----------~f~~~v~~T---TR~~r~gE~~G~dY~fvs~~~f~~~i~ 172 (264)
.+-+|.|.|+.||||||++..|... .|+ .|+++-..- ....+.|--+ .|-.----.|-..+.
T Consensus 81 ~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPe--SyD~~~ll~fl~~vK 158 (283)
T COG1072 81 RPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPE--SYDVAALLRFLSDVK 158 (283)
T ss_pred CCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCc--cccHHHHHHHHHHHh
Confidence 3458899999999999999887654 222 222221110 1111222111 111111123444455
Q ss_pred cCCc-ceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHH---HHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166 173 AGKM-IEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSL---KVLRSPAFKPLVLFIAPPPFAALKES 239 (264)
Q Consensus 173 ~~~f-lE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~---~~Lr~~~~~p~vIfI~pps~e~l~~~ 239 (264)
+|.- +. .....|.-.........+..+-.|+|+.+..-.. ..+.-+.|.-+.|||++| .+.|+++
T Consensus 159 ~~~~~v~-aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~-~~~le~w 227 (283)
T COG1072 159 AGKPDVF-APVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDAD-EELLEER 227 (283)
T ss_pred cCCCccc-cccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCC-HHHHHHH
Confidence 4332 32 2233333333333445677777888888775222 233346777899999997 5566654
No 447
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.57 E-value=0.0034 Score=58.82 Aligned_cols=48 Identities=33% Similarity=0.394 Sum_probs=35.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHH
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTS 169 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~ 169 (264)
.+.++||+|-||||||||++.|-.... |..|+ ++|.|..-++..+..+
T Consensus 53 ~GeIfViMGLSGSGKSTLvR~~NrLie-------------pt~G~ilv~g~di~~~~~~~Lr~ 102 (386)
T COG4175 53 EGEIFVIMGLSGSGKSTLVRLLNRLIE-------------PTRGEILVDGKDIAKLSAAELRE 102 (386)
T ss_pred CCeEEEEEecCCCCHHHHHHHHhccCC-------------CCCceEEECCcchhcCCHHHHHH
Confidence 579999999999999999988866543 33343 5677777777766544
No 448
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=96.56 E-value=0.0022 Score=60.39 Aligned_cols=27 Identities=26% Similarity=0.565 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 66 ~Gei~gLlGpNGaGKSTLl~~L~Gl~~ 92 (340)
T PRK13536 66 SGECFGLLGPNGAGKSTIARMILGMTS 92 (340)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 569999999999999999999999754
No 449
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.56 E-value=0.0022 Score=58.32 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
+|.+++|+|++|+|||||++.|....+.
T Consensus 32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~ 59 (277)
T PRK13642 32 KGEWVSIIGQNGSGKSTTARLIDGLFEE 59 (277)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 5699999999999999999999988653
No 450
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.56 E-value=0.0022 Score=58.83 Aligned_cols=28 Identities=32% Similarity=0.391 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|+|||||++.|....+.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 59 (290)
T PRK13634 32 SGSYVAIIGHTGSGKSTLLQHLNGLLQP 59 (290)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 5699999999999999999999987643
No 451
>COG0218 Predicted GTPase [General function prediction only]
Probab=96.55 E-value=0.00015 Score=63.41 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
...=|+++|-|+||||||+|.|....
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k 48 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQK 48 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCc
Confidence 34679999999999999999999854
No 452
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0036 Score=62.00 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.|..|+|+|+||||||||++.|.+.++
T Consensus 363 ~GEkvAIlG~SGsGKSTllqLl~~~~~ 389 (573)
T COG4987 363 QGEKVAILGRSGSGKSTLLQLLAGAWD 389 (573)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhccC
Confidence 568999999999999999999998753
No 453
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=96.54 E-value=0.0022 Score=60.12 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+|+||+|||||++.|+...+.
T Consensus 46 ~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p 73 (331)
T PRK15079 46 EGETLGVVGESGCGKSTFARAIIGLVKA 73 (331)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Confidence 5699999999999999999999988653
No 454
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.54 E-value=0.002 Score=62.08 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||||+|||||++.|....+
T Consensus 53 ~Gei~~LvG~NGsGKSTLLr~I~Gl~~ 79 (400)
T PRK10070 53 EGEIFVIMGLSGSGKSTMVRLLNRLIE 79 (400)
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 568999999999999999999998864
No 455
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.53 E-value=0.0023 Score=57.66 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++.+++|+|++|+|||||++.|....+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (261)
T PRK14263 33 KNEITGFIGPSGCGKSTVLRSLNRMND 59 (261)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcccc
Confidence 468999999999999999999988753
No 456
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.53 E-value=0.0021 Score=58.75 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+.+++|+||+|+|||||++.|+..
T Consensus 64 ~Ge~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 64 SKYVTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5699999999999999999999985
No 457
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.53 E-value=0.0092 Score=51.22 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+.++++|-|||||||+++.+.+..
T Consensus 5 kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 5 KVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred eEEEEEcCCCCChHHHHHHHHHHH
Confidence 789999999999999999887664
No 458
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.53 E-value=0.0022 Score=61.50 Aligned_cols=28 Identities=39% Similarity=0.526 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||||+|||||++.|....+.
T Consensus 49 ~Gei~~I~G~nGsGKSTLlr~L~Gl~~p 76 (382)
T TIGR03415 49 EGEICVLMGLSGSGKSSLLRAVNGLNPV 76 (382)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 5699999999999999999999988653
No 459
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.53 E-value=0.0023 Score=55.74 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
+++++|+||+|+|||||++.|...
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 489999999999999999998753
No 460
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.52 E-value=0.0022 Score=55.01 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.++++|+|+||||||||++.|+....
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHh
Confidence 36899999999999999999997753
No 461
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.52 E-value=0.0024 Score=58.26 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=24.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.|.+++|+||+|+|||||++.|+...+
T Consensus 31 ~Ge~~~i~G~nGaGKSTLl~~i~Gl~~ 57 (283)
T PRK13636 31 KGEVTAILGGNGAGKSTLFQNLNGILK 57 (283)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 569999999999999999999998864
No 462
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=96.51 E-value=0.0025 Score=58.98 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~ 58 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLTH 58 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 468999999999999999999998754
No 463
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.51 E-value=0.0022 Score=51.28 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
..|+|+|++|+|||||++.|...
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999875
No 464
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.50 E-value=0.0025 Score=57.37 Aligned_cols=27 Identities=33% Similarity=0.407 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~iaG~~~ 61 (257)
T PRK14246 35 NNSIFGIMGPSGSGKSTLLKVLNRLIE 61 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998754
No 465
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.50 E-value=0.0023 Score=58.88 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~~ 53 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGYLP 53 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998854
No 466
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.49 E-value=0.0023 Score=60.82 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
..++++|+||+|+|||||++.|+...
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999999998764
No 467
>PRK13975 thymidylate kinase; Provisional
Probab=96.49 E-value=0.0024 Score=54.34 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+|+|.|+.||||||+++.|.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999998864
No 468
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.49 E-value=0.0026 Score=56.20 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+..++|+||+|+|||||++.|....+
T Consensus 24 ~Ge~~~i~G~nG~GKStLl~~l~G~~~ 50 (235)
T cd03299 24 RGDYFVILGPTGSGKSVLLETIAGFIK 50 (235)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 468999999999999999999998754
No 469
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.48 E-value=0.0023 Score=62.55 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 28 ~Ge~~~liG~nGsGKSTLl~~l~G~~~ 54 (490)
T PRK10938 28 AGDSWAFVGANGSGKSALARALAGELP 54 (490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 468999999999999999999998754
No 470
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.48 E-value=0.0022 Score=63.07 Aligned_cols=27 Identities=33% Similarity=0.477 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|||||||++.|+...+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 30 AGEIVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998865
No 471
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=96.48 E-value=0.0024 Score=63.22 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=24.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 34 ~Ge~~~iiG~nGsGKSTLl~~i~G~~~ 60 (529)
T PRK15134 34 AGETLALVGESGSGKSVTALSILRLLP 60 (529)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 568999999999999999999998865
No 472
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.48 E-value=0.0023 Score=62.84 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 29 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~ 55 (501)
T PRK10762 29 PGRVMALVGENGAGKSTMMKVLTGIYT 55 (501)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998864
No 473
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=96.47 E-value=0.0018 Score=55.21 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
..++|+|+||-.+|||||+|+|+..+.
T Consensus 7 F~K~VailG~ESsGKStLv~kLA~~fn 33 (187)
T COG3172 7 FVKTVAILGGESSGKSTLVNKLANIFN 33 (187)
T ss_pred hheeeeeecCcccChHHHHHHHHHHhC
Confidence 348999999999999999999998754
No 474
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.47 E-value=0.0023 Score=55.41 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+|+|+||+||||||+++.|+...+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 789999999999999999887754
No 475
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=96.47 E-value=0.00097 Score=60.06 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
++.++.||||+|+|||||.|.+...++.
T Consensus 29 ~Gei~~LIGPNGAGKTTlfNlitG~~~P 56 (250)
T COG0411 29 PGEIVGLIGPNGAGKTTLFNLITGFYKP 56 (250)
T ss_pred CCeEEEEECCCCCCceeeeeeecccccC
Confidence 5689999999999999999999987653
No 476
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.46 E-value=0.0027 Score=56.44 Aligned_cols=25 Identities=40% Similarity=0.620 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+.+++|+||+|+|||||++.|+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (250)
T PRK14266 28 KNSVTALIGPSGCGKSTFIRTLNRM 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4689999999999999999999875
No 477
>CHL00181 cbbX CbbX; Provisional
Probab=96.46 E-value=0.011 Score=54.43 Aligned_cols=25 Identities=12% Similarity=0.355 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+..++|.||+|+|||++++.|+..
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999775
No 478
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.45 E-value=0.0023 Score=50.46 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=19.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
..+.++|.||+|+|||++++.++...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 34789999999999999999999875
No 479
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.45 E-value=0.018 Score=52.31 Aligned_cols=104 Identities=12% Similarity=0.157 Sum_probs=53.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHH---HHHHHH-----HcCCcceeee
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHE---TMTSLI-----SAGKMIEFGE 181 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~---~f~~~i-----~~~~flE~~~ 181 (264)
..+|+|+||+|+||||+++.|+...++.-...+.. =.|.+....|.....+..+ .|...+ .+.+.+-.+|
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~~~~~iiti--Edp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgE 157 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITV--EDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGE 157 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEE--CCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEecc
Confidence 36899999999999999999887654310011110 0111111222211111110 122221 2456666666
Q ss_pred ecCceecCCHHHHHHHHHcCCeEEEEcCH----HHHHHHhc
Q psy14166 182 YKGHLYGTSSDSVLELVNSGRVAVLNPAY----QSLKVLRS 218 (264)
Q Consensus 182 ~~g~~YGt~~~si~~vl~~Gki~vld~~~----~~~~~Lr~ 218 (264)
..+. .....+.++...|+.++-.++. .++.+|..
T Consensus 158 iR~~---e~a~~~~~aa~tGh~v~tTlHa~~~~~ai~Rl~~ 195 (264)
T cd01129 158 IRDA---ETAEIAVQAALTGHLVLSTLHTNDAPGAITRLLD 195 (264)
T ss_pred CCCH---HHHHHHHHHHHcCCcEEEEeccCCHHHHHHHHHH
Confidence 5542 1223345667788887766664 45666654
No 480
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.44 E-value=0.0024 Score=55.58 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+++|+|+||+||||||.+-+|+..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 3689999999999999998888753
No 481
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.43 E-value=0.006 Score=56.17 Aligned_cols=110 Identities=22% Similarity=0.270 Sum_probs=64.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHHH--cCCc-ceeee--
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLIS--AGKM-IEFGE-- 181 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i~--~~~f-lE~~~-- 181 (264)
++.++.++||+|+||||++++|....- |..|. ++|.+- |-.++++.+.+. -|.. --+|.
T Consensus 49 ~G~ivgflGaNGAGKSTtLKmLTGll~-------------p~~G~v~V~G~~P-f~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 49 KGEIVGFLGANGAGKSTTLKMLTGLLL-------------PTSGKVRVNGKDP-FRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred CCcEEEEEcCCCCcchhhHHHHhCccc-------------cCCCeEEecCcCc-chhHHHHHHHHHHHhhhhheeeeech
Confidence 568999999999999999999987642 22332 445432 445666665541 1111 11222
Q ss_pred ------ecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhc-------------CCC-CcEEEEEeCCCh
Q psy14166 182 ------YKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRS-------------PAF-KPLVLFIAPPPF 233 (264)
Q Consensus 182 ------~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~-------------~~~-~p~vIfI~pps~ 233 (264)
.....|-.+.+..++-++ .-+-|||++...-..+|. +-+ .|.|+|++.|..
T Consensus 115 ~~ds~~v~~~Iy~Ipd~~F~~r~~-~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTv 185 (325)
T COG4586 115 ALDSLEVLKLIYEIPDDEFAERLD-FLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTV 185 (325)
T ss_pred hhhhHHHHHHHHhCCHHHHHHHHH-HHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence 223356666655554443 223467777543222221 112 689999999974
No 482
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=96.43 E-value=0.002 Score=58.14 Aligned_cols=58 Identities=16% Similarity=0.284 Sum_probs=35.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCC--CCCCCcceeecCHHHH
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKP--GEEDGKEYHFVSHETM 167 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~--gE~~G~dY~fvs~~~f 167 (264)
..-.|+|+|.+|||||||+|.|.+..-... .....+|+.... ++.+|..+.++|...|
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v-~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl 89 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAAT-SAFQSETLRVREVSGTVDGFKLNIIDTPGL 89 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCceEEEEEEEEEECCeEEEEEECCCc
Confidence 346899999999999999999998642111 112223332221 2345666677765444
No 483
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.43 E-value=0.0026 Score=62.90 Aligned_cols=27 Identities=26% Similarity=0.197 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 26 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~ 52 (530)
T PRK15064 26 GGNRYGLIGANGCGKSTFMKILGGDLE 52 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 568999999999999999999998764
No 484
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.43 E-value=0.0015 Score=52.35 Aligned_cols=35 Identities=31% Similarity=0.463 Sum_probs=24.6
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCC
Q psy14166 114 VLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPK 149 (264)
Q Consensus 114 vLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~ 149 (264)
+|+|.+|||||||.++|...... +....+.||+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~-~~~~~~~~t~~~ 35 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA-IVEDTPGVTRDR 35 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE-eecCCCCceeCc
Confidence 58999999999999999976421 223344556544
No 485
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.41 E-value=0.0089 Score=53.82 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
...++|.||+|+||||+++.++..
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999999875
No 486
>PRK03003 GTP-binding protein Der; Reviewed
Probab=96.41 E-value=0.0058 Score=59.86 Aligned_cols=56 Identities=29% Similarity=0.373 Sum_probs=39.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCHHH
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSHET 166 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~~~ 166 (264)
...|+|+|.+|||||||+++|+..... +....+.||+.+... +.+|..+.++|...
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~-~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG 268 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERS-VVDDVAGTTVDPVDSLIELGGKTWRFVDTAG 268 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcc-cccCCCCccCCcceEEEEECCEEEEEEECCC
Confidence 468999999999999999999976421 234567788876433 34566676665443
No 487
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=96.40 E-value=0.0028 Score=55.91 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHH
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLI 131 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~ 131 (264)
+.+++|+||+|+|||||++.|.
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~ 44 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIR 44 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 3699999999999999999987
No 488
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.39 E-value=0.0028 Score=51.05 Aligned_cols=22 Identities=41% Similarity=0.702 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhc
Q psy14166 112 PVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
-|+|+|++|||||||+++|...
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 489
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.39 E-value=0.0028 Score=56.46 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+||+|+|||||++.|....
T Consensus 26 pGev~ailGPNGAGKSTlLk~LsGel 51 (259)
T COG4559 26 PGEVLAILGPNGAGKSTLLKALSGEL 51 (259)
T ss_pred CCcEEEEECCCCccHHHHHHHhhCcc
Confidence 45999999999999999999999874
No 490
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=96.39 E-value=0.0096 Score=52.33 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+|+|-|..||||||+++.|.+..
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l 23 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKL 23 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999864
No 491
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=96.39 E-value=0.0031 Score=62.26 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 36 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~ 62 (510)
T PRK15439 36 AGEVHALLGGNGAGKSTLMKIIAGIVP 62 (510)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 568999999999999999999998864
No 492
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.38 E-value=0.0032 Score=58.13 Aligned_cols=26 Identities=38% Similarity=0.621 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+||+|+|||||++.|+...
T Consensus 70 ~Ge~~~IvG~nGsGKSTLl~~L~Gl~ 95 (305)
T PRK14264 70 EKSVTALIGPSGCGKSTFLRCLNRMN 95 (305)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 56899999999999999999999875
No 493
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=96.38 E-value=0.0027 Score=62.48 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 30 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 56 (510)
T PRK09700 30 PGEIHALLGENGAGKSTLMKVLSGIHE 56 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCcC
Confidence 468999999999999999999998764
No 494
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.37 E-value=0.031 Score=53.54 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=27.0
Q ss_pred chHhhhhcCCCCC-CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 96 TYEEVAKLYPMET-LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 96 ~Yeev~~~~~~~~-~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.|.-+..+...+. ...+++|.||+|+|||+|++.+...
T Consensus 121 a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~ 159 (405)
T TIGR00362 121 AHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNE 159 (405)
T ss_pred HHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4544444333333 3468999999999999999988764
No 495
>PRK04213 GTP-binding protein; Provisional
Probab=96.37 E-value=0.0043 Score=52.83 Aligned_cols=25 Identities=36% Similarity=0.610 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
...|+|+|++|||||||+++|....
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~ 33 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKK 33 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999998653
No 496
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.37 E-value=0.0034 Score=57.40 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+|++|+|||||++.|....+
T Consensus 29 ~Ge~~~IvG~nGsGKSTLl~~L~gl~~ 55 (275)
T cd03289 29 PGQRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 568999999999999999999998765
No 497
>PF05729 NACHT: NACHT domain
Probab=96.36 E-value=0.0032 Score=51.18 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
|+++|.|++|+||||++..++..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHH
Confidence 58999999999999999998865
No 498
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.36 E-value=0.0026 Score=52.89 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=18.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.++.++|.|++|+|||+|++.+....
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999999888763
No 499
>PRK02496 adk adenylate kinase; Provisional
Probab=96.36 E-value=0.0028 Score=53.74 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.|+|+||+||||||+++.|++.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999875
No 500
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.36 E-value=0.003 Score=54.74 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+++|+||+|+|||||++.|....
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999987654
Done!