BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14167
         (341 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4A01|A Chain A, Crystal Structure Of The H-Translocating Pyrophosphatase
 pdb|4A01|B Chain B, Crystal Structure Of The H-Translocating Pyrophosphatase
          Length = 766

 Score = 27.7 bits (60), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 10/81 (12%)

Query: 6   VEPIF---WVVDSVLISIGPFLTVLVIFISGFTVFIAYWILFPFYRRQSEWLAYTLAVIG 62
           +EP      V+ +VL++IG  +   V   + FT+F      F   +    W  +    +G
Sbjct: 357 IEPALKKQLVISTVLMTIGVAVVSFVALPTSFTIF-----NFGVQKDVKSWQLFLCVAVG 411

Query: 63  NW--ILINFVFNYYMGFSTSP 81
            W  ++I FV  YY   + SP
Sbjct: 412 LWAGLIIGFVTEYYTSNAYSP 432


>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
           Beta-Galactosidase
 pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
           Reesei With Galactose
 pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
           Reesei With Iptg
 pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
           Reesei With Petg
          Length = 1003

 Score = 27.7 bits (60), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 292 LGLYGGRTIWRHILLPSTHKPLDNGVTW 319
           +GL+GGR   R I+L     PL N VTW
Sbjct: 3   IGLHGGRP--RDIILDDAKGPLQNIVTW 28


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.331    0.144    0.501 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,988,921
Number of Sequences: 62578
Number of extensions: 364749
Number of successful extensions: 693
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 693
Number of HSP's gapped (non-prelim): 4
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.6 bits)