Query psy14166
Match_columns 264
No_of_seqs 283 out of 1886
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 21:08:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tvt_A Disks large 1 tumor sup 100.0 3.3E-42 1.1E-46 314.8 13.3 145 92-241 84-229 (292)
2 1kjw_A Postsynaptic density pr 100.0 6.4E-39 2.2E-43 293.2 14.6 147 88-239 85-232 (295)
3 1ex7_A Guanylate kinase; subst 100.0 1.6E-38 5.4E-43 273.0 15.1 136 111-247 2-138 (186)
4 2xkx_A Disks large homolog 4; 100.0 2.2E-35 7.6E-40 297.9 16.9 147 88-239 511-658 (721)
5 3ney_A 55 kDa erythrocyte memb 100.0 1.7E-33 5.9E-38 243.8 13.4 126 109-234 18-143 (197)
6 3shw_A Tight junction protein 100.0 7.2E-31 2.5E-35 253.2 10.8 123 85-243 201-323 (468)
7 3tsz_A Tight junction protein 100.0 2.8E-30 9.6E-35 244.4 11.2 122 86-243 210-331 (391)
8 1kgd_A CASK, peripheral plasma 100.0 1.8E-28 6.2E-33 206.6 11.8 130 109-238 4-133 (180)
9 3a00_A Guanylate kinase, GMP k 100.0 4.6E-28 1.6E-32 204.9 13.3 130 110-239 1-131 (186)
10 3tau_A Guanylate kinase, GMP k 99.9 1.2E-27 4E-32 206.3 12.6 131 109-239 7-137 (208)
11 2qor_A Guanylate kinase; phosp 99.9 2.5E-26 8.5E-31 196.7 16.2 133 108-240 10-144 (204)
12 3kfv_A Tight junction protein 99.9 9.2E-26 3.2E-30 207.1 10.3 111 92-242 129-239 (308)
13 1lvg_A Guanylate kinase, GMP k 99.9 1.5E-24 5.1E-29 185.8 15.5 132 109-240 3-134 (198)
14 1s96_A Guanylate kinase, GMP k 99.9 6.2E-24 2.1E-28 185.9 15.5 132 108-239 14-146 (219)
15 3tr0_A Guanylate kinase, GMP k 99.9 1E-20 3.5E-25 160.0 16.2 131 109-240 6-136 (205)
16 3lnc_A Guanylate kinase, GMP k 99.8 1.8E-20 6.3E-25 162.8 10.7 130 109-239 26-157 (231)
17 4dey_A Voltage-dependent L-typ 99.8 2.6E-21 8.9E-26 178.9 3.5 133 92-240 131-269 (337)
18 1z6g_A Guanylate kinase; struc 99.8 5.3E-19 1.8E-23 153.4 16.5 131 109-239 22-154 (218)
19 2j41_A Guanylate kinase; GMP, 99.8 1E-18 3.4E-23 147.7 14.0 131 109-239 5-135 (207)
20 1znw_A Guanylate kinase, GMP k 99.6 3.9E-15 1.3E-19 127.3 14.9 130 109-239 19-150 (207)
21 3a8t_A Adenylate isopentenyltr 99.2 6.7E-12 2.3E-16 116.4 5.4 120 109-239 39-190 (339)
22 3exa_A TRNA delta(2)-isopenten 99.2 1.3E-12 4.3E-17 120.4 0.1 98 110-217 3-109 (322)
23 3eph_A TRNA isopentenyltransfe 99.2 2E-12 6.7E-17 122.6 0.3 89 111-209 3-99 (409)
24 3foz_A TRNA delta(2)-isopenten 99.2 1.7E-12 5.7E-17 119.3 -1.5 98 110-217 10-116 (316)
25 2ze6_A Isopentenyl transferase 99.0 1.1E-10 3.6E-15 103.4 4.6 117 111-238 2-133 (253)
26 1gvn_B Zeta; postsegregational 98.9 6.3E-10 2.2E-14 100.3 5.7 109 109-234 32-151 (287)
27 3crm_A TRNA delta(2)-isopenten 98.8 2.9E-10 9.8E-15 104.9 -2.1 89 111-209 6-102 (323)
28 1qhx_A CPT, protein (chloramph 98.7 2.6E-08 8.8E-13 81.7 8.4 115 110-239 3-129 (178)
29 3d3q_A TRNA delta(2)-isopenten 98.7 1.2E-08 4E-13 94.7 5.1 105 111-229 8-121 (340)
30 2rhm_A Putative kinase; P-loop 98.5 9.3E-08 3.2E-12 79.1 5.9 107 109-239 4-121 (193)
31 4eaq_A DTMP kinase, thymidylat 98.5 4.6E-08 1.6E-12 85.2 4.0 117 109-238 25-164 (229)
32 1kht_A Adenylate kinase; phosp 98.5 5.5E-07 1.9E-11 74.0 10.3 25 110-134 3-27 (192)
33 1ly1_A Polynucleotide kinase; 98.5 1.1E-07 3.6E-12 77.7 5.4 103 111-238 3-121 (181)
34 3v9p_A DTMP kinase, thymidylat 98.5 1.9E-08 6.4E-13 88.2 0.7 131 96-237 11-166 (227)
35 3zvl_A Bifunctional polynucleo 98.5 3.9E-07 1.3E-11 86.0 9.4 90 109-239 257-353 (416)
36 2v54_A DTMP kinase, thymidylat 98.5 1E-07 3.6E-12 79.6 4.3 26 109-134 3-28 (204)
37 2c95_A Adenylate kinase 1; tra 98.4 5.7E-07 2E-11 74.4 8.2 117 109-239 8-129 (196)
38 3t61_A Gluconokinase; PSI-biol 98.4 6E-07 2E-11 75.4 7.9 106 110-239 18-127 (202)
39 3trf_A Shikimate kinase, SK; a 98.4 4.1E-07 1.4E-11 75.0 6.7 25 110-134 5-29 (185)
40 3tlx_A Adenylate kinase 2; str 98.4 2.3E-07 7.8E-12 81.2 4.6 114 109-239 28-152 (243)
41 1knq_A Gluconate kinase; ALFA/ 98.4 1.2E-06 4E-11 71.7 8.6 26 109-134 7-32 (175)
42 4eun_A Thermoresistant glucoki 98.4 1.2E-06 4E-11 73.8 8.7 111 109-239 28-141 (200)
43 3lv8_A DTMP kinase, thymidylat 98.3 4.4E-07 1.5E-11 79.9 5.2 119 109-238 26-170 (236)
44 1nks_A Adenylate kinase; therm 98.3 2E-07 7E-12 76.6 2.8 25 111-135 2-26 (194)
45 2p5t_B PEZT; postsegregational 98.3 6E-07 2E-11 78.8 5.4 112 109-238 31-152 (253)
46 2z0h_A DTMP kinase, thymidylat 98.3 1.9E-07 6.6E-12 77.4 2.2 114 112-238 2-137 (197)
47 4edh_A DTMP kinase, thymidylat 98.3 4.5E-07 1.5E-11 78.4 4.5 118 109-238 5-147 (213)
48 3vaa_A Shikimate kinase, SK; s 98.3 1.1E-06 3.7E-11 74.0 6.4 25 110-134 25-49 (199)
49 2vli_A Antibiotic resistance p 98.3 4.9E-06 1.7E-10 68.1 10.0 27 109-135 4-30 (183)
50 1nn5_A Similar to deoxythymidy 98.2 3E-07 1E-11 77.3 2.2 26 109-134 8-33 (215)
51 2bdt_A BH3686; alpha-beta prot 98.2 1.3E-06 4.3E-11 72.5 5.9 23 111-133 3-25 (189)
52 1ukz_A Uridylate kinase; trans 98.2 6.9E-06 2.4E-10 68.7 10.3 118 109-238 14-136 (203)
53 3dl0_A Adenylate kinase; phosp 98.2 1.4E-06 4.8E-11 73.8 5.9 110 112-238 2-122 (216)
54 1zak_A Adenylate kinase; ATP:A 98.2 8.6E-08 3E-12 81.9 -1.9 26 110-135 5-30 (222)
55 2plr_A DTMP kinase, probable t 98.2 1.6E-06 5.4E-11 72.4 5.9 26 110-135 4-29 (213)
56 3fb4_A Adenylate kinase; psych 98.2 1.5E-06 5.2E-11 73.4 5.4 110 112-238 2-122 (216)
57 3lw7_A Adenylate kinase relate 98.2 4.1E-06 1.4E-10 67.1 7.4 23 111-134 2-24 (179)
58 3kb2_A SPBC2 prophage-derived 98.1 4E-06 1.4E-10 67.6 7.0 24 111-134 2-25 (173)
59 1ltq_A Polynucleotide kinase; 98.1 2.6E-06 8.9E-11 75.7 6.3 106 111-239 3-122 (301)
60 2bwj_A Adenylate kinase 5; pho 98.1 7.9E-06 2.7E-10 67.6 8.3 24 111-134 13-36 (199)
61 3iij_A Coilin-interacting nucl 98.1 5.4E-06 1.8E-10 68.1 7.0 26 109-134 10-35 (180)
62 2yvu_A Probable adenylyl-sulfa 98.1 6.8E-06 2.3E-10 68.0 7.3 26 109-134 12-37 (186)
63 1m7g_A Adenylylsulfate kinase; 98.1 2.3E-06 7.7E-11 72.7 4.4 26 109-134 24-49 (211)
64 2cdn_A Adenylate kinase; phosp 98.1 2.5E-05 8.5E-10 65.3 10.5 26 109-134 19-44 (201)
65 2xb4_A Adenylate kinase; ATP-b 98.1 9.8E-06 3.4E-10 69.5 8.1 106 112-238 2-121 (223)
66 2gks_A Bifunctional SAT/APS ki 98.0 1E-05 3.5E-10 79.2 8.3 110 109-239 371-486 (546)
67 3nwj_A ATSK2; P loop, shikimat 98.0 1.2E-05 4E-10 71.2 7.7 25 110-134 48-72 (250)
68 2wwf_A Thymidilate kinase, put 98.0 2.9E-06 9.8E-11 71.2 3.3 26 109-134 9-34 (212)
69 4tmk_A Protein (thymidylate ki 98.0 1.9E-05 6.5E-10 68.2 8.5 40 110-150 3-42 (213)
70 3uie_A Adenylyl-sulfate kinase 98.0 1.2E-05 4E-10 67.6 6.8 26 109-134 24-49 (200)
71 1y63_A LMAJ004144AAA protein; 97.9 2.2E-05 7.5E-10 65.2 7.9 25 109-133 9-33 (184)
72 1qf9_A UMP/CMP kinase, protein 97.9 4.8E-06 1.6E-10 68.3 3.8 24 111-134 7-30 (194)
73 2pt5_A Shikimate kinase, SK; a 97.9 2.9E-05 9.8E-10 62.7 8.3 23 112-134 2-24 (168)
74 3a4m_A L-seryl-tRNA(SEC) kinas 97.9 7.3E-06 2.5E-10 72.1 4.7 24 110-133 4-27 (260)
75 3cm0_A Adenylate kinase; ATP-b 97.9 1.9E-05 6.5E-10 64.8 6.3 26 109-134 3-28 (186)
76 1rz3_A Hypothetical protein rb 97.9 2.6E-06 9E-11 71.9 1.0 125 109-237 21-159 (201)
77 1a7j_A Phosphoribulokinase; tr 97.9 5.6E-08 1.9E-12 87.8 -9.9 24 110-133 5-28 (290)
78 1tev_A UMP-CMP kinase; ploop, 97.9 2.1E-05 7.2E-10 64.5 6.5 25 110-134 3-27 (196)
79 2iyv_A Shikimate kinase, SK; t 97.8 3E-05 1E-09 63.7 6.8 24 111-134 3-26 (184)
80 3umf_A Adenylate kinase; rossm 97.8 5.3E-05 1.8E-09 65.7 8.1 26 109-134 28-53 (217)
81 2pbr_A DTMP kinase, thymidylat 97.8 3E-05 1E-09 63.6 6.1 23 112-134 2-24 (195)
82 1aky_A Adenylate kinase; ATP:A 97.8 6.1E-05 2.1E-09 63.9 8.1 25 110-134 4-28 (220)
83 1gtv_A TMK, thymidylate kinase 97.8 3.3E-08 1.1E-12 83.3 -12.4 25 111-135 1-25 (214)
84 3be4_A Adenylate kinase; malar 97.8 4.8E-05 1.7E-09 64.7 7.2 25 110-134 5-29 (217)
85 1e6c_A Shikimate kinase; phosp 97.8 3.3E-05 1.1E-09 62.5 5.8 24 111-134 3-26 (173)
86 2pez_A Bifunctional 3'-phospho 97.7 8.1E-05 2.8E-09 61.0 7.3 26 109-134 4-29 (179)
87 1x6v_B Bifunctional 3'-phospho 97.7 5.9E-05 2E-09 75.1 7.3 26 109-134 51-76 (630)
88 2axn_A 6-phosphofructo-2-kinas 97.7 0.0001 3.5E-09 71.6 8.7 114 109-240 34-165 (520)
89 4gp7_A Metallophosphoesterase; 97.7 7.9E-05 2.7E-09 61.2 6.6 23 109-131 8-30 (171)
90 3sr0_A Adenylate kinase; phosp 97.6 0.0001 3.6E-09 63.1 7.1 107 112-238 2-119 (206)
91 1m8p_A Sulfate adenylyltransfe 97.6 6.9E-05 2.4E-09 73.7 6.4 112 106-239 392-512 (573)
92 2f6r_A COA synthase, bifunctio 97.6 4.5E-05 1.5E-09 68.1 4.4 25 109-133 74-98 (281)
93 1zd8_A GTP:AMP phosphotransfer 97.6 0.00014 4.7E-09 62.1 7.1 26 110-135 7-32 (227)
94 1e4v_A Adenylate kinase; trans 97.6 7.2E-05 2.5E-09 63.3 5.3 23 112-134 2-24 (214)
95 1zp6_A Hypothetical protein AT 97.5 4E-05 1.4E-09 63.1 3.3 25 109-133 8-32 (191)
96 1np6_A Molybdopterin-guanine d 97.5 2.2E-05 7.6E-10 65.7 0.8 94 111-208 7-108 (174)
97 4hlc_A DTMP kinase, thymidylat 97.5 0.00035 1.2E-08 59.6 8.3 114 111-238 3-140 (205)
98 1kag_A SKI, shikimate kinase I 97.5 7E-05 2.4E-09 60.6 3.6 26 110-135 4-29 (173)
99 4g1u_C Hemin import ATP-bindin 97.5 9.6E-05 3.3E-09 65.7 4.8 27 109-135 36-62 (266)
100 1q3t_A Cytidylate kinase; nucl 97.4 0.00027 9.2E-09 60.8 7.4 25 109-133 15-39 (236)
101 3c8u_A Fructokinase; YP_612366 97.4 9.2E-05 3.1E-09 62.5 3.9 28 108-135 20-47 (208)
102 3tif_A Uncharacterized ABC tra 97.4 8.9E-05 3.1E-09 64.6 3.9 28 109-136 30-57 (235)
103 3fdi_A Uncharacterized protein 97.4 0.0011 3.7E-08 56.2 10.4 25 111-135 7-31 (201)
104 3ld9_A DTMP kinase, thymidylat 97.4 2E-05 7E-10 68.7 -0.5 42 109-150 20-61 (223)
105 4f4c_A Multidrug resistance pr 97.4 5.7E-05 2E-09 80.8 2.5 78 109-199 1104-1192(1321)
106 2yv5_A YJEQ protein; hydrolase 97.4 9.4E-05 3.2E-09 66.7 3.5 25 110-135 165-189 (302)
107 3tmk_A Thymidylate kinase; pho 97.3 8.9E-05 3E-09 64.2 3.0 88 109-210 4-96 (216)
108 2pcj_A ABC transporter, lipopr 97.3 0.00011 3.9E-09 63.4 3.6 28 109-136 29-56 (224)
109 2h92_A Cytidylate kinase; ross 97.3 0.00077 2.6E-08 56.7 8.5 24 111-134 4-27 (219)
110 3asz_A Uridine kinase; cytidin 97.3 0.00013 4.5E-09 61.1 3.4 26 109-134 5-30 (211)
111 3nh6_A ATP-binding cassette SU 97.3 9.7E-05 3.3E-09 67.2 2.7 28 109-136 79-106 (306)
112 1b0u_A Histidine permease; ABC 97.3 0.00015 5.1E-09 64.2 3.9 28 109-136 31-58 (262)
113 4f4c_A Multidrug resistance pr 97.3 0.00012 3.9E-09 78.5 3.6 78 109-199 443-529 (1321)
114 3hdt_A Putative kinase; struct 97.3 0.0017 5.7E-08 56.3 10.4 25 110-134 14-38 (223)
115 1mky_A Probable GTP-binding pr 97.3 0.00013 4.4E-09 69.0 3.5 56 111-167 181-238 (439)
116 3gfo_A Cobalt import ATP-bindi 97.3 0.00016 5.5E-09 64.7 3.9 28 109-136 33-60 (275)
117 1htw_A HI0065; nucleotide-bind 97.3 0.00018 6.2E-09 59.1 3.9 27 109-135 32-58 (158)
118 1g6h_A High-affinity branched- 97.3 0.00017 5.8E-09 63.6 3.9 28 109-136 32-59 (257)
119 2ff7_A Alpha-hemolysin translo 97.2 0.00017 6E-09 63.3 3.9 28 109-136 34-61 (247)
120 1ji0_A ABC transporter; ATP bi 97.2 0.00018 6E-09 62.8 3.9 28 109-136 31-58 (240)
121 2pze_A Cystic fibrosis transme 97.2 0.00018 6.2E-09 62.3 3.9 28 109-136 33-60 (229)
122 1u0l_A Probable GTPase ENGC; p 97.2 0.00023 8E-09 64.0 4.7 26 110-135 169-194 (301)
123 3tui_C Methionine import ATP-b 97.2 0.00022 7.5E-09 66.6 4.6 28 109-136 53-80 (366)
124 2olj_A Amino acid ABC transpor 97.2 0.00018 6.3E-09 63.9 3.9 28 109-136 49-76 (263)
125 2cbz_A Multidrug resistance-as 97.2 0.00015 5.1E-09 63.2 3.2 27 109-135 30-56 (237)
126 3cr8_A Sulfate adenylyltranfer 97.2 0.00022 7.4E-09 69.9 4.6 26 109-134 368-393 (552)
127 1sgw_A Putative ABC transporte 97.2 0.00018 6.1E-09 62.0 3.6 28 109-136 34-61 (214)
128 1mv5_A LMRA, multidrug resista 97.2 0.00018 6.3E-09 62.8 3.6 28 109-136 27-54 (243)
129 2ixe_A Antigen peptide transpo 97.2 0.0002 6.9E-09 63.7 3.9 27 109-135 44-70 (271)
130 2qi9_C Vitamin B12 import ATP- 97.2 0.00019 6.5E-09 63.2 3.6 29 109-137 25-53 (249)
131 1vpl_A ABC transporter, ATP-bi 97.2 0.00022 7.5E-09 63.1 3.9 28 109-136 40-67 (256)
132 2ghi_A Transport protein; mult 97.2 0.00021 7.2E-09 63.2 3.7 27 109-135 45-71 (260)
133 1bif_A 6-phosphofructo-2-kinas 97.2 0.0011 3.7E-08 63.2 8.9 25 110-134 39-63 (469)
134 2ihy_A ABC transporter, ATP-bi 97.2 0.00022 7.7E-09 63.8 3.9 28 109-136 46-73 (279)
135 2yz2_A Putative ABC transporte 97.1 0.00025 8.6E-09 62.8 3.9 28 109-136 32-59 (266)
136 2nq2_C Hypothetical ABC transp 97.1 0.00026 8.7E-09 62.5 3.8 28 109-136 30-57 (253)
137 2qt1_A Nicotinamide riboside k 97.1 0.00034 1.1E-08 58.6 4.2 27 109-135 20-46 (207)
138 2ehv_A Hypothetical protein PH 97.1 0.00028 9.5E-09 60.1 3.7 23 109-131 29-51 (251)
139 2bbw_A Adenylate kinase 4, AK4 97.1 0.00028 9.5E-09 61.0 3.8 24 110-133 27-50 (246)
140 2d2e_A SUFC protein; ABC-ATPas 97.1 0.00028 9.7E-09 61.9 3.8 25 109-133 28-52 (250)
141 1ye8_A Protein THEP1, hypothet 97.1 0.00028 9.6E-09 58.8 3.6 24 112-135 2-25 (178)
142 3fvq_A Fe(3+) IONS import ATP- 97.1 0.0003 1E-08 65.4 4.0 28 109-136 29-56 (359)
143 1t9h_A YLOQ, probable GTPase E 97.1 0.0001 3.5E-09 67.2 0.7 27 109-135 172-198 (307)
144 2onk_A Molybdate/tungstate ABC 97.1 0.00035 1.2E-08 61.2 4.0 26 111-136 25-50 (240)
145 1cke_A CK, MSSA, protein (cyti 97.1 0.00031 1.1E-08 59.3 3.6 24 111-134 6-29 (227)
146 2zu0_C Probable ATP-dependent 97.1 0.00032 1.1E-08 62.3 3.8 25 109-133 45-69 (267)
147 4a74_A DNA repair and recombin 97.1 0.00031 1E-08 59.0 3.3 25 109-133 24-48 (231)
148 2gza_A Type IV secretion syste 97.0 0.00054 1.8E-08 63.3 5.2 28 109-136 174-201 (361)
149 1z47_A CYSA, putative ABC-tran 97.0 0.00036 1.2E-08 64.8 4.0 28 109-136 40-67 (355)
150 3rlf_A Maltose/maltodextrin im 97.0 0.00036 1.2E-08 65.4 4.0 28 109-136 28-55 (381)
151 2yyz_A Sugar ABC transporter, 97.0 0.00038 1.3E-08 64.7 4.0 28 109-136 28-55 (359)
152 3sop_A Neuronal-specific septi 97.0 0.00036 1.2E-08 62.0 3.8 24 112-135 4-27 (270)
153 4e22_A Cytidylate kinase; P-lo 97.0 0.00039 1.3E-08 60.7 3.9 26 109-134 26-51 (252)
154 2rcn_A Probable GTPase ENGC; Y 97.0 0.00045 1.5E-08 64.3 4.5 27 109-135 214-240 (358)
155 3aez_A Pantothenate kinase; tr 97.0 0.00035 1.2E-08 63.6 3.6 27 108-134 88-114 (312)
156 2it1_A 362AA long hypothetical 97.0 0.0004 1.4E-08 64.7 4.0 28 109-136 28-55 (362)
157 2jeo_A Uridine-cytidine kinase 97.0 0.00037 1.3E-08 60.3 3.6 26 109-134 24-49 (245)
158 2bbs_A Cystic fibrosis transme 97.0 0.00036 1.2E-08 62.9 3.5 27 109-135 63-89 (290)
159 3gmt_A Adenylate kinase; ssgci 97.0 0.002 6.9E-08 56.3 8.2 24 111-134 9-32 (230)
160 1g29_1 MALK, maltose transport 97.0 0.00041 1.4E-08 64.7 4.0 28 109-136 28-55 (372)
161 1v43_A Sugar-binding transport 97.0 0.00041 1.4E-08 64.8 4.0 28 109-136 36-63 (372)
162 2v9p_A Replication protein E1; 97.0 0.00044 1.5E-08 62.9 3.9 26 109-134 125-150 (305)
163 2eyu_A Twitching motility prot 97.0 0.0004 1.4E-08 61.4 3.6 26 109-134 24-49 (261)
164 3b85_A Phosphate starvation-in 97.0 0.00031 1.1E-08 60.2 2.7 25 109-133 21-45 (208)
165 3ec2_A DNA replication protein 97.0 0.00039 1.3E-08 56.9 3.1 26 109-134 37-62 (180)
166 2wji_A Ferrous iron transport 97.0 0.00037 1.2E-08 56.0 2.8 23 111-133 4-26 (165)
167 3b5x_A Lipid A export ATP-bind 96.9 0.00047 1.6E-08 67.5 4.0 27 109-135 368-394 (582)
168 3ozx_A RNAse L inhibitor; ATP 96.9 0.00054 1.8E-08 66.9 4.3 31 105-135 20-50 (538)
169 1via_A Shikimate kinase; struc 96.9 0.00046 1.6E-08 56.2 3.2 24 111-134 5-28 (175)
170 3d31_A Sulfate/molybdate ABC t 96.9 0.00038 1.3E-08 64.4 3.0 28 109-136 25-52 (348)
171 2jaq_A Deoxyguanosine kinase; 96.9 0.00056 1.9E-08 56.3 3.6 24 112-135 2-25 (205)
172 3gd7_A Fusion complex of cysti 96.9 0.00047 1.6E-08 64.7 3.4 27 109-135 46-72 (390)
173 2gj8_A MNME, tRNA modification 96.9 0.00084 2.9E-08 54.4 4.4 38 110-148 4-41 (172)
174 1oxx_K GLCV, glucose, ABC tran 96.9 0.00034 1.2E-08 64.8 2.3 28 109-136 30-57 (353)
175 1rj9_A FTSY, signal recognitio 96.9 0.00071 2.4E-08 61.3 4.4 26 109-134 101-126 (304)
176 2pjz_A Hypothetical protein ST 96.9 0.00059 2E-08 60.6 3.7 26 110-135 30-55 (263)
177 2i3b_A HCR-ntpase, human cance 96.9 0.00058 2E-08 57.6 3.5 25 110-134 1-25 (189)
178 1jjv_A Dephospho-COA kinase; P 96.9 0.00059 2E-08 56.9 3.4 22 111-132 3-24 (206)
179 1xjc_A MOBB protein homolog; s 96.8 0.00036 1.2E-08 58.3 2.0 24 111-134 5-28 (169)
180 1uf9_A TT1252 protein; P-loop, 96.8 0.00066 2.3E-08 56.0 3.6 25 109-133 7-31 (203)
181 1sq5_A Pantothenate kinase; P- 96.8 0.00064 2.2E-08 61.2 3.7 27 108-134 78-104 (308)
182 3qf4_B Uncharacterized ABC tra 96.8 0.00038 1.3E-08 68.5 2.4 27 109-135 380-406 (598)
183 2if2_A Dephospho-COA kinase; a 96.8 0.00065 2.2E-08 56.5 3.4 22 111-132 2-23 (204)
184 3b60_A Lipid A export ATP-bind 96.8 0.00064 2.2E-08 66.6 3.7 27 109-135 368-394 (582)
185 3qf4_A ABC transporter, ATP-bi 96.8 0.00046 1.6E-08 67.8 2.6 27 109-135 368-394 (587)
186 4dhe_A Probable GTP-binding pr 96.8 0.00042 1.4E-08 58.0 1.9 25 110-134 29-53 (223)
187 2vp4_A Deoxynucleoside kinase; 96.8 0.00055 1.9E-08 58.7 2.6 25 109-133 19-43 (230)
188 2kjq_A DNAA-related protein; s 96.8 0.00059 2E-08 55.1 2.6 26 109-134 35-60 (149)
189 3b1v_A Ferrous iron uptake tra 96.7 0.00075 2.5E-08 60.0 3.4 40 111-152 4-43 (272)
190 4a82_A Cystic fibrosis transme 96.7 0.0005 1.7E-08 67.3 2.4 27 109-135 366-392 (578)
191 1pui_A ENGB, probable GTP-bind 96.7 0.00037 1.3E-08 57.8 1.2 26 109-134 25-50 (210)
192 1odf_A YGR205W, hypothetical 3 96.7 0.001 3.5E-08 59.8 4.1 28 108-135 29-56 (290)
193 2lkc_A Translation initiation 96.7 0.0018 6.1E-08 51.7 4.9 26 109-134 7-32 (178)
194 3b9q_A Chloroplast SRP recepto 96.7 0.00092 3.2E-08 60.4 3.5 26 109-134 99-124 (302)
195 2yl4_A ATP-binding cassette SU 96.7 0.00063 2.2E-08 66.8 2.6 28 109-136 369-396 (595)
196 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.0011 3.9E-08 55.3 3.9 25 109-133 22-46 (235)
197 1lw7_A Transcriptional regulat 96.7 0.00081 2.8E-08 61.8 3.1 27 110-136 170-196 (365)
198 1vht_A Dephospho-COA kinase; s 96.7 0.0011 3.6E-08 55.9 3.6 23 110-132 4-26 (218)
199 3g5u_A MCG1178, multidrug resi 96.7 0.00065 2.2E-08 72.5 2.8 64 109-185 415-483 (1284)
200 1oix_A RAS-related protein RAB 96.7 0.0011 3.8E-08 54.7 3.6 24 111-134 30-53 (191)
201 3j16_B RLI1P; ribosome recycli 96.6 0.0014 4.7E-08 65.0 4.7 29 107-135 100-128 (608)
202 2f9l_A RAB11B, member RAS onco 96.6 0.001 3.5E-08 54.9 3.3 24 111-134 6-29 (199)
203 2hjg_A GTP-binding protein ENG 96.6 0.0034 1.2E-07 59.1 7.1 57 110-167 175-233 (436)
204 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.00097 3.3E-08 60.9 3.2 28 109-136 170-197 (330)
205 2dyk_A GTP-binding protein; GT 96.6 0.0015 5.1E-08 51.1 3.9 24 111-134 2-25 (161)
206 3e70_C DPA, signal recognition 96.6 0.0011 3.7E-08 60.8 3.5 26 109-134 128-153 (328)
207 3lxw_A GTPase IMAP family memb 96.6 0.00094 3.2E-08 58.1 2.9 53 111-163 22-76 (247)
208 2f1r_A Molybdopterin-guanine d 96.6 0.00066 2.3E-08 56.4 1.7 25 111-135 3-27 (171)
209 1jbk_A CLPB protein; beta barr 96.6 0.0015 5.1E-08 52.2 3.7 25 110-134 43-67 (195)
210 1svi_A GTP-binding protein YSX 96.6 0.0017 5.8E-08 52.8 4.1 24 110-133 23-46 (195)
211 2zej_A Dardarin, leucine-rich 96.6 0.001 3.5E-08 54.2 2.7 22 112-133 4-25 (184)
212 3lxx_A GTPase IMAP family memb 96.6 0.0017 5.9E-08 55.5 4.3 26 110-135 29-54 (239)
213 1ak2_A Adenylate kinase isoenz 96.5 0.0016 5.4E-08 55.8 4.0 26 109-134 15-40 (233)
214 4dcu_A GTP-binding protein ENG 96.5 0.003 1E-07 59.8 6.2 56 110-166 23-80 (456)
215 3tqc_A Pantothenate kinase; bi 96.5 0.0014 4.7E-08 60.0 3.6 26 109-134 91-116 (321)
216 1uj2_A Uridine-cytidine kinase 96.5 0.0016 5.5E-08 56.5 3.8 26 110-135 22-47 (252)
217 2qtf_A Protein HFLX, GTP-bindi 96.5 0.0011 3.7E-08 61.5 2.9 40 111-152 180-219 (364)
218 1yqt_A RNAse L inhibitor; ATP- 96.5 0.0016 5.6E-08 63.4 4.2 27 109-135 46-72 (538)
219 1zuh_A Shikimate kinase; alpha 96.5 0.0017 5.8E-08 52.3 3.6 24 111-134 8-31 (168)
220 3t1o_A Gliding protein MGLA; G 96.5 0.0027 9.1E-08 51.3 4.8 26 111-136 15-40 (198)
221 2cvh_A DNA repair and recombin 96.5 0.0019 6.5E-08 53.7 3.9 24 109-132 19-42 (220)
222 3iev_A GTP-binding protein ERA 96.5 0.0019 6.3E-08 58.2 4.0 41 109-150 9-49 (308)
223 1n0w_A DNA repair protein RAD5 96.5 0.0019 6.5E-08 54.6 3.9 25 109-133 23-47 (243)
224 2wjg_A FEOB, ferrous iron tran 96.5 0.0016 5.5E-08 52.6 3.2 23 111-133 8-30 (188)
225 3pqc_A Probable GTP-binding pr 96.4 0.0036 1.2E-07 50.5 5.3 24 111-134 24-47 (195)
226 3bos_A Putative DNA replicatio 96.4 0.0019 6.5E-08 54.0 3.8 25 109-133 51-75 (242)
227 2npi_A Protein CLP1; CLP1-PCF1 96.4 0.0016 5.5E-08 62.3 3.6 26 109-134 137-162 (460)
228 2og2_A Putative signal recogni 96.4 0.0016 5.6E-08 60.4 3.5 26 109-134 156-181 (359)
229 2qag_B Septin-6, protein NEDD5 96.4 0.0014 4.7E-08 62.4 3.0 26 109-134 39-66 (427)
230 3r20_A Cytidylate kinase; stru 96.4 0.0019 6.5E-08 56.5 3.7 25 110-134 9-33 (233)
231 2qmh_A HPR kinase/phosphorylas 96.4 0.0017 5.9E-08 55.9 3.3 27 109-135 33-59 (205)
232 2hjg_A GTP-binding protein ENG 96.4 0.0038 1.3E-07 58.7 6.0 56 111-167 4-61 (436)
233 1nij_A Hypothetical protein YJ 96.4 0.0015 5.1E-08 59.1 3.0 24 111-134 5-28 (318)
234 3ake_A Cytidylate kinase; CMP 96.4 0.0022 7.4E-08 53.0 3.8 24 111-134 3-26 (208)
235 2ewv_A Twitching motility prot 96.4 0.0017 5.9E-08 60.2 3.5 27 109-135 135-161 (372)
236 1cr0_A DNA primase/helicase; R 96.4 0.0019 6.6E-08 57.0 3.7 26 109-134 34-59 (296)
237 1ega_A Protein (GTP-binding pr 96.4 0.001 3.5E-08 59.7 1.8 38 111-149 9-46 (301)
238 2qu8_A Putative nucleolar GTP- 96.4 0.0022 7.6E-08 54.2 3.8 34 100-133 19-52 (228)
239 2qm8_A GTPase/ATPase; G protei 96.4 0.0019 6.3E-08 59.2 3.5 25 109-133 54-78 (337)
240 1ni3_A YCHF GTPase, YCHF GTP-b 96.4 0.0024 8.2E-08 60.0 4.2 43 109-152 19-61 (392)
241 2p65_A Hypothetical protein PF 96.3 0.0018 6.1E-08 51.9 2.9 25 110-134 43-67 (187)
242 3kta_A Chromosome segregation 96.3 0.002 6.8E-08 52.5 3.2 24 111-134 27-50 (182)
243 1kao_A RAP2A; GTP-binding prot 96.3 0.0021 7.4E-08 50.2 3.3 23 112-134 5-27 (167)
244 3jvv_A Twitching mobility prot 96.3 0.002 6.7E-08 59.7 3.5 25 110-134 123-147 (356)
245 2www_A Methylmalonic aciduria 96.3 0.0029 9.8E-08 58.1 4.5 24 110-133 74-97 (349)
246 1z2a_A RAS-related protein RAB 96.3 0.0023 7.7E-08 50.3 3.3 24 111-134 6-29 (168)
247 3ozx_A RNAse L inhibitor; ATP 96.3 0.0022 7.6E-08 62.5 3.9 28 109-136 293-320 (538)
248 2nzj_A GTP-binding protein REM 96.3 0.0021 7.1E-08 51.0 3.1 24 111-134 5-28 (175)
249 4a9a_A Ribosome-interacting GT 96.3 0.0012 3.9E-08 61.9 1.7 53 111-165 73-127 (376)
250 2fn4_A P23, RAS-related protei 96.3 0.0024 8.2E-08 50.8 3.3 24 110-133 9-32 (181)
251 1tq4_A IIGP1, interferon-induc 96.3 0.0022 7.7E-08 60.6 3.6 25 111-135 70-94 (413)
252 2yhs_A FTSY, cell division pro 96.3 0.0021 7.2E-08 62.3 3.5 26 109-134 292-317 (503)
253 3bk7_A ABC transporter ATP-bin 96.3 0.0025 8.6E-08 63.0 4.1 28 108-135 115-142 (607)
254 1in4_A RUVB, holliday junction 96.3 0.0024 8.1E-08 57.9 3.6 24 111-134 52-75 (334)
255 2x8a_A Nuclear valosin-contain 96.3 0.0024 8.1E-08 56.6 3.5 24 112-135 46-69 (274)
256 1ixz_A ATP-dependent metallopr 96.2 0.0027 9.3E-08 54.7 3.7 25 111-135 50-74 (254)
257 2w58_A DNAI, primosome compone 96.2 0.0029 9.8E-08 52.4 3.7 24 111-134 55-78 (202)
258 1wf3_A GTP-binding protein; GT 96.2 0.0031 1.1E-07 56.7 4.2 38 111-149 8-45 (301)
259 2ce2_X GTPase HRAS; signaling 96.2 0.0025 8.5E-08 49.6 3.1 22 112-133 5-26 (166)
260 1lv7_A FTSH; alpha/beta domain 96.2 0.0027 9.4E-08 54.7 3.6 25 111-135 46-70 (257)
261 1ek0_A Protein (GTP-binding pr 96.2 0.0027 9.3E-08 49.8 3.3 23 112-134 5-27 (170)
262 1yqt_A RNAse L inhibitor; ATP- 96.2 0.003 1E-07 61.5 4.2 28 109-136 311-338 (538)
263 2erx_A GTP-binding protein DI- 96.2 0.0027 9.1E-08 50.0 3.2 22 112-133 5-26 (172)
264 1u8z_A RAS-related protein RAL 96.2 0.0028 9.5E-08 49.6 3.3 24 111-134 5-28 (168)
265 1svm_A Large T antigen; AAA+ f 96.2 0.003 1E-07 59.0 3.9 26 109-134 168-193 (377)
266 1z0j_A RAB-22, RAS-related pro 96.2 0.0029 9.8E-08 49.8 3.3 24 111-134 7-30 (170)
267 1c1y_A RAS-related protein RAP 96.2 0.0029 1E-07 49.6 3.3 22 112-133 5-26 (167)
268 1g16_A RAS-related protein SEC 96.2 0.0027 9.3E-08 49.9 3.1 23 112-134 5-27 (170)
269 2ocp_A DGK, deoxyguanosine kin 96.2 0.0032 1.1E-07 54.1 3.7 27 110-136 2-28 (241)
270 3q85_A GTP-binding protein REM 96.2 0.0027 9.3E-08 50.1 3.1 22 112-133 4-25 (169)
271 1wms_A RAB-9, RAB9, RAS-relate 96.2 0.0029 9.9E-08 50.3 3.3 24 111-134 8-31 (177)
272 2ged_A SR-beta, signal recogni 96.2 0.0036 1.2E-07 50.8 3.9 25 110-134 48-72 (193)
273 1p9r_A General secretion pathw 96.2 0.0024 8.1E-08 60.4 3.1 27 109-135 166-192 (418)
274 3bk7_A ABC transporter ATP-bin 96.2 0.0032 1.1E-07 62.3 4.2 27 109-135 381-407 (607)
275 1ky3_A GTP-binding protein YPT 96.2 0.003 1E-07 50.3 3.3 24 111-134 9-32 (182)
276 3iby_A Ferrous iron transport 96.2 0.0015 5.2E-08 57.3 1.6 24 111-134 2-25 (256)
277 1z08_A RAS-related protein RAB 96.2 0.003 1E-07 49.8 3.3 23 111-133 7-29 (170)
278 2oap_1 GSPE-2, type II secreti 96.2 0.003 1E-07 61.3 3.8 28 109-136 259-286 (511)
279 2grj_A Dephospho-COA kinase; T 96.2 0.003 1E-07 53.3 3.4 24 110-133 12-35 (192)
280 1r2q_A RAS-related protein RAB 96.1 0.0032 1.1E-07 49.4 3.3 23 111-133 7-29 (170)
281 1nlf_A Regulatory protein REPA 96.1 0.0034 1.1E-07 55.2 3.7 25 109-133 29-53 (279)
282 1mky_A Probable GTP-binding pr 96.1 0.0023 8E-08 60.3 2.8 53 111-164 2-56 (439)
283 2dpy_A FLII, flagellum-specifi 96.1 0.0033 1.1E-07 59.8 3.8 27 109-135 156-182 (438)
284 3j16_B RLI1P; ribosome recycli 96.1 0.0036 1.2E-07 62.0 4.2 27 110-136 378-404 (608)
285 1f5n_A Interferon-induced guan 96.1 0.0039 1.3E-07 61.5 4.5 39 111-152 39-77 (592)
286 3clv_A RAB5 protein, putative; 96.1 0.0033 1.1E-07 50.7 3.3 24 111-134 8-31 (208)
287 1njg_A DNA polymerase III subu 96.1 0.0037 1.3E-07 51.5 3.7 24 111-134 46-69 (250)
288 4dsu_A GTPase KRAS, isoform 2B 96.1 0.0033 1.1E-07 50.5 3.3 23 112-134 6-28 (189)
289 3q72_A GTP-binding protein RAD 96.1 0.0029 9.9E-08 49.8 2.9 23 112-134 4-26 (166)
290 3bc1_A RAS-related protein RAB 96.1 0.0034 1.1E-07 50.4 3.3 23 111-133 12-34 (195)
291 1r8s_A ADP-ribosylation factor 96.1 0.0035 1.2E-07 49.2 3.3 23 112-134 2-24 (164)
292 2xtp_A GTPase IMAP family memb 96.1 0.0033 1.1E-07 54.3 3.4 25 110-134 22-46 (260)
293 2obl_A ESCN; ATPase, hydrolase 96.1 0.0034 1.2E-07 57.8 3.7 27 109-135 70-96 (347)
294 1fzq_A ADP-ribosylation factor 96.0 0.0047 1.6E-07 50.2 4.0 25 109-133 15-39 (181)
295 1upt_A ARL1, ADP-ribosylation 96.0 0.0037 1.3E-07 49.3 3.3 24 111-134 8-31 (171)
296 2hxs_A RAB-26, RAS-related pro 96.0 0.0039 1.3E-07 49.6 3.4 23 111-133 7-29 (178)
297 1iy2_A ATP-dependent metallopr 96.0 0.0041 1.4E-07 54.5 3.9 25 111-135 74-98 (278)
298 2qz4_A Paraplegin; AAA+, SPG7, 96.0 0.0042 1.5E-07 53.1 3.9 26 110-135 39-64 (262)
299 3b9p_A CG5977-PA, isoform A; A 96.0 0.0044 1.5E-07 54.4 4.0 26 110-135 54-79 (297)
300 1sxj_A Activator 1 95 kDa subu 96.0 0.015 5.2E-07 55.8 8.1 25 110-134 77-101 (516)
301 3cnl_A YLQF, putative uncharac 96.0 0.0045 1.6E-07 54.6 4.1 39 111-150 100-138 (262)
302 3tw8_B RAS-related protein RAB 96.0 0.0029 9.8E-08 50.4 2.5 23 111-133 10-32 (181)
303 2oil_A CATX-8, RAS-related pro 96.0 0.0038 1.3E-07 50.8 3.3 24 111-134 26-49 (193)
304 2y8e_A RAB-protein 6, GH09086P 96.0 0.0036 1.2E-07 49.6 3.1 23 111-133 15-37 (179)
305 2cxx_A Probable GTP-binding pr 96.0 0.0032 1.1E-07 50.7 2.8 23 112-134 3-25 (190)
306 3ihw_A Centg3; RAS, centaurin, 96.0 0.0039 1.3E-07 51.0 3.3 23 111-133 21-43 (184)
307 2qnr_A Septin-2, protein NEDD5 96.0 0.0027 9.3E-08 57.0 2.5 22 112-133 20-41 (301)
308 4bas_A ADP-ribosylation factor 96.0 0.0028 9.6E-08 51.5 2.4 26 109-134 16-41 (199)
309 3h4m_A Proteasome-activating n 96.0 0.0049 1.7E-07 53.7 4.0 27 110-136 51-77 (285)
310 2qag_C Septin-7; cell cycle, c 96.0 0.0034 1.2E-07 59.4 3.2 23 112-134 33-55 (418)
311 3cf0_A Transitional endoplasmi 96.0 0.0048 1.6E-07 55.0 4.0 26 110-135 49-74 (301)
312 3t15_A Ribulose bisphosphate c 96.0 0.0051 1.7E-07 54.8 4.2 26 109-134 35-60 (293)
313 1p5z_B DCK, deoxycytidine kina 96.0 0.0029 9.9E-08 55.1 2.5 27 109-135 23-49 (263)
314 2fg5_A RAB-22B, RAS-related pr 96.0 0.0027 9.3E-08 51.9 2.2 24 111-134 24-47 (192)
315 2cjw_A GTP-binding protein GEM 96.0 0.0041 1.4E-07 51.3 3.3 23 111-133 7-29 (192)
316 2g6b_A RAS-related protein RAB 96.0 0.0043 1.5E-07 49.5 3.3 24 111-134 11-34 (180)
317 1puj_A YLQF, conserved hypothe 95.9 0.0047 1.6E-07 55.1 3.8 40 110-150 120-159 (282)
318 2px0_A Flagellar biosynthesis 95.9 0.0044 1.5E-07 55.7 3.7 26 109-134 104-129 (296)
319 1z0f_A RAB14, member RAS oncog 95.9 0.0044 1.5E-07 49.1 3.3 24 111-134 16-39 (179)
320 2a9k_A RAS-related protein RAL 95.9 0.0044 1.5E-07 49.5 3.3 24 111-134 19-42 (187)
321 3con_A GTPase NRAS; structural 95.9 0.0044 1.5E-07 50.2 3.3 23 111-133 22-44 (190)
322 2ohf_A Protein OLA1, GTP-bindi 95.9 0.0052 1.8E-07 57.8 4.2 42 109-152 21-62 (396)
323 2wsm_A Hydrogenase expression/ 95.9 0.0044 1.5E-07 51.7 3.4 24 110-133 30-53 (221)
324 3n70_A Transport activator; si 95.9 0.0054 1.9E-07 48.6 3.7 25 110-134 24-48 (145)
325 3llu_A RAS-related GTP-binding 95.9 0.0066 2.3E-07 49.8 4.4 25 110-134 20-44 (196)
326 2bov_A RAla, RAS-related prote 95.9 0.0045 1.5E-07 50.6 3.3 24 111-134 15-38 (206)
327 3euj_A Chromosome partition pr 95.9 0.0038 1.3E-07 60.2 3.3 25 111-135 30-54 (483)
328 2efe_B Small GTP-binding prote 95.9 0.0046 1.6E-07 49.3 3.3 24 111-134 13-36 (181)
329 3tkl_A RAS-related protein RAB 95.9 0.0043 1.5E-07 50.3 3.1 24 111-134 17-40 (196)
330 1nrj_B SR-beta, signal recogni 95.9 0.0057 1.9E-07 50.8 3.9 25 110-134 12-36 (218)
331 2chg_A Replication factor C sm 95.9 0.0052 1.8E-07 50.2 3.6 23 111-133 39-61 (226)
332 3pxg_A Negative regulator of g 95.9 0.0093 3.2E-07 56.7 5.8 25 110-134 201-225 (468)
333 1m7b_A RND3/RHOE small GTP-bin 95.9 0.0045 1.5E-07 50.2 3.1 23 111-133 8-30 (184)
334 3kkq_A RAS-related protein M-R 95.9 0.0048 1.6E-07 49.5 3.2 23 111-133 19-41 (183)
335 2bme_A RAB4A, RAS-related prot 95.9 0.0044 1.5E-07 49.8 3.0 24 111-134 11-34 (186)
336 1mh1_A RAC1; GTP-binding, GTPa 95.8 0.005 1.7E-07 49.2 3.3 22 112-133 7-28 (186)
337 2dr3_A UPF0273 protein PH0284; 95.8 0.0052 1.8E-07 51.8 3.6 25 109-133 22-46 (247)
338 2e87_A Hypothetical protein PH 95.8 0.0085 2.9E-07 54.8 5.2 39 109-149 166-204 (357)
339 2gf9_A RAS-related protein RAB 95.8 0.0051 1.8E-07 49.9 3.3 24 111-134 23-46 (189)
340 1vg8_A RAS-related protein RAB 95.8 0.0051 1.7E-07 50.4 3.3 24 111-134 9-32 (207)
341 3gee_A MNME, tRNA modification 95.8 0.0029 9.8E-08 60.8 2.0 57 111-168 234-292 (476)
342 3t5g_A GTP-binding protein RHE 95.8 0.0048 1.6E-07 49.4 3.0 23 111-133 7-29 (181)
343 1l8q_A Chromosomal replication 95.8 0.0052 1.8E-07 54.9 3.5 26 109-134 36-61 (324)
344 1m2o_B GTP-binding protein SAR 95.8 0.005 1.7E-07 50.5 3.1 24 111-134 24-47 (190)
345 2gf0_A GTP-binding protein DI- 95.8 0.0051 1.7E-07 50.0 3.1 23 111-133 9-31 (199)
346 2iwr_A Centaurin gamma 1; ANK 95.8 0.0041 1.4E-07 49.7 2.5 24 111-134 8-31 (178)
347 1z06_A RAS-related protein RAB 95.8 0.0055 1.9E-07 49.7 3.3 23 111-133 21-43 (189)
348 1zbd_A Rabphilin-3A; G protein 95.8 0.0054 1.9E-07 50.3 3.2 24 111-134 9-32 (203)
349 2hf9_A Probable hydrogenase ni 95.8 0.0058 2E-07 51.2 3.4 24 110-133 38-61 (226)
350 2h17_A ADP-ribosylation factor 95.8 0.0048 1.6E-07 49.8 2.8 25 110-134 21-45 (181)
351 1jal_A YCHF protein; nucleotid 95.7 0.009 3.1E-07 55.5 5.0 40 111-152 3-42 (363)
352 3c5c_A RAS-like protein 12; GD 95.7 0.0057 1.9E-07 49.9 3.3 23 111-133 22-44 (187)
353 3dz8_A RAS-related protein RAB 95.7 0.0055 1.9E-07 49.9 3.1 24 111-134 24-47 (191)
354 1x3s_A RAS-related protein RAB 95.7 0.0059 2E-07 49.3 3.3 24 111-134 16-39 (195)
355 2a5j_A RAS-related protein RAB 95.7 0.0059 2E-07 49.7 3.3 24 111-134 22-45 (191)
356 3syl_A Protein CBBX; photosynt 95.7 0.0069 2.3E-07 53.3 3.9 26 109-134 66-91 (309)
357 3bwd_D RAC-like GTP-binding pr 95.7 0.006 2.1E-07 48.7 3.3 23 111-133 9-31 (182)
358 1ksh_A ARF-like protein 2; sma 95.7 0.0052 1.8E-07 49.6 2.9 25 110-134 18-42 (186)
359 1vma_A Cell division protein F 95.7 0.0058 2E-07 55.3 3.5 26 109-134 103-128 (306)
360 1moz_A ARL1, ADP-ribosylation 95.7 0.0044 1.5E-07 49.6 2.5 25 109-133 17-41 (183)
361 3i8s_A Ferrous iron transport 95.7 0.0032 1.1E-07 55.6 1.8 24 111-134 4-27 (274)
362 3ux8_A Excinuclease ABC, A sub 95.7 0.0035 1.2E-07 62.2 2.2 23 109-131 347-369 (670)
363 1zd9_A ADP-ribosylation factor 95.7 0.0052 1.8E-07 50.0 2.9 24 111-134 23-46 (188)
364 3oes_A GTPase rhebl1; small GT 95.7 0.0056 1.9E-07 50.4 3.1 24 111-134 25-48 (201)
365 3g5u_A MCG1178, multidrug resi 95.7 0.0059 2E-07 65.2 4.0 28 109-136 1058-1085(1284)
366 2bcg_Y Protein YP2, GTP-bindin 95.7 0.0057 2E-07 50.3 3.1 24 111-134 9-32 (206)
367 2atv_A RERG, RAS-like estrogen 95.7 0.0062 2.1E-07 49.8 3.3 24 111-134 29-52 (196)
368 1f6b_A SAR1; gtpases, N-termin 95.7 0.0039 1.3E-07 51.6 2.0 23 111-133 26-48 (198)
369 3k53_A Ferrous iron transport 95.7 0.0065 2.2E-07 53.1 3.5 24 111-134 4-27 (271)
370 3reg_A RHO-like small GTPase; 95.7 0.0065 2.2E-07 49.5 3.3 24 111-134 24-47 (194)
371 2p5s_A RAS and EF-hand domain 95.7 0.0065 2.2E-07 49.9 3.3 24 111-134 29-52 (199)
372 1ofh_A ATP-dependent HSL prote 95.6 0.007 2.4E-07 52.9 3.6 26 110-135 50-75 (310)
373 3cph_A RAS-related protein SEC 95.6 0.0068 2.3E-07 49.9 3.3 24 111-134 21-44 (213)
374 1zj6_A ADP-ribosylation factor 95.6 0.0065 2.2E-07 49.2 3.0 24 110-133 16-39 (187)
375 1f2t_A RAD50 ABC-ATPase; DNA d 95.6 0.0073 2.5E-07 48.6 3.3 22 111-132 24-45 (149)
376 2qby_A CDC6 homolog 1, cell di 95.6 0.0068 2.3E-07 54.3 3.4 26 109-134 44-69 (386)
377 4fcw_A Chaperone protein CLPB; 95.6 0.0088 3E-07 52.5 4.1 24 111-134 48-71 (311)
378 3h2y_A GTPase family protein; 95.6 0.0051 1.7E-07 56.9 2.6 42 110-151 160-206 (368)
379 2ew1_A RAS-related protein RAB 95.6 0.0067 2.3E-07 50.6 3.1 23 111-133 27-49 (201)
380 2fh5_B SR-beta, signal recogni 95.6 0.0072 2.5E-07 50.0 3.3 24 111-134 8-31 (214)
381 3cbq_A GTP-binding protein REM 95.6 0.0051 1.7E-07 50.8 2.3 23 111-133 24-46 (195)
382 1xzp_A Probable tRNA modificat 95.6 0.0023 7.8E-08 61.6 0.2 53 111-164 244-298 (482)
383 2o52_A RAS-related protein RAB 95.6 0.0063 2.1E-07 50.2 2.9 23 111-133 26-48 (200)
384 1udx_A The GTP-binding protein 95.5 0.0063 2.2E-07 57.5 3.2 39 110-150 157-195 (416)
385 2il1_A RAB12; G-protein, GDP, 95.5 0.0057 2E-07 50.0 2.6 22 112-133 28-49 (192)
386 3t34_A Dynamin-related protein 95.5 0.011 3.6E-07 54.1 4.6 23 111-133 35-57 (360)
387 1g8f_A Sulfate adenylyltransfe 95.5 0.0063 2.2E-07 59.1 3.2 27 109-135 394-420 (511)
388 1gwn_A RHO-related GTP-binding 95.5 0.0073 2.5E-07 50.4 3.1 23 111-133 29-51 (205)
389 3uk6_A RUVB-like 2; hexameric 95.5 0.008 2.7E-07 54.2 3.5 26 110-135 70-95 (368)
390 3m6a_A ATP-dependent protease 95.5 0.0084 2.9E-07 58.2 3.9 27 109-135 107-133 (543)
391 1d2n_A N-ethylmaleimide-sensit 95.5 0.0072 2.5E-07 52.6 3.1 26 109-134 63-88 (272)
392 2fv8_A H6, RHO-related GTP-bin 95.5 0.0077 2.6E-07 49.9 3.1 24 111-134 26-49 (207)
393 2q3h_A RAS homolog gene family 95.5 0.0078 2.7E-07 49.2 3.1 23 111-133 21-43 (201)
394 1tf7_A KAIC; homohexamer, hexa 95.5 0.008 2.7E-07 57.9 3.6 22 109-130 38-59 (525)
395 2f7s_A C25KG, RAS-related prot 95.4 0.0077 2.6E-07 50.0 3.1 23 111-133 26-48 (217)
396 3hws_A ATP-dependent CLP prote 95.4 0.01 3.5E-07 54.1 4.1 26 110-135 51-76 (363)
397 1xwi_A SKD1 protein; VPS4B, AA 95.4 0.0095 3.3E-07 53.8 3.8 25 110-134 45-69 (322)
398 2dby_A GTP-binding protein; GD 95.4 0.0074 2.5E-07 56.1 3.2 37 112-150 3-39 (368)
399 1pzn_A RAD51, DNA repair and r 95.4 0.0077 2.6E-07 55.3 3.2 26 109-134 130-155 (349)
400 2fu5_C RAS-related protein RAB 95.4 0.0047 1.6E-07 49.6 1.6 23 111-133 9-31 (183)
401 3ec1_A YQEH GTPase; atnos1, at 95.4 0.012 4.1E-07 54.4 4.6 42 110-151 162-207 (369)
402 1fnn_A CDC6P, cell division co 95.4 0.0093 3.2E-07 53.7 3.7 25 111-135 45-69 (389)
403 2h57_A ADP-ribosylation factor 95.4 0.0057 2E-07 49.7 2.0 24 111-134 22-45 (190)
404 2g3y_A GTP-binding protein GEM 95.4 0.0085 2.9E-07 50.9 3.2 23 111-133 38-60 (211)
405 1jwy_B Dynamin A GTPase domain 95.4 0.011 3.6E-07 52.3 3.9 24 111-134 25-48 (315)
406 2atx_A Small GTP binding prote 95.4 0.0088 3E-07 48.6 3.1 23 111-133 19-41 (194)
407 3tqf_A HPR(Ser) kinase; transf 95.4 0.01 3.4E-07 50.1 3.4 25 109-133 15-39 (181)
408 2iw3_A Elongation factor 3A; a 95.3 0.0091 3.1E-07 62.2 3.8 24 109-132 460-483 (986)
409 3pfi_A Holliday junction ATP-d 95.3 0.012 4E-07 52.6 4.1 27 110-136 55-81 (338)
410 4dcu_A GTP-binding protein ENG 95.3 0.028 9.5E-07 53.1 6.9 57 110-167 195-253 (456)
411 1sxj_C Activator 1 40 kDa subu 95.3 0.01 3.5E-07 53.5 3.5 21 113-133 49-69 (340)
412 3szr_A Interferon-induced GTP- 95.3 0.0057 1.9E-07 60.3 2.0 24 111-134 46-69 (608)
413 2j1l_A RHO-related GTP-binding 95.3 0.0092 3.1E-07 49.8 3.0 23 111-133 35-57 (214)
414 3t5d_A Septin-7; GTP-binding p 95.3 0.0077 2.6E-07 52.8 2.6 24 111-134 9-32 (274)
415 2r62_A Cell division protease 95.3 0.0048 1.7E-07 53.3 1.3 24 111-134 45-68 (268)
416 2iw3_A Elongation factor 3A; a 95.3 0.0057 1.9E-07 63.7 2.0 27 109-135 698-724 (986)
417 3cpj_B GTP-binding protein YPT 95.3 0.01 3.5E-07 49.8 3.3 24 111-134 14-37 (223)
418 2gco_A H9, RHO-related GTP-bin 95.2 0.01 3.5E-07 48.9 3.1 24 111-134 26-49 (201)
419 2p67_A LAO/AO transport system 95.2 0.011 3.7E-07 53.9 3.6 25 109-133 55-79 (341)
420 2v1u_A Cell division control p 95.2 0.0089 3.1E-07 53.6 3.0 26 109-134 43-68 (387)
421 2hup_A RAS-related protein RAB 95.2 0.01 3.4E-07 49.1 3.1 24 111-134 30-53 (201)
422 2b6h_A ADP-ribosylation factor 95.2 0.0094 3.2E-07 48.9 2.9 23 111-133 30-52 (192)
423 3q3j_B RHO-related GTP-binding 95.2 0.011 3.7E-07 49.5 3.3 23 111-133 28-50 (214)
424 1wxq_A GTP-binding protein; st 95.2 0.0091 3.1E-07 55.9 3.0 39 112-152 2-40 (397)
425 3lda_A DNA repair protein RAD5 95.2 0.011 3.8E-07 55.5 3.6 23 109-131 177-199 (400)
426 3eie_A Vacuolar protein sortin 95.2 0.012 4.3E-07 52.7 3.8 26 110-135 51-76 (322)
427 2qgz_A Helicase loader, putati 95.2 0.013 4.3E-07 52.8 3.8 24 110-133 152-175 (308)
428 3qf7_A RAD50; ABC-ATPase, ATPa 95.2 0.011 3.7E-07 54.6 3.4 21 111-131 24-44 (365)
429 2j0v_A RAC-like GTP-binding pr 95.2 0.011 3.7E-07 48.8 3.1 23 111-133 10-32 (212)
430 1h65_A Chloroplast outer envel 95.2 0.016 5.5E-07 50.6 4.3 24 111-134 40-63 (270)
431 4gzl_A RAS-related C3 botulinu 95.2 0.011 3.8E-07 48.9 3.1 23 111-133 31-53 (204)
432 2bjv_A PSP operon transcriptio 95.1 0.013 4.6E-07 50.5 3.7 25 111-135 30-54 (265)
433 3co5_A Putative two-component 95.1 0.0061 2.1E-07 48.3 1.3 25 110-134 27-51 (143)
434 1um8_A ATP-dependent CLP prote 95.1 0.015 5E-07 53.2 4.1 26 110-135 72-97 (376)
435 3r7w_A Gtpase1, GTP-binding pr 95.1 0.017 6E-07 51.6 4.5 24 111-134 4-27 (307)
436 1sxj_E Activator 1 40 kDa subu 95.1 0.01 3.4E-07 53.2 2.8 22 112-133 38-59 (354)
437 3d8b_A Fidgetin-like protein 1 95.0 0.015 5E-07 53.2 3.9 27 109-135 116-142 (357)
438 2qby_B CDC6 homolog 3, cell di 95.0 0.014 4.7E-07 52.7 3.6 25 109-133 44-68 (384)
439 3a1s_A Iron(II) transport prot 95.0 0.013 4.5E-07 51.2 3.4 24 111-134 6-29 (258)
440 3p32_A Probable GTPase RV1496/ 95.0 0.016 5.6E-07 53.0 4.1 25 109-133 78-102 (355)
441 1ko7_A HPR kinase/phosphatase; 95.0 0.014 4.6E-07 53.4 3.4 25 110-134 144-168 (314)
442 2aka_B Dynamin-1; fusion prote 95.0 0.015 5E-07 50.9 3.5 24 111-134 27-50 (299)
443 3geh_A MNME, tRNA modification 95.0 0.0095 3.2E-07 56.9 2.4 57 111-168 225-283 (462)
444 1zu4_A FTSY; GTPase, signal re 95.0 0.015 5E-07 52.9 3.6 26 109-134 104-129 (320)
445 3def_A T7I23.11 protein; chlor 95.0 0.019 6.5E-07 49.9 4.2 24 111-134 37-60 (262)
446 3ux8_A Excinuclease ABC, A sub 94.9 0.013 4.3E-07 58.3 3.3 19 109-127 43-61 (670)
447 1w1w_A Structural maintenance 94.9 0.016 5.4E-07 54.2 3.8 25 110-134 26-50 (430)
448 2x77_A ADP-ribosylation factor 94.9 0.0093 3.2E-07 48.2 2.0 23 111-133 23-45 (189)
449 4aby_A DNA repair protein RECN 94.9 0.005 1.7E-07 56.8 0.3 25 109-134 60-84 (415)
450 3k1j_A LON protease, ATP-depen 94.9 0.016 5.4E-07 56.9 3.9 27 110-136 60-86 (604)
451 2z4s_A Chromosomal replication 94.9 0.015 5E-07 55.0 3.4 24 110-133 130-153 (440)
452 2yc2_C IFT27, small RAB-relate 94.8 0.0055 1.9E-07 50.0 0.4 23 111-133 21-43 (208)
453 2orw_A Thymidine kinase; TMTK, 94.8 0.019 6.4E-07 47.8 3.7 24 110-133 3-26 (184)
454 1wb9_A DNA mismatch repair pro 94.8 0.016 5.4E-07 59.1 3.8 25 109-133 606-630 (800)
455 1qhl_A Protein (cell division 94.8 0.0022 7.7E-08 55.7 -2.2 25 111-135 28-52 (227)
456 3qks_A DNA double-strand break 94.8 0.017 5.8E-07 48.7 3.3 22 111-132 24-45 (203)
457 4djt_A GTP-binding nuclear pro 94.8 0.0062 2.1E-07 50.6 0.5 23 111-133 12-34 (218)
458 2qp9_X Vacuolar protein sortin 94.8 0.017 6E-07 52.7 3.6 26 110-135 84-109 (355)
459 1ewq_A DNA mismatch repair pro 94.8 0.017 5.7E-07 58.7 3.7 24 110-133 576-599 (765)
460 2r44_A Uncharacterized protein 94.7 0.014 4.8E-07 52.1 2.8 26 111-136 47-72 (331)
461 2ga8_A Hypothetical 39.9 kDa p 94.7 0.019 6.4E-07 53.4 3.6 24 111-134 25-48 (359)
462 1g41_A Heat shock protein HSLU 94.7 0.022 7.4E-07 54.4 4.1 28 111-138 51-78 (444)
463 4b4t_K 26S protease regulatory 94.7 0.02 6.8E-07 54.3 3.8 27 109-135 205-231 (428)
464 2qag_A Septin-2, protein NEDD5 94.7 0.014 4.6E-07 53.8 2.6 22 112-133 39-60 (361)
465 1sxj_D Activator 1 41 kDa subu 94.7 0.017 5.9E-07 51.4 3.2 22 112-133 60-81 (353)
466 1tue_A Replication protein E1; 94.6 0.018 6.1E-07 49.8 3.1 25 110-134 58-82 (212)
467 4b4t_M 26S protease regulatory 94.6 0.021 7.2E-07 54.3 3.8 27 109-135 214-240 (434)
468 1hqc_A RUVB; extended AAA-ATPa 94.6 0.013 4.6E-07 51.6 2.3 25 110-134 38-62 (324)
469 3kl4_A SRP54, signal recogniti 94.6 0.016 5.4E-07 55.1 2.8 25 109-133 96-120 (433)
470 1ypw_A Transitional endoplasmi 94.6 0.018 6.3E-07 58.5 3.5 28 109-136 237-264 (806)
471 1ls1_A Signal recognition part 94.6 0.021 7.2E-07 51.1 3.5 26 109-134 97-122 (295)
472 4dkx_A RAS-related protein RAB 94.5 0.021 7.1E-07 48.7 3.3 22 112-133 15-36 (216)
473 2zan_A Vacuolar protein sortin 94.5 0.023 7.8E-07 53.7 3.9 25 110-134 167-191 (444)
474 3vfd_A Spastin; ATPase, microt 94.5 0.025 8.4E-07 52.1 4.0 26 110-135 148-173 (389)
475 3hr8_A Protein RECA; alpha and 94.5 0.02 6.8E-07 53.0 3.3 25 109-133 60-84 (356)
476 3pvs_A Replication-associated 94.5 0.022 7.4E-07 54.1 3.7 117 111-243 51-177 (447)
477 2ce7_A Cell division protein F 94.5 0.022 7.6E-07 54.7 3.8 25 111-135 50-74 (476)
478 4b4t_L 26S protease subunit RP 94.5 0.024 8.1E-07 54.0 3.8 27 109-135 214-240 (437)
479 1lnz_A SPO0B-associated GTP-bi 94.5 0.018 6.1E-07 52.9 2.9 55 112-168 160-217 (342)
480 2qen_A Walker-type ATPase; unk 94.5 0.025 8.4E-07 49.9 3.7 24 111-134 32-55 (350)
481 3gj0_A GTP-binding nuclear pro 94.5 0.01 3.5E-07 49.5 1.1 21 111-131 16-36 (221)
482 3qkt_A DNA double-strand break 94.4 0.022 7.7E-07 51.6 3.5 21 111-131 24-44 (339)
483 1yrb_A ATP(GTP)binding protein 94.3 0.033 1.1E-06 47.6 4.1 25 109-133 13-37 (262)
484 1tf7_A KAIC; homohexamer, hexa 94.3 0.025 8.5E-07 54.5 3.6 26 109-134 280-305 (525)
485 1iqp_A RFCS; clamp loader, ext 94.3 0.03 1E-06 49.1 3.8 23 111-133 47-69 (327)
486 2dhr_A FTSH; AAA+ protein, hex 94.3 0.031 1.1E-06 54.0 4.2 25 111-135 65-89 (499)
487 2fna_A Conserved hypothetical 94.2 0.026 8.9E-07 49.8 3.4 24 111-134 31-54 (357)
488 4b4t_J 26S protease regulatory 94.2 0.027 9.2E-07 53.1 3.6 27 109-135 181-207 (405)
489 2c9o_A RUVB-like 1; hexameric 94.2 0.029 9.8E-07 53.0 3.8 26 110-135 63-88 (456)
490 1jr3_A DNA polymerase III subu 94.2 0.031 1.1E-06 50.1 3.8 24 111-134 39-62 (373)
491 3th5_A RAS-related C3 botulinu 93.2 0.0087 3E-07 49.2 0.0 23 111-133 31-53 (204)
492 2zr9_A Protein RECA, recombina 94.1 0.03 1E-06 51.4 3.6 25 109-133 60-84 (349)
493 3thx_B DNA mismatch repair pro 94.1 0.02 6.8E-07 59.3 2.6 24 109-132 672-695 (918)
494 2o5v_A DNA replication and rep 94.1 0.029 9.8E-07 51.9 3.4 23 111-133 27-49 (359)
495 1g8p_A Magnesium-chelatase 38 94.1 0.016 5.5E-07 51.6 1.6 25 111-135 46-70 (350)
496 1e69_A Chromosome segregation 94.0 0.022 7.7E-07 51.2 2.5 22 111-132 25-46 (322)
497 2zts_A Putative uncharacterize 94.0 0.037 1.2E-06 46.6 3.7 24 109-132 29-52 (251)
498 2chq_A Replication factor C sm 94.0 0.035 1.2E-06 48.5 3.6 22 112-133 40-61 (319)
499 3thx_A DNA mismatch repair pro 94.0 0.029 1E-06 58.1 3.5 22 109-130 661-682 (934)
500 3dm5_A SRP54, signal recogniti 93.9 0.031 1.1E-06 53.3 3.4 25 109-133 99-123 (443)
No 1
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=100.00 E-value=3.3e-42 Score=314.79 Aligned_cols=145 Identities=37% Similarity=0.628 Sum_probs=136.4
Q ss_pred CCCcchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeec-CHHHHHHH
Q psy14166 92 EEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFV-SHETMTSL 170 (264)
Q Consensus 92 ~~~~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fv-s~~~f~~~ 170 (264)
+++++||+|++++++ ..|+|||+||+ |+||.++|++.+|+.|+.+|+||||+||+||++|++|||| ++++|+++
T Consensus 84 ~~~~~YE~V~~~~~~--~~RpvVl~Gp~---K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~ 158 (292)
T 3tvt_A 84 ENVLSYEAVQRLSIN--YTRPVIILGPL---KDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERD 158 (292)
T ss_dssp --CCCEEEEEEEECS--SCCCEEEESTT---HHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHH
T ss_pred ccccchheEEeccCC--CCCeEEEeCCC---HHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHH
Confidence 357899999999876 45999999994 9999999999999999999999999999999999999999 88999999
Q ss_pred HHcCCcceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHH
Q psy14166 171 ISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRI 241 (264)
Q Consensus 171 i~~~~flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~ 241 (264)
+.+|.|+||+++.||+|||+.++|++++++|++||||++++|+++|+...+.|++|||.|||+++|+++++
T Consensus 159 i~~~~flE~a~~~gn~YGT~~~~V~~~~~~gk~viLdid~qg~~~lk~~~~~pi~IFI~PpS~e~L~~r~~ 229 (292)
T 3tvt_A 159 IQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNR 229 (292)
T ss_dssp HHTTCEEEEEEETTEEEEEEHHHHHHHHHHTCEEEECCCTHHHHHHHHTTCCCEEEEECCSCHHHHHHTCT
T ss_pred HhcCceEEEEEEccceeEEehHHHHHHHHcCCcEEEeccchhhhhcccccccceEEEEECCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999987543
No 2
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=100.00 E-value=6.4e-39 Score=293.22 Aligned_cols=147 Identities=35% Similarity=0.639 Sum_probs=138.7
Q ss_pred CCCCCCCcchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeec-CHHH
Q psy14166 88 DFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFV-SHET 166 (264)
Q Consensus 88 ~~~~~~~~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fv-s~~~ 166 (264)
+++...+++||+|+++++. .+++|||+|| ||+||.++|++.+|+.|..+|+||||+||+||++|++|||+ |+++
T Consensus 85 ~~~~~~~~~Ye~V~~~~~~--~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~ee 159 (295)
T 1kjw_A 85 QGREDSVLSYETVTQMEVH--YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREK 159 (295)
T ss_dssp CCCCCCCCCEEEEEEEECC--SCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHH
T ss_pred ccccCCCCCcceeeeecCC--CCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHH
Confidence 4556678999999998765 4599999999 79999999999999889999999999999999999999999 9999
Q ss_pred HHHHHHcCCcceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166 167 MTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKES 239 (264)
Q Consensus 167 f~~~i~~~~flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~ 239 (264)
|++++.+|.|+||+++.||+|||+.++|++++++|++||||+++++++.++...+.|++|||.|||+++|+++
T Consensus 160 f~~~i~~g~flE~~~~~g~~YGt~~~~V~~~~~~G~~vildid~~g~~~l~~~~~~pi~IfI~pps~~~L~~L 232 (295)
T 1kjw_A 160 MEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEI 232 (295)
T ss_dssp HHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCEEEEECCSSHHHHHHH
T ss_pred HHHHHHCCCcEEEEEEcCcEeeeeHHHHHHHHhcCCeEEEEeCHHHHHHHHhcccCCeEEEEECCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998889999999999999999873
No 3
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=100.00 E-value=1.6e-38 Score=273.03 Aligned_cols=136 Identities=35% Similarity=0.656 Sum_probs=127.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTS 190 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~ 190 (264)
|+|||+|||||||+||++.|++.+|+.|..+|+||||+||+||.+|+||||+|.++|++++.+|.|+||+++.||+|||+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~ 81 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST 81 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeee
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEcCHHHHHHHhcC-CCCcEEEEEeCCChHHHHHHHHhhccCC
Q psy14166 191 SDSVLELVNSGRVAVLNPAYQSLKVLRSP-AFKPLVLFIAPPPFAALKESRITAFARS 247 (264)
Q Consensus 191 ~~si~~vl~~Gki~vld~~~~~~~~Lr~~-~~~p~vIfI~pps~e~l~~~r~~~~~~~ 247 (264)
.++|.+++++|++||+|++++++++++.. .+++++|||.|||.++|+++ ...++..
T Consensus 82 ~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~R-L~~Rg~e 138 (186)
T 1ex7_A 82 VASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKR-LEGRGTE 138 (186)
T ss_dssp HHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHH-HHHHCCS
T ss_pred cceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHH-HHhcCCC
Confidence 99999999999999999999999999974 67999999999999999874 4444433
No 4
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=100.00 E-value=2.2e-35 Score=297.93 Aligned_cols=147 Identities=35% Similarity=0.644 Sum_probs=139.2
Q ss_pred CCCCCCCcchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeec-CHHH
Q psy14166 88 DFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFV-SHET 166 (264)
Q Consensus 88 ~~~~~~~~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fv-s~~~ 166 (264)
+++.+.+++||+|+++++. .+|+|||+||+ |+||.++|+..+|+.|.++|+||||+||+||.+|++|||+ |+++
T Consensus 511 ~~~~~~~~~Ye~V~~~~~~--~~r~vvl~GP~---K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~ 585 (721)
T 2xkx_A 511 QGREDSVLSYETVTQMEVH--YARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREK 585 (721)
T ss_pred hcccccCCCceeeecccCC--CCCEEEEECCC---HHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHH
Confidence 4567788999999998766 45999999995 9999999999999889999999999999999999999999 9999
Q ss_pred HHHHHHcCCcceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166 167 MTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKES 239 (264)
Q Consensus 167 f~~~i~~~~flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~ 239 (264)
|++++.+|.|+||+++.||+|||+.++|++++++|++||||++++++++|+...+.|++|||.|||+++|+++
T Consensus 586 f~~~i~~~~flE~~~~~g~~YGt~~~~v~~~~~~g~~~ildi~~~~~~~l~~~~~~p~~ifi~pps~~~L~~l 658 (721)
T 2xkx_A 586 MEKDIRAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEI 658 (721)
T ss_pred HHHHHhcCCceEEEEECCccceeeHHHHHHHHHCCCcEEEeCCHHHHHHHHhcccCCEEEEEeCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999899999999999999999874
No 5
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.7e-33 Score=243.76 Aligned_cols=126 Identities=45% Similarity=0.835 Sum_probs=122.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG 188 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG 188 (264)
.+++|+|+||||||||||++.|++.+|+.|...+++|||+|+.||.+|++|+|+|.++|++++.++.|+|++++.||+||
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~n~YG 97 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFG 97 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhhceecc
Confidence 45999999999999999999999999877889999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChH
Q psy14166 189 TSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFA 234 (264)
Q Consensus 189 t~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e 234 (264)
|+.++|++++++|++||||++++++++++...+.|++|||.|||.+
T Consensus 98 t~~~~v~~~l~~G~~vildid~qg~~~~~~~~~~~~~Ifi~Pps~~ 143 (197)
T 3ney_A 98 TKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQG 143 (197)
T ss_dssp EEHHHHHHHHHTTCEEEEECCGGGHHHHCSTTTCEEEEEEEECCBS
T ss_pred cchhhHHHHHhcCCeEEEEECHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 9999999999999999999999999999999999999999999984
No 6
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=99.97 E-value=7.2e-31 Score=253.18 Aligned_cols=123 Identities=18% Similarity=0.334 Sum_probs=98.1
Q ss_pred CCCCCCCCCCcchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCH
Q psy14166 85 ETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSH 164 (264)
Q Consensus 85 ~~~~~~~~~~~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~ 164 (264)
.++.++.+++++||||+++++. .+++|||+||||+| |.++|++.+|+.|.. +||| ||+||++|++|||
T Consensus 201 ~~~~~~~~~~~~YEeV~~~~~~--~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s---~~TR-pR~gE~dG~~Y~F--- 268 (468)
T 3shw_A 201 LSAQPVQTKFPAYERVVLREAG--FLRPVTIFGPIADV---AREKLAREEPDIYQI---AKSE-PRDAGTDQRSSGI--- 268 (468)
T ss_dssp ------CCCCCSEEEEEEECCS--SCCCEEEESTTHHH---HHHHHHHHCTTTEEE---CCCB-C----------CB---
T ss_pred cccccccccCCCcceeEcccCC--CCCEEEEECCCHHH---HHHHHHHhCCCceee---ecCC-CCCcccccccCCc---
Confidence 4778889999999999998766 56999999999999 999999999998865 4699 8999999999998
Q ss_pred HHHHHHHHcCCcceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHHhh
Q psy14166 165 ETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRITA 243 (264)
Q Consensus 165 ~~f~~~i~~~~flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~~~ 243 (264)
|+.++|++++++|++||||++++++++|+...+.|++|||.|||+++|+++|++.
T Consensus 269 ------------------------Ts~~~V~~vl~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~e~L~~~~~rl 323 (468)
T 3shw_A 269 ------------------------IRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRL 323 (468)
T ss_dssp ------------------------CCHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECSCHHHHHHHHHHH
T ss_pred ------------------------ccHHHHHHHHHCCCeEEEEeCHHHHHHHHhcCCCCEEEEEeCcCHHHHHHHHhcc
Confidence 7899999999999999999999999999999999999999999999999865544
No 7
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=99.96 E-value=2.8e-30 Score=244.36 Aligned_cols=122 Identities=18% Similarity=0.368 Sum_probs=103.9
Q ss_pred CCCCCCCCCcchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHH
Q psy14166 86 TDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHE 165 (264)
Q Consensus 86 ~~~~~~~~~~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~ 165 (264)
+++++.+++++||||+++++. .+++|||+|||| +||.++|++.+|+.|.. |||+||+||++|++|||+
T Consensus 210 ~~~~~~~~~~~YE~V~~~~~~--~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~----~tr~pR~gE~dG~~Y~Fv--- 277 (391)
T 3tsz_A 210 SAQPVQTKFPAYERVVLREAG--FLRPVTIFGPIA---DVAREKLAREEPDIYQI----AKSEPRDAGTDQRSSGII--- 277 (391)
T ss_dssp -------CCCSEEEEEEEECS--SCCCEEEESTTH---HHHHHHHHHHCTTTEEE----CCCCCCCSSSCCC--CCC---
T ss_pred ccccccccCCCcceEECcCCC--CCCEEEEECCCH---HHHHHHHHhhCcccccc----ccCCCCCcccCCccCCcC---
Confidence 456778889999999998765 569999999998 89999999999998764 689999999999999998
Q ss_pred HHHHHHHcCCcceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHHhh
Q psy14166 166 TMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRITA 243 (264)
Q Consensus 166 ~f~~~i~~~~flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~~~ 243 (264)
+.++|++++++|++||||++++++++|+...+.|++|||.|||+++|+++|.+.
T Consensus 278 ------------------------~~~~V~~~~~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~~~L~~~~~r~ 331 (391)
T 3tsz_A 278 ------------------------RLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRL 331 (391)
T ss_dssp ------------------------CHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECCCHHHHHHHHHHH
T ss_pred ------------------------cHHHHHHHHHcCCEEEEEeCHHHHHHHHhCCCCCEEEEEeCcCHHHHHHHHhcC
Confidence 589999999999999999999999999999999999999999999999865443
No 8
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=99.95 E-value=1.8e-28 Score=206.63 Aligned_cols=130 Identities=41% Similarity=0.723 Sum_probs=119.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG 188 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG 188 (264)
.+++++|+||||||||||++.|+..++..+...++||||+|+.+|.+|.+|+|++.++|..++.++.|++++++.+|+||
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~yg 83 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYG 83 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEEEEEcCcccc
Confidence 46899999999999999999999988766788999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHH
Q psy14166 189 TSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKE 238 (264)
Q Consensus 189 t~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~ 238 (264)
++.+.+.+++++|++||+|++++++..++...+.+.+|||.||+.++|++
T Consensus 84 ~~~~~i~~~l~~g~~vil~id~~g~~~~~~~~~~~~~ifi~~p~~~~l~~ 133 (180)
T 1kgd_A 84 TKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLN 133 (180)
T ss_dssp EEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEEEEEEECCSCCTTSC
T ss_pred ccHHHHHHHHHCCCeEEEEECHHHHHHHHHhCCCcEEEEEECCCHHHHHh
Confidence 99999999999999999999999999999887889999999999877654
No 9
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.95 E-value=4.6e-28 Score=204.90 Aligned_cols=130 Identities=38% Similarity=0.711 Sum_probs=119.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGT 189 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt 189 (264)
+++++|+||||||||||++.|+...++.++.++++|||+|+.||++|.+|+|++.+.|..++.++.|++++++.+++||+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~yg~ 80 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGS 80 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEEEEeceeccC
Confidence 47899999999999999999999998789999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCeEEEEcCHHHHHHHhc-CCCCcEEEEEeCCChHHHHHH
Q psy14166 190 SSDSVLELVNSGRVAVLNPAYQSLKVLRS-PAFKPLVLFIAPPPFAALKES 239 (264)
Q Consensus 190 ~~~si~~vl~~Gki~vld~~~~~~~~Lr~-~~~~p~vIfI~pps~e~l~~~ 239 (264)
+.+.+.++++.|++||+++++++++.++. ..+.+.+|||.||+++.|+++
T Consensus 81 ~~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~R 131 (186)
T 3a00_A 81 TVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKR 131 (186)
T ss_dssp EHHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC------
T ss_pred cHHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHH
Confidence 99999999999999999999999999999 889999999999999888774
No 10
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.95 E-value=1.2e-27 Score=206.25 Aligned_cols=131 Identities=32% Similarity=0.525 Sum_probs=124.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG 188 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG 188 (264)
.+++|+|+||||||||||++.|+..++..+...+++|||+|+.+|.+|.+|+|++.+.|..++.++.|++++++.+|+||
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~yg 86 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYG 86 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccCC
Confidence 56899999999999999999999998866889999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166 189 TSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKES 239 (264)
Q Consensus 189 t~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~ 239 (264)
++.+.+.+++++|++||+|+++++...++.....+++|||.|||.++|+++
T Consensus 87 ~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~~~~~~i~i~~ps~~~l~~R 137 (208)
T 3tau_A 87 TPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNR 137 (208)
T ss_dssp EEHHHHHHHHHTTCCEEEECCHHHHHHHHHHCTTSEEEEEECTTTTTSSCC
T ss_pred CcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhCCCeEEEEEeCCCHHHHHHH
Confidence 999999999999999999999999999998888999999999998887653
No 11
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.94 E-value=2.5e-26 Score=196.69 Aligned_cols=133 Identities=26% Similarity=0.529 Sum_probs=122.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCcee
Q psy14166 108 TLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLY 187 (264)
Q Consensus 108 ~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~Y 187 (264)
..+++|+|+||||||||||++.|++..+..+...++||||+++.+|.+|.+|+|++.++|..++.++.|++++++.|+.|
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFY 89 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCee
Confidence 36789999999999999999999998875588899999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCC--CcEEEEEeCCChHHHHHHH
Q psy14166 188 GTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAF--KPLVLFIAPPPFAALKESR 240 (264)
Q Consensus 188 Gt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~--~p~vIfI~pps~e~l~~~r 240 (264)
|++.+.+.+++++|++||+|++++++..++.... .+.+|||.|++.+++.++.
T Consensus 90 ~~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl 144 (204)
T 2qor_A 90 GTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRL 144 (204)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHH
Confidence 9999999999999999999999999999987655 6799999988899988744
No 12
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=99.92 E-value=9.2e-26 Score=207.13 Aligned_cols=111 Identities=28% Similarity=0.406 Sum_probs=93.7
Q ss_pred CCCcchHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHH
Q psy14166 92 EEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLI 171 (264)
Q Consensus 92 ~~~~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i 171 (264)
.++++||+|+++++. ..|+|||+|| ||++|+++|+..+|++|+.+++. + .++
T Consensus 129 ~~~~~YE~V~~~~~~--~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~~-~----------------------r~i 180 (308)
T 3kfv_A 129 GRYPPYERVVLREAS--FKRPVVILGP---VADIAMQKLTAEMPDQFEIAETV-S----------------------RTD 180 (308)
T ss_dssp HTCCSEEEEEEEECS--SCCCEEEEST---THHHHHHHHHHHCTTTEEECCCC---------------------------
T ss_pred CCCcCchheeccccC--CCCeEEEeCc---cHHHHHHHHHHhCcccccccccc-c----------------------ccc
Confidence 357899999999865 4599999999 69999999999999999999872 1 115
Q ss_pred HcCCcceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHHHh
Q psy14166 172 SAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRIT 242 (264)
Q Consensus 172 ~~~~flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~~ 242 (264)
.++.|| +.++|++++++|++||||++++|+++|+...+.|++|||.|||+++|+++|.+
T Consensus 181 ~~~~fi------------s~~~V~~vl~~Gk~~ILDId~QGa~~lk~~~~~pi~IFI~PPS~eeL~~rr~R 239 (308)
T 3kfv_A 181 SPSKII------------KLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKALRQW 239 (308)
T ss_dssp ----CC------------CHHHHHHHHHTTCEEEECCCHHHHHHHHHTTCCCEEEEEEESCHHHHHHHHHH
T ss_pred cCCCee------------cHHHHHHHHHCCCcEEEEECHHHHHHHHhcCCCCEEEEEeCCCHHHHHHHHhc
Confidence 577776 79999999999999999999999999999999999999999999999986443
No 13
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.92 E-value=1.5e-24 Score=185.82 Aligned_cols=132 Identities=39% Similarity=0.680 Sum_probs=122.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG 188 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG 188 (264)
.+++++|+||||||||||++.|...++..++..++||||+|+.|+++|.+|+|++.++|..++.++.|++++++.+|+||
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n~~g 82 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYG 82 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecCccCC
Confidence 35899999999999999999999988878999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHH
Q psy14166 189 TSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESR 240 (264)
Q Consensus 189 t~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r 240 (264)
++.+.++++++.|++++++++++++..++...+.|.+|||++|+++.|.++.
T Consensus 83 ~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~ 134 (198)
T 1lvg_A 83 TSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRL 134 (198)
T ss_dssp EEHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSCHHHHHHHH
T ss_pred CCHHHHHHHHHcCCcEEEECCHHHHHHHHhcCCCcEEEEEeCCCHHHHHHHH
Confidence 9999999999999999999999999999877889999999999998887743
No 14
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.91 E-value=6.2e-24 Score=185.91 Aligned_cols=132 Identities=28% Similarity=0.484 Sum_probs=121.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHhcCCC-CccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCce
Q psy14166 108 TLRRPVVLIGPSGVGRSELKRRLIALDPD-KFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHL 186 (264)
Q Consensus 108 ~~~r~ivLiGpsGvGKsTL~~~L~~~~p~-~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~ 186 (264)
..+++++|+||||||||||++.|+...|. .+...|++|||+++.+|.+|++|+|++.+.|..+..++.|+|+.++.+++
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~ 93 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNY 93 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhcc
Confidence 36799999999999999999999999873 46778999999999999999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166 187 YGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKES 239 (264)
Q Consensus 187 YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~ 239 (264)
||++.+.+.++++.|+++|||+|+++.+.++..-.....|||.+|+++.|+++
T Consensus 94 yg~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~~~~tI~i~th~~~~l~~R 146 (219)
T 1s96_A 94 YGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRR 146 (219)
T ss_dssp EEEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSSHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHccCCEEEEEECCCHHHHHHH
Confidence 99999999999999999999999999999987555789999999999999874
No 15
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.86 E-value=1e-20 Score=159.97 Aligned_cols=131 Identities=29% Similarity=0.538 Sum_probs=121.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG 188 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG 188 (264)
.+.+++|+||||||||||++.|+...| .+.....++||.++.++..|.+|+|++...|..+...+.|++++.+.++.||
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA-EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYG 84 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS-SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC-CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeeccccc
Confidence 468999999999999999999999887 4667788999999888899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHHH
Q psy14166 189 TSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESR 240 (264)
Q Consensus 189 t~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~r 240 (264)
++.+.+.++++.|+++|+|++++++..++.....+.+||+.+|+.+++.++.
T Consensus 85 ~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl 136 (205)
T 3tr0_A 85 TEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERL 136 (205)
T ss_dssp EEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHH
T ss_pred chHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHH
Confidence 9999999999999999999999999999988888999999999998887743
No 16
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.83 E-value=1.8e-20 Score=162.82 Aligned_cols=130 Identities=28% Similarity=0.490 Sum_probs=111.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHH-hcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCcee
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLI-ALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLY 187 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~-~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~Y 187 (264)
.+.+++|+||+|||||||++.|+ ...|. +...+++|||+|+.++.+|.+|+|++...|..+...+.|++++.+.++.|
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKNN-IVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGNFY 104 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC----C-EEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCCC-cccccccCCCCCCccccCCCeEEEecHHHhhhhhhcCceehhhhhccccC
Confidence 46899999999999999999999 88775 67788999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCC-CCcEEEEEeCCChHHHHHH
Q psy14166 188 GTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPA-FKPLVLFIAPPPFAALKES 239 (264)
Q Consensus 188 Gt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~-~~p~vIfI~pps~e~l~~~ 239 (264)
|++.+.+.++++.|++||+++++++...++... ..+.+|||.+|+.+.+.++
T Consensus 105 ~~~~~~i~~~~~~~~~vild~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~R 157 (231)
T 3lnc_A 105 GVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPPSMEELRRR 157 (231)
T ss_dssp EEECTTHHHHHHHTCEEEEECCHHHHHHHHHHSGGGEEEEEEECSCHHHHHHC
T ss_pred CCCHHHHHHHHHcCCeEEEEcCHHHHHHHHHhcCCCeEEEEEECCcHHHHHHH
Confidence 999989999999999999999999998887654 4678999999999888774
No 17
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=99.82 E-value=2.6e-21 Score=178.94 Aligned_cols=133 Identities=20% Similarity=0.315 Sum_probs=95.0
Q ss_pred CCCcchHhhhhcCCCCCCCCeEEEEcCCCCCHHH---HHHHHHhcCCCCccccccccCCCCCCCCCCCcce--eecCHHH
Q psy14166 92 EEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSE---LKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEY--HFVSHET 166 (264)
Q Consensus 92 ~~~~~Yeev~~~~~~~~~~r~ivLiGpsGvGKsT---L~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY--~fvs~~~ 166 (264)
+.+++||+|..+ |+|||+||+++|-.+ +-+.|+...+.+|+..|++| |.+...+..+..+ +++++..
T Consensus 131 ~~~~~Ye~vp~~-------RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~t-R~~~d~~~~~r~~~~~~~~~~~ 202 (337)
T 4dey_A 131 EHTPPYDVVPSM-------RPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT-RVTADISLAKRSVLNNPSKHAI 202 (337)
T ss_dssp --CCSEEEECSS-------CCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEE-EECSCGGGC-------------
T ss_pred CCCCCccccCCC-------CceEEECCccccchhHHHHHHHHHHhhHHhcCCccceE-eecchhhhcchhhhhcccchhh
Confidence 567899999533 789999999999875 45667777777787888654 7777666666553 5778888
Q ss_pred HHHHHHcCCcceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHH-HHHHHhcCCCCcEEEEEeCCChHHHHHHH
Q psy14166 167 MTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQ-SLKVLRSPAFKPLVLFIAPPPFAALKESR 240 (264)
Q Consensus 167 f~~~i~~~~flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~-~~~~Lr~~~~~p~vIfI~pps~e~l~~~r 240 (264)
|+..+..+.|+| +++..+.|.++.++|++||||++++ |+++|+...+.|++|||.|||+++|+++.
T Consensus 203 ~e~~~~~~~~~e--------v~seVe~i~~v~~~Gk~vILDIDvQnGa~qlk~~~~~~i~IFI~PPS~eeLe~RL 269 (337)
T 4dey_A 203 IERSNTRSSLAE--------VQSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIVVYVKISSPKVLQRLI 269 (337)
T ss_dssp ------CCCHHH--------HHHHHHHHHHHTTTCCEEEEEETTCCSGGGTTTSSCCCEEEEECCSCHHHHHHHH
T ss_pred hcccccccchHH--------HHhHHHHHHHHHhCCCEEEEEeCcHHHHHHHHhcCCCCEEEEEECcCHHHHHHHH
Confidence 888888888776 4566788888888999999999998 99999999999999999999999999863
No 18
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.81 E-value=5.3e-19 Score=153.45 Aligned_cols=131 Identities=25% Similarity=0.485 Sum_probs=118.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG 188 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG 188 (264)
.+++++|+||||||||||++.|+...|..+...+++||++++.++.++++|.|++...|..+..++.|++++.+.++.||
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g 101 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYG 101 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhcccccCC
Confidence 46899999999999999999999988734445678899998888889999999999999999889999999999999999
Q ss_pred CCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCC--CCcEEEEEeCCChHHHHHH
Q psy14166 189 TSSDSVLELVNSGRVAVLNPAYQSLKVLRSPA--FKPLVLFIAPPPFAALKES 239 (264)
Q Consensus 189 t~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~--~~p~vIfI~pps~e~l~~~ 239 (264)
++.+.+.++++.+++++++.++.+.+++|..- ..|..|||.+|++..|.+.
T Consensus 102 ~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~ 154 (218)
T 1z6g_A 102 TLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSR 154 (218)
T ss_dssp EEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHH
T ss_pred CcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHH
Confidence 99889999999999999999999999999765 5779999999999888764
No 19
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.79 E-value=1e-18 Score=147.67 Aligned_cols=131 Identities=31% Similarity=0.564 Sum_probs=109.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG 188 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG 188 (264)
.+.+|+|+||||||||||++.|.......++..+.+++|.+..++.++.+|.|.+.+.|..++.++.++++..+.+++||
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 84 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYG 84 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeecC
Confidence 45899999999999999999999987223555678899998888888999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166 189 TSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKES 239 (264)
Q Consensus 189 t~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~ 239 (264)
.+.+.+.++++.|+.+|+|+.+.+...++.....+++||+.||+.+.+.++
T Consensus 85 ~~~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~R 135 (207)
T 2j41_A 85 TPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHLRER 135 (207)
T ss_dssp EEHHHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECCC-------
T ss_pred CCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCeEEEEEECCCHHHHHHH
Confidence 999999999999999999999887777775444789999999887777653
No 20
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.64 E-value=3.9e-15 Score=127.31 Aligned_cols=130 Identities=31% Similarity=0.556 Sum_probs=112.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecC--ce
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKG--HL 186 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g--~~ 186 (264)
.+.+++|+||||||||||++.|+...+. +...+.+++++++.++..|++|.|++...|..+...+.|+++..+.+ ++
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~~-i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~ 97 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIPN-LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHR 97 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHSTT-CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc-eEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchhh
Confidence 5699999999999999999999998874 33457888988877788899999999999998888888999888888 78
Q ss_pred ecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166 187 YGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKES 239 (264)
Q Consensus 187 YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~ 239 (264)
||++.+.+++.++++..++++++..++..++......+.+++..|+...|.+.
T Consensus 98 ~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep 150 (207)
T 1znw_A 98 SGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQAR 150 (207)
T ss_dssp EEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHH
T ss_pred cCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHH
Confidence 99999889999999999999999988888877667778899998888777653
No 21
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=99.22 E-value=6.7e-12 Score=116.43 Aligned_cols=120 Identities=18% Similarity=0.234 Sum_probs=85.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC--------CccccccccCCCCCCCCCCCcceeecCHHHH-HHHHHcCCccee
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD--------KFTQVTPYTTRPKKPGEEDGKEYHFVSHETM-TSLISAGKMIEF 179 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~--------~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f-~~~i~~~~flE~ 179 (264)
++++|+|+||+|||||||+..|++..+. .+...++++|++|+..|.+|++|||++..++ .+.+..+.|.+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~ 118 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSL 118 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHH
Confidence 4579999999999999999999998762 1223467899999999999999999987766 444444455443
Q ss_pred eeecCceecCCHHHHHHHHHcCCeEEEEcCH-HHHHHHhcC----------------------CCCcEEEEEeCCChHHH
Q psy14166 180 GEYKGHLYGTSSDSVLELVNSGRVAVLNPAY-QSLKVLRSP----------------------AFKPLVLFIAPPPFAAL 236 (264)
Q Consensus 180 ~~~~g~~YGt~~~si~~vl~~Gki~vld~~~-~~~~~Lr~~----------------------~~~p~vIfI~pps~e~l 236 (264)
. .+.|.++.+.|+++|+.+-. -.++.+... .+...+|+|.+ +.++|
T Consensus 119 a----------~~~i~~i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~-~re~L 187 (339)
T 3a8t_A 119 A----------GKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDV-SVKVL 187 (339)
T ss_dssp H----------HHHHHHHHHTTCEEEEECCCHHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEEC-CHHHH
T ss_pred H----------HHHHHHHHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeC-CHHHH
Confidence 3 46777888899998887553 344444321 12345667766 58888
Q ss_pred HHH
Q psy14166 237 KES 239 (264)
Q Consensus 237 ~~~ 239 (264)
.++
T Consensus 188 ~~R 190 (339)
T 3a8t_A 188 TDY 190 (339)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 22
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=99.21 E-value=1.3e-12 Score=120.37 Aligned_cols=98 Identities=16% Similarity=0.217 Sum_probs=78.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCC--------ccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeee
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDK--------FTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGE 181 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~--------f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~ 181 (264)
+++|+|+||+|||||||+..|++.++.. +-..++.||++|+.+|.+|++|||++..+|.+.+..+.|.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~--- 79 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQD--- 79 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHH---
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHH---
Confidence 4689999999999999999999987631 12357789999999999999999999888876655555544
Q ss_pred ecCceecCCHHHHHHHHHcCCeEEEEcC-HHHHHHHh
Q psy14166 182 YKGHLYGTSSDSVLELVNSGRVAVLNPA-YQSLKVLR 217 (264)
Q Consensus 182 ~~g~~YGt~~~si~~vl~~Gki~vld~~-~~~~~~Lr 217 (264)
.....|.++.+.|+++||.+- .-.++.|-
T Consensus 80 -------~a~~~i~~i~~~gk~pIlVGGTglYi~aLl 109 (322)
T 3exa_A 80 -------LATPLITEIHERGRLPFLVGGTGLYVNAVI 109 (322)
T ss_dssp -------HHHHHHHHHHHTTCEEEEESCCHHHHHHHH
T ss_pred -------HHHHHHHHHHhCCCcEEEEcCcHHHHHHHH
Confidence 346889999999999988854 44566554
No 23
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=99.19 E-value=2e-12 Score=122.63 Aligned_cols=89 Identities=17% Similarity=0.279 Sum_probs=76.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCC--------ccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeee
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDK--------FTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEY 182 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~--------f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~ 182 (264)
++|+|+||||||||||+..|++.++.. +-..+++||++|+.+|.+|++|||++..+|.+++..+.|+++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a-- 80 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETEC-- 80 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHH--
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHH--
Confidence 689999999999999999999876531 2223678999999999999999999999898888888888875
Q ss_pred cCceecCCHHHHHHHHHcCCeEEEEcC
Q psy14166 183 KGHLYGTSSDSVLELVNSGRVAVLNPA 209 (264)
Q Consensus 183 ~g~~YGt~~~si~~vl~~Gki~vld~~ 209 (264)
...|.++.+.|+++||.+-
T Consensus 81 --------~~~i~~i~~~g~~pilVGG 99 (409)
T 3eph_A 81 --------MNAIEDIHRRGKIPIVVGG 99 (409)
T ss_dssp --------HHHHHHHHTTTCEEEEECS
T ss_pred --------HHHHHHHHhcCCCEEEECC
Confidence 6788999999999988754
No 24
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=99.16 E-value=1.7e-12 Score=119.33 Aligned_cols=98 Identities=16% Similarity=0.217 Sum_probs=76.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCC--------CccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeee
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPD--------KFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGE 181 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~--------~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~ 181 (264)
+++|+|+||+|||||||+..|++..+. .+...+++||++|+.+|.+|++|||++..++.+.+..+.|.+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~--- 86 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRR--- 86 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHH---
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHH---
Confidence 468999999999999999999998763 122346789999999999999999999888866555555543
Q ss_pred ecCceecCCHHHHHHHHHcCCeEEEEcC-HHHHHHHh
Q psy14166 182 YKGHLYGTSSDSVLELVNSGRVAVLNPA-YQSLKVLR 217 (264)
Q Consensus 182 ~~g~~YGt~~~si~~vl~~Gki~vld~~-~~~~~~Lr 217 (264)
.....|+++.+.|+++||.+- .-.++.|-
T Consensus 87 -------~a~~~i~~i~~~g~~pilVGGTglYi~all 116 (316)
T 3foz_A 87 -------DALAEMADITAAGRIPLLVGGTMLYFKALL 116 (316)
T ss_dssp -------HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred -------HHHHHHHHHHhCCCcEEEEcCcHHHHHHHH
Confidence 345788999999999887744 44556554
No 25
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.04 E-value=1.1e-10 Score=103.35 Aligned_cols=117 Identities=12% Similarity=0.089 Sum_probs=74.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCcc--------ccccccCCCCCCCCCCCcceeecCHHHHHH-HHHcCCcceeee
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFT--------QVTPYTTRPKKPGEEDGKEYHFVSHETMTS-LISAGKMIEFGE 181 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~--------~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~-~i~~~~flE~~~ 181 (264)
++|+|+||+|||||||++.|++..+..+- ....++|++|...|..|..|+|++...+.+ .+....|
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f----- 76 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESA----- 76 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHH-----
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHH-----
Confidence 47899999999999999999986432111 112467888887888999999987543321 0000111
Q ss_pred ecCceecCCHHHHHHHHHcCCeEEEEcCH-HHHHHH-hc----CCCCcEEEEEeCCChHHHHH
Q psy14166 182 YKGHLYGTSSDSVLELVNSGRVAVLNPAY-QSLKVL-RS----PAFKPLVLFIAPPPFAALKE 238 (264)
Q Consensus 182 ~~g~~YGt~~~si~~vl~~Gki~vld~~~-~~~~~L-r~----~~~~p~vIfI~pps~e~l~~ 238 (264)
.......+ ++++.|+.+|++... ..++.+ +. ..+...+|||.+|..+.+.+
T Consensus 77 -----~~~~~~~i-~~~~~g~~vIl~gg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~ 133 (253)
T 2ze6_A 77 -----HRRLIFEV-DWRKSEEGLILEGGSISLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLT 133 (253)
T ss_dssp -----HHHHHHHH-HTTTTSSEEEEEECCHHHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHH
T ss_pred -----HHHHHHHH-HHHhCCCCeEEeccHHHHHHHHHhcccccccCceEEEEecchhHHHHHH
Confidence 11123445 556788888887653 333333 33 44566899999998556544
No 26
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.94 E-value=6.3e-10 Score=100.34 Aligned_cols=109 Identities=13% Similarity=0.188 Sum_probs=69.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccc-cCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceee-eecCce
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPY-TTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFG-EYKGHL 186 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~-TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~-~~~g~~ 186 (264)
.+.+|+|+||||||||||++.|+...+..+ ..|+. ++|.+..+ |..++.. |.++. ++.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~-~~Is~D~~R~~~~~--------------~~~~~~~--~~~~a~~~~~~~ 94 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNV-IVIDNDTFKQQHPN--------------FDELVKL--YEKDVVKHVTPY 94 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCC-EEECTHHHHTTSTT--------------HHHHHHH--HGGGCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCe-EEEechHhHHhchh--------------hHHHHHH--ccchhhhhhhHH
Confidence 467999999999999999999998765322 33333 55654332 2222221 44433 344678
Q ss_pred ecCC-HHHHHHHHHcCCeEEEEcCHHH-------HHHHhcCCCCcEE-EEEeCCChH
Q psy14166 187 YGTS-SDSVLELVNSGRVAVLNPAYQS-------LKVLRSPAFKPLV-LFIAPPPFA 234 (264)
Q Consensus 187 YGt~-~~si~~vl~~Gki~vld~~~~~-------~~~Lr~~~~~p~v-IfI~pps~e 234 (264)
||+. ...+...+++|+.+|+|++..+ .+.++..++...+ +|+.||+..
T Consensus 95 ~~~~~~~~v~~~l~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~ 151 (287)
T 1gvn_B 95 SNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINS 151 (287)
T ss_dssp HHHHHHHHHHHHHHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHH
Confidence 8874 4677888899999999998643 2334555555444 444555544
No 27
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.79 E-value=2.9e-10 Score=104.90 Aligned_cols=89 Identities=15% Similarity=0.169 Sum_probs=64.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCcc--------ccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeee
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFT--------QVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEY 182 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~--------~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~ 182 (264)
++|+|+||+|||||||+..|++..+..+- ...+++|++|+..|.+|+.|||++..++......+.|++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a-- 83 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADA-- 83 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHH--
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHH--
Confidence 58999999999999999999987652111 12467899999999999999999866554333333343322
Q ss_pred cCceecCCHHHHHHHHHcCCeEEEEcC
Q psy14166 183 KGHLYGTSSDSVLELVNSGRVAVLNPA 209 (264)
Q Consensus 183 ~g~~YGt~~~si~~vl~~Gki~vld~~ 209 (264)
...+.++.+.|+++|+.+-
T Consensus 84 --------~~~i~~i~~~g~~~IlvGG 102 (323)
T 3crm_A 84 --------LAAMAKATARGRIPLLVGG 102 (323)
T ss_dssp --------HHHHHHHHHTTCEEEEEES
T ss_pred --------HHHHHHHHHcCCeEEEECC
Confidence 4667778888888777654
No 28
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.74 E-value=2.6e-08 Score=81.72 Aligned_cols=115 Identities=19% Similarity=0.249 Sum_probs=63.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCccc-ccc--ccCCCCCCC-CCCCcceeecCHHHHHHHHHcCCcceeeeecCc
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQ-VTP--YTTRPKKPG-EEDGKEYHFVSHETMTSLISAGKMIEFGEYKGH 185 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~-~v~--~TTR~~r~g-E~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~ 185 (264)
+.+|+|+|+|||||||+++.|++..+..|.. .+- +.+++++.+ +.+|.+|. + .+.+.. ......
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~-~~~~~~ 70 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFD--A---------DGGVSI-GPEFRA 70 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEEC--T---------TSCEEE-CHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhcccc--C---------CCcccc-chhHHH
Confidence 3689999999999999999999986533311 111 113443321 22344432 0 000000 000112
Q ss_pred eecCCHHHHHHHHHcCCeEEEEcCH----H----HHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166 186 LYGTSSDSVLELVNSGRVAVLNPAY----Q----SLKVLRSPAFKPLVLFIAPPPFAALKES 239 (264)
Q Consensus 186 ~YGt~~~si~~vl~~Gki~vld~~~----~----~~~~Lr~~~~~p~vIfI~pps~e~l~~~ 239 (264)
.|+.....+...++.|..+|+++.. . ..+.+ ......+||+.+| ++++.++
T Consensus 71 ~~~~~~~~~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~v~l~~~-~e~l~~R 129 (178)
T 1qhx_A 71 LEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFV--GDLDVLWVGVRCD-GAVAEGR 129 (178)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECCTTTHHHHHHHHHHH--TTCCEEEEEEECC-HHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeccccChHHHHHHHHHh--cCCcEEEEEEECC-HHHHHHH
Confidence 3444445567778889989999853 1 22333 2233468889975 7777664
No 29
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.68 E-value=1.2e-08 Score=94.72 Aligned_cols=105 Identities=14% Similarity=0.159 Sum_probs=70.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCC------Cc--cccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeee
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPD------KF--TQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEY 182 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~------~f--~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~ 182 (264)
++|+|+||+|||||||+..|++..+. .+ -..+.++|++|...|..|..||+++..++...+....|.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~---- 83 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKK---- 83 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHH----
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHH----
Confidence 58999999999999999999987651 11 2345678999999999999999987655433222222222
Q ss_pred cCceecCCHHHHHHHHHcCCeEEEEc-CHHHHHHHhcCCCCcEEEEEe
Q psy14166 183 KGHLYGTSSDSVLELVNSGRVAVLNP-AYQSLKVLRSPAFKPLVLFIA 229 (264)
Q Consensus 183 ~g~~YGt~~~si~~vl~~Gki~vld~-~~~~~~~Lr~~~~~p~vIfI~ 229 (264)
.....+.+++..|+++|+.. ..-.++.|.. ++. +|+.
T Consensus 84 ------~a~~~i~~i~~~g~~~IlvGGt~ly~~~l~~-~l~---~~~~ 121 (340)
T 3d3q_A 84 ------RAEKYIKDITRRGKVPIIAGGTGLYIQSLLY-NYA---FEDE 121 (340)
T ss_dssp ------HHHHHHHHHHHTTCEEEEECCCHHHHHHHHB-CSC---CC--
T ss_pred ------HHHHHHHHHHhCCCcEEEECChhhhHHHHHh-ccc---ccCC
Confidence 22456677777888876654 4445566664 232 5655
No 30
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.53 E-value=9.3e-08 Score=79.09 Aligned_cols=107 Identities=12% Similarity=0.171 Sum_probs=60.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcC-Cc--ceee-eecC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAG-KM--IEFG-EYKG 184 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~-~f--lE~~-~~~g 184 (264)
.+.+|+|+|++||||||+++.|++.... .+++.+.+...+..+ .. .++. ....
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~-----------------------~~i~~D~~~~~~~~~~~~~~~~~~~~~~~ 60 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRL-----------------------PLLSKDAFKEVMFDGLGWSDREWSRRVGA 60 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTC-----------------------CEEEHHHHHHHHHHHHCCCSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCC-----------------------eEecHHHHHHHHHHhcCccchHHHHHhhH
Confidence 3579999999999999999999876321 122222332221110 00 0000 0011
Q ss_pred ceecCCHHHHHHHHHcCCeEEEEcCHH------HHHHHhcCCCCc-EEEEEeCCChHHHHHH
Q psy14166 185 HLYGTSSDSVLELVNSGRVAVLNPAYQ------SLKVLRSPAFKP-LVLFIAPPPFAALKES 239 (264)
Q Consensus 185 ~~YGt~~~si~~vl~~Gki~vld~~~~------~~~~Lr~~~~~p-~vIfI~pps~e~l~~~ 239 (264)
..|....+.+..+++.|..+|+|.... .+..|......| .+||+++| .+++.++
T Consensus 61 ~~~~~~~~~~~~~l~~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~-~e~~~~R 121 (193)
T 2rhm_A 61 TAIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVAS-GDVLVER 121 (193)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECC-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHH
Confidence 123333445667788999999998762 122244433344 68999986 5666543
No 31
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.52 E-value=4.6e-08 Score=85.23 Aligned_cols=117 Identities=14% Similarity=0.207 Sum_probs=65.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcc-eeee---ecC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMI-EFGE---YKG 184 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~fl-E~~~---~~g 184 (264)
.+.+|+|.||+||||||+++.|.+.... +..+ .+|+.|...+. .+.+...+.++..+ ...+ +..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~-~~~~~p~~~~~---------g~~i~~~~~~~~~~~~~~~~ll~~a 92 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK--DYDV-IMTREPGGVPT---------GEEIRKIVLEGNDMDIRTEAMLFAA 92 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCE-EEECTTTTCHH---------HHHHHHHTTC---CCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCc-eeecCCCCCch---------HHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 5689999999999999999999998653 2333 35566543211 13344444443321 1000 011
Q ss_pred ceecCCHHHHHHHHHcCCeEEEE----------c-----CHHHHHHHh---cCCCCc-EEEEEeCCChHHHHH
Q psy14166 185 HLYGTSSDSVLELVNSGRVAVLN----------P-----AYQSLKVLR---SPAFKP-LVLFIAPPPFAALKE 238 (264)
Q Consensus 185 ~~YGt~~~si~~vl~~Gki~vld----------~-----~~~~~~~Lr---~~~~~p-~vIfI~pps~e~l~~ 238 (264)
+.+....+.|...+++|+++|+| + +...+..|. ...+.| .+||++.| .+.+.+
T Consensus 93 ~r~~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~-~e~~~~ 164 (229)
T 4eaq_A 93 SRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVS-AEVGRE 164 (229)
T ss_dssp HHHHHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHH
Confidence 11111112345677899999999 3 444333333 233444 58899987 455554
No 32
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.52 E-value=5.5e-07 Score=74.05 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+.+|+|+|++||||||+++.|++..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999864
No 33
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.50 E-value=1.1e-07 Score=77.67 Aligned_cols=103 Identities=18% Similarity=0.273 Sum_probs=58.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcC------CcceeeeecC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAG------KMIEFGEYKG 184 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~------~flE~~~~~g 184 (264)
.+|+|+|++||||||+++.|.+.... +.+++.+.+...+... .|...+ ..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~----------------------~~~i~~d~~r~~~~~~~~~~~~~~~~~~--~~ 58 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPG----------------------FYNINRDDYRQSIMAHEERDEYKYTKKK--EG 58 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTT----------------------EEEECHHHHHHHHTTSCCGGGCCCCHHH--HH
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCC----------------------cEEecHHHHHHHhhCCCccchhhhchhh--hh
Confidence 58999999999999999999873111 1223333333322111 010000 01
Q ss_pred ceecCCHHHHHHHH---HcCCeEEEEcCHH---HHHHHh----cCCCCcEEEEEeCCChHHHHH
Q psy14166 185 HLYGTSSDSVLELV---NSGRVAVLNPAYQ---SLKVLR----SPAFKPLVLFIAPPPFAALKE 238 (264)
Q Consensus 185 ~~YGt~~~si~~vl---~~Gki~vld~~~~---~~~~Lr----~~~~~p~vIfI~pps~e~l~~ 238 (264)
..+....+.+...+ +.|+.+|+|..+. ....++ ..+....+|||.+| .+++.+
T Consensus 59 ~~~~~~~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~-~~~~~~ 121 (181)
T 1ly1_A 59 IVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVP-WTELVK 121 (181)
T ss_dssp HHHHHHHHHHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCC-HHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCC-HHHHHH
Confidence 12233345567777 7899999987642 222232 33445579999975 566654
No 34
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.49 E-value=1.9e-08 Score=88.21 Aligned_cols=131 Identities=15% Similarity=0.113 Sum_probs=70.1
Q ss_pred chHhhhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCc---cccccccCCCCCCCCCCCcceeecCHHHHHHHHH
Q psy14166 96 TYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKF---TQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLIS 172 (264)
Q Consensus 96 ~Yeev~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f---~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~ 172 (264)
+.|.....+-...++.+|+|.|++||||||+++.|.+.....+ +..+ .+||.|...+ . -+.+.+.+.
T Consensus 11 ~~~~~~~~~~~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v-~~~rep~~t~-----~----g~~ir~~l~ 80 (227)
T 3v9p_A 11 TLEAQTQGPGSMARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHV-VVTREPGGTR-----L----GETLREILL 80 (227)
T ss_dssp ------------CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCE-EEEESSSSSH-----H----HHHHHHHHH
T ss_pred hHHHHHhcCccccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceee-eeecCCCCCh-----H----HHHHHHHHH
Confidence 3444444344444678999999999999999999998764321 3333 4788874221 1 134566555
Q ss_pred cCCcceee---eecCceecCCHHHHHHHHHcCCeEEEEcCH---------------HHHHHHh---cCCCCc-EEEEEeC
Q psy14166 173 AGKMIEFG---EYKGHLYGTSSDSVLELVNSGRVAVLNPAY---------------QSLKVLR---SPAFKP-LVLFIAP 230 (264)
Q Consensus 173 ~~~flE~~---~~~g~~YGt~~~si~~vl~~Gki~vld~~~---------------~~~~~Lr---~~~~~p-~vIfI~p 230 (264)
++.+-.+. -|..+.|....+.|+..+++|+++|+|=-. +.+..|. ...+.| .+||++.
T Consensus 81 ~~~~~~~~~~llf~a~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv 160 (227)
T 3v9p_A 81 NQPMDLETEALLMFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDV 160 (227)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEEC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeC
Confidence 55422111 133444554445677888999999999432 2233332 123455 5899998
Q ss_pred CChHHHH
Q psy14166 231 PPFAALK 237 (264)
Q Consensus 231 ps~e~l~ 237 (264)
|. +++.
T Consensus 161 ~~-e~~~ 166 (227)
T 3v9p_A 161 PP-QIAS 166 (227)
T ss_dssp CS-SCGG
T ss_pred CH-HHHH
Confidence 73 4443
No 35
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.48 E-value=3.9e-07 Score=86.05 Aligned_cols=90 Identities=13% Similarity=0.232 Sum_probs=62.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG 188 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG 188 (264)
.+.+|+|+|+|||||||+++.|++... |.+++.+.+ ..|+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~-----------------------~~~i~~D~~-----------------~~~~ 296 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAG-----------------------YVHVNRDTL-----------------GSWQ 296 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGT-----------------------CEECCGGGS-----------------CSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcC-----------------------cEEEccchH-----------------HHHH
Confidence 568999999999999999999987531 334443332 1244
Q ss_pred CCHHHHHHHHHcCCeEEEEcCH-------HHHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166 189 TSSDSVLELVNSGRVAVLNPAY-------QSLKVLRSPAFKPLVLFIAPPPFAALKES 239 (264)
Q Consensus 189 t~~~si~~vl~~Gki~vld~~~-------~~~~~Lr~~~~~p~vIfI~pps~e~l~~~ 239 (264)
...+.+...+.+|..+|+|... ..+..++..+....+||+.+| .+++.++
T Consensus 297 ~~~~~~~~~l~~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~-~e~l~~R 353 (416)
T 3zvl_A 297 RCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCAT-IEQARHN 353 (416)
T ss_dssp HHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCC-HHHHHHH
T ss_pred HHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCC-HHHHHHH
Confidence 4566778888999999999662 223444555667788999775 6666543
No 36
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.45 E-value=1e-07 Score=79.61 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
++.+|+|+|++||||||+++.|++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999876
No 37
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.43 E-value=5.7e-07 Score=74.43 Aligned_cols=117 Identities=10% Similarity=0.196 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCC-CCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCcee
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRP-KKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLY 187 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~-~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~Y 187 (264)
++.+|+|+|++||||||+++.|++.....+ .......|. +.. |..+ ...+...+.+|.++.. ...+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~-i~~d~~~~~~~~~----~~~~----~~~i~~~~~~g~~~~~----~~~~ 74 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTH-LSTGDLLRSEVSS----GSAR----GKKLSEIMEKGQLVPL----ETVL 74 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEE-EEHHHHHHHHHHT----TCHH----HHHHHHHHHTTCCCCH----HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeE-EcHHHHHHHHHHc----CChH----HHHHHHHHHcCCcCCH----HHHH
Confidence 347999999999999999999997643211 111111111 001 1111 1233333444544322 1122
Q ss_pred cCCHHHHHHHHHcCCeEEEEcCHHH---HHHHhcCCCC-cEEEEEeCCChHHHHHH
Q psy14166 188 GTSSDSVLELVNSGRVAVLNPAYQS---LKVLRSPAFK-PLVLFIAPPPFAALKES 239 (264)
Q Consensus 188 Gt~~~si~~vl~~Gki~vld~~~~~---~~~Lr~~~~~-p~vIfI~pps~e~l~~~ 239 (264)
....+.+...++.|..+|+|+.+.. ++.+...... ..+|||.+| .+.+.++
T Consensus 75 ~~~~~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~-~e~~~~R 129 (196)
T 2c95_A 75 DMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAG-PETMTQR 129 (196)
T ss_dssp HHHHHHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECC-HHHHHHH
T ss_pred HHHHHHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECC-HHHHHHH
Confidence 3333455555668899999975433 3333221122 379999987 5555543
No 38
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.41 E-value=6e-07 Score=75.42 Aligned_cols=106 Identities=20% Similarity=0.217 Sum_probs=59.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGT 189 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt 189 (264)
.++|+|+|++|||||||++.|++.....+ + ++.++. .......+ ..+....... ...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~---i------------~~d~~~--~~~~~~~~-~~g~~~~~~~-----~~~ 74 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPF---I------------EGDALH--PPENIRKM-SEGIPLTDDD-----RWP 74 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCE---E------------EGGGGC--CHHHHHHH-HHTCCCCHHH-----HHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEE---E------------eCCcCc--chhhHHHH-hcCCCCCchh-----hHH
Confidence 46899999999999999999988742111 0 111111 11111111 1222111100 001
Q ss_pred CHHHHHHHHHcCCeEEEEcC---HHHHHHHhcCCCC-cEEEEEeCCChHHHHHH
Q psy14166 190 SSDSVLELVNSGRVAVLNPA---YQSLKVLRSPAFK-PLVLFIAPPPFAALKES 239 (264)
Q Consensus 190 ~~~si~~vl~~Gki~vld~~---~~~~~~Lr~~~~~-p~vIfI~pps~e~l~~~ 239 (264)
....+.+.+..|..+|+|+. ......++..... ..+|||.+| .+++.++
T Consensus 75 ~~~~l~~~~~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~-~e~~~~R 127 (202)
T 3t61_A 75 WLAAIGERLASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGS-ESVLAER 127 (202)
T ss_dssp HHHHHHHHHTSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECC-HHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCC-HHHHHHH
Confidence 13455666678888999965 4556666643323 478999987 5565543
No 39
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.40 E-value=4.1e-07 Score=75.04 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.|+|+||+||||||+++.|++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998763
No 40
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.37 E-value=2.3e-07 Score=81.16 Aligned_cols=114 Identities=16% Similarity=0.143 Sum_probs=68.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG 188 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG 188 (264)
.+..|+|+||+||||||+++.|++.+. .....+.++.|.... .|..+ -..+...+.+|.+++....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g-~~~is~~~~~r~~~~---~~~~~----g~~i~~~~~~g~~~~~~~~------ 93 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC-YCHLSTGDLLREAAE---KKTEL----GLKIKNIINEGKLVDDQMV------ 93 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC-CEEEEHHHHHHHHTT---SSSHH----HHHHHHHHHTTCCCCHHHH------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC-CeEEecHHHHHHHHh---ccchH----HHHHHHHHhcCCCCcHHHH------
Confidence 457899999999999999999998753 233344455555221 11111 2356666777877664321
Q ss_pred CCHHHHHHHHHc---CCeEEEEcCHHHHHHHh-------cCCCCc-EEEEEeCCChHHHHHH
Q psy14166 189 TSSDSVLELVNS---GRVAVLNPAYQSLKVLR-------SPAFKP-LVLFIAPPPFAALKES 239 (264)
Q Consensus 189 t~~~si~~vl~~---Gki~vld~~~~~~~~Lr-------~~~~~p-~vIfI~pps~e~l~~~ 239 (264)
...+...+.. ++.+|+|+.|..+.+.. ..+..| .+|++..|. +++.++
T Consensus 94 --~~~~~~~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~-e~~~~R 152 (243)
T 3tlx_A 94 --LSLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPD-EVLVNR 152 (243)
T ss_dssp --HHHHHHHTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCH-HHHHHH
T ss_pred --HHHHHHHHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCH-HHHHHH
Confidence 2233444433 77899998765443322 233444 688888874 555543
No 41
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.37 E-value=1.2e-06 Score=71.73 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+|+|+||+|||||||++.|....
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 46899999999999999999998763
No 42
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.37 E-value=1.2e-06 Score=73.82 Aligned_cols=111 Identities=16% Similarity=0.196 Sum_probs=58.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG 188 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG 188 (264)
.+.+|+|+||+|||||||++.|++.... .. ++|.++. ....... ...+...+...... .+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~----~~-----------i~~d~~~--~~~~~~~-~~~g~~~~~~~~~~-~~~ 88 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGL----EF-----------AEADAFH--SPENIAT-MQRGIPLTDEDRWP-WLR 88 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCC----EE-----------EEGGGGS--CHHHHHH-HHTTCCCCHHHHHH-HHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCC----eE-----------Ecccccc--cHHHHHH-HhcCCCCCCccccc-HHH
Confidence 4589999999999999999999876421 11 1111111 0000111 11111111000000 011
Q ss_pred CCHHHHHHHHHcCCeEEEEcC---HHHHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166 189 TSSDSVLELVNSGRVAVLNPA---YQSLKVLRSPAFKPLVLFIAPPPFAALKES 239 (264)
Q Consensus 189 t~~~si~~vl~~Gki~vld~~---~~~~~~Lr~~~~~p~vIfI~pps~e~l~~~ 239 (264)
.....+...+..|..+|++.. ......++.......+|||.+| .+++.++
T Consensus 89 ~~~~~~~~~~~~g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~~~-~e~l~~R 141 (200)
T 4eun_A 89 SLAEWMDARADAGVSTIITCSALKRTYRDVLREGPPSVDFLHLDGP-AEVIKGR 141 (200)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCCHHHHHHHTTSSSCCEEEEEECC-HHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEchhhhHHHHHHHHHhCCceEEEEEeCC-HHHHHHH
Confidence 112233445567888888874 3455566554445678999987 6666553
No 43
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.32 E-value=4.4e-07 Score=79.88 Aligned_cols=119 Identities=16% Similarity=0.128 Sum_probs=69.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcC----Ccc---eeee
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAG----KMI---EFGE 181 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~----~fl---E~~~ 181 (264)
++.+|+|.|++||||||+++.|.+.... .+..+..+||.|... .+ -+.+...+..+ .+- |..-
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~rep~~t-----~~----g~~ir~~l~~~~~~~~~~~~~e~lL 95 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRTREPGGT-----LL----AEKLRALVKEEHPGEELQDITELLL 95 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSS-----HH----HHHHHHHHHSCCTTSCCCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeeecCCCCC-----HH----HHHHHHHHhhCCCcccCCHHHHHHH
Confidence 5689999999999999999999887542 233434678887421 11 23455554321 111 1111
Q ss_pred ecCceecCCHHHHHHHHHcCCeEEEEcCH---------------HHHHHHhc---CCCCc-EEEEEeCCChHHHHH
Q psy14166 182 YKGHLYGTSSDSVLELVNSGRVAVLNPAY---------------QSLKVLRS---PAFKP-LVLFIAPPPFAALKE 238 (264)
Q Consensus 182 ~~g~~YGt~~~si~~vl~~Gki~vld~~~---------------~~~~~Lr~---~~~~p-~vIfI~pps~e~l~~ 238 (264)
|..+.+....+.|+..+++|+++|+|=-. +.+..|.. ..+.| .+||++.| ++++.+
T Consensus 96 f~A~R~~~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~-~e~~~~ 170 (236)
T 3lv8_A 96 VYAARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDID-PKLGLE 170 (236)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHH
Confidence 22223333334567788899999999321 22233321 23455 68999987 555554
No 44
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.31 E-value=2e-07 Score=76.64 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++|+|+|++||||||+++.|++..+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999998754
No 45
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.29 E-value=6e-07 Score=78.77 Aligned_cols=112 Identities=17% Similarity=0.181 Sum_probs=59.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHHHcCCcceeeeecCce
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLISAGKMIEFGEYKGHL 186 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~ 186 (264)
.+..|+|+|+|||||||+++.|....+..+...-...-|...... +. .++.....+-++ +.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~-~~~g~~~~~~~~----------------~~ 93 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQ-QEYGKDSVEYTK----------------DF 93 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHH-TTCSSTTHHHHH----------------HH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHH-HHcCchHHHHhh----------------HH
Confidence 457899999999999999999998764211111111111110000 00 000000000010 00
Q ss_pred ecCC-HHHHHHHHHcCCeEEEEcCHH-------HHHHHhcCCCCcEEEEEeCCChHHHHH
Q psy14166 187 YGTS-SDSVLELVNSGRVAVLNPAYQ-------SLKVLRSPAFKPLVLFIAPPPFAALKE 238 (264)
Q Consensus 187 YGt~-~~si~~vl~~Gki~vld~~~~-------~~~~Lr~~~~~p~vIfI~pps~e~l~~ 238 (264)
.|.. ...+..+++.|..+|+|..+. ..+.++..+...++||+..| .+.+.+
T Consensus 94 ~~~~~~~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~-~e~~~~ 152 (253)
T 2p5t_B 94 AGKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATK-PELSYL 152 (253)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCC-HHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCC-HHHHHH
Confidence 1111 234455677888899998753 24556667777888899886 544433
No 46
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.29 E-value=1.9e-07 Score=77.39 Aligned_cols=114 Identities=12% Similarity=0.152 Sum_probs=57.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeee---ecCceec
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGE---YKGHLYG 188 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~---~~g~~YG 188 (264)
+|+|.|++||||||+++.|.+..+. .+..+ .+||.|... .+ .+.+...+..+.+....+ +..+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~-~g~~v-~~~~~~~~~-----~~----g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 70 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK-RGKKV-ILKREPGGT-----ET----GEKIRKILLEEEVTPKAELFLFLASRNL 70 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH-CCC-E-EEEESSCSS-----HH----HHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeE-EEeeCCCCC-----cH----HHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987421 12233 244554321 11 123444443343322211 1112222
Q ss_pred CCHHHHHHHHHcCCeEEEEc---------------CHHHHHHHh---cCCC-CcEEEEEeCCChHHHHH
Q psy14166 189 TSSDSVLELVNSGRVAVLNP---------------AYQSLKVLR---SPAF-KPLVLFIAPPPFAALKE 238 (264)
Q Consensus 189 t~~~si~~vl~~Gki~vld~---------------~~~~~~~Lr---~~~~-~p~vIfI~pps~e~l~~ 238 (264)
.... +...+.+|.++|+|- +.+.+..+. .... .-.+||+.+| .+.+.+
T Consensus 71 ~~~~-i~~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~-~e~~~~ 137 (197)
T 2z0h_A 71 LVTE-IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVD-VETALK 137 (197)
T ss_dssp HHHH-HTTC----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHH
T ss_pred HHHH-HHHHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCC-HHHHHH
Confidence 2223 555677899999982 333333332 1222 3468889887 455544
No 47
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.29 E-value=4.5e-07 Score=78.41 Aligned_cols=118 Identities=19% Similarity=0.150 Sum_probs=67.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCccee---ee---e
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEF---GE---Y 182 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~---~~---~ 182 (264)
++.+|+|.|++||||||+++.|.+..... +..+ .+||.|... .+ -+.+...+.++...+. .+ |
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v-~~~~~p~~~-----~~----g~~i~~~l~~~~~~~~~~~~~~llf 73 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRER-GIEV-QLTREPGGT-----PL----AERIRELLLAPSDEPMAADTELLLM 73 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCE-EEEESSCSS-----HH----HHHHHHHHHSCCSSCCCHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCc-ccccCCCCC-----HH----HHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 46899999999999999999998875432 2333 467877421 11 1345555554431111 10 1
Q ss_pred cCceecCCHHHHHHHHHcCCeEEEEcCH---------------HHHHHHhc---CCCCc-EEEEEeCCChHHHHH
Q psy14166 183 KGHLYGTSSDSVLELVNSGRVAVLNPAY---------------QSLKVLRS---PAFKP-LVLFIAPPPFAALKE 238 (264)
Q Consensus 183 ~g~~YGt~~~si~~vl~~Gki~vld~~~---------------~~~~~Lr~---~~~~p-~vIfI~pps~e~l~~ 238 (264)
..+.+..-.+.|+..+++|+++|+|=-. +.+..|.. ..+.| .+||++.| ++++.+
T Consensus 74 ~a~R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~-~e~~~~ 147 (213)
T 4edh_A 74 FAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLP-VEIGLA 147 (213)
T ss_dssp HHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHH
Confidence 1111222224466678899999998432 22222321 23455 58999987 666655
No 48
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.27 E-value=1.1e-06 Score=74.01 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
++.|+|+||+|||||||++.|++..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4799999999999999999999764
No 49
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.26 E-value=4.9e-06 Score=68.09 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=19.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++.+|+|+|++||||||+++.|++...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999987753
No 50
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.24 E-value=3e-07 Score=77.27 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
++.+|+|+|++||||||+++.|++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999864
No 51
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.24 E-value=1.3e-06 Score=72.54 Aligned_cols=23 Identities=39% Similarity=0.704 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+++|+||+|||||||++.|+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 68999999999999999999864
No 52
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.23 E-value=6.9e-06 Score=68.65 Aligned_cols=118 Identities=13% Similarity=0.189 Sum_probs=60.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG 188 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG 188 (264)
...+|+|+|++||||||+++.|++.+.. .........|... +..|..+ .+.+...+.+|.+... ...+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~-~~i~~d~~~~~~~--~~~~~~~----~~~i~~~~~~g~~~~~----~~~~~ 82 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSF-VHLSAGDLLRAEQ--GRAGSQY----GELIKNCIKEGQIVPQ----EITLA 82 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSC-EEEEHHHHHHHHH--HSTTCSC----HHHHHHHHHTTCCCCH----HHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCc-eEEeHHHHHHHHH--hccCCHH----HHHHHHHHHcCCcCCH----HHHHH
Confidence 4578999999999999999999987532 1111111111100 0011111 1233333444443321 11122
Q ss_pred CCHHHHHHHHHcC-CeEEEEcCHH---HHHHHhcCC-CCcEEEEEeCCChHHHHH
Q psy14166 189 TSSDSVLELVNSG-RVAVLNPAYQ---SLKVLRSPA-FKPLVLFIAPPPFAALKE 238 (264)
Q Consensus 189 t~~~si~~vl~~G-ki~vld~~~~---~~~~Lr~~~-~~p~vIfI~pps~e~l~~ 238 (264)
...+.+..+++.| ..+|+|+.+. ....+.... ....+|||.+|. +.+.+
T Consensus 83 ~l~~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~-e~~~~ 136 (203)
T 1ukz_A 83 LLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPE-DIMLE 136 (203)
T ss_dssp HHHHHHHHHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCH-HHHHH
T ss_pred HHHHHHHhhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCH-HHHHH
Confidence 2234556677777 4778887642 222333211 134789999984 44433
No 53
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.22 E-value=1.4e-06 Score=73.76 Aligned_cols=110 Identities=18% Similarity=0.106 Sum_probs=59.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCCH
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSS 191 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~~ 191 (264)
.|+|+||+||||||+++.|++.+.- .......+.|..... +.+ ....+...+..+.++... ...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~-~~i~~d~~~r~~~~~---~~~----~~~~~~~~~~~g~~~~~~--------~~~ 65 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGI-PHISTGDMFRAAMKE---ETP----LGLEAKSYIDKGELVPDE--------VTI 65 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC-CEEEHHHHHHHHHHT---TCH----HHHHHHHHHTTTCCCCHH--------HHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-cEEeHHHHHHHHHhc---CCH----HHHHHHHHHHCCCCCCHH--------HHH
Confidence 4899999999999999999887642 122222333332111 111 112334444455544321 111
Q ss_pred HHHHHHHHc---CCeEEEEcCH---HHHHHHh----cCCCCc-EEEEEeCCChHHHHH
Q psy14166 192 DSVLELVNS---GRVAVLNPAY---QSLKVLR----SPAFKP-LVLFIAPPPFAALKE 238 (264)
Q Consensus 192 ~si~~vl~~---Gki~vld~~~---~~~~~Lr----~~~~~p-~vIfI~pps~e~l~~ 238 (264)
..+.+.+.. ++.+|+|..| +....+. ..+..| .+|||.+|. +++.+
T Consensus 66 ~~~~~~l~~~~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~-e~~~~ 122 (216)
T 3dl0_A 66 GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDK-DVLME 122 (216)
T ss_dssp HHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCG-GGHHH
T ss_pred HHHHHHHhcccccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCH-HHHHH
Confidence 333444433 7789999654 3333332 244455 799999985 45544
No 54
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.21 E-value=8.6e-08 Score=81.92 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+..|+|+||+||||||+++.|++.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998754
No 55
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.20 E-value=1.6e-06 Score=72.41 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+.+|+|+|++||||||+++.|++...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 47899999999999999999998754
No 56
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.18 E-value=1.5e-06 Score=73.42 Aligned_cols=110 Identities=19% Similarity=0.149 Sum_probs=59.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecCCH
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSS 191 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt~~ 191 (264)
.|+|+||+||||||+++.|++.+.. .......+.|....+ +.+ ....+...+..+.++... ...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~-~~i~~d~~~r~~~~~---~~~----~~~~~~~~~~~g~~~~~~--------~~~ 65 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI-PHISTGDMFRAAIKN---GTE----LGLKAKSFMDQGNLVPDE--------VTI 65 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC-CEEEHHHHHHHHHHT---TCH----HHHHHHHHHHHTCCCCHH--------HHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-cEeeHHHHHHHHHhc---CCH----HHHHHHHHHHCCCCCCHH--------HHH
Confidence 5889999999999999999876531 112222333332111 111 112344444555554321 112
Q ss_pred HHHHHHHH---cCCeEEEEcCH---HHHHHHh----cCCCCc-EEEEEeCCChHHHHH
Q psy14166 192 DSVLELVN---SGRVAVLNPAY---QSLKVLR----SPAFKP-LVLFIAPPPFAALKE 238 (264)
Q Consensus 192 ~si~~vl~---~Gki~vld~~~---~~~~~Lr----~~~~~p-~vIfI~pps~e~l~~ 238 (264)
..+.+.+. .+..+|+|..| +..+.+. ..+..| .+|||.+|. +.+.+
T Consensus 66 ~~~~~~l~~~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~-e~~~~ 122 (216)
T 3fb4_A 66 GIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQ-EELMK 122 (216)
T ss_dssp HHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCH-HHHHH
T ss_pred HHHHHHHhcccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCH-HHHHH
Confidence 33444443 37789999654 3333332 244455 799999984 55544
No 57
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.16 E-value=4.1e-06 Score=67.09 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+|+|+||+||||||+++.| ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47999999999999999999 543
No 58
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.15 E-value=4e-06 Score=67.63 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+|+|+|++||||||+++.|++..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999874
No 59
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.14 E-value=2.6e-06 Score=75.72 Aligned_cols=106 Identities=17% Similarity=0.261 Sum_probs=57.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeec---Ccee
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYK---GHLY 187 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~---g~~Y 187 (264)
.+|+|+|++||||||+++.|.+..+. +.+++.+.+...+....--+...+. ...+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~----------------------~~~i~~D~~r~~~~~~~~g~~~~~~~~~~~~~ 60 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPG----------------------FYNINRDDYRQSIMAHEERDEYKYTKKKEGIV 60 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTT----------------------EEEECHHHHHHHHTTSCCCC---CCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCC----------------------cEEecccHHHHHhccCCcccccccchhhhhHH
Confidence 58999999999999999999975321 2233333333322110000000000 0000
Q ss_pred -cCCHHHHHHHH---HcCCeEEEEcCH---HHHHHHh----cCCCCcEEEEEeCCChHHHHHH
Q psy14166 188 -GTSSDSVLELV---NSGRVAVLNPAY---QSLKVLR----SPAFKPLVLFIAPPPFAALKES 239 (264)
Q Consensus 188 -Gt~~~si~~vl---~~Gki~vld~~~---~~~~~Lr----~~~~~p~vIfI~pps~e~l~~~ 239 (264)
....+.+...+ +.|..+|+|..+ .....++ ..+....+|||.+| .+++.++
T Consensus 61 ~~~~~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~-~e~~~~R 122 (301)
T 1ltq_A 61 TGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVP-WTELVKR 122 (301)
T ss_dssp HHHHHHHHHHHTTSCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCC-HHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECC-HHHHHHH
Confidence 01123456667 788999999854 2233332 33445579999985 6666543
No 60
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.11 E-value=7.9e-06 Score=67.63 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+|+|+|++||||||+++.|++.+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999864
No 61
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.11 E-value=5.4e-06 Score=68.14 Aligned_cols=26 Identities=31% Similarity=0.575 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.++.|+|+|++||||||+++.|++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 62
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.09 E-value=6.8e-06 Score=67.96 Aligned_cols=26 Identities=31% Similarity=0.357 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+|+|+|++||||||+++.|+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998764
No 63
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.08 E-value=2.3e-06 Score=72.65 Aligned_cols=26 Identities=27% Similarity=0.167 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+|+|+|++||||||+++.|.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999999999998764
No 64
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.06 E-value=2.5e-05 Score=65.32 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+..|+|+|++||||||+++.|++.+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999999864
No 65
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.06 E-value=9.8e-06 Score=69.51 Aligned_cols=106 Identities=20% Similarity=0.277 Sum_probs=60.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccC----CCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCcee
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTT----RPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLY 187 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TT----R~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~Y 187 (264)
.|+|+|++||||||+++.|++.+. + .+ ..| |.+..+ |..+ ...+...+.+|.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg--~--~~-i~~dd~~r~~~~~---~~~~----g~~i~~~~~~g~~~~~~------- 62 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS--L--AH-IESGGIFREHIGG---GTEL----GKKAKEFIDRGDLVPDD------- 62 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT--C--EE-EEHHHHHHHHTTT---TCHH----HHHHHHHHTTTCCCCHH-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--C--eE-EchHHHHHHHHHc---CCHH----HHHHHHHHHcCCcCcHH-------
Confidence 689999999999999999998643 1 11 122 333211 1111 12344444445443210
Q ss_pred cCCHHHHHHHHHc--CCeEEEEcCHHH---HHHH----hcCCCCc-EEEEEeCCChHHHHH
Q psy14166 188 GTSSDSVLELVNS--GRVAVLNPAYQS---LKVL----RSPAFKP-LVLFIAPPPFAALKE 238 (264)
Q Consensus 188 Gt~~~si~~vl~~--Gki~vld~~~~~---~~~L----r~~~~~p-~vIfI~pps~e~l~~ 238 (264)
.-...+...+++ |+.+|+|+.+.. ++.| ...+..| .+||+..| .+.+.+
T Consensus 63 -~~~~~i~~~l~~~~g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~-~e~~~~ 121 (223)
T 2xb4_A 63 -ITIPMVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLP-REVAKN 121 (223)
T ss_dssp -HHHHHHHHHHHHHCTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHH
T ss_pred -HHHHHHHHHHhcccCCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHH
Confidence 112446666777 999999975532 3333 2334445 68999987 455544
No 66
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.02 E-value=1e-05 Score=79.21 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=65.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCC-cceeeeecCcee
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGK-MIEFGEYKGHLY 187 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~-flE~~~~~g~~Y 187 (264)
.+.+|+|+|++||||||+++.|.+.... .|..+.+++.+.+...+..+. |-+ .+... .+
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~------------------~G~~~~~ld~D~ir~~l~~~~~f~~-~er~~-~l 430 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQA------------------RGRKVTLLDGDVVRTHLSRGLGFSK-EDRIT-NI 430 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH------------------TTCCEEEECHHHHHHHTCTTCCSSH-HHHHH-HH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhh------------------cCCeEEEECchHhhhhhcccccccH-HHHHH-HH
Confidence 4678999999999999999999876321 245667777776655432211 111 00011 11
Q ss_pred cCCHHHHHHHHHcCCeEEEEcCH---HHHHHHhcC--CCCcEEEEEeCCChHHHHHH
Q psy14166 188 GTSSDSVLELVNSGRVAVLNPAY---QSLKVLRSP--AFKPLVLFIAPPPFAALKES 239 (264)
Q Consensus 188 Gt~~~si~~vl~~Gki~vld~~~---~~~~~Lr~~--~~~p~vIfI~pps~e~l~~~ 239 (264)
......+..+++.|..+|+|... .....++.. .....+|||++| .+++.++
T Consensus 431 ~~i~~~~~~~l~~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~-~e~~~~R 486 (546)
T 2gks_A 431 LRVGFVASEIVKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAP-VEVCEER 486 (546)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECC-GGGHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCC-HHHHHHH
Confidence 21123455677899999999532 223333321 123489999986 5555543
No 67
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.00 E-value=1.2e-05 Score=71.21 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
++.|+|+|++|||||||++.|++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999999999999999999853
No 68
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.99 E-value=2.9e-06 Score=71.15 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+|+|+|++||||||+++.|++..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999864
No 69
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.99 E-value=1.9e-05 Score=68.20 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=29.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKK 150 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r 150 (264)
+.+|+|.|++||||||+++.|.+..... +...-.+||.|.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~ 42 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPG 42 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCC
Confidence 5899999999999999999998875321 221125778874
No 70
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.98 E-value=1.2e-05 Score=67.60 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+|+|+||||||||||++.|+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999999999864
No 71
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.95 E-value=2.2e-05 Score=65.16 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+..|+|+|++||||||+++.|++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999987
No 72
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.95 E-value=4.8e-06 Score=68.30 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
++|+|+|++||||||+++.|++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999864
No 73
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.94 E-value=2.9e-05 Score=62.67 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.|+|+|++||||||+++.|.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999863
No 74
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.92 E-value=7.3e-06 Score=72.14 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
+.+|+|+|++||||||+++.|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999975
No 75
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.88 E-value=1.9e-05 Score=64.79 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+..|+|+|++||||||+++.|++..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998754
No 76
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.87 E-value=2.6e-06 Score=71.89 Aligned_cols=125 Identities=17% Similarity=0.175 Sum_probs=58.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC-Ccccccc--ccC-CC----CCCCCCCCcceee--cCHHHHHHHH----HcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD-KFTQVTP--YTT-RP----KKPGEEDGKEYHF--VSHETMTSLI----SAG 174 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~-~f~~~v~--~TT-R~----~r~gE~~G~dY~f--vs~~~f~~~i----~~~ 174 (264)
.+.+|+|+|++|||||||++.|....+. .....+. ... ++ ...+...+.+|++ ++.+.+.+.+ ..+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~~~ 100 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLKAS 100 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHhcC
Confidence 4689999999999999999999875321 1111110 111 11 0112222223222 4555665443 123
Q ss_pred CcceeeeecCceecCCHHHHHHHHHcCCeEEEEcCHHHHHHHhcCCCCcEEEEEeCCChHHHH
Q psy14166 175 KMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALK 237 (264)
Q Consensus 175 ~flE~~~~~g~~YGt~~~si~~vl~~Gki~vld~~~~~~~~Lr~~~~~p~vIfI~pps~e~l~ 237 (264)
..+....|.-. ++.... ....+..+.++|+++.......+. .+...+|||.+|....++
T Consensus 101 ~~~~~~~~~~~-~~~~~~-~~~~~~~~~~vIveg~~l~~~~~~--~~~d~~i~v~~~~~~~~~ 159 (201)
T 1rz3_A 101 HQLTLPFYDHE-TDTHSK-RTVYLSDSDMIMIEGVFLQRKEWR--PFFDFVVYLDCPREIRFA 159 (201)
T ss_dssp SEEEEEEEETT-TTEEEE-EEEECTTCSEEEEEETTTTSTTTG--GGCSEEEEECCC------
T ss_pred CccccCceecc-CCCCCC-ceEEeCCCcEEEEechhhccHHHH--hhcCEEEEEeCCHHHHHH
Confidence 33333333211 111100 001123577899998763322221 234589999998644433
No 77
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.87 E-value=5.6e-08 Score=87.75 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=18.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
+.+|+|.||+|||||||++.|.+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 78
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.87 E-value=2.1e-05 Score=64.48 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+.+|+|+|++||||||+++.|++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 79
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.83 E-value=3e-05 Score=63.67 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+|+|+|++||||||+++.|++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999999863
No 80
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.80 E-value=5.3e-05 Score=65.71 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
++++|+|+||+||||+|+++.|++.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999875
No 81
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.79 E-value=3e-05 Score=63.57 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+|+|+|++||||||+++.|++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999864
No 82
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.78 E-value=6.1e-05 Score=63.91 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+..|+|+|++||||||+++.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4789999999999999999999864
No 83
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.78 E-value=3.3e-08 Score=83.31 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++|+|+|++||||||+++.|++.+.
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999998754
No 84
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.77 E-value=4.8e-05 Score=64.68 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+..|+|+|++||||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999864
No 85
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.76 E-value=3.3e-05 Score=62.47 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
++|+|+|++||||||+++.|++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999863
No 86
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.69 E-value=8.1e-05 Score=60.99 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+|+|+|++||||||+++.|....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998863
No 87
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.68 E-value=5.9e-05 Score=75.08 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
++.+|+|+|++||||||+++.|.+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999998864
No 88
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.67 E-value=0.0001 Score=71.65 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=60.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCc-ceeeeecCc-e
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKM-IEFGEYKGH-L 186 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~f-lE~~~~~g~-~ 186 (264)
.+.+|+|+|.+|+||||+++.|+..... .+.+...++.+++........- .++..-.+. .
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~------------------~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~ 95 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNW------------------IGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEA 95 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH------------------TTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh------------------cCCCeEEecccHHHHHhccCCccccccCcccHHH
Confidence 3468999999999999999999876321 1222223344444443322210 000000000 0
Q ss_pred ecCC-------HHHHHHHH--HcCCeEEEEcCH---HH----HHHHhcCCCCcEEEEEeCCChHHHHHHH
Q psy14166 187 YGTS-------SDSVLELV--NSGRVAVLNPAY---QS----LKVLRSPAFKPLVLFIAPPPFAALKESR 240 (264)
Q Consensus 187 YGt~-------~~si~~vl--~~Gki~vld~~~---~~----~~~Lr~~~~~p~vIfI~pps~e~l~~~r 240 (264)
+... .+.+...+ +.|.++|+|... .. .+.++..++..++|++.+|+.+.++++.
T Consensus 96 ~~~re~~~~~~l~~~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri 165 (520)
T 2axn_A 96 MKVRKQCALAALRDVKSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNI 165 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHH
Confidence 0000 11122233 578899999764 22 2334444556677888888888776543
No 89
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.66 E-value=7.9e-05 Score=61.25 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHH
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLI 131 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~ 131 (264)
.+.+++|+||||||||||++.+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 46899999999999999999754
No 90
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.62 E-value=0.0001 Score=63.13 Aligned_cols=107 Identities=18% Similarity=0.285 Sum_probs=56.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCCCCccccccc--cCCCCCCCCC-CCcceeecCHHHHHHHHHcCCcceeeeecCceec
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPY--TTRPKKPGEE-DGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYG 188 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~--TTR~~r~gE~-~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YG 188 (264)
+|+|+||+||||+|+++.|++.+. +.. ++. .=|. ++ .+.+. -......+.+|.++...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g--~~~-istGdllR~----~i~~~t~l----g~~~~~~~~~G~lvpd~-------- 62 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG--FVH-ISTGDILRE----AVQKGTPL----GKKAKEYMERGELVPDD-------- 62 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC--CEE-EEHHHHHHH----HHHHTCHH----HHHHHHHHHHTCCCCHH--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC--CeE-EcHHHHHHH----HHHhcChh----hhhHHHHHhcCCcCCHH--------
Confidence 588999999999999999998753 111 100 0000 00 00000 01223334455543211
Q ss_pred CCHHHHHHHHHcCCeEEEEcCHHHHHH-------HhcCCCCc-EEEEEeCCChHHHHH
Q psy14166 189 TSSDSVLELVNSGRVAVLNPAYQSLKV-------LRSPAFKP-LVLFIAPPPFAALKE 238 (264)
Q Consensus 189 t~~~si~~vl~~Gki~vld~~~~~~~~-------Lr~~~~~p-~vIfI~pps~e~l~~ 238 (264)
.-.+-+.+.+.+..-.|||+-|..+.+ +...+..+ .||++..|. +++.+
T Consensus 63 iv~~lv~~~l~~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~-e~l~~ 119 (206)
T 3sr0_A 63 LIIALIEEVFPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPD-EVVIE 119 (206)
T ss_dssp HHHHHHHHHCCSSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCH-HHHHH
T ss_pred HHHHHHHHhhccCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCH-HHHHH
Confidence 112334455555566899998743322 23445554 689999985 44444
No 91
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.60 E-value=6.9e-05 Score=73.72 Aligned_cols=112 Identities=14% Similarity=0.193 Sum_probs=59.1
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCC-cceeecCHHHHHHHHHcC-Ccceeeeec
Q psy14166 106 METLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDG-KEYHFVSHETMTSLISAG-KMIEFGEYK 183 (264)
Q Consensus 106 ~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G-~dY~fvs~~~f~~~i~~~-~flE~~~~~ 183 (264)
..+.+.+|+|+|+|||||||+++.|.+.... .| ..+.+++.+.+...+..+ .|.+. +..
T Consensus 392 ~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~------------------~G~~~~~~lD~D~ir~~l~~~~~f~~~-er~ 452 (573)
T 1m8p_A 392 RATQGFTIFLTGYMNSGKDAIARALQVTLNQ------------------QGGRSVSLLLGDTVRHELSSELGFTRE-DRH 452 (573)
T ss_dssp TTTCCEEEEEECSTTSSHHHHHHHHHHHHHH------------------HCSSCEEEEEHHHHHHHTCTTCCCSHH-HHH
T ss_pred ccccceEEEeecCCCCCHHHHHHHHHHHhcc------------------cCCceEEEECcHHHHHHhccccCCChh-HHH
Confidence 3345678999999999999999999886421 01 233444444443321110 01000 000
Q ss_pred CceecCCHHHHHHHHHcCCeEEEEcCH-------HHHHHHhcCCCCcEEEEEeCCChHHHHHH
Q psy14166 184 GHLYGTSSDSVLELVNSGRVAVLNPAY-------QSLKVLRSPAFKPLVLFIAPPPFAALKES 239 (264)
Q Consensus 184 g~~YGt~~~si~~vl~~Gki~vld~~~-------~~~~~Lr~~~~~p~vIfI~pps~e~l~~~ 239 (264)
.+ +..-.+.+...+++|.++|++.-. ...+.++..+ ...+|||++| ++++.++
T Consensus 453 ~~-i~ri~~v~~~~~~~g~~VI~~~is~~~~~R~~~r~l~~~~g-~~~~V~Lda~-~ev~~~R 512 (573)
T 1m8p_A 453 TN-IQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAG-SFFLVHVATP-LEHCEQS 512 (573)
T ss_dssp HH-HHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHTTS-EEEEEEECCC-HHHHHHH
T ss_pred HH-HHHHHHHHHHHHhCCCEEEEEcCCCcHHHHHHHHHHHHhcC-CeEEEEEeCC-HHHHHHH
Confidence 00 000012445566789888887532 1222233222 2478999987 6666554
No 92
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.58 E-value=4.5e-05 Score=68.07 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+.+|+|+|++||||||+++.|...
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~l 98 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKNL 98 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 4568999999999999999999853
No 93
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.57 E-value=0.00014 Score=62.06 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+..|+|+|++||||||+++.|++...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 47899999999999999999998753
No 94
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.57 E-value=7.2e-05 Score=63.29 Aligned_cols=23 Identities=13% Similarity=0.328 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.|+|+|++||||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999864
No 95
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.54 E-value=4e-05 Score=63.12 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+.+++|+||+|||||||++.|++.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4689999999999999999999886
No 96
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.47 E-value=2.2e-05 Score=65.72 Aligned_cols=94 Identities=13% Similarity=0.108 Sum_probs=47.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCC--Ccc-eeecCHHHHHHHHHcCCcceeeeecCcee
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEED--GKE-YHFVSHETMTSLISAGKMIEFGEYKGHLY 187 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~--G~d-Y~fvs~~~f~~~i~~~~flE~~~~~g~~Y 187 (264)
+.++|+|+||||||||++.|+...+. .+..+..+++.++..+++ |.| |+|++ ..+....- ....++..+. ..|
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~-~g~~v~~i~~~~~~~~id~~g~Ds~~~~~-~G~~~v~i-~~~~~~~~~~-~~~ 82 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCA-RGIRPGLIKHTHHDMDVDKPGKDSYELRK-AGAAQTIV-ASQQRWALMT-ETP 82 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCC------------CHHH-HTCSEEEE-ECSSEEEEEE-ECS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccc-cCCceeEEeeCCCccccCCCCCceEEEEe-CCcceeec-ccchhheeee-ecc
Confidence 68999999999999999999986432 233444555666554444 444 44432 11100000 0112333322 247
Q ss_pred cCCHHHHHHHHHcC-----CeEEEEc
Q psy14166 188 GTSSDSVLELVNSG-----RVAVLNP 208 (264)
Q Consensus 188 Gt~~~si~~vl~~G-----ki~vld~ 208 (264)
++....++++++.- .+++++.
T Consensus 83 ~~~~~~L~~ll~r~~~~~~D~ilIEg 108 (174)
T 1np6_A 83 DEEELDLQFLASRMDTSKLDLILVEG 108 (174)
T ss_dssp SSCCCCHHHHHHHSCGGGCSEEEEES
T ss_pred CCchhhHHHHHHhcCCCcchHHHHHH
Confidence 77666667766431 3455554
No 97
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.46 E-value=0.00035 Score=59.62 Aligned_cols=114 Identities=14% Similarity=0.243 Sum_probs=61.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCcceeeeecCceecC-
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGT- 189 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~flE~~~~~g~~YGt- 189 (264)
+.|+|-|+.||||||+++.|.+..... ..+ ..||.|... .. -+.+.+.+.++.-+.... .-.+|-.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~--~~v-~~~~eP~~t-----~~----g~~ir~~l~~~~~~~~~~-~~lLf~a~ 69 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKD--YDV-IMTREPGGV-----PT----GEEIRKIVLEGNDMDIRT-EAMLFAAS 69 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTT--SCE-EEEESSTTC-----HH----HHHHHHHHHSSCCCCHHH-HHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCC--CCE-EEeeCCCCC-----hH----HHHHHHHHhcccCCCHHH-HHHHHHHH
Confidence 689999999999999999998865321 222 356766321 11 123333333322110000 0001111
Q ss_pred ----CHHHHHHHHHcCCeEEEEcCHH---------------HHHHHh---cCCCCc-EEEEEeCCChHHHHH
Q psy14166 190 ----SSDSVLELVNSGRVAVLNPAYQ---------------SLKVLR---SPAFKP-LVLFIAPPPFAALKE 238 (264)
Q Consensus 190 ----~~~si~~vl~~Gki~vld~~~~---------------~~~~Lr---~~~~~p-~vIfI~pps~e~l~~ 238 (264)
-.+.|...+++|+++|+|=-.. .+..+. ...+.| .+||++.| +++..+
T Consensus 70 R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~-~e~~~~ 140 (205)
T 4hlc_A 70 RREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVS-AEVGRE 140 (205)
T ss_dssp HHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCC-HHHHHH
Confidence 1234566788999999885432 123332 234566 68999987 555544
No 98
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.46 E-value=7e-05 Score=60.62 Aligned_cols=26 Identities=35% Similarity=0.668 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+..|+|+||+|||||||++.|+....
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999998753
No 99
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.45 E-value=9.6e-05 Score=65.73 Aligned_cols=27 Identities=37% Similarity=0.533 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||||||||||++.|+...+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 568999999999999999999998764
No 100
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.44 E-value=0.00027 Score=60.76 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+.+|+|+|++||||||+++.|++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999975
No 101
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.41 E-value=9.2e-05 Score=62.51 Aligned_cols=28 Identities=36% Similarity=0.405 Sum_probs=24.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 108 TLRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 108 ~~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
..+.+|+|+||||||||||++.|....+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3568999999999999999999988753
No 102
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.41 E-value=8.9e-05 Score=64.59 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||||||||||++.|+...+.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 4689999999999999999999987653
No 103
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.39 E-value=0.0011 Score=56.21 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=22.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+|+|.|++||||||+.+.|++...
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999998753
No 104
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.38 E-value=2e-05 Score=68.66 Aligned_cols=42 Identities=14% Similarity=0.096 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKK 150 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r 150 (264)
++.+|+|.|++||||||+++.|.+......+..+..|||.|.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~ 61 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG 61 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence 568999999999999999999998753202335556688875
No 105
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.36 E-value=5.7e-05 Score=80.81 Aligned_cols=78 Identities=26% Similarity=0.317 Sum_probs=60.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHH---HHcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSL---ISAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~---i~~~~flE~~~~~ 183 (264)
+|..|+|+|+||||||||++.|.+.+. |..|+ +||.|..-++.+.+... +.+..++..++..
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~-------------p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIr 1170 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYD-------------TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIA 1170 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSC-------------CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHH
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCcc-------------CCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHH
Confidence 468999999999999999999988753 33443 68988888888888765 4678899999998
Q ss_pred Cc-eecC-----CHHHHHHHHH
Q psy14166 184 GH-LYGT-----SSDSVLELVN 199 (264)
Q Consensus 184 g~-~YGt-----~~~si~~vl~ 199 (264)
.| .||. +.+.|.++++
T Consensus 1171 eNI~~gld~~~~sd~ei~~Al~ 1192 (1321)
T 4f4c_A 1171 ENIIYGLDPSSVTMAQVEEAAR 1192 (1321)
T ss_dssp HHHSSSSCTTTSCHHHHHHHHH
T ss_pred HHHhccCCCCCCCHHHHHHHHH
Confidence 88 4773 4566666655
No 106
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.35 E-value=9.4e-05 Score=66.74 Aligned_cols=25 Identities=40% Similarity=0.587 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+.+++|+||||||||||+|.|. ..+
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 5899999999999999999999 654
No 107
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.34 E-value=8.9e-05 Score=64.20 Aligned_cols=88 Identities=7% Similarity=0.040 Sum_probs=50.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHHcCCc-----ceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKM-----IEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~~~~f-----lE~~~~~ 183 (264)
++.+|+|.|++||||||+++.|.+.... .+ .+||.|..+ ..+ -+.+...+.+..+ .+..-|.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~----~~-~~~~ep~~~----t~~----g~~ir~~l~~~~~~~~~~~~~llf~ 70 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP----NC-KLLKFPERS----TRI----GGLINEYLTDDSFQLSDQAIHLLFS 70 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS----SE-EEEESSCTT----SHH----HHHHHHHHHCTTSCCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc----cc-eEEEecCCC----ChH----HHHHHHHHHhcccCCCHHHHHHHHH
Confidence 4689999999999999999999988653 11 345655311 111 0122222222210 0000111
Q ss_pred CceecCCHHHHHHHHHcCCeEEEEcCH
Q psy14166 184 GHLYGTSSDSVLELVNSGRVAVLNPAY 210 (264)
Q Consensus 184 g~~YGt~~~si~~vl~~Gki~vld~~~ 210 (264)
.+.+. ..+.|...+++|+++|+|=-.
T Consensus 71 a~R~~-~~~~I~paL~~g~~VI~DRy~ 96 (216)
T 3tmk_A 71 ANRWE-IVDKIKKDLLEGKNIVMDRYV 96 (216)
T ss_dssp HHHHT-THHHHHHHHHTTCEEEEESCH
T ss_pred HHHHH-HHHHHHHHHHcCCEEEEeccH
Confidence 11222 345788889999999998664
No 108
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.33 E-value=0.00011 Score=63.39 Aligned_cols=28 Identities=39% Similarity=0.395 Sum_probs=24.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||||||||||++.|+...+.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p 56 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDAP 56 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4689999999999999999999987653
No 109
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.31 E-value=0.00077 Score=56.66 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+|+|+|++||||||+++.|++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999864
No 110
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.29 E-value=0.00013 Score=61.10 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+|+|+||+|||||||++.|....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999874
No 111
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.28 E-value=9.7e-05 Score=67.23 Aligned_cols=28 Identities=32% Similarity=0.526 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+..++|+||||||||||++.|+..++.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p 106 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYDI 106 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCC
Confidence 5699999999999999999999987643
No 112
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.28 E-value=0.00015 Score=64.25 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||||||||||++.|+...+.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5689999999999999999999988653
No 113
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.27 E-value=0.00012 Score=78.50 Aligned_cols=78 Identities=18% Similarity=0.269 Sum_probs=58.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHH---HHcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSL---ISAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~---i~~~~flE~~~~~ 183 (264)
+|..++|+||||||||||++.|.+.++. ..|+ ++|.+..-++.+.+... +.+..++..++..
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~~-------------~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~ 509 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYDV-------------LKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIE 509 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSCC-------------SEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHH
T ss_pred CCcEEEEEecCCCcHHHHHHHhcccccc-------------ccCcccCCCccchhccHHHHhhcccccCCcceeeCCchh
Confidence 5699999999999999999999988642 2332 57877777777777665 3678889999988
Q ss_pred Cce-ecC---CHHHHHHHHH
Q psy14166 184 GHL-YGT---SSDSVLELVN 199 (264)
Q Consensus 184 g~~-YGt---~~~si~~vl~ 199 (264)
+|. ||. +.+.+.++.+
T Consensus 510 eNI~~g~~~~~~~~v~~a~~ 529 (1321)
T 4f4c_A 510 ENISLGKEGITREEMVAACK 529 (1321)
T ss_dssp HHHHTTCTTCCHHHHHHHHH
T ss_pred HHHhhhcccchHHHHHHHHH
Confidence 884 774 3455555544
No 114
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.27 E-value=0.0017 Score=56.29 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
..+|+|.|++||||||+++.|++..
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999999864
No 115
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.26 E-value=0.00013 Score=68.96 Aligned_cols=56 Identities=29% Similarity=0.456 Sum_probs=36.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHH
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETM 167 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f 167 (264)
..|+|+|++|||||||+|+|+..... +....+.|||.+..+. .+|.++.++|...+
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~-~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~ 238 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERA-LVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL 238 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTE-EECCCC------CCEEEEETTEEEEESSCSCC
T ss_pred ceEEEECCCCCCHHHHHHHHhCCccc-ccCCCCCCcCCceEEEEEECCEEEEEEECCCC
Confidence 57999999999999999999986531 3445678899887654 46777777765433
No 116
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.26 E-value=0.00016 Score=64.72 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||||||||||++.|+...+.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p 60 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILKP 60 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 5689999999999999999999987653
No 117
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.26 E-value=0.00018 Score=59.07 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...|
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 468999999999999999999998765
No 118
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.25 E-value=0.00017 Score=63.59 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|||||||++.|+...+.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p 59 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLKA 59 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5689999999999999999999988653
No 119
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.25 E-value=0.00017 Score=63.25 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||||||||||++.|+...+.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 61 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYIP 61 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5689999999999999999999988653
No 120
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.24 E-value=0.00018 Score=62.83 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|||||||++.|+...+.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 58 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVRA 58 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4689999999999999999999988653
No 121
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.24 E-value=0.00018 Score=62.32 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|||||||++.|+...+.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELEP 60 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 5689999999999999999999988653
No 122
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.23 E-value=0.00023 Score=63.97 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+.+++|+||||||||||+|.|+...+
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCeEEEECCCCCcHHHHHHHhccccc
Confidence 58999999999999999999998754
No 123
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.23 E-value=0.00022 Score=66.58 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||||||||||++.|....+.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p 80 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLERP 80 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCCC
Confidence 5699999999999999999999987643
No 124
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.23 E-value=0.00018 Score=63.87 Aligned_cols=28 Identities=43% Similarity=0.533 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|||||||++.|+...+.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~p 76 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLEDF 76 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCCC
Confidence 5689999999999999999999988653
No 125
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.22 E-value=0.00015 Score=63.22 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|||||||++.|+...+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 568999999999999999999998764
No 126
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.22 E-value=0.00022 Score=69.94 Aligned_cols=26 Identities=38% Similarity=0.397 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+|+|+|+||||||||++.|+...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 56899999999999999999999874
No 127
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.22 E-value=0.00018 Score=62.04 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|||||||++.|+...+.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p 61 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLKP 61 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4689999999999999999999988653
No 128
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.20 E-value=0.00018 Score=62.77 Aligned_cols=28 Identities=25% Similarity=0.320 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||||||||||++.|+...+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQP 54 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5689999999999999999999988653
No 129
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.20 E-value=0.0002 Score=63.73 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||||||||||++.|+...+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 568999999999999999999998864
No 130
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.20 E-value=0.00019 Score=63.24 Aligned_cols=29 Identities=31% Similarity=0.583 Sum_probs=25.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDK 137 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~ 137 (264)
.+.+++|+||+|+|||||++.|+...+..
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 56899999999999999999999987543
No 131
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.18 E-value=0.00022 Score=63.10 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|||||||++.|+...+.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p 67 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIKP 67 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5689999999999999999999988653
No 132
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.18 E-value=0.00021 Score=63.18 Aligned_cols=27 Identities=22% Similarity=0.397 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|||||||++.|+...+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 568999999999999999999998765
No 133
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.18 E-value=0.0011 Score=63.19 Aligned_cols=25 Identities=16% Similarity=0.367 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+..|+|+|.+|||||||+++|+...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998763
No 134
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.17 E-value=0.00022 Score=63.80 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|||||||++.|+...+.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p 73 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEPA 73 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 5689999999999999999999988653
No 135
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.14 E-value=0.00025 Score=62.83 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|||||||++.|+...+.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p 59 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIEP 59 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 5689999999999999999999988653
No 136
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.14 E-value=0.00026 Score=62.45 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|||||||++.|+...+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 57 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHRP 57 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4689999999999999999999988654
No 137
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.12 E-value=0.00034 Score=58.59 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+|+|+|++|||||||++.|.+..+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999998753
No 138
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.12 E-value=0.00028 Score=60.06 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHH
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLI 131 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~ 131 (264)
.+.+++|+||+|||||||++.|+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 56899999999999999999888
No 139
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.12 E-value=0.00028 Score=60.96 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
+.+|+|+||+|||||||++.|++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999999954
No 140
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.11 E-value=0.00028 Score=61.88 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+.+++|+||+|+|||||++.|+..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999999999986
No 141
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.11 E-value=0.00028 Score=58.83 Aligned_cols=24 Identities=21% Similarity=0.567 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.++|+||+|||||||++.|+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998753
No 142
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.09 E-value=0.0003 Score=65.43 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||||||||||++.|+...+.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCC
Confidence 4689999999999999999999998643
No 143
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.08 E-value=0.0001 Score=67.17 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+++++|+||||||||||+|.|+....
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHhccccc
Confidence 358999999999999999999987653
No 144
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.08 E-value=0.00035 Score=61.15 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=23.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+++|+||+|||||||++.|+...+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 79999999999999999999998653
No 145
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.07 E-value=0.00031 Score=59.26 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
..|+|+||+|||||||++.|++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999864
No 146
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.07 E-value=0.00032 Score=62.25 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+.+++|+||+|||||||++.|+..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999999999986
No 147
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.05 E-value=0.00031 Score=59.03 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+.+++|+||||||||||++.|+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999875
No 148
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.05 E-value=0.00054 Score=63.31 Aligned_cols=28 Identities=32% Similarity=0.551 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+..++|+||+|||||||++.|+...+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4589999999999999999999998764
No 149
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.04 E-value=0.00036 Score=64.78 Aligned_cols=28 Identities=32% Similarity=0.532 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||||||||||++.|+...+.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p 67 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLERP 67 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 4689999999999999999999998653
No 150
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.04 E-value=0.00036 Score=65.44 Aligned_cols=28 Identities=39% Similarity=0.590 Sum_probs=25.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||||||||||++.|+...+.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p 55 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLETI 55 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCCC
Confidence 5689999999999999999999998654
No 151
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.03 E-value=0.00038 Score=64.68 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||||||||||++.|+...+.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p 55 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYKP 55 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCCC
Confidence 4689999999999999999999998643
No 152
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.03 E-value=0.00036 Score=62.02 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.++|+||||+|||||++.|....+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998753
No 153
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.02 E-value=0.00039 Score=60.74 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+|+|+||+|||||||++.|++..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999999653
No 154
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.02 E-value=0.00045 Score=64.26 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||||||||||+|.|+...+
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 357999999999999999999998764
No 155
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.02 E-value=0.00035 Score=63.55 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 108 TLRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 108 ~~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
..+.+|+|+||||||||||++.|....
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 356899999999999999999998864
No 156
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.01 E-value=0.0004 Score=64.67 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||||||||||++.|+...+.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p 55 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYKP 55 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCC
Confidence 4689999999999999999999998653
No 157
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.01 E-value=0.00037 Score=60.32 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+|+|+||+|||||||++.|+...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999998864
No 158
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.01 E-value=0.00036 Score=62.90 Aligned_cols=27 Identities=15% Similarity=0.275 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|||||||++.|+...+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 568999999999999999999998765
No 159
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.00 E-value=0.002 Score=56.32 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
-.+.|+||+||||+|+++.|++.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999864
No 160
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.00 E-value=0.00041 Score=64.73 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||||||||||++.|+...+.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p 55 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEEP 55 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCCC
Confidence 4689999999999999999999998653
No 161
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.00 E-value=0.00041 Score=64.78 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||||||||||++.|+...+.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p 63 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEEP 63 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 5689999999999999999999998653
No 162
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.98 E-value=0.00044 Score=62.94 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=24.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
++..++|+||||+|||||++.|+...
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 56999999999999999999999875
No 163
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.98 E-value=0.0004 Score=61.43 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+||+|||||||++.|+...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 45899999999999999999999864
No 164
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.97 E-value=0.00031 Score=60.15 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+.+++|+||+|||||||++.|+..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999999987
No 165
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.96 E-value=0.00039 Score=56.91 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.++.++|+||+|+|||||++.|+...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35899999999999999999998763
No 166
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.95 E-value=0.00037 Score=55.96 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
..|+|+|++|||||||+++|...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 167
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.94 E-value=0.00047 Score=67.50 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+|..++|+||||+|||||++.|...++
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 568999999999999999999998764
No 168
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.93 E-value=0.00054 Score=66.87 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=26.9
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 105 PMETLRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 105 ~~~~~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
|.+..+.+++|+||+|+|||||++.|+...+
T Consensus 20 ~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 20 PTPKNNTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp CCCCTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3455789999999999999999999998754
No 169
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.93 E-value=0.00046 Score=56.21 Aligned_cols=24 Identities=38% Similarity=0.490 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+.|+|+|++|||||||++.|++..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 369999999999999999999764
No 170
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.92 E-value=0.00038 Score=64.41 Aligned_cols=28 Identities=18% Similarity=0.408 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||||||||||++.|+...+.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p 52 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHVP 52 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCC
Confidence 5689999999999999999999998643
No 171
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.89 E-value=0.00056 Score=56.29 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=21.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.|+|+|++||||||+++.|++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998754
No 172
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.88 E-value=0.00047 Score=64.75 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||||||||||++.|+...+
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 569999999999999999999998764
No 173
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.88 E-value=0.00084 Score=54.45 Aligned_cols=38 Identities=26% Similarity=0.286 Sum_probs=27.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRP 148 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~ 148 (264)
+..|+|+|++|||||||+++|...... +....+.||+.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~-~~~~~~~~t~~ 41 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAA-IVTDIAGTTRD 41 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCS-CCCSSTTCCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcc-eeeCCCCceec
Confidence 367999999999999999999976421 12233445554
No 174
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.88 E-value=0.00034 Score=64.77 Aligned_cols=28 Identities=29% Similarity=0.516 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||||||||||++.|+...+.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p 57 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLDVP 57 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 5689999999999999999999998653
No 175
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.87 E-value=0.00071 Score=61.27 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+||+|||||||++.|+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999999764
No 176
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.87 E-value=0.00059 Score=60.59 Aligned_cols=26 Identities=35% Similarity=0.736 Sum_probs=24.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+.+++|+||+|||||||++.|+...|
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~p 55 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLLP 55 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCC
Confidence 58999999999999999999998764
No 177
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.87 E-value=0.00058 Score=57.57 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+..++|+||+|+|||||++.|+...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 3679999999999999999999865
No 178
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.85 E-value=0.00059 Score=56.90 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHh
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIA 132 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~ 132 (264)
.+|+|+||+||||||+++.|+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 179
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.85 E-value=0.00036 Score=58.26 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
++++|+|++|||||||+.+|+...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 689999999999999999999764
No 180
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.84 E-value=0.00066 Score=55.97 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+.+|+|+|++||||||+++.|++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3468999999999999999999986
No 181
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.84 E-value=0.00064 Score=61.24 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=24.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 108 TLRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 108 ~~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
..+.+|+|+||+|||||||++.|....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999999864
No 182
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.83 E-value=0.00038 Score=68.46 Aligned_cols=27 Identities=26% Similarity=0.541 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++..++|+||||+|||||++.|...++
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 569999999999999999999998864
No 183
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.82 E-value=0.00065 Score=56.50 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHh
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIA 132 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~ 132 (264)
..|+|+|++||||||+++.|++
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999998
No 184
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.80 E-value=0.00064 Score=66.55 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+|..++|+||||+|||||++.|....+
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 568999999999999999999998864
No 185
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.79 E-value=0.00046 Score=67.80 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+..++|+||||||||||++.|...++
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 569999999999999999999998765
No 186
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.78 E-value=0.00042 Score=57.96 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
...|+|+|.+|||||||+++|....
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4679999999999999999998764
No 187
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.76 E-value=0.00055 Score=58.72 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
++.+|+|.|++|||||||++.|...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 5689999999999999999999886
No 188
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.76 E-value=0.00059 Score=55.14 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+..++|+||+|+|||||++.|+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999999998764
No 189
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.75 E-value=0.00075 Score=60.01 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=28.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG 152 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g 152 (264)
..|+|+|++|||||||.++|..... +....+.+|..+..+
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~--~v~~~pg~tv~~~~~ 43 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQ--RVGNWPGVTVERKSG 43 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCC--CCCSSSCCCCSCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCC--cccCCCCCcEEEEEE
Confidence 4689999999999999999997542 222334556655443
No 190
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.74 E-value=0.0005 Score=67.28 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++..++|+||||+|||||++.|.+.++
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 569999999999999999999998764
No 191
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.73 E-value=0.00037 Score=57.75 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+..|+|+|++|||||||++.|....
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998654
No 192
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.72 E-value=0.001 Score=59.80 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 108 TLRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 108 ~~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
..+.+|+|+||||||||||++.|....+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3567999999999999999999987653
No 193
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.68 E-value=0.0018 Score=51.66 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+...|+|+|++|||||||+++|....
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34689999999999999999998753
No 194
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.68 E-value=0.00092 Score=60.43 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+||+||||||+++.|+...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999864
No 195
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.68 E-value=0.00063 Score=66.77 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
+|..++|+||||+|||||++.|....+.
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p 396 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLYDP 396 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 5689999999999999999999988653
No 196
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.67 E-value=0.0011 Score=55.25 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+.+++|+||+|+|||||++.|+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999998854
No 197
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.67 E-value=0.00081 Score=61.78 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=24.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
+..++|+||||+|||||++.|+..++.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 689999999999999999999998653
No 198
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.66 E-value=0.0011 Score=55.95 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHh
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIA 132 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~ 132 (264)
+.+|+|+|++||||||+++.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 199
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.66 E-value=0.00065 Score=72.51 Aligned_cols=64 Identities=20% Similarity=0.266 Sum_probs=42.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHHHHHHHH---HcCCcceeeeec
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHETMTSLI---SAGKMIEFGEYK 183 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~~f~~~i---~~~~flE~~~~~ 183 (264)
++..++|+||||||||||++.|...++. ..|+ ++|.+...++.......+ .++.++..++..
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~~-------------~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 481 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLYDP-------------LDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIA 481 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSSCC-------------SEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-------------CCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHH
Confidence 4699999999999999999999887642 2232 466666666665555432 344444445554
Q ss_pred Cc
Q psy14166 184 GH 185 (264)
Q Consensus 184 g~ 185 (264)
+|
T Consensus 482 eN 483 (1284)
T 3g5u_A 482 EN 483 (1284)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 200
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.66 E-value=0.0011 Score=54.67 Aligned_cols=24 Identities=50% Similarity=0.672 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
-.|+|+|++|||||||++.|....
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 378999999999999999999864
No 201
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.0014 Score=64.95 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=25.8
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 107 ETLRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 107 ~~~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+..+.+++|+||||+|||||++.|+...+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 44689999999999999999999998754
No 202
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.64 E-value=0.001 Score=54.91 Aligned_cols=24 Identities=50% Similarity=0.672 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
-.|+|+|++|||||||+++|....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999999863
No 203
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.62 E-value=0.0034 Score=59.11 Aligned_cols=57 Identities=23% Similarity=0.260 Sum_probs=35.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCHHHH
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSHETM 167 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~~~f 167 (264)
...|+|+|.+|||||||+++|...... .....+.||+..... +.+|..+.++|..-+
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~~~-~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~ 233 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEERV-IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGM 233 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTE-EEC---------CCEEEEETTEEEEETTHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCCce-eecCCCCceeeeeEEEEEECCeEEEEEECCCc
Confidence 357999999999999999999976421 133456788876432 346777888887665
No 204
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.61 E-value=0.00097 Score=60.93 Aligned_cols=28 Identities=18% Similarity=0.544 Sum_probs=24.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+..++|+||+|||||||++.|+...+.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 3589999999999999999999998654
No 205
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.61 E-value=0.0015 Score=51.12 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+.|+|+|++|||||||+++|....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999765
No 206
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.60 E-value=0.0011 Score=60.77 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
++.+++|+||+||||||+++.|+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999764
No 207
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.59 E-value=0.00094 Score=58.10 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=30.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVS 163 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs 163 (264)
-.|+|+|.+|||||||+|.|.......-......||+.+..+ +.+|..+.++|
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liD 76 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVD 76 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEE
Confidence 479999999999999999999875421111111255554322 23445555554
No 208
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.58 E-value=0.00066 Score=56.43 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+.++|+|+||||||||++.|+..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5899999999999999999998753
No 209
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.56 E-value=0.0015 Score=52.22 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+..++|+||+|+|||+|++.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998763
No 210
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.56 E-value=0.0017 Score=52.79 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
...|+|+|++|||||||+++|...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999876
No 211
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.56 E-value=0.001 Score=54.23 Aligned_cols=22 Identities=23% Similarity=0.635 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhc
Q psy14166 112 PVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
-|+|+|++|||||||+++|+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 212
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.55 E-value=0.0017 Score=55.48 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
...|+|+|++|||||||++.|.....
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCc
Confidence 35799999999999999999998653
No 213
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.55 E-value=0.0016 Score=55.78 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+..|+|+|++||||||+++.|++.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999999864
No 214
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.52 E-value=0.003 Score=59.75 Aligned_cols=56 Identities=20% Similarity=0.292 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCHHH
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSHET 166 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~~~ 166 (264)
...|+|+|.+|||||||.|+|...... .....+.+||....+ +..+..+..+|...
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G 80 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGG 80 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCC
Confidence 368999999999999999999876321 112345567665432 33455566665443
No 215
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.52 E-value=0.0014 Score=60.03 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+|+|+||||||||||++.|....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998764
No 216
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.51 E-value=0.0016 Score=56.47 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
..+|+|+|++||||||+++.|.+...
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35899999999999999999998643
No 217
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.51 E-value=0.0011 Score=61.48 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=24.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG 152 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g 152 (264)
+.|+|+|++|||||||+|.|..... .....+.||+.+..+
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~--~~~~~~~~T~d~~~~ 219 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQ--KVDTKLFTTMSPKRY 219 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCc--cccCCcccccCCEEE
Confidence 4599999999999999999997643 223445677766443
No 218
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.50 E-value=0.0016 Score=63.36 Aligned_cols=27 Identities=26% Similarity=0.307 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 569999999999999999999998764
No 219
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.49 E-value=0.0017 Score=52.31 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
..|+|+|++||||||+++.|++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999863
No 220
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.49 E-value=0.0027 Score=51.30 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
--|+|+|++|||||||++.|...++.
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHHhhccc
Confidence 46899999999999999988876654
No 221
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.46 E-value=0.0019 Score=53.74 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHh
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIA 132 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~ 132 (264)
.+.+++|+||+|+|||||+..|+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999987
No 222
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.46 E-value=0.0019 Score=58.16 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=29.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKK 150 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r 150 (264)
..-.|+|+|.+|||||||+|+|...... .....+.|||...
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~-i~s~~~~tT~~~~ 49 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVS-IISPKAGTTRMRV 49 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCS-CCCSSSCCCCSCE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCcc-ccCCCCCceeeEE
Confidence 4468999999999999999999976421 1233456777643
No 223
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.46 E-value=0.0019 Score=54.61 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+.+++|+||+|+|||||+..|+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5689999999999999999999874
No 224
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.45 E-value=0.0016 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
..|+|+|++|||||||+++|...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999875
No 225
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.45 E-value=0.0036 Score=50.50 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
..|+|+|++|||||||+++|....
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 579999999999999999999765
No 226
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.45 E-value=0.0019 Score=54.00 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.++.++|.||+|+|||+|++.|+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999875
No 227
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.0016 Score=62.30 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+||+|||||||++.|+...
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 56899999999999999999999875
No 228
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.42 E-value=0.0016 Score=60.41 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+||+||||||+++.|+...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 56899999999999999999999864
No 229
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.41 E-value=0.0014 Score=62.37 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.9
Q ss_pred CCCe--EEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRP--VVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~--ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.|.+ ++|+||||+|||||++.|++..
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 4578 9999999999999999999873
No 230
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.41 E-value=0.0019 Score=56.49 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+.+|+|+||+|||||||++.|++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998764
No 231
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.41 E-value=0.0017 Score=55.91 Aligned_cols=27 Identities=33% Similarity=0.445 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.++.|+|+||||+|||||+..|++...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 357899999999999999999998754
No 232
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.41 E-value=0.0038 Score=58.72 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=31.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCHHHH
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSHETM 167 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~~~f 167 (264)
..|+|+|.+|||||||.|+|...... .....+.+||....+ +.+|..+.++|...+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~ 61 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI 61 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC----
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCC
Confidence 47999999999999999999876432 123456677765432 345666777775544
No 233
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.40 E-value=0.0015 Score=59.12 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
++++|+|++|||||||++.|....
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 589999999999999999999875
No 234
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.39 E-value=0.0022 Score=53.03 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
++|+|+|++||||||+++.|++..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 389999999999999999999863
No 235
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.39 E-value=0.0017 Score=60.20 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+..++|+||+|||||||++.|+...+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 458999999999999999999998643
No 236
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.39 E-value=0.0019 Score=57.04 Aligned_cols=26 Identities=19% Similarity=0.205 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+||+|+|||||++.|+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999988763
No 237
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.38 E-value=0.001 Score=59.73 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=27.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPK 149 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~ 149 (264)
..|+|+|++|||||||+++|...... .....+.|||..
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~-i~s~~~~tTr~~ 46 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKIS-ITSRKAQTTRHR 46 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEE-ECCCCSSCCSSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcc-ccCCCCCcceee
Confidence 58999999999999999999976311 012235577754
No 238
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.38 E-value=0.0022 Score=54.21 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=24.7
Q ss_pred hhhcCCCCCCCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 100 VAKLYPMETLRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 100 v~~~~~~~~~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
+.++|+.......|+|+|++|||||||+++|...
T Consensus 19 ~~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 19 FQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp ---CCSCCTTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred eccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3344443334568999999999999999999865
No 239
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.37 E-value=0.0019 Score=59.17 Aligned_cols=25 Identities=32% Similarity=0.309 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+.+++|+||+|||||||++.|+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5689999999999999999999865
No 240
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.35 E-value=0.0024 Score=59.98 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG 152 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g 152 (264)
.+..++|+|++|||||||.|.|...... -....|.||+.|..|
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a-~~~~~p~tTi~p~~G 61 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLG-NPANYPYATIDPEEA 61 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTT-STTCCSSCCCCTTEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcc-cccCCCceeecceee
Confidence 4579999999999999999999985421 123346677777654
No 241
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.35 E-value=0.0018 Score=51.86 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
...++|+||+|+|||+|++.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999998764
No 242
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.34 E-value=0.002 Score=52.47 Aligned_cols=24 Identities=17% Similarity=0.403 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+|+||+|+|||||++.|.-..
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 399999999999999999987653
No 243
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.34 E-value=0.0021 Score=50.16 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
-|+|+|++|||||||+++|....
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998653
No 244
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.33 E-value=0.002 Score=59.69 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+.+++|+||+|||||||++.|+...
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3699999999999999999998764
No 245
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.32 E-value=0.0029 Score=58.11 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
+..|+|+|++|||||||+|.|...
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 578999999999999999999974
No 246
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.31 E-value=0.0023 Score=50.32 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
--|+|+|++|||||||+++|....
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998753
No 247
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.31 E-value=0.0022 Score=62.51 Aligned_cols=28 Identities=21% Similarity=0.472 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+.+++|+||+|||||||++.|+...+.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p 320 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEITA 320 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5799999999999999999999987643
No 248
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.30 E-value=0.0021 Score=51.01 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
--|+|+|++|||||||+++|....
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 368999999999999999998653
No 249
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.0012 Score=61.86 Aligned_cols=53 Identities=23% Similarity=0.355 Sum_probs=40.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCHH
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSHE 165 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~~ 165 (264)
-.|+|+|.++||||||.|.|....+. ....|.||+.|-.|. .+|..+.|+|-.
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~--v~~~pftT~~~~~g~~~~~~~~i~l~D~p 127 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESE--AAEYEFTTLVTVPGVIRYKGAKIQMLDLP 127 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCC--GGGTCSSCCCEEEEEEEETTEEEEEEECG
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCc--ccCCCCceeeeeeEEEEeCCcEEEEEeCC
Confidence 47999999999999999999987653 345678999886653 345556666543
No 250
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.28 E-value=0.0024 Score=50.81 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
..-|+|+|++|||||||+++|...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357899999999999999999876
No 251
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.28 E-value=0.0022 Score=60.59 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
..++|+||+|||||||+|.|....+
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~ 94 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGN 94 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3899999999999999999998654
No 252
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.28 E-value=0.0021 Score=62.28 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.+++|+||+|||||||++.|+...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 56899999999999999999999764
No 253
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.27 E-value=0.0025 Score=63.01 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=25.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 108 TLRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 108 ~~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
..+.+++|+||+|+|||||++.|+...+
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 3679999999999999999999998754
No 254
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.27 E-value=0.0024 Score=57.91 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
..++|+||+|+|||||++.|+...
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 679999999999999999999874
No 255
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.26 E-value=0.0024 Score=56.61 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
-++|+||+|+|||||++.|+....
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHcC
Confidence 399999999999999999998754
No 256
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.24 E-value=0.0027 Score=54.65 Aligned_cols=25 Identities=36% Similarity=0.725 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+-++|+||+|+|||||++.|+....
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3499999999999999999998754
No 257
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.24 E-value=0.0029 Score=52.41 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+.++|.||+|+|||+|++.|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998753
No 258
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.24 E-value=0.0031 Score=56.68 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=27.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPK 149 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~ 149 (264)
..|+|+|.+|||||||+|+|...... .....+.|||..
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~-ivs~~~~tTr~~ 45 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVA-PISPRPQTTRKR 45 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCS-CCCSSSCCCCSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eecCCCCceeEE
Confidence 46999999999999999999976421 112345677754
No 259
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.23 E-value=0.0025 Score=49.61 Aligned_cols=22 Identities=41% Similarity=0.702 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhc
Q psy14166 112 PVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.|+|+|++|||||||++.|...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 260
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.23 E-value=0.0027 Score=54.72 Aligned_cols=25 Identities=24% Similarity=0.612 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+.++|+||+|+|||||++.|+....
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999998743
No 261
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.22 E-value=0.0027 Score=49.83 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
-|+|+|++|||||||+++|....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 262
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.21 E-value=0.003 Score=61.51 Aligned_cols=28 Identities=18% Similarity=0.536 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
++.+++|+||+|+|||||++.|+...+.
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p 338 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEP 338 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5699999999999999999999998653
No 263
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.21 E-value=0.0027 Score=49.98 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhc
Q psy14166 112 PVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
-|+|+|++|||||||+++|...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999875
No 264
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.21 E-value=0.0028 Score=49.55 Aligned_cols=24 Identities=29% Similarity=0.635 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.-|+|+|++|||||||+++|....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999998753
No 265
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.19 E-value=0.003 Score=59.03 Aligned_cols=26 Identities=27% Similarity=0.430 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.++.++|+||+|+|||||++.|+...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 46899999999999999999999764
No 266
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.19 E-value=0.0029 Score=49.82 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
--|+|+|++|||||||+++|....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998764
No 267
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.18 E-value=0.0029 Score=49.60 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhc
Q psy14166 112 PVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
-|+|+|++|||||||+++|...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999875
No 268
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.18 E-value=0.0027 Score=49.94 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
-|+|+|++|||||||+++|....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 269
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.18 E-value=0.0032 Score=54.05 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
+..|+|.|++||||||+++.|.+..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~ 28 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 578999999999999999999988753
No 270
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.17 E-value=0.0027 Score=50.13 Aligned_cols=22 Identities=45% Similarity=0.691 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhc
Q psy14166 112 PVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
-|+|+|++|||||||+++|...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999854
No 271
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.17 E-value=0.0029 Score=50.34 Aligned_cols=24 Identities=38% Similarity=0.643 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
--|+|+|++|||||||+++|....
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 272
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.0036 Score=50.84 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
...|+|+|++|||||||++.|....
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999999764
No 273
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.17 E-value=0.0024 Score=60.45 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|||||||++.|+...+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 457999999999999999999988743
No 274
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.17 E-value=0.0032 Score=62.30 Aligned_cols=27 Identities=19% Similarity=0.565 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|+...+
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 568999999999999999999998764
No 275
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.16 E-value=0.003 Score=50.31 Aligned_cols=24 Identities=33% Similarity=0.634 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
-.|+|+|++|||||||+++|....
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999998753
No 276
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.15 E-value=0.0015 Score=57.31 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+.|+|+|.+|||||||.+.|....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 468999999999999999998764
No 277
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.15 E-value=0.003 Score=49.80 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999965
No 278
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.15 E-value=0.003 Score=61.25 Aligned_cols=28 Identities=11% Similarity=0.357 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.+..++|+||+|||||||++.|+...+.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 3578999999999999999999988654
No 279
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.15 E-value=0.003 Score=53.25 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
+.+|+|+|++||||||+++.|.+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999986
No 280
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.12 E-value=0.0032 Score=49.37 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999865
No 281
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.12 E-value=0.0034 Score=55.16 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
++.+++|+||+|+|||||+..|+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 5689999999999999999988864
No 282
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.12 E-value=0.0023 Score=60.26 Aligned_cols=53 Identities=25% Similarity=0.357 Sum_probs=29.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCH
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSH 164 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~ 164 (264)
+.|+|+|.+|||||||.|+|...... +....+.+||....+ +.+|..+.++|.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT 56 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKA-IVEDEEGVTRDPVQDTVEWYGKTFKLVDT 56 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc-eecCCCCCccceeeEEEEECCeEEEEEEC
Confidence 46999999999999999999976421 223456778876543 234555555543
No 283
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.11 E-value=0.0033 Score=59.78 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++..++|+||||||||||++.|+...+
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 679999999999999999999998754
No 284
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.0036 Score=61.97 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
+.+++|+||+|+|||||++.|+...+.
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSSCC
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 478999999999999999999988643
No 285
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=96.10 E-value=0.0039 Score=61.55 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=30.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG 152 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g 152 (264)
..|+|+|++|||||||+|.|.+... +..+++||+....+
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~~---~~~~~~tt~~~T~g 77 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKKK---GFSLGSTVQSHTKG 77 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSS---CSCCCCSSSCCCCS
T ss_pred cEEEEECCCCCCHHHHHHhHcCCCC---ccccCCCCCCceeE
Confidence 5789999999999999999998743 22667777765443
No 286
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.10 E-value=0.0033 Score=50.71 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
-.|+|+|++|||||||+++|....
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999999763
No 287
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.10 E-value=0.0037 Score=51.53 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
..++|.||+|+|||||++.++...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998763
No 288
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.10 E-value=0.0033 Score=50.46 Aligned_cols=23 Identities=39% Similarity=0.678 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
-|+|+|++|||||||+++|....
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 289
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.09 E-value=0.0029 Score=49.80 Aligned_cols=23 Identities=39% Similarity=0.704 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
-|+|+|++|||||||+++|....
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 58999999999999999997543
No 290
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.09 E-value=0.0034 Score=50.44 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 291
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.09 E-value=0.0035 Score=49.23 Aligned_cols=23 Identities=13% Similarity=0.387 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
-|+|+|++|||||||+++|....
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998653
No 292
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.08 E-value=0.0033 Score=54.35 Aligned_cols=25 Identities=20% Similarity=0.505 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
...|+|+|.+|||||||+++|+...
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999999754
No 293
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.07 E-value=0.0034 Score=57.81 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++..+.|+||+|+|||||++.|+....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 579999999999999999999998753
No 294
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.05 E-value=0.0047 Score=50.18 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
....|+|+|++|||||||+++|...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999865
No 295
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.05 E-value=0.0037 Score=49.32 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
..|+|+|++|||||||+++|....
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999998653
No 296
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.04 E-value=0.0039 Score=49.64 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999865
No 297
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.04 E-value=0.0041 Score=54.46 Aligned_cols=25 Identities=36% Similarity=0.725 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+-++|+||+|+|||||++.|+....
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECCCcChHHHHHHHHHHHcC
Confidence 3499999999999999999998754
No 298
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.04 E-value=0.0042 Score=53.11 Aligned_cols=26 Identities=23% Similarity=0.540 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++.++|.||+|+|||+|++.|+....
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998643
No 299
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.03 E-value=0.0044 Score=54.43 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++.++|.||+|+|||+|++.|+....
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 47999999999999999999998764
No 300
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.03 E-value=0.015 Score=55.83 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.++|.||+|+|||+|++.|+...
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3799999999999999999999875
No 301
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.03 E-value=0.0045 Score=54.62 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=24.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKK 150 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r 150 (264)
..++|+|.+|||||||+|.|....... ...+++||+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~ 138 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQ 138 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceE
Confidence 379999999999999999999765422 245667777653
No 302
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.02 E-value=0.0029 Score=50.35 Aligned_cols=23 Identities=39% Similarity=0.561 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|...
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999865
No 303
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.02 E-value=0.0038 Score=50.80 Aligned_cols=24 Identities=46% Similarity=0.666 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
--|+|+|++|||||||+++|....
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 304
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.01 E-value=0.0036 Score=49.63 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999865
No 305
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.01 E-value=0.0032 Score=50.66 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
-|+|+|++|||||||+++|....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999998753
No 306
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.99 E-value=0.0039 Score=51.00 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|+..
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999875
No 307
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.99 E-value=0.0027 Score=57.03 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhc
Q psy14166 112 PVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
-|+|+||+|||||||++.|...
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4699999999999999998764
No 308
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.99 E-value=0.0028 Score=51.54 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
....|+|+|.+|||||||+++|....
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999998653
No 309
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.97 E-value=0.0049 Score=53.70 Aligned_cols=27 Identities=22% Similarity=0.506 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
++.++|.||+|+|||+|++.|+.....
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~~ 77 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETNA 77 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTTC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 478999999999999999999987643
No 310
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.97 E-value=0.0034 Score=59.38 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
-|+|+|+||||||||++.|+...
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36999999999999999999864
No 311
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.96 E-value=0.0048 Score=54.99 Aligned_cols=26 Identities=23% Similarity=0.485 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++.++|.||+|+|||+|++.|+....
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhC
Confidence 47899999999999999999998754
No 312
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.96 E-value=0.0051 Score=54.79 Aligned_cols=26 Identities=15% Similarity=0.058 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.++.++|.||+|+|||+|++.|+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678888999999999999999874
No 313
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.96 E-value=0.0029 Score=55.09 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++.+|+|.|++||||||+++.|++...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 447999999999999999999998864
No 314
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.96 E-value=0.0027 Score=51.94 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
--|+|+|++|||||||+++|....
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998764
No 315
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.96 E-value=0.0041 Score=51.27 Aligned_cols=23 Identities=43% Similarity=0.650 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|.+|||||||+++|...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 316
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.95 E-value=0.0043 Score=49.47 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
--|+|+|++|||||||+++|....
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999998764
No 317
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.95 E-value=0.0047 Score=55.13 Aligned_cols=40 Identities=28% Similarity=0.294 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKK 150 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r 150 (264)
+-.++|+|.||||||||+|.|...... -....+.||+...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~-~~~~~~g~T~~~~ 159 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIA-KTGDRPGITTSQQ 159 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC-------------C
T ss_pred CceEEEEecCCCchHHHHHHHhcCcee-ecCCCCCeeeeeE
Confidence 357999999999999999999976432 2235677887654
No 318
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.94 E-value=0.0044 Score=55.71 Aligned_cols=26 Identities=27% Similarity=0.546 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+++++|+||+||||||++..|+...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999998764
No 319
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.94 E-value=0.0044 Score=49.13 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.-|+|+|++|||||||+++|....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 478999999999999999998753
No 320
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.93 E-value=0.0044 Score=49.50 Aligned_cols=24 Identities=29% Similarity=0.635 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
..|+|+|++|||||||+++|....
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 468999999999999999999753
No 321
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.92 E-value=0.0044 Score=50.15 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
-.|+|+|.+|||||||++.|...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999875
No 322
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.92 E-value=0.0052 Score=57.82 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG 152 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g 152 (264)
.+..|+|+|++|||||||.|.|..... -....|.||..|..+
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~--~~~~~p~tTi~p~~g 62 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQA--SAENFPFCTIDPNES 62 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC---------------CCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc--cccCCCccccCceeE
Confidence 346799999999999999999997642 122345667666443
No 323
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.92 E-value=0.0044 Score=51.70 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+.|+|+|++|||||||+++|+..
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999876
No 324
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.91 E-value=0.0054 Score=48.60 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
...|+|.||+|+|||+|++.|....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3689999999999999999998764
No 325
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.91 E-value=0.0066 Score=49.82 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.--|+|+|.+|||||||++.|...+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcC
Confidence 3579999999999999999888754
No 326
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.90 E-value=0.0045 Score=50.56 Aligned_cols=24 Identities=29% Similarity=0.635 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.-|+|+|++|||||||+++|....
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998653
No 327
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.90 E-value=0.0038 Score=60.19 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=22.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+++|+||||||||||++.|+...+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 6999999999999999999998743
No 328
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.90 E-value=0.0046 Score=49.34 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
--|+|+|++|||||||+++|....
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 329
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.89 E-value=0.0043 Score=50.30 Aligned_cols=24 Identities=42% Similarity=0.497 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
--|+|+|++|||||||+++|....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999999753
No 330
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.89 E-value=0.0057 Score=50.82 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
...|+|+|++|||||||+++|....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999999764
No 331
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.88 E-value=0.0052 Score=50.18 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
..++|.||+|+|||+|++.++..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999875
No 332
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.88 E-value=0.0093 Score=56.74 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
...++|+||+|+|||+|++.|+...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998763
No 333
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.87 E-value=0.0045 Score=50.16 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 334
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.85 E-value=0.0048 Score=49.53 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999865
No 335
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.85 E-value=0.0044 Score=49.76 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
--|+|+|++|||||||+++|....
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 336
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.85 E-value=0.005 Score=49.22 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhc
Q psy14166 112 PVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
-|+|+|++|||||||+++|...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 337
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.85 E-value=0.0052 Score=51.85 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+.+++|+||+|+|||||+..++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999998777643
No 338
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.83 E-value=0.0085 Score=54.77 Aligned_cols=39 Identities=33% Similarity=0.484 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPK 149 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~ 149 (264)
....|+|+|++|||||||++.|....+. ....+.+|+..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~--~~~~~~~t~~~ 204 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPE--IASYPFTTRGI 204 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCE--EECCTTCSSCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCeeece
Confidence 3468999999999999999999876531 12345566544
No 339
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.82 E-value=0.0051 Score=49.91 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
--|+|+|++|||||||+++|....
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998753
No 340
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.82 E-value=0.0051 Score=50.39 Aligned_cols=24 Identities=29% Similarity=0.612 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
-.|+|+|++|||||||+++|....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 478999999999999999998763
No 341
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=95.81 E-value=0.0029 Score=60.79 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=28.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCHHHHH
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSHETMT 168 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~~~f~ 168 (264)
-.|+|+|++|||||||+|+|..... .+....+.|||..... ..+|..+.++|..-+.
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~-a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~ 292 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQER-AIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLR 292 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC-----
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCceEEEEEEEEEECCeEEEEEECCCCC
Confidence 3599999999999999999987632 1334567788876543 3567778888876654
No 342
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.81 E-value=0.0048 Score=49.44 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
..|+|+|++|||||||+++|...
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 57899999999999999999854
No 343
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.81 E-value=0.0052 Score=54.86 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+..++|.||+|+|||||++.|+...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 35789999999999999999998753
No 344
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.79 E-value=0.005 Score=50.48 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
..|+|+|++|||||||+++|....
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~ 47 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDR 47 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999753
No 345
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.78 E-value=0.0051 Score=49.98 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|...
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 57899999999999999999875
No 346
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.78 E-value=0.0041 Score=49.72 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
--|+|+|++|||||||+++|....
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999999753
No 347
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.77 E-value=0.0055 Score=49.73 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.-|+|+|++|||||||+++|...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999999865
No 348
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.76 E-value=0.0054 Score=50.25 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
--|+|+|++|||||||+++|....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998753
No 349
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.75 E-value=0.0058 Score=51.16 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
...|+|+|.+|||||||+++|+..
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368899999999999999999976
No 350
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.75 E-value=0.0048 Score=49.83 Aligned_cols=25 Identities=12% Similarity=0.380 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.-.|+|+|++|||||||+++|....
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999998753
No 351
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.75 E-value=0.009 Score=55.55 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=28.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG 152 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g 152 (264)
..|+|+|.+|||||||.|+|..... .....|.||..|..+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~--~v~~~p~tTi~p~~g 42 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGI--EAANYPFCTIEPNTG 42 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--cccCCCCceECceEE
Confidence 4689999999999999999998642 123345677776544
No 352
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.74 E-value=0.0057 Score=49.93 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 46899999999999999999875
No 353
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.74 E-value=0.0055 Score=49.94 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
--|+|+|++|||||||+++|....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 368999999999999999999764
No 354
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.73 E-value=0.0059 Score=49.30 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
-.|+|+|++|||||||+++|....
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 478999999999999999998763
No 355
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.73 E-value=0.0059 Score=49.73 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
--|+|+|++|||||||+++|....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999998753
No 356
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.73 E-value=0.0069 Score=53.28 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+..++|.||+|+|||+|++.|+...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999887653
No 357
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.73 E-value=0.006 Score=48.67 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999865
No 358
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.72 E-value=0.0052 Score=49.56 Aligned_cols=25 Identities=12% Similarity=0.404 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.-.|+|+|++|||||||+++|....
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999998654
No 359
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.72 E-value=0.0058 Score=55.33 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+++|+|+||+||||||++..|+...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 46799999999999999999998764
No 360
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.72 E-value=0.0044 Score=49.63 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
....|+|+|++|||||||+++|...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999743
No 361
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.72 E-value=0.0032 Score=55.57 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
-.|+|+|.+|||||||.|+|....
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998764
No 362
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.72 E-value=0.0035 Score=62.23 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHH
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLI 131 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~ 131 (264)
.+.+++|+||||||||||++.|+
T Consensus 347 ~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 347 LGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTSEEEEECSTTSSHHHHHTTTH
T ss_pred CCCEEEEEeeCCCCHHHHHHHHH
Confidence 46899999999999999997653
No 363
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.71 E-value=0.0052 Score=50.05 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
--|+|+|++|||||||+++|....
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 364
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.71 E-value=0.0056 Score=50.37 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.-|+|+|++|||||||+++|....
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 578999999999999999999764
No 365
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.70 E-value=0.0059 Score=65.21 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
+|..++|+||||+|||||++.|...++.
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~~p 1085 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLERFYDP 1085 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 5689999999999999999999988643
No 366
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.69 E-value=0.0057 Score=50.33 Aligned_cols=24 Identities=42% Similarity=0.480 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
--|+|+|++|||||||+++|....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 367
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.68 E-value=0.0062 Score=49.81 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
--|+|+|++|||||||+++|....
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 579999999999999999999753
No 368
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.68 E-value=0.0039 Score=51.58 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
..|+|+|++|||||||+++|...
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999754
No 369
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.66 E-value=0.0065 Score=53.13 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
..|+|+|++|||||||.++|....
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999998764
No 370
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.66 E-value=0.0065 Score=49.50 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
--|+|+|++|||||||+++|....
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998763
No 371
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.66 E-value=0.0065 Score=49.91 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
--|+|+|++|||||||+++|....
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 579999999999999999998753
No 372
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.64 E-value=0.007 Score=52.86 Aligned_cols=26 Identities=42% Similarity=0.898 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+..++|.||+|+|||+|++.|+....
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998754
No 373
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.62 E-value=0.0068 Score=49.86 Aligned_cols=24 Identities=42% Similarity=0.603 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.-|+|+|++|||||||+++|....
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 578999999999999999998653
No 374
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.60 E-value=0.0065 Score=49.22 Aligned_cols=24 Identities=13% Similarity=0.358 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.-.|+|+|++|||||||+++|...
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999964
No 375
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.60 E-value=0.0073 Score=48.60 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHh
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIA 132 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~ 132 (264)
.+.+|+||+|+|||||+..|.-
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998763
No 376
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.59 E-value=0.0068 Score=54.26 Aligned_cols=26 Identities=12% Similarity=0.310 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+..++|+||+|+|||||++.++...
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998753
No 377
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.59 E-value=0.0088 Score=52.53 Aligned_cols=24 Identities=38% Similarity=0.731 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
..++|+||+|+|||+|++.|+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 489999999999999999998864
No 378
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=95.58 E-value=0.0051 Score=56.95 Aligned_cols=42 Identities=29% Similarity=0.263 Sum_probs=27.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCC----C-ccccccccCCCCCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPD----K-FTQVTPYTTRPKKP 151 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~----~-f~~~v~~TTR~~r~ 151 (264)
++.++++|.+|||||||.|.|...... . -....++||+....
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~ 206 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID 206 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE
Confidence 368999999999999999999986311 1 12345678877543
No 379
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.57 E-value=0.0067 Score=50.59 Aligned_cols=23 Identities=43% Similarity=0.635 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999875
No 380
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.57 E-value=0.0072 Score=50.03 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
..|+|+|++|||||||+++|....
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999998753
No 381
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.57 E-value=0.0051 Score=50.84 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
-.|+|+|++|||||||+++|...
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 47899999999999999999754
No 382
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=95.57 E-value=0.0023 Score=61.62 Aligned_cols=53 Identities=30% Similarity=0.391 Sum_probs=38.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCCcceeecCH
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDGKEYHFVSH 164 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G~dY~fvs~ 164 (264)
-.|+|+|.+|||||||+|+|...... +....+.|||.+.... .+|..+.++|.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a-~vs~~~gTT~d~~~~~i~~~g~~~~l~DT 298 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRA-IVTDIPGTTRDVISEEIVIRGILFRIVDT 298 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBC-CCCCSSCCSSCSCCEEEEETTEEEEEEES
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCC-ccCCCCCeeeeeEEEEEecCCeEEEEEEC
Confidence 46999999999999999999987421 3345678898875432 34555555543
No 383
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.56 E-value=0.0063 Score=50.21 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 384
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=95.55 E-value=0.0063 Score=57.51 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=28.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKK 150 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r 150 (264)
+..|+|+|++|||||||++.|....|. ....+.||..|.
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~--i~~~~ftTl~p~ 195 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPK--IAPYPFTTLSPN 195 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCE--ECCCTTCSSCCE
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCcc--ccCcccceecce
Confidence 357999999999999999999887652 122344555553
No 385
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.54 E-value=0.0057 Score=50.04 Aligned_cols=22 Identities=36% Similarity=0.693 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhc
Q psy14166 112 PVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
-|+|+|++|||||||+++|...
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 386
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.53 E-value=0.011 Score=54.06 Aligned_cols=23 Identities=13% Similarity=0.407 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
..|+|+|++|||||||++.|...
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999985
No 387
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.53 E-value=0.0063 Score=59.05 Aligned_cols=27 Identities=22% Similarity=0.119 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+..|+|+|.||||||||++.|++...
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999998854
No 388
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.50 E-value=0.0073 Score=50.42 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999975
No 389
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.47 E-value=0.008 Score=54.21 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++.++|.||+|+|||+|++.|+....
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 47999999999999999999998743
No 390
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.47 E-value=0.0084 Score=58.24 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+..++|+||||+|||||++.|+....
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 568999999999999999999998754
No 391
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.46 E-value=0.0072 Score=52.56 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
....++|.||+|+|||+|++.|+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34689999999999999999999864
No 392
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.46 E-value=0.0077 Score=49.85 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.-|+|+|++|||||||+++|....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC
Confidence 479999999999999999999753
No 393
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.46 E-value=0.0078 Score=49.21 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|...
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999864
No 394
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.46 E-value=0.008 Score=57.94 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=20.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHH
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRL 130 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L 130 (264)
++.+++|+||+|||||||++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 5689999999999999999994
No 395
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.45 E-value=0.0077 Score=49.96 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999865
No 396
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.44 E-value=0.01 Score=54.06 Aligned_cols=26 Identities=35% Similarity=0.635 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+..++|.||+|+|||+|++.|+....
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 47899999999999999999998753
No 397
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.43 E-value=0.0095 Score=53.78 Aligned_cols=25 Identities=32% Similarity=0.609 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
++.|+|.||+|+|||+|++.|+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 4789999999999999999999875
No 398
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.43 E-value=0.0074 Score=56.11 Aligned_cols=37 Identities=27% Similarity=0.359 Sum_probs=26.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKK 150 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r 150 (264)
.|+|+|++|||||||.+.|....+. ....+.||..|.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~~~--v~~~p~~Ti~pn 39 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRANAL--AANYPFATIDKN 39 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHHTT--CSSCCGGGGSTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCc--ccCCCCceeccc
Confidence 5899999999999999999986431 122344555543
No 399
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.42 E-value=0.0077 Score=55.27 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+.++.|+||+|+|||||++.|+...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999998775
No 400
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.42 E-value=0.0047 Score=49.58 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=9.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|...
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999854
No 401
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.42 E-value=0.012 Score=54.36 Aligned_cols=42 Identities=26% Similarity=0.210 Sum_probs=30.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC----CCCccccccccCCCCCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD----PDKFTQVTPYTTRPKKP 151 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~----p~~f~~~v~~TTR~~r~ 151 (264)
++.++++|.+|+|||||.|.|.... ........+.||+....
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~ 207 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIE 207 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEE
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEE
Confidence 3689999999999999999999861 11123346678877543
No 402
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.40 E-value=0.0093 Score=53.70 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+.++|+||+|+|||||++.++....
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHh
Confidence 3899999999999999999987643
No 403
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.39 E-value=0.0057 Score=49.68 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
-.|+|+|++|||||||+++|....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999998653
No 404
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.39 E-value=0.0085 Score=50.86 Aligned_cols=23 Identities=43% Similarity=0.650 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
-.|+|+|.+|||||||+++|...
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999854
No 405
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.37 E-value=0.011 Score=52.35 Aligned_cols=24 Identities=21% Similarity=0.527 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
..|+|+|.+|||||||+|.|+...
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 579999999999999999999763
No 406
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.36 E-value=0.0088 Score=48.60 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999975
No 407
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.35 E-value=0.01 Score=50.12 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.++-|+|.|+||+|||||+-.|+..
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4578999999999999999999985
No 408
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.33 E-value=0.0091 Score=62.18 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHh
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIA 132 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~ 132 (264)
.|.+++|+||+|+|||||++.|++
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 568999999999999999999984
No 409
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.33 E-value=0.012 Score=52.59 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
...++|.||+|+|||+|++.|+.....
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~ 81 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSA 81 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCC
Confidence 367999999999999999999887543
No 410
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.33 E-value=0.028 Score=53.08 Aligned_cols=57 Identities=23% Similarity=0.267 Sum_probs=36.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC--CCCCcceeecCHHHH
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG--EEDGKEYHFVSHETM 167 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g--E~~G~dY~fvs~~~f 167 (264)
...|+|+|.+|||||||+++|..... .+....+.||+..... +.+|..+.++|..-+
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~ 253 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGM 253 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTT-EEECC------CTTSEEEEETTEEEEETTGGGT
T ss_pred cceeEEecCCCCCHHHHHHHHhCCCc-cccCCCCCeEEEEEEEEEEECCceEEEEECCCC
Confidence 45789999999999999999996542 1234456677776433 345677777776553
No 411
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.29 E-value=0.01 Score=53.47 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhc
Q psy14166 113 VVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 113 ivLiGpsGvGKsTL~~~L~~~ 133 (264)
++|+||+|+||||+++.|+..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999886
No 412
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.28 E-value=0.0057 Score=60.34 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+.++|+||+|||||||++.|++..
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 359999999999999999999875
No 413
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.28 E-value=0.0092 Score=49.82 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|...
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 414
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.27 E-value=0.0077 Score=52.82 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
-.|+|+|.+|+|||||+|.|....
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999987653
No 415
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.27 E-value=0.0048 Score=53.31 Aligned_cols=24 Identities=29% Similarity=0.649 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+.++|.||+|+|||+|++.|+...
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 568999999999999999999864
No 416
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.27 E-value=0.0057 Score=63.70 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.+++|+||+|+|||||++.|.+..+
T Consensus 698 ~GeivaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 698 LSSRIAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp TTCEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 568999999999999999999998764
No 417
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.26 E-value=0.01 Score=49.76 Aligned_cols=24 Identities=46% Similarity=0.671 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
--|+|+|++|||||||+++|....
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999998753
No 418
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.24 E-value=0.01 Score=48.89 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.-|+|+|.+|||||||+++|....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999999753
No 419
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.24 E-value=0.011 Score=53.88 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+..|+|+|++|+|||||++.|+..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999864
No 420
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.24 E-value=0.0089 Score=53.58 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+..++|+||+|+|||+|++.++...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998764
No 421
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.24 E-value=0.01 Score=49.07 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
--|+|+|++|||||||+++|....
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhhCC
Confidence 368999999999999999998653
No 422
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.23 E-value=0.0094 Score=48.90 Aligned_cols=23 Identities=13% Similarity=0.323 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
-.|+|+|++|||||||+++|...
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999754
No 423
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.23 E-value=0.011 Score=49.54 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|...
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999875
No 424
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.20 E-value=0.0091 Score=55.90 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCC
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPG 152 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~g 152 (264)
.|+|+|.+|||||||.|+|..... .....|.||+.+..+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~--~~~~~p~tT~~~~~g 40 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDV--EIANYPFTTIEANVG 40 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC----------------CCEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC--cccCCCCcccCCceE
Confidence 489999999999999999987642 122345566655433
No 425
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.20 E-value=0.011 Score=55.50 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHH
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLI 131 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~ 131 (264)
.+.+++|+||||+|||||+..|+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHH
Confidence 57899999999999999999765
No 426
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.19 E-value=0.012 Score=52.68 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++-++|.||+|+|||+|++.|+....
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 36799999999999999999998743
No 427
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.18 E-value=0.013 Score=52.81 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
++.++|.||+|+|||+|+..|+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999998865
No 428
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.18 E-value=0.011 Score=54.60 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHH
Q psy14166 111 RPVVLIGPSGVGRSELKRRLI 131 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~ 131 (264)
.+++|+||+|+|||||++.|.
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999987
No 429
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.17 E-value=0.011 Score=48.84 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|...
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999865
No 430
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.16 E-value=0.016 Score=50.55 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
..|+|+|.+|+|||||++.|....
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999999754
No 431
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.16 E-value=0.011 Score=48.94 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|...
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 57899999999999999999864
No 432
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.14 E-value=0.013 Score=50.53 Aligned_cols=25 Identities=36% Similarity=0.705 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
..|+|.||+|+|||+|++.|....+
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcC
Confidence 6899999999999999999988654
No 433
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.12 E-value=0.0061 Score=48.26 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
...|+|.||+|+|||++++.|....
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCcEEEECCCCccHHHHHHHHHHhC
Confidence 3679999999999999998887653
No 434
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.12 E-value=0.015 Score=53.17 Aligned_cols=26 Identities=27% Similarity=0.561 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
...++|+||+|+|||+|++.|+....
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 36799999999999999999998764
No 435
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.11 E-value=0.017 Score=51.61 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.-|+|+|.+|||||||.++|....
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 568999999999999999998764
No 436
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.07 E-value=0.01 Score=53.24 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhc
Q psy14166 112 PVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.++|+||+|+||||+++.|++.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999883
No 437
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.05 E-value=0.015 Score=53.18 Aligned_cols=27 Identities=19% Similarity=0.490 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.++.|+|.||+|+|||+|++.|+....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 357899999999999999999998754
No 438
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.04 E-value=0.014 Score=52.67 Aligned_cols=25 Identities=12% Similarity=0.386 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.++.++|.||+|+|||+|++.++..
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999875
No 439
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.04 E-value=0.013 Score=51.22 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
..|+|+|.+|||||||.++|....
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 468999999999999999998753
No 440
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.02 E-value=0.016 Score=52.95 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
....|+|+|++|||||||++.|+..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999865
No 441
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.99 E-value=0.014 Score=53.35 Aligned_cols=25 Identities=36% Similarity=0.504 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
++-++|+|+||+||||++..|+...
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhcC
Confidence 5789999999999999999999863
No 442
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.99 E-value=0.015 Score=50.88 Aligned_cols=24 Identities=17% Similarity=0.458 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
..|+|+|.+|||||||+++|....
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 579999999999999999999763
No 443
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=94.97 E-value=0.0095 Score=56.95 Aligned_cols=57 Identities=21% Similarity=0.197 Sum_probs=36.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCC--CCCCCcceeecCHHHHH
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKP--GEEDGKEYHFVSHETMT 168 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~--gE~~G~dY~fvs~~~f~ 168 (264)
-.|+|+|++|||||||+|+|...... +...++.|||.... -..+|..+.++|...+.
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a-~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~ 283 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRA-IVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIR 283 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBS-CCSCCTTCCHHHHHHEEEETTEEEEECC-----
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCeeEEEEEEEEEECCEEEEEEECCccc
Confidence 35999999999999999999976321 22344566665422 13467778888766653
No 444
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.96 E-value=0.015 Score=52.92 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+++|+|+||+|+||||++..|+...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999999998764
No 445
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.95 E-value=0.019 Score=49.92 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
-.|+|+|.+|||||||++.|....
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999999764
No 446
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=94.92 E-value=0.013 Score=58.25 Aligned_cols=19 Identities=47% Similarity=0.611 Sum_probs=17.6
Q ss_pred CCCeEEEEcCCCCCHHHHH
Q psy14166 109 LRRPVVLIGPSGVGRSELK 127 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~ 127 (264)
.+.+++|+||||||||||+
T Consensus 43 ~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 43 RGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TTSEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHh
Confidence 5689999999999999996
No 447
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=94.92 E-value=0.016 Score=54.23 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+.+++|+||+|+|||||++.|....
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhh
Confidence 4799999999999999999988654
No 448
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.92 E-value=0.0093 Score=48.24 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|...
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999643
No 449
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=94.90 E-value=0.005 Score=56.83 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+ +++|+||+|+|||||++.|....
T Consensus 60 ~G-~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 60 GG-FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp SS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred CC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 45 99999999999999999886544
No 450
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.89 E-value=0.016 Score=56.85 Aligned_cols=27 Identities=41% Similarity=0.685 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
+..++|+||+|+|||||++.|+...+.
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 479999999999999999999988653
No 451
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.88 E-value=0.015 Score=54.99 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
+..++|.||+|+|||||++.|+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999998875
No 452
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.85 E-value=0.0055 Score=50.00 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=4.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|...
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999865
No 453
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.85 E-value=0.019 Score=47.80 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
+++++|+||.|+||||++-.++..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999998666543
No 454
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.83 E-value=0.016 Score=59.13 Aligned_cols=25 Identities=28% Similarity=0.487 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+++++|+||+|+|||||++.|+..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 4689999999999999999998764
No 455
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=94.82 E-value=0.0022 Score=55.74 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+++|+||+|||||||++.|+...+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcccc
Confidence 3678999999999999999988643
No 456
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.80 E-value=0.017 Score=48.70 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHh
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIA 132 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~ 132 (264)
.+.+|+||+|+|||||+..|.-
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHH
Confidence 6999999999999999998753
No 457
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.77 E-value=0.0062 Score=50.56 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|...
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999854
No 458
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.76 E-value=0.017 Score=52.74 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++.|+|.||+|+|||+|++.|+....
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC
Confidence 36799999999999999999998753
No 459
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.76 E-value=0.017 Score=58.72 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
+++++|+||+|+|||||++.|+..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 689999999999999999998764
No 460
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.72 E-value=0.014 Score=52.10 Aligned_cols=26 Identities=15% Similarity=0.127 Sum_probs=23.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
..++|.||+|+|||+|++.|+...+.
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 68999999999999999999987543
No 461
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.69 E-value=0.019 Score=53.41 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
..|+|+|++|+|||||++.|+...
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 459999999999999999988753
No 462
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.68 E-value=0.022 Score=54.37 Aligned_cols=28 Identities=43% Similarity=0.917 Sum_probs=24.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKF 138 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f 138 (264)
+-|+|+||+|+|||+|++.|+...+..|
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 5799999999999999999999865433
No 463
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.68 E-value=0.02 Score=54.34 Aligned_cols=27 Identities=30% Similarity=0.505 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.++=|+|.||+|+|||.|++.|+....
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 347799999999999999999998743
No 464
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.68 E-value=0.014 Score=53.82 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhc
Q psy14166 112 PVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
-|+|+|++|+|||||++.|...
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4799999999999999998765
No 465
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.67 E-value=0.017 Score=51.37 Aligned_cols=22 Identities=23% Similarity=0.452 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhc
Q psy14166 112 PVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.++|.||+|+||||+++.|+..
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999876
No 466
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.64 E-value=0.018 Score=49.77 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
...++|.||+|+||||++..|+...
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998864
No 467
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.61 E-value=0.021 Score=54.27 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.++-|+|.||||+|||.|++.|+....
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999998743
No 468
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.60 E-value=0.013 Score=51.64 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
...++|.||+|+|||+|++.+....
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998764
No 469
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.56 E-value=0.016 Score=55.13 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+++|+|+||+||||||++..|+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999854
No 470
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.56 E-value=0.018 Score=58.54 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDPD 136 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p~ 136 (264)
.++.|+|+||||+|||||++.|+...+.
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 4578999999999999999999987654
No 471
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.55 E-value=0.021 Score=51.12 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
.+++++|+|++|+||||++..|+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998764
No 472
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.55 E-value=0.021 Score=48.71 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhc
Q psy14166 112 PVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
-|+|+|.+|||||+|+++++..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 5899999999999999999864
No 473
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.54 E-value=0.023 Score=53.66 Aligned_cols=25 Identities=32% Similarity=0.609 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
++.|+|.||+|+|||+|++.|+...
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 4789999999999999999999875
No 474
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.53 E-value=0.025 Score=52.09 Aligned_cols=26 Identities=31% Similarity=0.575 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.+.|+|.||+|+|||+|++.|+....
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhc
Confidence 47899999999999999999998754
No 475
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.52 E-value=0.02 Score=53.04 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
++.++.|+||+|+|||||+..|+..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999998865
No 476
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.52 E-value=0.022 Score=54.11 Aligned_cols=117 Identities=15% Similarity=0.245 Sum_probs=58.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCcceeecCHHHHHHHHH-----cCCcceeeeecCc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLIS-----AGKMIEFGEYKGH 185 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE~~G~dY~fvs~~~f~~~i~-----~~~flE~~~~~g~ 185 (264)
..++|.||+|+|||||++.|+......|.. +...+ .|.+. + ++.+..... .+..+..-+. +.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~-l~a~~--------~~~~~--i-r~~~~~a~~~~~~~~~~iLfIDEI-~~ 117 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVER-ISAVT--------SGVKE--I-REAIERARQNRNAGRRTILFVDEV-HR 117 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEE-EETTT--------CCHHH--H-HHHHHHHHHHHHTTCCEEEEEETT-TC
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEE-EEecc--------CCHHH--H-HHHHHHHHHhhhcCCCcEEEEeCh-hh
Confidence 579999999999999999999876443322 22111 11110 0 111211110 1112211111 11
Q ss_pred eecCCHHHHHHHHHcCCeEEEEcC---HH--HHHHHhcCCCCcEEEEEeCCChHHHHHHHHhh
Q psy14166 186 LYGTSSDSVLELVNSGRVAVLNPA---YQ--SLKVLRSPAFKPLVLFIAPPPFAALKESRITA 243 (264)
Q Consensus 186 ~YGt~~~si~~vl~~Gki~vld~~---~~--~~~~Lr~~~~~p~vIfI~pps~e~l~~~r~~~ 243 (264)
+-....+.+...+++|.+.++-.. +. ....|... ..++.+.+|+.+.+...-...
T Consensus 118 l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR---~~v~~l~~l~~edi~~il~~~ 177 (447)
T 3pvs_A 118 FNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSR---ARVYLLKSLSTEDIEQVLTQA 177 (447)
T ss_dssp C------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTT---EEEEECCCCCHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCc---eeEEeeCCcCHHHHHHHHHHH
Confidence 222233456677888887655332 21 12334332 336668899988887654443
No 477
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.51 E-value=0.022 Score=54.66 Aligned_cols=25 Identities=28% Similarity=0.634 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+.|+|+||+|+|||+|++.|+....
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999998643
No 478
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.48 E-value=0.024 Score=53.99 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.++=|+|.||+|+|||.|++.|+....
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 347899999999999999999998743
No 479
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=94.47 E-value=0.018 Score=52.88 Aligned_cols=55 Identities=22% Similarity=0.284 Sum_probs=36.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhcCCCCccccccccCCCCCCCC--CCC-cceeecCHHHHH
Q psy14166 112 PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGE--EDG-KEYHFVSHETMT 168 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~~p~~f~~~v~~TTR~~r~gE--~~G-~dY~fvs~~~f~ 168 (264)
-|+|+|.+|||||||+++|....|. ....+.||..|..+. .++ ..+.++|-.-+.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~--i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i 217 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPK--IADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 217 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCE--ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCc--cccCCccccCceEEEEEeCCCceEEEecCCCCc
Confidence 4899999999999999999877542 123345777665432 222 456666655554
No 480
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.45 E-value=0.025 Score=49.92 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+.++|.||.|+|||||++.++...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc
Confidence 699999999999999999998764
No 481
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.45 E-value=0.01 Score=49.49 Aligned_cols=21 Identities=29% Similarity=0.646 Sum_probs=18.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHH
Q psy14166 111 RPVVLIGPSGVGRSELKRRLI 131 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~ 131 (264)
-.|+|+|.+|||||||+++|+
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~ 36 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHL 36 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999944
No 482
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.44 E-value=0.022 Score=51.61 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHH
Q psy14166 111 RPVVLIGPSGVGRSELKRRLI 131 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~ 131 (264)
.+.+|+||+|+|||||+..|.
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999863
No 483
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.32 E-value=0.033 Score=47.57 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
+..+++++|..|||||||++.|+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 5578899999999999999999843
No 484
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.31 E-value=0.025 Score=54.47 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
++.+++|+||+|+|||||++.|+...
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998764
No 485
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.29 E-value=0.03 Score=49.09 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
..++|.||+|+|||++++.|+..
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35999999999999999999876
No 486
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.28 E-value=0.031 Score=53.97 Aligned_cols=25 Identities=36% Similarity=0.725 Sum_probs=22.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
+-++|+||+|+|||+|++.|+....
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999998754
No 487
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.24 E-value=0.026 Score=49.79 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
+.++|.||.|+|||+|++.++...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999998763
No 488
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.22 E-value=0.027 Score=53.12 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
.++=|.|.||||+|||.|++.|+....
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 347899999999999999999998754
No 489
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.21 E-value=0.029 Score=52.99 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 110 RRPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 110 ~r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
++-++|.||+|+|||+|++.|+....
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 46899999999999999999998743
No 490
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.17 E-value=0.031 Score=50.09 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALD 134 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~ 134 (264)
..++|.||+|+||||+++.++...
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998753
No 491
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.18 E-value=0.0087 Score=49.21 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
--|+|+|++|||||||+++|...
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 46899999999999999999854
No 492
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.12 E-value=0.03 Score=51.40 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
++++++|.||+|+|||||+..|+..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999888754
No 493
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.11 E-value=0.02 Score=59.27 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=21.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHh
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIA 132 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~ 132 (264)
.+++++|+||+|+|||||++.+..
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 468999999999999999998753
No 494
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.08 E-value=0.029 Score=51.93 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+++|+||+|+|||||++.|...
T Consensus 27 g~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHh
Confidence 39999999999999999998754
No 495
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.06 E-value=0.016 Score=51.62 Aligned_cols=25 Identities=40% Similarity=0.581 Sum_probs=22.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHhcCC
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIALDP 135 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~~~p 135 (264)
..++|.||+|+|||+|++.|+...+
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred ceEEEECCCCccHHHHHHHHHHhCc
Confidence 4699999999999999999998764
No 496
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.04 E-value=0.022 Score=51.17 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHh
Q psy14166 111 RPVVLIGPSGVGRSELKRRLIA 132 (264)
Q Consensus 111 r~ivLiGpsGvGKsTL~~~L~~ 132 (264)
.+.+|+||+|+|||||+..|.-
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHH
Confidence 3999999999999999999874
No 497
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.04 E-value=0.037 Score=46.56 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHh
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIA 132 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~ 132 (264)
++.+++|.|++|+|||+|+..++.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 468999999999999999977653
No 498
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.97 E-value=0.035 Score=48.46 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhc
Q psy14166 112 PVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 112 ~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.++|.||+|+|||++++.|+..
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHH
Confidence 4999999999999999999876
No 499
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.96 E-value=0.029 Score=58.15 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHH
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRL 130 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L 130 (264)
.+++++|+||+|+||||+++.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4689999999999999999988
No 500
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.93 E-value=0.031 Score=53.25 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHhc
Q psy14166 109 LRRPVVLIGPSGVGRSELKRRLIAL 133 (264)
Q Consensus 109 ~~r~ivLiGpsGvGKsTL~~~L~~~ 133 (264)
.+.+|+|+|++||||||++..|+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 3579999999999999999999864
Done!