RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14166
(264 letters)
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 187 bits (476), Expect = 8e-60
Identities = 58/129 (44%), Positives = 87/129 (67%)
Query: 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTS 169
R+ +VLIG SGVGRS +K L++ +P+KF PYTTRP + EEDGKEYHF+S E MT
Sbjct: 19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTR 78
Query: 170 LISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIA 229
ISA + +EFG Y+G+++GT ++V ++ ++A+L+ Q+LK++R+ P ++FIA
Sbjct: 79 NISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIA 138
Query: 230 PPPFAALKE 238
P E
Sbjct: 139 PTDQGTQTE 147
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 184 bits (471), Expect = 3e-59
Identities = 53/130 (40%), Positives = 79/130 (60%)
Query: 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTS 169
R+ +VL+G GVGR +K LI PD+F P+TTRP K EE+GK Y+FVSH+ M
Sbjct: 5 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQ 64
Query: 170 LISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIA 229
IS + +E+G ++ +YGT +++ ++ G +A+L+ Q+LKVLR+ F P V+FIA
Sbjct: 65 DISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIA 124
Query: 230 PPPFAALKES 239
P
Sbjct: 125 APTITPGLNE 134
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 188 bits (479), Expect = 4e-59
Identities = 65/242 (26%), Positives = 107/242 (44%), Gaps = 29/242 (11%)
Query: 6 IPSKALQERK--ILHERSLMENGDTN--SNPSLGPCGPRLDAACIPLVKIADTVYSSPSK 61
S+AL R +LH +++ GD + D IP S +
Sbjct: 18 FLSQALSFRFGDVLH---VIDAGDEEWWQARRVHSDSETDDIGFIP----------SKRR 64
Query: 62 AKSPTGLSCSAAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGV 121
+ + K + + + + +YE V ++ RP++++GP+
Sbjct: 65 VER------REWSRLKAKDWGSSSGSQGREDSVLSYETVTQMEV--HYARPIIILGPT-- 114
Query: 122 GRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVS-HETMTSLISAGKMIEFG 180
+ L++ PDKF P+TTRPK+ E DG++YHFVS E M I A K IE G
Sbjct: 115 -KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAG 173
Query: 181 EYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESR 240
+Y HLYGTS SV E+ G+ +L+ + +++ L++ P+ +FI P + E
Sbjct: 174 QYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEIN 233
Query: 241 IT 242
Sbjct: 234 KR 235
Score = 26.6 bits (59), Expect = 8.8
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 2 RAGIIPSKALQERKILHERSLMENGDTNS 30
G IPSK ER+ + G ++
Sbjct: 55 DIGFIPSKRRVERREWSRLKAKDWGSSSG 83
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 181 bits (461), Expect = 2e-56
Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 8/184 (4%)
Query: 58 SPSKAKSPTGLSCSAAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIG 117
G+ S +K + E + +YE V +L RPV+++G
Sbjct: 52 LGDNEDEQIGIVPSKRRWERK--MRARDRSVKSEENVLSYEAVQRLSI--NYTRPVIILG 107
Query: 118 PSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSH-ETMTSLISAGKM 176
P + + LI+ PDKF P+TTRPK+ E DG++YHFVS E M I
Sbjct: 108 P---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLF 164
Query: 177 IEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAAL 236
IE G+Y +LYGTS SV E+ G+ +L+ + ++K L+ P+ +FI P ++
Sbjct: 165 IEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSV 224
Query: 237 KESR 240
E
Sbjct: 225 MEMN 228
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 167 bits (422), Expect = 2e-47
Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Query: 63 KSPTGLSCSAAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVG 122
S + + K + + + + +YE V ++ RP++++GP
Sbjct: 486 PSKRRVERREWSRLKAKDWGSSSGSQGREDSVLSYETVTQMEVHY--ARPIIILGP---T 540
Query: 123 RSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVS-HETMTSLISAGKMIEFGE 181
+ L++ PDKF P+TTRPK+ E DG++YHFVS E M I A K IE G+
Sbjct: 541 KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQ 600
Query: 182 YKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESR 240
Y HLYGTS SV E+ G+ +L+ + +++ L++ P+ +FI P + E
Sbjct: 601 YNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEIN 659
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus
musculus} SCOP: c.37.1.1
Length = 198
Score = 123 bits (311), Expect = 5e-35
Identities = 53/132 (40%), Positives = 77/132 (58%), Gaps = 1/132 (0%)
Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
RPVVL GPSG G+S L ++L F +TTR +PGEEDGK+Y+FV+ E M
Sbjct: 5 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRD 64
Query: 171 ISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAP 230
I+AG IE E+ G+LYGTS ++V + R+ VL+ Q ++ ++ P+ +F+ P
Sbjct: 65 IAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQP 124
Query: 231 PPFAALKESRIT 242
P L E R+
Sbjct: 125 PSLDVL-EQRLR 135
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 122 bits (308), Expect = 1e-34
Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 2/133 (1%)
Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
RP+V+ GPSG G+S L ++L A PD F TTR + GE +GK+Y+FVS + S+
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 61
Query: 171 ISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQ-SLKVLRSPAFKPLVLFIA 229
I + IE+ ++ G+ YG++ SV ++ SG+ +L+ Q V P LFIA
Sbjct: 62 IKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIA 121
Query: 230 PPPFAALKESRIT 242
PP L + R+
Sbjct: 122 PPSVEDL-KKRLE 133
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 116 bits (293), Expect = 4e-32
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 2/138 (1%)
Query: 106 METLR-RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSH 164
M+ + +VL GPSGVG+ +++R+ + TTR + GE DG +Y F +
Sbjct: 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTR 60
Query: 165 ETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPL 224
+ +LI + IE+ EY G+ YGT V + ++ G L + K +R L
Sbjct: 61 DAFEALIKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDAL 120
Query: 225 VLFIAPPPFAALKESRIT 242
+F+APP L R+
Sbjct: 121 FIFLAPPSLEHL-RERLV 137
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 114 bits (289), Expect = 1e-31
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
P+V+ GPSGVG+ L +++++ P +F TTR K+ E +G +Y+FV +
Sbjct: 13 PPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERK 72
Query: 171 ISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQ-SLKVLRSPAF-KPLVLFI 228
+ G+ +EF +Y + YGT V G++ + ++ S + +F+
Sbjct: 73 LKEGQFLEFDKYANNFYGTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFV 132
Query: 229 APPPFAALKE 238
PP L
Sbjct: 133 KPPSIDILLG 142
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 114 bits (287), Expect = 3e-31
Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 4/140 (2%)
Query: 103 LYPMETLRR--PVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYH 160
L P ++ P+V+ GPSGVG+ L ++L+ P+ F TTR K+ E++G +Y+
Sbjct: 14 LVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYY 73
Query: 161 FVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQ-SLKVLRSP 219
F+ + +E+ Y + YGT + ++ + ++ +S
Sbjct: 74 FIDKTIFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKST 133
Query: 220 AF-KPLVLFIAPPPFAALKE 238
L +FI PP L
Sbjct: 134 HIKNALYIFIKPPSTDVLLS 153
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 113 bits (286), Expect = 4e-31
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
+VL GPSGVG+ ++ + F TTR + GE+DG +Y+F S E
Sbjct: 9 LLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQA 68
Query: 171 ISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAP 230
I GKM+E+ EY G+ YGT + V E + +G L Q +R + + +F+ P
Sbjct: 69 IKDGKMLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTP 128
Query: 231 PPFAALKESRIT 242
P + L ++RI
Sbjct: 129 PDLSEL-KNRII 139
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 105 bits (265), Expect = 4e-28
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 4/134 (2%)
Query: 111 RPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSL 170
R VVL GPS VG+S + R L P+ V+ TTR +PGE DG +YHF+ L
Sbjct: 21 RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVS-ATTRAPRPGEVDGVDYHFIDPTRFQQL 79
Query: 171 ISAGKMIEFGEYKG--HLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFI 228
I G+++E+ E G H GT + V +G ++ + ++ + + +F+
Sbjct: 80 IDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFL 139
Query: 229 APPPFAALKESRIT 242
APP + L ++R+
Sbjct: 140 APPSWQDL-QARLI 152
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 103 bits (260), Expect = 4e-27
Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 8/134 (5%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLIS 172
+VL PSG G++ + +L+ + + TTR + GE++GK+Y+FV E L S
Sbjct: 30 LVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89
Query: 173 AGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVL----NPAYQSLKVLRSPAFKPLVLFI 228
G++IE E G+ YG ++ + V+ G +L A++ ++++R +FI
Sbjct: 90 NGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVS---IFI 146
Query: 229 APPPFAALKESRIT 242
PP L+ R+
Sbjct: 147 MPPSMEELRR-RLC 159
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 101 bits (255), Expect = 1e-26
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 2/130 (1%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLIS 172
++ PSG G++ L R L+ + ++ +TTRPK+PG+++G +Y F+ +++
Sbjct: 10 FIISAPSGAGKTSLVRALVKALAEIKISIS-HTTRPKRPGDQEGVDYFFIDETRFQAMVK 68
Query: 173 AGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPP 232
G +E YGT D VL + +GR +L +Q + +R L +FI PP
Sbjct: 69 EGAFLEHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPS 128
Query: 233 FAALKESRIT 242
AL+E R+
Sbjct: 129 IEALRE-RLI 137
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 101 bits (254), Expect = 3e-26
Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 2/131 (1%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVT-PYTTRPKKPGEEDGKEYHFVSHETMTSLI 171
++ PSG G+S L + L+ P TQV+ +TTR +PGE G+ Y FV+H+ +I
Sbjct: 19 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMI 78
Query: 172 SAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPP 231
S +E E G+ YGTS +++ +++ +G L+ +Q + +R +FI PP
Sbjct: 79 SRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPP 138
Query: 232 PFAALKESRIT 242
L R+
Sbjct: 139 SKIELDR-RLR 148
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 97.2 bits (241), Expect = 8e-24
Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 15/143 (10%)
Query: 104 YPMETLRRPVVLIGPSGVGR---SELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYH 160
Y + RPVVL+GPS G +++ L +F TR
Sbjct: 136 YDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIS-ITRVTADIS------- 187
Query: 161 FVSHETMTSLISAGKMIEFGEYKGHL--YGTSSDSVLELVNSGRVAVLN-PAYQSLKVLR 217
++ ++ + S +IE + L + + + EL + ++ VL+ L
Sbjct: 188 -LAKRSVLNNPSKHAIIERSNTRSSLAEVQSEIERIFELARTLQLVVLDADTINHPAQLS 246
Query: 218 SPAFKPLVLFIAPPPFAALKESR 240
+ P+V+++ L+
Sbjct: 247 KTSLAPIVVYVKISSPKVLQRLI 269
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 83.3 bits (205), Expect = 2e-18
Identities = 32/235 (13%), Positives = 70/235 (29%), Gaps = 46/235 (19%)
Query: 16 ILHERSLMENGDTNSNPS--LGPCGPRLDAACIP---LVKIADTVYSSPSKAKSPTGLSC 70
+ + NG S + +G ++ IP + +V + K
Sbjct: 130 VFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPKTAGGDRADF 189
Query: 71 S-----AAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSE 125
+ K + + + P YE V RPV + GP
Sbjct: 190 WRFRGLRSSKRNLRKSREDLSAQPVQTKFPAYERVVLREA--GFLRPVTIFGP---IADV 244
Query: 126 LKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGH 185
+ +L +PD + I+ + + G +
Sbjct: 245 AREKLAREEPDIYQ-------------------------------IAKSEPRDAGTDQRS 273
Query: 186 LYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESR 240
++ ++++ + A+L+ ++ L + P+V+F+ P +K R
Sbjct: 274 SGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMR 328
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 82.3 bits (202), Expect = 5e-18
Identities = 33/240 (13%), Positives = 68/240 (28%), Gaps = 68/240 (28%)
Query: 1 MRAGIIPSKALQERKILHERSLMENGDTNSNPSLGPCGPRLDAACIPLVKIADTVYSSPS 60
+ GIIP+K E+ + +L + + G R
Sbjct: 149 VERGIIPNKNRAEQLASVQYTLPKTAGGDRADFWRFRGLRS------------------- 189
Query: 61 KAKSPTGLSCSAAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSG 120
K + + + P YE V RPV + GP
Sbjct: 190 -------------SKRNLRKSREDLSAQPVQTKFPAYERVVLREA--GFLRPVTIFGPI- 233
Query: 121 VGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFG 180
+ +L +PD + I+ + + G
Sbjct: 234 --ADVAREKLAREEPDIYQ-------------------------------IAKSEPRDAG 260
Query: 181 EYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESR 240
+ ++ ++++ + A+L+ ++ L + P+V+F+ P +K R
Sbjct: 261 TDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMR 320
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 77.9 bits (191), Expect = 6e-17
Identities = 37/246 (15%), Positives = 70/246 (28%), Gaps = 77/246 (31%)
Query: 2 RAGIIPSKALQERKILHERSLMENGDTNSNPSLGPCGPRLDAACIPLVKIADTVYSSPSK 61
GIIP+++ E+ E + G
Sbjct: 62 ERGIIPNQSRAEQLASLEAAQRAVGVGPG------------------------------- 90
Query: 62 AKSPTGLSCSAAVKTKKIIYDLAETDDFDREEIPTYEEVAKLYPME-------TLRRPVV 114
S + + + + + +T RE++ + P E + +RPVV
Sbjct: 91 -SSAGSNARAEFWRLRGLRRGAKKTTQRSREDLSALTRQGRYPPYERVVLREASFKRPVV 149
Query: 115 LIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAG 174
++GP ++L A PD+F +
Sbjct: 150 ILGPV---ADIAMQKLTAEMPDQFEIAETVSRTD-------------------------- 180
Query: 175 KMIEFGEYKGHLYGTSSDSVLELVNSGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPPPFA 234
D+V + + A+L+ +++ L + P+V+F P
Sbjct: 181 ---------SPSKIIKLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRP 231
Query: 235 ALKESR 240
ALK R
Sbjct: 232 ALKALR 237
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.006
Identities = 50/246 (20%), Positives = 78/246 (31%), Gaps = 78/246 (31%)
Query: 30 SNPSLGPCGPRLDAACI--PLVKIADTV-YS--------SPSKAKSPT-GLS-CSAAVKT 76
NPS P L + I PL+ + Y +P + +S G + S + T
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 77 KKIIYDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPD 136
I AETD ++ ++ + + L IG R
Sbjct: 280 AVAI---AETDSWE-----SFFVSVRKA-ITVL----FFIG----VRC------------ 310
Query: 137 KFTQVTPYTTRPKKPGE-EDGKEYHFVSHETMTSLIS-AG-------KMIEFGEYKGHLY 187
+ P T+ P P ED E + + ++S + + + HL
Sbjct: 311 --YEAYPNTSLP--PSILEDSLE---NNEGVPSPMLSISNLTQEQVQDYVN--KTNSHLP 361
Query: 188 GTSSDSVLELVNSGRVAVL--NPAYQSLKVLRSPAFKPLVLFIAPPPFAALKESRITAFA 245
+ LVN + V+ P QSL L K P L +SRI
Sbjct: 362 AGKQVEI-SLVNGAKNLVVSGPP--QSLYGLNLTLRK-----AKAPS--GLDQSRI---- 407
Query: 246 RSPFDQ 251
PF +
Sbjct: 408 --PFSE 411
Score = 28.1 bits (62), Expect = 3.4
Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 21/96 (21%)
Query: 151 PGEEDGKEYHFVSHETMTSLISAGKMIEFG-----EYKGHLYGTSSDSVLELVN------ 199
P +E G+ S+ M + I+ G++ +Y G + ++E+VN
Sbjct: 1798 PRDELGR-----SNYGMIA-INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQ 1851
Query: 200 ----SGRVAVLNPAYQSLKVLRSPAFKPLVLFIAPP 231
+G + L+ L ++ + L +
Sbjct: 1852 QYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLS 1887
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 34.1 bits (78), Expect = 0.056
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 94 IPTYEEVAKLYPMETL---RRPVVLIGPSGVGRSE-LKRRLIALDPDKFTQVT--PYTT 146
IPT + + + RP++L GP G G++ L L A + + TT
Sbjct: 1285 IPTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT 1343
Score = 29.5 bits (66), Expect = 1.3
Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 103 LYPMETLRRPVVLIGPSGVGRSELKRRLI-ALDPDKFTQVTPYTTRPK 149
L+ + + V+++GPSG G++ + A++ + + PK
Sbjct: 899 LHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPK 946
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 32.5 bits (74), Expect = 0.16
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 94 IPTYEEVAKLYPMETL---RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVT----PYTT 146
IPT + + L +R ++L GP G G++ + + + + V TT
Sbjct: 1248 IPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALR-NSSLYDVVGINFSKDTT 1306
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 31.2 bits (71), Expect = 0.23
Identities = 6/34 (17%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTT 146
++++G +G G++ L ++L+ K + + +
Sbjct: 5 LMIVGNTGSGKTTLLQQLMK---TKKSDLGMQSA 35
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.43
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
Query: 211 QSLKVLRSPAFKPLVLFIAP--PPFAALKES 239
Q+LK L++ + K L+ A P A+K +
Sbjct: 20 QALKKLQA-SLK---LY-ADDSAPALAIKAT 45
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 30.3 bits (68), Expect = 0.43
Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 6/88 (6%)
Query: 56 YSSPSKAKSPTGLSCSAAVKTKKIIYDLAETDDFDREEIPT-YEEVAKLYP-----METL 109
PSK K L + + + L +F + E+ Y P ET
Sbjct: 15 QRRPSKDKIEDELEMTMVCHRPEGLEQLEAQTNFTKRELQVLYRGFKNECPSGVVNEETF 74
Query: 110 RRPVVLIGPSGVGRSELKRRLIALDPDK 137
++ P G + A D +
Sbjct: 75 KQIYAQFFPHGDASTYAHYLFNAFDTTQ 102
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.67
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 10/46 (21%)
Query: 90 DREEIPTYEEVAKLYPMETLR------RP---VVLIGPSGVGRSEL 126
D + Y V++L P LR RP V++ G G G++ +
Sbjct: 122 DNQVFAKYN-VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Score = 28.3 bits (62), Expect = 3.1
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
Query: 122 GRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEF 179
L R ++ D + + + P D Y + H + ++ +M F
Sbjct: 441 NEYALHRSIV----DHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-LKNIEHPERMTLF 493
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 29.8 bits (67), Expect = 0.92
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 98 EEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGK 157
E + L ++ VV+ G VG+S L + L P+ + P+TTR G+ +
Sbjct: 155 EVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASY--PFTTRGINVGQFEDG 212
Query: 158 EYHFV 162
+ +
Sbjct: 213 YFRYQ 217
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 29.5 bits (67), Expect = 0.93
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 24/73 (32%)
Query: 86 TDDFDREEIPTYEEVAKLYP----------------METLR-----RPVVLIGPSGVGRS 124
D + EE E +Y ++ L +L GPSGVG+S
Sbjct: 120 IDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEGFICILAGPSGVGKS 179
Query: 125 ELKRRLIALDPDK 137
+ L L ++
Sbjct: 180 SI---LSRLTGEE 189
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 29.1 bits (66), Expect = 0.96
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 106 METLRRPVVLIGPSGVGRSELKRRL 130
M+ + LIG G G++ + +L
Sbjct: 1 MKKNLTNIYLIGLMGAGKTSVGSQL 25
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 29.1 bits (66), Expect = 1.1
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTT 146
V+L+G SGVG++ L R F T +T
Sbjct: 13 VMLVGDSGVGKTCLLVRFKD---GAFLAGTFIST 43
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent
proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A*
1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E*
1ht1_E* 1ht2_E*
Length = 444
Score = 29.6 bits (67), Expect = 1.1
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 13/48 (27%)
Query: 107 ETLRRPVV-----LIGPSGVGRSELKRRL--IALDP------DKFTQV 141
E LR V +IGP+GVG++E+ RRL +A P KFT+V
Sbjct: 42 EPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEV 89
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 29.2 bits (65), Expect = 1.1
Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 8/94 (8%)
Query: 57 SSPSKAKSPTGLSCSAAVKTKKIIYDLAETDDFDREEIPT-YEEVAKLYP-----METLR 110
+ S + L S + + L F ++E+ + Y P +T +
Sbjct: 56 APQGSDSSDSELELSTVRHQPEGLDQLQAQTKFTKKELQSLYRGFKNECPTGLVDEDTFK 115
Query: 111 RPVVLIGPSGVGRSELKRRLI-ALDPDKFTQVTP 143
P G + L A D D +
Sbjct: 116 LIYSQFFPQG-DATTYAHFLFNAFDADGNGAIHF 148
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 29.0 bits (64), Expect = 1.3
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 8/69 (11%)
Query: 113 VVLIGPSGVGRS----ELKRRL----IALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSH 164
++L G S G+S L+ L +A D + P + + G E +
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIG 65
Query: 165 ETMTSLISA 173
+L A
Sbjct: 66 PEFRALEGA 74
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 29.0 bits (66), Expect = 1.3
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 23/71 (32%)
Query: 86 TDDFDREEIPTYEEVAKLYP---------------METLR-----RPVVLIGPSGVGRSE 125
D +D +++ E+ ++Y +E L+ + + G SGVG+S
Sbjct: 125 MDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSS 184
Query: 126 LKRRLIALDPD 136
L L A++P
Sbjct: 185 L---LNAINPG 192
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 28.8 bits (65), Expect = 1.5
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTT 146
VVLIG GVG+S L + +
Sbjct: 40 VVLIGEQGVGKSTLANIFAG---VHDSMDSDCEV 70
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 28.4 bits (64), Expect = 1.7
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYT 145
V ++G + VG+S L KF + T
Sbjct: 23 VAVVGEATVGKSALISMF-TSKGSKFLKDYAMT 54
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 27.9 bits (63), Expect = 2.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 109 LRRPVVLIGPSGVGRSELKRRL 130
+ VL+G G G+S + RRL
Sbjct: 1 MAPKAVLVGLPGSGKSTIGRRL 22
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 27.9 bits (63), Expect = 2.2
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYT 145
++IG +G G+S L + I KF + +T
Sbjct: 13 FLVIGNAGTGKSCLLHQFIE---KKFKDDSNHT 42
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 27.9 bits (63), Expect = 2.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 110 RRPVVLIGPSGVGRSELKRRL 130
+R + L+GP G G+S + R+L
Sbjct: 4 KRNIFLVGPMGAGKSTIGRQL 24
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 28.3 bits (64), Expect = 2.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 113 VVLIGPSGVGRSELKR 128
VV+IGPSG G+S R
Sbjct: 53 VVVIGPSGSGKSTFLR 68
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 28.4 bits (63), Expect = 2.6
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYT 145
V LIG G++ L ++LI + F T
Sbjct: 44 VHLIGDGMAGKTSLLKQLIG---ETFDPKESQT 73
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 28.0 bits (63), Expect = 2.7
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYT 145
++IG +G G+S L + I +KF Q + +T
Sbjct: 28 FLVIGSAGTGKSCLLHQFIE---NKFKQDSNHT 57
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 28.1 bits (63), Expect = 2.7
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYT 145
+VLIG SGVG+S L R ++F + T
Sbjct: 16 IVLIGDSGVGKSNLLSRFTK---NEFNMDSKST 45
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 27.6 bits (62), Expect = 3.0
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYT 145
VVLIG SGVG+S L R ++F + T
Sbjct: 8 VVLIGDSGVGKSNLLSRFTR---NEFNLESKST 37
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 27.5 bits (62), Expect = 3.0
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYT 145
++IG GVG+S L + KF P+T
Sbjct: 18 YIIIGDMGVGKSCLLHQFTE---KKFMADCPHT 47
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 27.9 bits (62), Expect = 3.0
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTT 146
VL+G S VG+S + RL D F + T T
Sbjct: 10 TVLLGESSVGKSSIVLRLTK---DTFHENTNTTI 40
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 28.0 bits (63), Expect = 3.7
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 21/62 (33%)
Query: 86 TDDFDREEIPTYEEVAKLYP----------------METLR-----RPVVLIGPSGVGRS 124
D D E + E +Y ++ L R + G SGVG+S
Sbjct: 170 IDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKS 229
Query: 125 EL 126
L
Sbjct: 230 SL 231
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 27.6 bits (62), Expect = 3.7
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYT 145
VVLIG SGVG+S L R ++F + T
Sbjct: 32 VVLIGDSGVGKSNLLSRFTR---NEFNLESKST 61
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia chrysanthemi}
SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 27.2 bits (61), Expect = 4.0
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 109 LRRPVVLIGPSGVGRSELKRRL 130
+ P+ ++G G G + + R L
Sbjct: 1 MTEPIFMVGARGCGMTTVGREL 22
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative; HET: NAD; 2.50A
{Legionella pneumophila subsp}
Length = 480
Score = 27.7 bits (61), Expect = 4.0
Identities = 6/40 (15%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 106 METLRRPVVLIGPSGVGRSELK--RRLIALDPDKFTQVTP 143
+ V++G VG++ + + P + T +
Sbjct: 9 KILFKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAA 48
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Length = 181
Score = 27.3 bits (60), Expect = 4.3
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 106 METLRRPVVLIGPSGVGRSELKRRLIA 132
+ + V++ G + +G+SEL LI
Sbjct: 12 LVIDKMGVLITGEANIGKSELSLALID 38
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 27.2 bits (61), Expect = 4.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 113 VVLIGPSGVGRSELKRR 129
+++IG SGVG+S L R
Sbjct: 18 ILIIGESGVGKSSLLLR 34
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A
{Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Length = 176
Score = 27.2 bits (61), Expect = 4.5
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 7/47 (14%)
Query: 96 TYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVT 142
T EVA ++PVVL+G +LD
Sbjct: 120 TAAEVALAL---KAKKPVVLLGTQPEAEKFFT----SLDAGLVHVAA 159
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 27.2 bits (61), Expect = 4.9
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYT 145
+VLIG +GVG++ L RR F T
Sbjct: 29 IVLIGNAGVGKTCLVRRFTQ---GLFPPGQGAT 58
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 27.2 bits (61), Expect = 5.0
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYT 145
++IG +GVG+S L + +F V T
Sbjct: 24 YIIIGDTGVGKSCLLLQFTD---KRFQPVHDLT 53
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 26.8 bits (60), Expect = 5.3
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYT 145
VVLIG SGVG++ L R ++F+ + T
Sbjct: 28 VVLIGESGVGKTNLLSRFTR---NEFSHDSRTT 57
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 26.8 bits (60), Expect = 5.3
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYT 145
+VL+G + VG++ + +R F++ T
Sbjct: 32 LVLVGDASVGKTCVVQRFKT---GAFSERQGST 61
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 26.7 bits (60), Expect = 5.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 113 VVLIGPSGVGRSELKRRLI 131
V+L+G SGVG+S L
Sbjct: 5 VMLVGESGVGKSTLAGTFG 23
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 27.1 bits (61), Expect = 5.5
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 113 VVLIGPSGVGRSELKR 128
+ +IG SG G+S R
Sbjct: 35 ISIIGSSGSGKSTFLR 50
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 27.3 bits (60), Expect = 5.6
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKF---TQVTPYTTRPKK-PGEEDGKEYHFV 162
+VL+G +G G+S + L F T T + +K E V
Sbjct: 32 IVLVGKTGAGKSATGNSI--LGRKVFHSGTAAKSITKKCEKRSSSWKETELVVV 83
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 27.3 bits (61), Expect = 5.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDK 137
V+++GP+G G++ L R + L P
Sbjct: 33 VIILGPNGSGKTTLLRAISGLLPYS 57
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 27.2 bits (61), Expect = 5.9
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 107 ETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQVT 142
E + +++IGP+GVG++E+ RRL L F +V
Sbjct: 47 EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase,
quinoxaline, alternative splicing, ATP-binding,
chromosomal rearrangement; HET: IHX; 1.40A {Homo
sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A*
2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A*
2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A*
3ctj_A* ...
Length = 298
Score = 27.2 bits (61), Expect = 6.1
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 61 KAKSPTGLSCSAAVKTKKIIYDLAETDDFDRE 92
G AVK+ I D+ E F E
Sbjct: 45 TLLDNDGKKIHCAVKSLNRITDIGEVSQFLTE 76
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 26.8 bits (60), Expect = 6.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 113 VVLIGPSGVGRSELKRRLI 131
V+L+G SGVG+S L
Sbjct: 26 VMLVGESGVGKSTLAGTFG 44
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 26.8 bits (59), Expect = 6.2
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKF 138
+ + GP GVG++ L P F
Sbjct: 8 IWINGPFGVGKTHTAHTLHERLPGSF 33
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 27.1 bits (60), Expect = 6.3
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 91 REEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRS 124
+E++ + K M ++ V+++G GVG+S
Sbjct: 19 QEKLIEFFGKLKQKDMNSMT--VLVLGKGGVGKS 50
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 26.9 bits (60), Expect = 6.3
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYT 145
+VL G + VG+S RL ++F + T
Sbjct: 31 IVLAGDAAVGKSSFLMRLCK---NEFRENISAT 60
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 26.8 bits (59), Expect = 6.3
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 91 REEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRS 124
+ ++ K + +L ++++G GVG+S
Sbjct: 22 QTKLLELLGNLKQEDVNSLT--ILVMGKGGVGKS 53
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 27.1 bits (61), Expect = 6.4
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 114 VLIGPSGVGRSELKRRLIALDPD 136
V G SGVG+S L L A+ P+
Sbjct: 177 VFAGQSGVGKSSL---LNAISPE 196
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 27.1 bits (61), Expect = 6.5
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 113 VVLIGPSGVGRSELKRRLIA 132
VV +GPSG G+S L R+IA
Sbjct: 32 VVFVGPSGCGKSTL-LRMIA 50
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 27.0 bits (59), Expect = 6.5
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 89 FDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLI 131
FDRE+ E+ KL +++G G+S + + I
Sbjct: 16 FDREK-----EIEKL--KGLRAPITLVLGLRRTGKSSIIKIGI 51
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 26.7 bits (60), Expect = 6.6
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 113 VVLIGPSGVGRSELKRRLI 131
VVL+G GVG++ L
Sbjct: 7 VVLLGDPGVGKTSLASLFA 25
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 26.4 bits (59), Expect = 7.0
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYT 145
+++IG S VG++ L R A +F T T
Sbjct: 23 IIVIGDSNVGKTCLTYRFCA---GRFPDRTEAT 52
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal
transduction, GRB2, SHC, ATP-binding, glycoprotein,
membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Length = 373
Score = 27.0 bits (60), Expect = 7.2
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 61 KAKSPTGLSCSAAVKTKKIIYDLAETDDFDRE 92
G AVK+ I D+ E F E
Sbjct: 109 TLLDNDGKKIHCAVKSLNRITDIGEVSQFLTE 140
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 26.3 bits (59), Expect = 7.4
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQ 140
V+L+G GVG+S L R + +KF
Sbjct: 10 VILLGDGGVGKSSLMNRYVT---NKFDT 34
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 26.5 bits (59), Expect = 7.4
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQVTPYT 145
++LIG SGVG+S L R D +T T
Sbjct: 11 LLLIGNSGVGKSCLLLRFSD---DTYTNDYIST 40
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 26.5 bits (59), Expect = 7.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 113 VVLIGPSGVGRSELKRRLI 131
VVLIG GVG+S L
Sbjct: 9 VVLIGEQGVGKSTLANIFA 27
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 26.4 bits (59), Expect = 8.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 113 VVLIGPSGVGRSELKRR 129
+++IG SGVG+S L R
Sbjct: 12 LLIIGDSGVGKSSLLLR 28
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 27.0 bits (59), Expect = 8.1
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
Query: 110 RRPVVLIGPSGVGRSELKRRLIALDPDKFTQVTPYTTRPKKPGEEDGKEYHFVSHETMTS 169
R V+L+G G G+S + L + +K+ + P D + +++ +
Sbjct: 24 RVCVILVGSPGSGKSTIAEELCQIINEKYHT--FLSEHPNVIEVNDRLKPMVNLVDSLKT 81
Query: 170 LISAGKMIEFGEYKGHLYGTSSDSVLELVNSGRVA 204
L K+ E E +G D + V +
Sbjct: 82 L-QPNKVAEMIENQGLFKDHVEDVNFQPVKYSALT 115
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 26.5 bits (59), Expect = 8.2
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQ 140
V+++G SGVG++ L + + KF+
Sbjct: 11 VIILGDSGVGKTSLMNQYVN---KKFSN 35
>2q07_A Uncharacterized protein AF0587; monomer, structural genomics,
PSI-2, protein structure initiative; 2.04A
{Archaeoglobus fulgidus dsm 4304} SCOP: b.122.1.1
c.18.1.4 d.17.6.5
Length = 306
Score = 26.7 bits (58), Expect = 8.4
Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 1/130 (0%)
Query: 81 YDLAETDDFDREEIPTYEEVAKLYPMETLRRPVVLIGPSGVGRSELKRRLIALDPDKFTQ 140
YD T + EE+ K + + R VV G R ++R ++ +
Sbjct: 84 YDTPVTGHWSEEEVSFVAGWLKRFIEKGGFRKVVAHVTGGY-RKVVERVEDEVEAEVVYT 142
Query: 141 VTPYTTRPKKPGEEDGKEYHFVSHETMTSLISAGKMIEFGEYKGHLYGTSSDSVLELVNS 200
+ + + ++ +FG + L
Sbjct: 143 AEKDVLSDESIERLKQEIESKGKVDLYRRILEHMLSYQFGITWSGKVAGRYPELELLEGK 202
Query: 201 GRVAVLNPAY 210
R+A ++ Y
Sbjct: 203 KRLARVDRIY 212
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 26.3 bits (59), Expect = 8.5
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 113 VVLIGPSGVGRSELKRR 129
+V++G VG+S + +R
Sbjct: 8 MVVVGNGAVGKSSMIQR 24
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 26.4 bits (59), Expect = 8.6
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 113 VVLIGPSGVGRSELKRR 129
+V++G G++ L
Sbjct: 9 IVVLGDGASGKTSLTTC 25
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 26.8 bits (60), Expect = 8.7
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 113 VVLIGPSGVGRSELKRRLIA 132
V L+GPSG G++ ++A
Sbjct: 32 VALLGPSGCGKTTT-LLMLA 50
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 26.4 bits (59), Expect = 9.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 113 VVLIGPSGVGRSELKRR 129
++LIG SGVG++ + R
Sbjct: 11 LLLIGDSGVGKTCVLFR 27
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 26.3 bits (58), Expect = 9.2
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 113 VVLIGPSGVGRSELKRR 129
+VL+G + VG+S + R
Sbjct: 6 LVLLGEAAVGKSSIVLR 22
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 26.0 bits (58), Expect = 9.4
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Query: 113 VVLIGPSGVGRSELKRRLIALDPDKFTQ 140
V+++G SGVG++ L R + DK++Q
Sbjct: 11 VIILGDSGVGKTSLMHRYVN---DKYSQ 35
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate
metabolism, magnesium, metal-binding, multifunctional
enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A
1kkm_A*
Length = 205
Score = 26.1 bits (57), Expect = 9.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 113 VVLIGPSGVGRSELKRRLIA 132
V++ G SGVG+SE L+
Sbjct: 37 VLITGDSGVGKSETALELVQ 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.392
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,088,319
Number of extensions: 242619
Number of successful extensions: 829
Number of sequences better than 10.0: 1
Number of HSP's gapped: 790
Number of HSP's successfully gapped: 130
Length of query: 264
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 172
Effective length of database: 4,133,061
Effective search space: 710886492
Effective search space used: 710886492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.4 bits)