Query psy14167
Match_columns 341
No_of_seqs 190 out of 1729
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 21:09:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14167.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14167hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1313|consensus 100.0 6.9E-52 1.5E-56 362.1 13.0 292 3-325 14-306 (309)
2 KOG1314|consensus 100.0 2.1E-48 4.5E-53 350.4 15.9 231 47-324 39-278 (414)
3 KOG1315|consensus 100.0 2.4E-48 5.1E-53 355.5 15.2 214 53-324 43-281 (307)
4 KOG1311|consensus 100.0 4E-43 8.7E-48 327.8 20.2 195 79-325 79-294 (299)
5 PF01529 zf-DHHC: DHHC palmito 100.0 5.1E-38 1.1E-42 271.0 12.2 149 71-262 2-173 (174)
6 COG5273 Uncharacterized protei 100.0 1.7E-36 3.7E-41 281.4 17.6 214 60-325 60-304 (309)
7 KOG1312|consensus 100.0 4.1E-31 8.9E-36 232.8 15.7 101 56-156 98-210 (341)
8 KOG0509|consensus 100.0 5.4E-29 1.2E-33 241.3 12.3 88 71-158 383-484 (600)
9 KOG1314|consensus 92.9 1.9 4.1E-05 40.6 11.7 75 73-158 70-158 (414)
10 COG5273 Uncharacterized protei 92.0 1.6 3.5E-05 41.0 10.4 52 104-155 105-167 (309)
11 PF13240 zinc_ribbon_2: zinc-r 89.8 0.19 4.1E-06 27.9 1.2 21 96-116 1-21 (23)
12 KOG1311|consensus 88.3 2.7 5.8E-05 39.2 8.5 41 108-148 113-164 (299)
13 PF01529 zf-DHHC: DHHC palmito 86.0 5.5 0.00012 33.6 8.6 35 104-138 44-78 (174)
14 PF13248 zf-ribbon_3: zinc-rib 84.6 0.57 1.2E-05 26.8 1.2 23 94-116 2-24 (26)
15 PRK04136 rpl40e 50S ribosomal 83.4 0.67 1.5E-05 30.5 1.3 24 93-116 13-36 (48)
16 PTZ00303 phosphatidylinositol 75.6 2.1 4.7E-05 44.3 2.7 28 94-121 460-499 (1374)
17 PF06906 DUF1272: Protein of u 72.9 1.8 3.8E-05 29.6 0.9 36 96-134 7-50 (57)
18 PF10571 UPF0547: Uncharacteri 72.2 2.3 5.1E-05 24.3 1.2 22 95-116 1-22 (26)
19 PF12773 DZR: Double zinc ribb 68.8 5.4 0.00012 26.3 2.6 36 92-127 10-48 (50)
20 KOG0509|consensus 68.2 6.4 0.00014 39.9 4.0 59 94-153 325-383 (600)
21 COG1552 RPL40A Ribosomal prote 67.1 1.6 3.5E-05 28.8 -0.2 24 93-116 13-36 (50)
22 PF01363 FYVE: FYVE zinc finge 63.5 3.6 7.8E-05 29.2 1.0 30 90-119 5-36 (69)
23 PF01020 Ribosomal_L40e: Ribos 58.2 4.7 0.0001 27.0 0.7 25 93-117 16-42 (52)
24 PF12773 DZR: Double zinc ribb 54.8 9 0.0002 25.2 1.7 24 92-115 27-50 (50)
25 PF11023 DUF2614: Protein of u 53.4 54 0.0012 25.9 6.0 7 96-102 71-77 (114)
26 smart00064 FYVE Protein presen 50.9 14 0.0003 26.0 2.3 25 94-118 10-36 (68)
27 PF00641 zf-RanBP: Zn-finger i 48.4 5.9 0.00013 23.2 -0.0 21 96-116 6-26 (30)
28 PRK02935 hypothetical protein; 46.3 87 0.0019 24.4 6.0 6 96-101 72-77 (110)
29 PF05814 DUF843: Baculovirus p 46.3 59 0.0013 24.1 4.9 23 240-263 36-58 (83)
30 KOG1315|consensus 46.2 36 0.00078 32.0 4.8 32 91-122 120-151 (307)
31 PF06143 Baculo_11_kDa: Baculo 44.6 84 0.0018 23.5 5.6 35 227-261 36-70 (84)
32 PF07010 Endomucin: Endomucin; 44.3 50 0.0011 29.4 5.0 27 62-88 200-226 (259)
33 KOG1313|consensus 42.9 1.3E+02 0.0028 27.7 7.6 54 91-155 113-166 (309)
34 PF13124 DUF3963: Protein of u 38.4 34 0.00073 21.1 2.2 31 4-34 7-37 (40)
35 KOG1842|consensus 36.4 11 0.00023 36.9 -0.3 26 92-117 178-205 (505)
36 PF07649 C1_3: C1-like domain; 33.0 15 0.00033 21.4 0.1 21 96-116 2-23 (30)
37 KOG1819|consensus 32.6 18 0.00039 35.9 0.6 29 88-116 895-925 (990)
38 COG2093 DNA-directed RNA polym 31.7 27 0.00059 24.4 1.2 23 94-116 4-26 (64)
39 COG4758 Predicted membrane pro 31.2 3.3E+02 0.0072 24.5 8.1 10 137-146 3-12 (235)
40 PF09889 DUF2116: Uncharacteri 28.7 20 0.00043 24.9 0.1 24 93-116 2-26 (59)
41 PLN00186 ribosomal protein S26 28.4 23 0.00051 27.6 0.5 18 108-125 20-37 (109)
42 smart00547 ZnF_RBZ Zinc finger 28.1 31 0.00067 19.1 0.9 21 96-116 4-24 (26)
43 cd00065 FYVE FYVE domain; Zinc 26.9 32 0.0007 23.0 0.9 24 95-118 3-28 (57)
44 PRK09335 30S ribosomal protein 26.4 27 0.00058 26.7 0.5 21 108-128 20-40 (95)
45 KOG3183|consensus 25.6 29 0.00064 31.1 0.6 14 116-129 36-49 (250)
46 PF03107 C1_2: C1 domain; Int 25.5 46 0.00099 19.4 1.3 20 96-115 2-22 (30)
47 PTZ00172 40S ribosomal protein 25.2 28 0.00061 27.2 0.4 18 108-125 20-37 (108)
48 PF09297 zf-NADH-PPase: NADH p 25.2 33 0.00072 20.3 0.6 23 94-116 3-29 (32)
49 PRK03681 hypA hydrogenase nick 24.8 35 0.00075 27.0 0.9 26 91-116 67-95 (114)
50 PF13842 Tnp_zf-ribbon_2: DDE_ 24.4 56 0.0012 19.5 1.5 20 96-115 2-23 (32)
51 PRK14559 putative protein seri 24.3 43 0.00093 34.9 1.7 38 91-130 12-49 (645)
52 KOG3611|consensus 24.2 28 0.00061 36.8 0.3 39 108-146 491-537 (737)
53 smart00661 RPOL9 RNA polymeras 24.1 40 0.00087 22.1 1.0 21 95-115 1-27 (52)
54 KOG1841|consensus 23.6 41 0.00089 36.8 1.4 39 94-144 557-597 (1287)
55 PF01437 PSI: Plexin repeat; 23.6 16 0.00036 24.2 -1.0 18 112-129 6-23 (51)
56 PF08600 Rsm1: Rsm1-like; Int 23.6 41 0.00089 25.4 1.0 10 123-132 56-65 (91)
57 smart00423 PSI domain found in 22.6 35 0.00075 22.0 0.4 16 113-128 6-21 (46)
58 PRK14559 putative protein seri 22.0 51 0.0011 34.4 1.7 26 95-120 28-53 (645)
59 TIGR02745 ccoG_rdxA_fixG cytoc 21.7 1.5E+02 0.0032 29.4 4.7 12 109-120 231-242 (434)
60 KOG1710|consensus 21.2 39 0.00084 31.4 0.6 20 94-115 319-338 (396)
61 PF00539 Tat: Transactivating 20.5 1.5E+02 0.0032 21.3 3.2 7 108-114 36-42 (68)
62 PF07754 DUF1610: Domain of un 20.5 68 0.0015 18.0 1.2 19 97-115 1-23 (24)
63 PHA03164 hypothetical protein; 20.4 1.1E+02 0.0024 22.2 2.6 25 230-254 63-87 (88)
No 1
>KOG1313|consensus
Probab=100.00 E-value=6.9e-52 Score=362.12 Aligned_cols=292 Identities=35% Similarity=0.594 Sum_probs=222.7
Q ss_pred CcccchHHHHHhhhhhccchhhHHHHHHHHHHHHhheeeeeeccccccchhHHHH-HHHHHHHHHHHHHHHHHHhhccCC
Q psy14167 3 HAFVEPIFWVVDSVLISIGPFLTVLVIFISGFTVFIAYWILFPFYRRQSEWLAYT-LAVIGNWILINFVFNYYMGFSTSP 81 (341)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~~~~~~~~~~lp~~~~~~~~~~~~-~~~~~~~l~~~~~~~y~~~~~tdP 81 (341)
|-|..|+.|+++..++-+||+++++|.......+.+.++...|+..........+ ......+++.++++.|+++..+.|
T Consensus 14 ~~c~~pl~~~l~s~~~~~g~~~~~~V~~~~~~~~~t~~fi~~~f~~~~~~~~~~f~~~~l~i~~l~nvi~hy~ka~t~pP 93 (309)
T KOG1313|consen 14 DICLGPLNLVLPSYARCFGPFLVGAVTNQNTVRVETKSFILRPFRDVILAVFMLFLLATLAIYLLSNVIFHYYKARTKPP 93 (309)
T ss_pred hhhhhHHHHhcccccccCCCeEEEEEEeeccchhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeecccCC
Confidence 4477899999999999999999999988888888888888888766444333222 223335788888888999887764
Q ss_pred CCCCCCCCcccccccccccccCCCCCCcCCcccCccccCCCccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14167 82 GHPPKHSVSSKSSDVCKKCLTPKPPRTHHCSICDQCILKMDHHCPWMNHCVGHWNHRYFYMFMIYTLLGCAFLFIIGYRP 161 (341)
Q Consensus 82 G~~p~~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CVlr~DHHCpwi~nCVG~~N~r~FilFL~~~~l~~~~~~~~~~~~ 161 (341)
...+..+....|.+|+.+||||+||||.|||||+||||||||+|||||++|||||++|++|+.+++.++.+.+.+.
T Consensus 94 ----vgn~~~~~~SfC~KC~~pK~prTHHCsiC~kCVL~MDHHCPwinnCVG~~NHryFFlFl~~ltlat~~~~i~~~~~ 169 (309)
T KOG1313|consen 94 ----VGNPGLENDSFCNKCNYPKSPRTHHCSICNKCVLKMDHHCPWINNCVGAHNHRYFFLFLFYLTLATSYAAIMCVYT 169 (309)
T ss_pred ----cCCCCCccccHHhhcCCCCCCCcchhhHHhhHhhccccCCchhhcccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556678889999999999999999999999999999999999999999999999999999999999976654432
Q ss_pred HHHHHHhccCccccccccchhhhccccCCccCcccccccccccCCCCccccchhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy14167 162 AYSILVANSKHFDFHYENVHDVLAAIPEGKLGRRDTMFFRSSFQPMKIPLSYYLETYQFRYKSLMFLSLVLCVIFCAVLT 241 (341)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~~~~~~~l~~ 241 (341)
....+ ..-+....|.++ ...+.+ +|. -..............+.++++.++++++.
T Consensus 170 w~~~l--e~~~~~tay~~d---------------------~~h~~P-p~~-i~r~~~~i~~t~~~~~~fls~~~lv~vg~ 224 (309)
T KOG1313|consen 170 WIDHL--EPIEEITAYASD---------------------VAHVAP-PPS-ILRVYKNITRTSIANLWFLSVRVLVAVGL 224 (309)
T ss_pred HHHhc--chHhhcccccCc---------------------ccccCC-Chh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 22111 100001111000 001111 110 01122333344456677888889999999
Q ss_pred HHHHHHHHHHhCCchHHHHHhHHHHhhhhhcCCcccCCCCcchHhhHHHhccCCCCCcceeeeecCCCCCCCCCCceecc
Q psy14167 242 LSLWHAKLISGGETSVEFLKNKYEMTKKKKEGGTFKNPFDFGWKTNWRIFLGLYGGRTIWRHILLPSTHKPLDNGVTWTT 321 (341)
Q Consensus 242 l~~~h~~li~~n~TTiE~~~~~~~~~~~~~~~~~~~npyd~G~~~N~~~vfG~~~~~~W~~~~~~P~~~~p~~dG~~~~~ 321 (341)
+..||.++|++|.|++|.+++.+++++...++. +||++.|.+.||+.++|..+.+..|.+.++|+.++|.+.|-.|+.
T Consensus 225 l~~W~~vlI~~G~tsi~~~~~~~e~k~~~a~~R--~~~~n~g~k~nWr~fLg~~~~r~~wk~v~lPt~~~p~~~~~~~~~ 302 (309)
T KOG1313|consen 225 LTAWHAVLISRGETSIEQLINIKERKRYLAHLR--SNPTNFGGKANWRNFLGLFRGRHFWKTVLLPTIRKPVKYGDSKEK 302 (309)
T ss_pred HHHHhheeeehhhhhHHHHHHHHHhHhHHHhcc--CCCcccchHHHHHHhhccccCCceeEEEeccccccccccCCcccc
Confidence 999999999999999999999888777655544 899999999999999998888855568999999999999999996
Q ss_pred CccH
Q psy14167 322 SEDI 325 (341)
Q Consensus 322 ~~~~ 325 (341)
++-+
T Consensus 303 ~da~ 306 (309)
T KOG1313|consen 303 SDAY 306 (309)
T ss_pred cchh
Confidence 6543
No 2
>KOG1314|consensus
Probab=100.00 E-value=2.1e-48 Score=350.37 Aligned_cols=231 Identities=28% Similarity=0.487 Sum_probs=174.6
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc-----ccccccccccCCCCCCcCCcccCccccCC
Q psy14167 47 YRRQSEWLAYTLAVIGNWILINFVFNYYMGFSTSPGHPPKHSVSSK-----SSDVCKKCLTPKPPRTHHCSICDQCILKM 121 (341)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~l~~~~~~~y~~~~~tdPG~~p~~~~~~~-----~~~~C~~C~~~kP~Rs~HC~~C~~CVlr~ 121 (341)
+++.++..+..+.+.+.+...++++||+.|++++||++|.++.++. ..++|.+|+.+|+||||||+.|||||.||
T Consensus 39 w~p~ss~~g~~n~i~f~~~~~m~~~ny~~A~~~gPG~vp~~wkPe~~~D~~~lqfCk~CqgYKapRSHHCrkCnrCvmkM 118 (414)
T KOG1314|consen 39 WFPLSSFLGVPNQITFLLWTSMILYNYFNAIFTGPGFVPLGWKPENPKDEMFLQFCKKCQGYKAPRSHHCRKCNRCVMKM 118 (414)
T ss_pred hccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHhhccCcCCCccccchHHHHHHHhh
Confidence 4555666677778888888899999999999999999999887643 35899999999999999999999999999
Q ss_pred CccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccchhhhccccCCccCcccccccc
Q psy14167 122 DHHCPWMNHCVGHWNHRYFYMFMIYTLLGCAFLFIIGYRPAYSILVANSKHFDFHYENVHDVLAAIPEGKLGRRDTMFFR 201 (341)
Q Consensus 122 DHHCpwi~nCVG~~N~r~FilFL~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
||||||+|||||..||.||+.||++..++|+...+...+..+..++..+. ... +...+|.
T Consensus 119 DHHCPWinnCVG~aNh~~F~~FLlf~ivG~ih~tiI~~~~~~~~Iy~~W~--~~~---g~~hlp~--------------- 178 (414)
T KOG1314|consen 119 DHHCPWINNCVGWANHAYFLRFLLFSIVGCIHGTIILVCAQYRGIYFRWY--IKY---GLRHLPI--------------- 178 (414)
T ss_pred ccCCcchhhcccccccHHHHHHHHHHHHhcccceeeehhHHHHHHHHHHH--hhc---ccccCce---------------
Confidence 99999999999999999999999999999887665555555544443210 000 0000000
Q ss_pred cccCCCCccccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHhhhh----hcCCccc
Q psy14167 202 SSFQPMKIPLSYYLETYQFRYKSLMFLSLVLCVIFCAVLTLSLWHAKLISGGETSVEFLKNKYEMTKKK----KEGGTFK 277 (341)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~~~~~~~l~~l~~~h~~li~~n~TTiE~~~~~~~~~~~~----~~~~~~~ 277 (341)
. ........+.++...+.+.+.+++++|++.|+..|.+|+|.||.+.-++...+.+ +..+++.
T Consensus 179 ------------v-~ft~~~li~~vfslgla~gv~la~t~Lf~~qlk~Il~nrt~IE~wi~~Ka~~rr~~~~~d~~~~f~ 245 (414)
T KOG1314|consen 179 ------------V-FFTLSSLIALVFSLGLAIGVVLALTMLFFIQLKQILNNRTGIESWIVEKAMDRREYYFNDDEGEFT 245 (414)
T ss_pred ------------e-eccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhccCCCCcee
Confidence 0 0111123345555566677788889999999999999999999987555444332 3336778
Q ss_pred CCCCcchHhhHHHhccCCCCCcceeeeecCCCCCCCCCCceeccCcc
Q psy14167 278 NPFDFGWKTNWRIFLGLYGGRTIWRHILLPSTHKPLDNGVTWTTSED 324 (341)
Q Consensus 278 npyd~G~~~N~~~vfG~~~~~~W~~~~~~P~~~~p~~dG~~~~~~~~ 324 (341)
.|||+||+.|+++||-. ...+.|||++||+.++
T Consensus 246 ypydlgWr~n~r~vf~~--------------~~~~~gdg~~wPv~~g 278 (414)
T KOG1314|consen 246 YPYDLGWRINLREVFFQ--------------NKKEEGDGIEWPVVEG 278 (414)
T ss_pred eeccccccccHHHHhhh--------------ccccCCCCccccccCc
Confidence 99999999999999951 1236899999999874
No 3
>KOG1315|consensus
Probab=100.00 E-value=2.4e-48 Score=355.54 Aligned_cols=214 Identities=30% Similarity=0.547 Sum_probs=166.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCc-------------------------ccccccccccccCCCCC
Q psy14167 53 WLAYTLAVIGNWILINFVFNYYMGFSTSPGHPPKHSVS-------------------------SKSSDVCKKCLTPKPPR 107 (341)
Q Consensus 53 ~~~~~~~~~~~~l~~~~~~~y~~~~~tdPG~~p~~~~~-------------------------~~~~~~C~~C~~~kP~R 107 (341)
....+.++.+..++++..++|++++++|||.+|..... .+..|+|.+|+.+||+|
T Consensus 43 ~~~~~~ll~~~~ll~m~~~sy~~~vf~~pg~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~R~C~kC~~iKPdR 122 (307)
T KOG1315|consen 43 IPSVLLLLLFHLLLIMFLWSYFRTVFTDPGRVPDSYRPSVEDEDSLENGSDNERDLPGYTRTSDGAVRYCDKCKCIKPDR 122 (307)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHheeEecCCCCccccCCCcCccccccccCcccccceeeEecCCCCceeecccccccCCc
Confidence 44667788889999999999999999999999865422 12569999999999999
Q ss_pred CcCCcccCccccCCCccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccchhhhccc
Q psy14167 108 THHCSICDQCILKMDHHCPWMNHCVGHWNHRYFYMFMIYTLLGCAFLFIIGYRPAYSILVANSKHFDFHYENVHDVLAAI 187 (341)
Q Consensus 108 s~HC~~C~~CVlr~DHHCpwi~nCVG~~N~r~FilFL~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (341)
|||||+|+|||+||||||||+|||||.+|||+|++|++|+.+.+.+.++..+..+.... .. + .
T Consensus 123 aHHCsvC~rCvLKmDHHCpWi~nCVgf~NyKfF~lfl~y~~l~~~~~lv~~~~~~~~~~-~~-~-~-------------- 185 (307)
T KOG1315|consen 123 AHHCSVCNRCVLKMDHHCPWINNCVGFRNYKFFLLFLFYTNLYSIYVLVTTLIGFTKYF-QG-G-A-------------- 185 (307)
T ss_pred cccchhhhhhhhccccCCcceeceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-c-c--------------
Confidence 99999999999999999999999999999999999999999999886665443332221 11 0 0
Q ss_pred cCCccCcccccccccccCCCCccccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHh
Q psy14167 188 PEGKLGRRDTMFFRSSFQPMKIPLSYYLETYQFRYKSLMFLSLVLCVIFCAVLTLSLWHAKLISGGETSVEFLKNKYEMT 267 (341)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~~~~~~~l~~l~~~h~~li~~n~TTiE~~~~~~~~~ 267 (341)
.........+.+++++.+.+++.+++|+++|++||++|+||+|..+...
T Consensus 186 ----------------------------~~~~~~~~~~~~~~~~~~~f~i~l~~~l~~h~~Li~~N~TTiE~~~~~~--- 234 (307)
T KOG1315|consen 186 ----------------------------GPSSLLLFFIVFLFLVAIAFSISLSGLLCFHTYLILKNKTTIEAYKSPV--- 234 (307)
T ss_pred ----------------------------cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhcccc---
Confidence 0011123446666777888888888899999999999999999975431
Q ss_pred hhhhcCCcccCCCCcchHhhHHHhccCCCCCcceeeeecCCCCCCCCCCceeccCcc
Q psy14167 268 KKKKEGGTFKNPFDFGWKTNWRIFLGLYGGRTIWRHILLPSTHKPLDNGVTWTTSED 324 (341)
Q Consensus 268 ~~~~~~~~~~npyd~G~~~N~~~vfG~~~~~~W~~~~~~P~~~~p~~dG~~~~~~~~ 324 (341)
...++..+|.|++ +.|++++|| .+...| ++|.. +..+||.+++.+++
T Consensus 235 --~~~~~~~~~~~~~--~~n~~~vfg-~~~~~w----l~P~~-~s~~~~~~~~~~~~ 281 (307)
T KOG1315|consen 235 --FRSGLHNKNGFNL--YVNFREVFG-SNLLYW----LLPID-SSWGDGVSFPLRGD 281 (307)
T ss_pred --ccccccccCCcce--eecHHHHhC-CCceEE----ecccc-CccccCcccccccc
Confidence 1223455677777 899999999 555555 59976 44588888877754
No 4
>KOG1311|consensus
Probab=100.00 E-value=4e-43 Score=327.84 Aligned_cols=195 Identities=27% Similarity=0.510 Sum_probs=141.6
Q ss_pred cCCCCCCCC-CC-cc-----------------cccccccccccCCCCCCcCCcccCccccCCCccCcccccccccccHHH
Q psy14167 79 TSPGHPPKH-SV-SS-----------------KSSDVCKKCLTPKPPRTHHCSICDQCILKMDHHCPWMNHCVGHWNHRY 139 (341)
Q Consensus 79 tdPG~~p~~-~~-~~-----------------~~~~~C~~C~~~kP~Rs~HC~~C~~CVlr~DHHCpwi~nCVG~~N~r~ 139 (341)
+|||.+|++ .. .+ .+++||.+|+..||||||||++||+||+||||||||+|||||++||||
T Consensus 79 sdpg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~ 158 (299)
T KOG1311|consen 79 SDPGIVPRADDEQIEDPERAPLYKNVDVNGIQVEWKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRY 158 (299)
T ss_pred CCCceecCcccCCCCCccccccCCCcccCCcccceEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHH
Confidence 599999985 11 11 137999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccchhhhccccCCccCcccccccccccCCCCccccchhhhhh
Q psy14167 140 FYMFMIYTLLGCAFLFIIGYRPAYSILVANSKHFDFHYENVHDVLAAIPEGKLGRRDTMFFRSSFQPMKIPLSYYLETYQ 219 (341)
Q Consensus 140 FilFL~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (341)
|++|++++++++++.++++....... ..... .. +.. ....
T Consensus 159 F~~f~~~~~l~~i~~~~~~~~~~~~~-~~~~~-------------~~-----------------~~~---------~~~~ 198 (299)
T KOG1311|consen 159 FVLFLFYLALGVLLALAFLFYELLQR-ADNLK-------------VN-----------------LTP---------VLIP 198 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-ccccc-------------cc-----------------ccc---------cccc
Confidence 99999999999998766544321111 00000 00 000 0000
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHhhhhhcCCcccCCCCcchHhhHHHhccCCCCCc
Q psy14167 220 FRYKSLMFLSLVLCVIFCAVLTLSLWHAKLISGGETSVEFLKNKYEMTKKKKEGGTFKNPFDFGWKTNWRIFLGLYGGRT 299 (341)
Q Consensus 220 ~~~~~~i~l~~l~~~~~~~l~~l~~~h~~li~~n~TTiE~~~~~~~~~~~~~~~~~~~npyd~G~~~N~~~vfG~~~~~~ 299 (341)
......+++.+++++.++.++.|+.+|++++.+|+||+|..++ . ......++||.|.++|++++||.+....
T Consensus 199 ~~~~~~~~l~~~~~~~~~~~~~l~~fh~~li~~~~Tt~e~~~~--~------~~~~~~~~~~~g~~~n~~~~~~~~~~~~ 270 (299)
T KOG1311|consen 199 AGTFLSALLGLLSALFLAFTSALLCFHIYLIKSGSTTYESIKS--L------DFVSRSNPYDLGLLKNLQEVFGGPLPLS 270 (299)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhheeeEecCcchhhhhhc--c------ccccccCCCchhHHHHHHHHhCCCCCcc
Confidence 1223345555677778888889999999999999999998864 0 1111158999999999999999777777
Q ss_pred ceeeeecCCCCC--CCCCCceeccCccH
Q psy14167 300 IWRHILLPSTHK--PLDNGVTWTTSEDI 325 (341)
Q Consensus 300 W~~~~~~P~~~~--p~~dG~~~~~~~~~ 325 (341)
|. .|.... ++.||-.|...+..
T Consensus 271 ~~----~p~~~~~~~p~~~~~~~~~~~~ 294 (299)
T KOG1311|consen 271 WL----SPFARSGPLPHDGEGGPPTPHV 294 (299)
T ss_pred cc----cccccCCCCCCCCCCCCccccc
Confidence 75 554432 46888777766544
No 5
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=100.00 E-value=5.1e-38 Score=271.02 Aligned_cols=149 Identities=32% Similarity=0.742 Sum_probs=114.0
Q ss_pred HHHHHhhccCCCCCCCCC---------C--------------cccccccccccccCCCCCCcCCcccCccccCCCccCcc
Q psy14167 71 FNYYMGFSTSPGHPPKHS---------V--------------SSKSSDVCKKCLTPKPPRTHHCSICDQCILKMDHHCPW 127 (341)
Q Consensus 71 ~~y~~~~~tdPG~~p~~~---------~--------------~~~~~~~C~~C~~~kP~Rs~HC~~C~~CVlr~DHHCpw 127 (341)
++|++++.+|||++|... . .....++|.+|+..||+|||||+.||+||+||||||+|
T Consensus 2 ~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHHC~w 81 (174)
T PF01529_consen 2 WSYFLTIFIDPGYVPRSNPDEDQRQEEKEEEQNQSIDSPEDDENGELKYCSTCKIIKPPRSHHCRVCNRCVLRFDHHCPW 81 (174)
T ss_pred EEehhhheECCcccCCccccccccccccccccchhhhhhccccCCCCEECcccCCcCCCcceeccccccccccccccchh
Confidence 468899999999999871 0 02357999999999999999999999999999999999
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccchhhhccccCCccCcccccccccccCCC
Q psy14167 128 MNHCVGHWNHRYFYMFMIYTLLGCAFLFIIGYRPAYSILVANSKHFDFHYENVHDVLAAIPEGKLGRRDTMFFRSSFQPM 207 (341)
Q Consensus 128 i~nCVG~~N~r~FilFL~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (341)
+|||||++|||+|++|+++..+.+++.++..+.......... . . .
T Consensus 82 ~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~-~-~--~------------------------------- 126 (174)
T PF01529_consen 82 LGNCIGRRNHRYFLLFLLYLCLYCLYFFILSLYYLVRYIPSI-S-F--S------------------------------- 126 (174)
T ss_pred hccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-c-c--c-------------------------------
Confidence 999999999999999999999999987665544332221100 0 0 0
Q ss_pred CccccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHh
Q psy14167 208 KIPLSYYLETYQFRYKSLMFLSLVLCVIFCAVLTLSLWHAKLISGGETSVEFLKN 262 (341)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~i~l~~l~~~~~~~l~~l~~~h~~li~~n~TTiE~~~~ 262 (341)
..........+++++++++.+++++.++++|++++++|+||+|.+++
T Consensus 127 --------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~n~Tt~E~~~~ 173 (174)
T PF01529_consen 127 --------SFWIFSNFSSIFLLIISIFFFIFVGFLLIFQLYLILRNITTYERIKR 173 (174)
T ss_pred --------ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHc
Confidence 00000011124555666777888899999999999999999999854
No 6
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=100.00 E-value=1.7e-36 Score=281.43 Aligned_cols=214 Identities=29% Similarity=0.499 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCC---------------cccccccccccccCCCCCCcCCcccCccccCCCcc
Q psy14167 60 VIGNWILINFVFNYYMGFSTSPGHPPKHSV---------------SSKSSDVCKKCLTPKPPRTHHCSICDQCILKMDHH 124 (341)
Q Consensus 60 ~~~~~l~~~~~~~y~~~~~tdPG~~p~~~~---------------~~~~~~~C~~C~~~kP~Rs~HC~~C~~CVlr~DHH 124 (341)
+...+++....+.|++..++|||+.+++.. .....++|.+|+.+||+|||||+.|||||+|||||
T Consensus 60 i~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~KP~RS~HC~~Cn~CV~k~DHH 139 (309)
T COG5273 60 ILFIVILVLASFSYLLLLVSDPGYLGENITLSGYRETISRLLDDGKFGTENFCSTCNIYKPPRSHHCSICNRCVLKFDHH 139 (309)
T ss_pred hhhhhhhhhHHHhhHHHhhcCCCccCccccccchhhhhhhhhhcCccccceeccccccccCCCCccchhhcchhhccCcc
Confidence 334455667778899999999999985422 13457999999999999999999999999999999
Q ss_pred CcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccchhhhccccCCccCccccccccccc
Q psy14167 125 CPWMNHCVGHWNHRYFYMFMIYTLLGCAFLFIIGYRPAYSILVANSKHFDFHYENVHDVLAAIPEGKLGRRDTMFFRSSF 204 (341)
Q Consensus 125 Cpwi~nCVG~~N~r~FilFL~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (341)
|||+|||||.+|||+|++||+++...+.+.++.......... . .+
T Consensus 140 C~Wi~nCVG~~N~r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~--~-~~-------------------------------- 184 (309)
T COG5273 140 CPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIF--S-IR-------------------------------- 184 (309)
T ss_pred CcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--c-cc--------------------------------
Confidence 999999999999999999999998888875554332211110 0 00
Q ss_pred CCCCccccchhhhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHhhhh-------------
Q psy14167 205 QPMKIPLSYYLETYQFRYKSLMF-LSLVLCVIFCAVLTLSLWHAKLISGGETSVEFLKNKYEMTKKK------------- 270 (341)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~i~-l~~l~~~~~~~l~~l~~~h~~li~~n~TTiE~~~~~~~~~~~~------------- 270 (341)
.. ... ....+++ ...+...+++.+..++.++.+++..|+||+|..+..+..+...
T Consensus 185 ---~~-------~~~-~~~~li~~~~~~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (309)
T COG5273 185 ---HD-------TSL-AICFLIFGCSLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTLEFFPLCRESNLPFT 253 (309)
T ss_pred ---CC-------hHH-HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccceecccccchhccCCcCce
Confidence 00 000 1011222 2344455667778899999999999999999975432211110
Q ss_pred --hcCCcccCCCCcchHhhHHHhccCCCCCcceeeeecCCCCCCCCCCceeccCccH
Q psy14167 271 --KEGGTFKNPFDFGWKTNWRIFLGLYGGRTIWRHILLPSTHKPLDNGVTWTTSEDI 325 (341)
Q Consensus 271 --~~~~~~~npyd~G~~~N~~~vfG~~~~~~W~~~~~~P~~~~p~~dG~~~~~~~~~ 325 (341)
.+..+...|++.|.-+|++.++| .+...|. .|.. .+..++.+++.+++.
T Consensus 254 ~~~d~~~~~~~~~~~~~~~~~~i~~-~~~~~~~----~~~~-~~~~~~~~~~~~~~~ 304 (309)
T COG5273 254 NIFDSSEGALPLDLGIGQNLSTIKG-SNALYWL----TPLH-TNYCNSYDFSLRSDT 304 (309)
T ss_pred eccCCCccccccccCccccceeecC-CCceeec----cccc-cCCCCccCcccchhh
Confidence 11122456888888899999998 6667775 4422 333566666666554
No 7
>KOG1312|consensus
Probab=99.97 E-value=4.1e-31 Score=232.83 Aligned_cols=101 Identities=30% Similarity=0.759 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCc------------ccccccccccccCCCCCCcCCcccCccccCCCc
Q psy14167 56 YTLAVIGNWILINFVFNYYMGFSTSPGHPPKHSVS------------SKSSDVCKKCLTPKPPRTHHCSICDQCILKMDH 123 (341)
Q Consensus 56 ~~~~~~~~~l~~~~~~~y~~~~~tdPG~~p~~~~~------------~~~~~~C~~C~~~kP~Rs~HC~~C~~CVlr~DH 123 (341)
+.+.+....+++.-...+..++.+|||.+.++... ..+...|+||+.+||+||||||.|||||.||||
T Consensus 98 l~~~il~~l~vivp~i~f~ltc~snpg~i~k~n~s~~~~~ypYDy~if~k~~kCSTCki~KPARSKHCsiCNrCV~rfDH 177 (341)
T KOG1312|consen 98 LHYLILPYLLVIVPLIFFTLTCGSNPGIITKANESLFLHVYPYDYVIFPKNVKCSTCKIRKPARSKHCSICNRCVHRFDH 177 (341)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCccchhhhccceeccCccceeecCCCccccccCCCccccccchHHHHHHHHhcc
Confidence 33333333334444456788999999998765432 234589999999999999999999999999999
Q ss_pred cCcccccccccccHHHHHHHHHHHHHHHHHHHH
Q psy14167 124 HCPWMNHCVGHWNHRYFYMFMIYTLLGCAFLFI 156 (341)
Q Consensus 124 HCpwi~nCVG~~N~r~FilFL~~~~l~~~~~~~ 156 (341)
||.|+|||||++|+|||++||++...++.++++
T Consensus 178 HCiWiNNCIG~~N~ryF~lFLL~~i~l~~yaiv 210 (341)
T KOG1312|consen 178 HCIWINNCIGAWNIRYFLLFLLTLISLATYAIV 210 (341)
T ss_pred ceEeeecccccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888887553
No 8
>KOG0509|consensus
Probab=99.96 E-value=5.4e-29 Score=241.32 Aligned_cols=88 Identities=34% Similarity=0.836 Sum_probs=74.9
Q ss_pred HHHHHhhccCCCCCCCCCCc-------------cccc-ccccccccCCCCCCcCCcccCccccCCCccCccccccccccc
Q psy14167 71 FNYYMGFSTSPGHPPKHSVS-------------SKSS-DVCKKCLTPKPPRTHHCSICDQCILKMDHHCPWMNHCVGHWN 136 (341)
Q Consensus 71 ~~y~~~~~tdPG~~p~~~~~-------------~~~~-~~C~~C~~~kP~Rs~HC~~C~~CVlr~DHHCpwi~nCVG~~N 136 (341)
+++.+...+|||++|...+. .... ++|.+|.++||.|||||++|||||.||||||||++||||.+|
T Consensus 383 ~~f~~~~rsDPg~i~~~~~~~~~tIs~l~d~gkf~~en~FC~~clirKp~rSkhc~vcnrcVarfDHhCPwi~ncVG~kN 462 (600)
T KOG0509|consen 383 ITFGLFLRSDPGFIPTSTEVGRETISQLIDFGKFDLENRFCLTCLIRKPLRSKHCSVCNRCVARFDHHCPWIGNCVGLKN 462 (600)
T ss_pred HHHHHHhccCCCCCCCchhhHHHHHHHhhccccccccccceeeeeeecCCccchhhhhHHHHhccccCCCccccccCccc
Confidence 34566677999999876532 1223 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14167 137 HRYFYMFMIYTLLGCAFLFIIG 158 (341)
Q Consensus 137 ~r~FilFL~~~~l~~~~~~~~~ 158 (341)
||+|+.|++.+...+.+.++..
T Consensus 463 h~~F~~Fl~~l~~~~~~~l~~~ 484 (600)
T KOG0509|consen 463 HRLFVFFLLTLLTVIVFYLYLC 484 (600)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988887755443
No 9
>KOG1314|consensus
Probab=92.89 E-value=1.9 Score=40.64 Aligned_cols=75 Identities=19% Similarity=0.323 Sum_probs=52.2
Q ss_pred HHHhhccCCCCCCCCCC--------------cccccccccccccCCCCCCcCCcccCccccCCCccCcccccccccccHH
Q psy14167 73 YYMGFSTSPGHPPKHSV--------------SSKSSDVCKKCLTPKPPRTHHCSICDQCILKMDHHCPWMNHCVGHWNHR 138 (341)
Q Consensus 73 y~~~~~tdPG~~p~~~~--------------~~~~~~~C~~C~~~kP~Rs~HC~~C~~CVlr~DHHCpwi~nCVG~~N~r 138 (341)
+.---+..+|.-|+... ..+..+.|++|++=.-.--|||.--|.||.-..| .-.-
T Consensus 70 ~~gPG~vp~~wkPe~~~D~~~lqfCk~CqgYKapRSHHCrkCnrCvmkMDHHCPWinnCVG~aNh-----------~~F~ 138 (414)
T KOG1314|consen 70 FTGPGFVPLGWKPENPKDEMFLQFCKKCQGYKAPRSHHCRKCNRCVMKMDHHCPWINNCVGWANH-----------AYFL 138 (414)
T ss_pred hcCCCCCCCCCCCCCChhHHHHHHHhhccCcCCCccccchHHHHHHHhhccCCcchhhccccccc-----------HHHH
Confidence 44566788888774321 1355688999987777778999999999984443 4578
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14167 139 YFYMFMIYTLLGCAFLFIIG 158 (341)
Q Consensus 139 ~FilFL~~~~l~~~~~~~~~ 158 (341)
+|++|.+...+.....++.+
T Consensus 139 ~FLlf~ivG~ih~tiI~~~~ 158 (414)
T KOG1314|consen 139 RFLLFSIVGCIHGTIILVCA 158 (414)
T ss_pred HHHHHHHHhcccceeeehhH
Confidence 99999998655444333333
No 10
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=92.01 E-value=1.6 Score=41.02 Aligned_cols=52 Identities=25% Similarity=0.511 Sum_probs=40.5
Q ss_pred CCCCCcCCcccCccccCCCccCcccccccccccHH-----------HHHHHHHHHHHHHHHHH
Q psy14167 104 KPPRTHHCSICDQCILKMDHHCPWMNHCVGHWNHR-----------YFYMFMIYTLLGCAFLF 155 (341)
Q Consensus 104 kP~Rs~HC~~C~~CVlr~DHHCpwi~nCVG~~N~r-----------~FilFL~~~~l~~~~~~ 155 (341)
+-.+.+.|+.|+.-...+-|||.--|.||-..-|. -.=.|..++......++
T Consensus 105 ~~~~~~~C~~C~~~KP~RS~HC~~Cn~CV~k~DHHC~Wi~nCVG~~N~r~F~~Fl~~~~~~~~ 167 (309)
T COG5273 105 KFGTENFCSTCNIYKPPRSHHCSICNRCVLKFDHHCPWINNCVGFRNYRFFYQFLLYTILVAL 167 (309)
T ss_pred ccccceeccccccccCCCCccchhhcchhhccCccCcccccccCcchHHHHHHHHHHHHHHHH
Confidence 44568899999999999999999999999988775 33467766665555533
No 11
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=89.84 E-value=0.19 Score=27.92 Aligned_cols=21 Identities=19% Similarity=0.572 Sum_probs=19.1
Q ss_pred cccccccCCCCCCcCCcccCc
Q psy14167 96 VCKKCLTPKPPRTHHCSICDQ 116 (341)
Q Consensus 96 ~C~~C~~~kP~Rs~HC~~C~~ 116 (341)
+|+.|....++.++.|+.|+.
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~ 21 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGT 21 (23)
T ss_pred CCcccCCCCCCcCcchhhhCC
Confidence 699999999999999999985
No 12
>KOG1311|consensus
Probab=88.26 E-value=2.7 Score=39.25 Aligned_cols=41 Identities=24% Similarity=0.617 Sum_probs=36.4
Q ss_pred CcCCcccCccccCCCccCcccccccccccH-----------HHHHHHHHHHH
Q psy14167 108 THHCSICDQCILKMDHHCPWMNHCVGHWNH-----------RYFYMFMIYTL 148 (341)
Q Consensus 108 s~HC~~C~~CVlr~DHHCpwi~nCVG~~N~-----------r~FilFL~~~~ 148 (341)
.++|..|+..+.++-|||+.=|+||-..-| |-+-.|+.++.
T Consensus 113 ~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~ 164 (299)
T KOG1311|consen 113 WKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLF 164 (299)
T ss_pred eEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHH
Confidence 799999999999999999999999998876 46678886665
No 13
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=86.01 E-value=5.5 Score=33.61 Aligned_cols=35 Identities=29% Similarity=0.563 Sum_probs=22.0
Q ss_pred CCCCCcCCcccCccccCCCccCcccccccccccHH
Q psy14167 104 KPPRTHHCSICDQCILKMDHHCPWMNHCVGHWNHR 138 (341)
Q Consensus 104 kP~Rs~HC~~C~~CVlr~DHHCpwi~nCVG~~N~r 138 (341)
...+.+.|+.|+.=...+-|||..-+.||-+..|.
T Consensus 44 ~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHH 78 (174)
T PF01529_consen 44 ENGELKYCSTCKIIKPPRSHHCRVCNRCVLRFDHH 78 (174)
T ss_pred cCCCCEECcccCCcCCCcceecccccccccccccc
Confidence 34445666666666666666666666666666654
No 14
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=84.58 E-value=0.57 Score=26.76 Aligned_cols=23 Identities=22% Similarity=0.613 Sum_probs=19.7
Q ss_pred cccccccccCCCCCCcCCcccCc
Q psy14167 94 SDVCKKCLTPKPPRTHHCSICDQ 116 (341)
Q Consensus 94 ~~~C~~C~~~kP~Rs~HC~~C~~ 116 (341)
.++|+.|....++-++.|+.||.
T Consensus 2 ~~~Cp~Cg~~~~~~~~fC~~CG~ 24 (26)
T PF13248_consen 2 EMFCPNCGAEIDPDAKFCPNCGA 24 (26)
T ss_pred cCCCcccCCcCCcccccChhhCC
Confidence 36799999988999999999875
No 15
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=83.38 E-value=0.67 Score=30.50 Aligned_cols=24 Identities=25% Similarity=0.746 Sum_probs=21.5
Q ss_pred ccccccccccCCCCCCcCCcccCc
Q psy14167 93 SSDVCKKCLTPKPPRTHHCSICDQ 116 (341)
Q Consensus 93 ~~~~C~~C~~~kP~Rs~HC~~C~~ 116 (341)
....|..|...-|+||..|+.|+.
T Consensus 13 ~k~ICrkC~ARnp~~A~~CRKCg~ 36 (48)
T PRK04136 13 NKKICMRCNARNPWRATKCRKCGY 36 (48)
T ss_pred cccchhcccCCCCccccccccCCC
Confidence 457899999999999999998875
No 16
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=75.58 E-value=2.1 Score=44.34 Aligned_cols=28 Identities=43% Similarity=0.839 Sum_probs=21.4
Q ss_pred cccccccccCCC-------CCCcCCcccCc-----cccCC
Q psy14167 94 SDVCKKCLTPKP-------PRTHHCSICDQ-----CILKM 121 (341)
Q Consensus 94 ~~~C~~C~~~kP-------~Rs~HC~~C~~-----CVlr~ 121 (341)
...|..|+..-. -|-||||.||+ |..++
T Consensus 460 SdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnR 499 (1374)
T PTZ00303 460 SDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKR 499 (1374)
T ss_pred CCcccCcCCcccccccccccccccccCCccccCccccCCc
Confidence 467999997764 39999999877 66544
No 17
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=72.93 E-value=1.8 Score=29.56 Aligned_cols=36 Identities=33% Similarity=0.943 Sum_probs=28.0
Q ss_pred cccccccCCCCCC-------cCCcccCccccCC-CccCccccccccc
Q psy14167 96 VCKKCLTPKPPRT-------HHCSICDQCILKM-DHHCPWMNHCVGH 134 (341)
Q Consensus 96 ~C~~C~~~kP~Rs-------~HC~~C~~CVlr~-DHHCpwi~nCVG~ 134 (341)
-|..|..--|+-| +-|..|..|+..+ +++|| ||=|.
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~~CP---NCgGe 50 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLNGVCP---NCGGE 50 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcCcCc---CCCCc
Confidence 4666776666654 6788999999999 99999 77664
No 18
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=72.23 E-value=2.3 Score=24.31 Aligned_cols=22 Identities=23% Similarity=0.692 Sum_probs=18.7
Q ss_pred ccccccccCCCCCCcCCcccCc
Q psy14167 95 DVCKKCLTPKPPRTHHCSICDQ 116 (341)
Q Consensus 95 ~~C~~C~~~kP~Rs~HC~~C~~ 116 (341)
+.|+.|....|.-++-|..||.
T Consensus 1 K~CP~C~~~V~~~~~~Cp~CG~ 22 (26)
T PF10571_consen 1 KTCPECGAEVPESAKFCPHCGY 22 (26)
T ss_pred CcCCCCcCCchhhcCcCCCCCC
Confidence 4699999999999999988874
No 19
>PF12773 DZR: Double zinc ribbon
Probab=68.81 E-value=5.4 Score=26.31 Aligned_cols=36 Identities=25% Similarity=0.559 Sum_probs=24.8
Q ss_pred cccccccccccCCC---CCCcCCcccCccccCCCccCcc
Q psy14167 92 KSSDVCKKCLTPKP---PRTHHCSICDQCILKMDHHCPW 127 (341)
Q Consensus 92 ~~~~~C~~C~~~kP---~Rs~HC~~C~~CVlr~DHHCpw 127 (341)
+..++|..|....+ .....|..|+.=+...+.+|+.
T Consensus 10 ~~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~~~fC~~ 48 (50)
T PF12773_consen 10 DDAKFCPHCGTPLPPPDQSKKICPNCGAENPPNAKFCPN 48 (50)
T ss_pred ccccCChhhcCChhhccCCCCCCcCCcCCCcCCcCccCc
Confidence 45677888876666 3356688888777777777763
No 20
>KOG0509|consensus
Probab=68.24 E-value=6.4 Score=39.95 Aligned_cols=59 Identities=8% Similarity=-0.067 Sum_probs=48.8
Q ss_pred cccccccccCCCCCCcCCcccCccccCCCccCcccccccccccHHHHHHHHHHHHHHHHH
Q psy14167 94 SDVCKKCLTPKPPRTHHCSICDQCILKMDHHCPWMNHCVGHWNHRYFYMFMIYTLLGCAF 153 (341)
Q Consensus 94 ~~~C~~C~~~kP~Rs~HC~~C~~CVlr~DHHCpwi~nCVG~~N~r~FilFL~~~~l~~~~ 153 (341)
...|.+|....+.+..++..+-.++..+++||+|+. +|+-+|-..|-...+...+...+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fw~~~~w~~-~i~~~~~~~~~~~~i~~~l~~~~ 383 (600)
T KOG0509|consen 325 TCLCATRKIVGFLLRPPLLSGFFLSTLFWFYYFWFS-KITPYTLFDFHYCFIISVLAYFI 383 (600)
T ss_pred heeccchhhccccccchhHHHHHHHHHHHHHHhhhe-eccchhhhhhHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999999 99999988666555544444443
No 21
>COG1552 RPL40A Ribosomal protein L40E [Translation, ribosomal structure and biogenesis]
Probab=67.07 E-value=1.6 Score=28.80 Aligned_cols=24 Identities=29% Similarity=1.018 Sum_probs=20.8
Q ss_pred ccccccccccCCCCCCcCCcccCc
Q psy14167 93 SSDVCKKCLTPKPPRTHHCSICDQ 116 (341)
Q Consensus 93 ~~~~C~~C~~~kP~Rs~HC~~C~~ 116 (341)
..+.|..|...-|+|+.-|+.|+.
T Consensus 13 ~kkIC~rC~Arnp~~A~kCRkC~~ 36 (50)
T COG1552 13 NKKICRRCYARNPPRATKCRKCGY 36 (50)
T ss_pred hHHHHHHhcCCCCcchhHHhhccC
Confidence 346799999999999999998865
No 22
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=63.47 E-value=3.6 Score=29.17 Aligned_cols=30 Identities=23% Similarity=0.546 Sum_probs=14.9
Q ss_pred ccccccccccccc--CCCCCCcCCcccCcccc
Q psy14167 90 SSKSSDVCKKCLT--PKPPRTHHCSICDQCIL 119 (341)
Q Consensus 90 ~~~~~~~C~~C~~--~kP~Rs~HC~~C~~CVl 119 (341)
+......|..|+. .--.|-|||+.||+-|=
T Consensus 5 ~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC 36 (69)
T PF01363_consen 5 PDSEASNCMICGKKFSLFRRRHHCRNCGRVVC 36 (69)
T ss_dssp SGGG-SB-TTT--B-BSSS-EEE-TTT--EEE
T ss_pred CCCCCCcCcCcCCcCCCceeeEccCCCCCEEC
Confidence 3455678888874 23478899999998553
No 23
>PF01020 Ribosomal_L40e: Ribosomal L40e family; InterPro: IPR001975 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the L40 ribosomal protein from both archaea and eukaryotes. Bovine ribosomal protein L40 has been identified as a secondary RNA binding protein []. L40 is fused to a ubiquitin protein [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZS_p 3IZR_p 2AYJ_A 4A1B_K 4A19_K 4A18_K 4A1D_K.
Probab=58.20 E-value=4.7 Score=27.05 Aligned_cols=25 Identities=32% Similarity=0.942 Sum_probs=16.7
Q ss_pred ccccccccccCCCCCCcCCcc--cCcc
Q psy14167 93 SSDVCKKCLTPKPPRTHHCSI--CDQC 117 (341)
Q Consensus 93 ~~~~C~~C~~~kP~Rs~HC~~--C~~C 117 (341)
....|..|...-||||..|+. ||.+
T Consensus 16 ~k~ICrkCyarl~~~A~nCRKkkCGhs 42 (52)
T PF01020_consen 16 DKMICRKCYARLPPRATNCRKKKCGHS 42 (52)
T ss_dssp S-EEETTT--EE-TTSSS-TSSSCTS-
T ss_pred cceecccccCcCCCCccceecccCCCC
Confidence 357899999999999999998 7764
No 24
>PF12773 DZR: Double zinc ribbon
Probab=54.76 E-value=9 Score=25.19 Aligned_cols=24 Identities=29% Similarity=0.894 Sum_probs=21.1
Q ss_pred cccccccccccCCCCCCcCCcccC
Q psy14167 92 KSSDVCKKCLTPKPPRTHHCSICD 115 (341)
Q Consensus 92 ~~~~~C~~C~~~kP~Rs~HC~~C~ 115 (341)
....+|..|....++.+++|..|+
T Consensus 27 ~~~~~C~~Cg~~~~~~~~fC~~CG 50 (50)
T PF12773_consen 27 QSKKICPNCGAENPPNAKFCPNCG 50 (50)
T ss_pred CCCCCCcCCcCCCcCCcCccCccc
Confidence 446789999999999999999886
No 25
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=53.43 E-value=54 Score=25.87 Aligned_cols=7 Identities=29% Similarity=0.809 Sum_probs=4.4
Q ss_pred ccccccc
Q psy14167 96 VCKKCLT 102 (341)
Q Consensus 96 ~C~~C~~ 102 (341)
.|+.|+.
T Consensus 71 ~CP~C~K 77 (114)
T PF11023_consen 71 ECPNCGK 77 (114)
T ss_pred ECCCCCC
Confidence 3777764
No 26
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=48.36 E-value=5.9 Score=23.19 Aligned_cols=21 Identities=24% Similarity=0.710 Sum_probs=14.5
Q ss_pred cccccccCCCCCCcCCcccCc
Q psy14167 96 VCKKCLTPKPPRTHHCSICDQ 116 (341)
Q Consensus 96 ~C~~C~~~kP~Rs~HC~~C~~ 116 (341)
.|..|...-++++.+|..|+.
T Consensus 6 ~C~~C~~~N~~~~~~C~~C~~ 26 (30)
T PF00641_consen 6 KCPSCTFMNPASRSKCVACGA 26 (30)
T ss_dssp EETTTTEEEESSSSB-TTT--
T ss_pred cCCCCcCCchHHhhhhhCcCC
Confidence 478888888888888888764
No 28
>PRK02935 hypothetical protein; Provisional
Probab=46.34 E-value=87 Score=24.43 Aligned_cols=6 Identities=33% Similarity=1.265 Sum_probs=3.3
Q ss_pred cccccc
Q psy14167 96 VCKKCL 101 (341)
Q Consensus 96 ~C~~C~ 101 (341)
.|+.|+
T Consensus 72 ~CP~C~ 77 (110)
T PRK02935 72 ICPSCE 77 (110)
T ss_pred ECCCCC
Confidence 455555
No 29
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=46.34 E-value=59 Score=24.14 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhCCchHHHHHhH
Q psy14167 240 LTLSLWHAKLISGGETSVEFLKNK 263 (341)
Q Consensus 240 ~~l~~~h~~li~~n~TTiE~~~~~ 263 (341)
..+++.|+|.+ +.+++.+.+.++
T Consensus 36 iF~~~L~~yy~-kteS~~~dL~t~ 58 (83)
T PF05814_consen 36 IFFCVLQVYYI-KTESTPQDLQTE 58 (83)
T ss_pred HHHHHHHHHHc-CCCCcHHHHhhh
Confidence 44567788877 777777766444
No 30
>KOG1315|consensus
Probab=46.18 E-value=36 Score=31.98 Aligned_cols=32 Identities=19% Similarity=0.421 Sum_probs=23.9
Q ss_pred ccccccccccccCCCCCCcCCcccCccccCCC
Q psy14167 91 SKSSDVCKKCLTPKPPRTHHCSICDQCILKMD 122 (341)
Q Consensus 91 ~~~~~~C~~C~~~kP~Rs~HC~~C~~CVlr~D 122 (341)
++..+.|+.|+.=.-..-|||..-|+||.-.+
T Consensus 120 PdRaHHCsvC~rCvLKmDHHCpWi~nCVgf~N 151 (307)
T KOG1315|consen 120 PDRAHHCSVCNRCVLKMDHHCPWINNCVGFRN 151 (307)
T ss_pred CCccccchhhhhhhhccccCCcceeceecccc
Confidence 34567888887777777888888888887433
No 31
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=44.56 E-value=84 Score=23.50 Aligned_cols=35 Identities=11% Similarity=0.233 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHH
Q psy14167 227 FLSLVLCVIFCAVLTLSLWHAKLISGGETSVEFLK 261 (341)
Q Consensus 227 ~l~~l~~~~~~~l~~l~~~h~~li~~n~TTiE~~~ 261 (341)
|++++|.++.+.+..+++.-++.|.+|.-..|..+
T Consensus 36 FvLVic~~lVfVii~lFi~ll~~i~~~~e~~~~~~ 70 (84)
T PF06143_consen 36 FVLVICCFLVFVIIVLFILLLYNINKNAEQDRAER 70 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34455555555555555555566666654444433
No 32
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=44.27 E-value=50 Score=29.40 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCC
Q psy14167 62 GNWILINFVFNYYMGFSTSPGHPPKHS 88 (341)
Q Consensus 62 ~~~l~~~~~~~y~~~~~tdPG~~p~~~ 88 (341)
...+.+.++..|.+|..+|||.+..+.
T Consensus 200 itl~vf~LvgLyr~C~k~dPg~p~~g~ 226 (259)
T PF07010_consen 200 ITLSVFTLVGLYRMCWKTDPGTPENGP 226 (259)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCcccCC
Confidence 334555566678889999999765443
No 33
>KOG1313|consensus
Probab=42.86 E-value=1.3e+02 Score=27.74 Aligned_cols=54 Identities=19% Similarity=0.367 Sum_probs=40.4
Q ss_pred ccccccccccccCCCCCCcCCcccCccccCCCccCcccccccccccHHHHHHHHHHHHHHHHHHH
Q psy14167 91 SKSSDVCKKCLTPKPPRTHHCSICDQCILKMDHHCPWMNHCVGHWNHRYFYMFMIYTLLGCAFLF 155 (341)
Q Consensus 91 ~~~~~~C~~C~~~kP~Rs~HC~~C~~CVlr~DHHCpwi~nCVG~~N~r~FilFL~~~~l~~~~~~ 155 (341)
.+..+.|+.|+.=.-.--|||.--|+||.-..| +-.=.|+.++.-.+..+.+..
T Consensus 113 ~prTHHCsiC~kCVL~MDHHCPwinnCVG~~NH-----------ryFFlFl~~ltlat~~~~i~~ 166 (309)
T KOG1313|consen 113 SPRTHHCSICNKCVLKMDHHCPWINNCVGAHNH-----------RYFFLFLFYLTLATSYAAIMC 166 (309)
T ss_pred CCCcchhhHHhhHhhccccCCchhhcccccccc-----------hhHHHHHHHHHHHHHHHHHHH
Confidence 456788999998777778999999999997666 445568888765555554443
No 34
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=38.39 E-value=34 Score=21.06 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=20.0
Q ss_pred cccchHHHHHhhhhhccchhhHHHHHHHHHH
Q psy14167 4 AFVEPIFWVVDSVLISIGPFLTVLVIFISGF 34 (341)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~ 34 (341)
+|++.+|.=..+.+|-+-.+|..+++.+++.
T Consensus 7 ~fieryfddiqkwirnit~cfal~vv~lvsl 37 (40)
T PF13124_consen 7 AFIERYFDDIQKWIRNITFCFALLVVVLVSL 37 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777666666666666666666665543
No 35
>KOG1842|consensus
Probab=36.45 E-value=11 Score=36.89 Aligned_cols=26 Identities=31% Similarity=0.851 Sum_probs=20.2
Q ss_pred cccccccccccC--CCCCCcCCcccCcc
Q psy14167 92 KSSDVCKKCLTP--KPPRTHHCSICDQC 117 (341)
Q Consensus 92 ~~~~~C~~C~~~--kP~Rs~HC~~C~~C 117 (341)
.....|+.|... ---|-|||+.||+-
T Consensus 178 s~V~~CP~Ca~~F~l~rRrHHCRLCG~V 205 (505)
T KOG1842|consen 178 SSVQFCPECANSFGLTRRRHHCRLCGRV 205 (505)
T ss_pred CcccccccccchhhhHHHhhhhhhcchH
Confidence 456899999843 35688999999984
No 36
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=32.96 E-value=15 Score=21.40 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=8.8
Q ss_pred cccccccCCCC-CCcCCcccCc
Q psy14167 96 VCKKCLTPKPP-RTHHCSICDQ 116 (341)
Q Consensus 96 ~C~~C~~~kP~-Rs~HC~~C~~ 116 (341)
.|..|+..... ...+|..|+-
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf 23 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDF 23 (30)
T ss_dssp --TTTS----S--EEE-TTT--
T ss_pred cCCcCCCcCCCCceEECccCCC
Confidence 57778776666 7788888864
No 37
>KOG1819|consensus
Probab=32.59 E-value=18 Score=35.85 Aligned_cols=29 Identities=28% Similarity=0.677 Sum_probs=20.1
Q ss_pred CCcccccccccccccCC--CCCCcCCcccCc
Q psy14167 88 SVSSKSSDVCKKCLTPK--PPRTHHCSICDQ 116 (341)
Q Consensus 88 ~~~~~~~~~C~~C~~~k--P~Rs~HC~~C~~ 116 (341)
+-+.+....|..|+.+- --|-|||+.||.
T Consensus 895 wipd~~a~~cmacq~pf~afrrrhhcrncgg 925 (990)
T KOG1819|consen 895 WIPDEDAEQCMACQMPFNAFRRRHHCRNCGG 925 (990)
T ss_pred cCCCCcchhhhhccCcHHHHHHhhhhcccCc
Confidence 33345567888898643 347899999887
No 38
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=31.69 E-value=27 Score=24.45 Aligned_cols=23 Identities=30% Similarity=0.834 Sum_probs=20.1
Q ss_pred cccccccccCCCCCCcCCcccCc
Q psy14167 94 SDVCKKCLTPKPPRTHHCSICDQ 116 (341)
Q Consensus 94 ~~~C~~C~~~kP~Rs~HC~~C~~ 116 (341)
.+-|..|....|+-+.-|.+|+.
T Consensus 4 ~kAC~~Ck~l~~~d~e~CP~Cgs 26 (64)
T COG2093 4 EKACKNCKRLTPEDTEICPVCGS 26 (64)
T ss_pred hHHHhhccccCCCCCccCCCCCC
Confidence 35699999999999999999986
No 39
>COG4758 Predicted membrane protein [Function unknown]
Probab=31.23 E-value=3.3e+02 Score=24.47 Aligned_cols=10 Identities=20% Similarity=0.504 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q psy14167 137 HRYFYMFMIY 146 (341)
Q Consensus 137 ~r~FilFL~~ 146 (341)
++....|+.-
T Consensus 3 kk~~~~~Ii~ 12 (235)
T COG4758 3 KKKIFGFIIA 12 (235)
T ss_pred hhHHHHHHHH
Confidence 3444444433
No 40
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=28.70 E-value=20 Score=24.93 Aligned_cols=24 Identities=33% Similarity=0.827 Sum_probs=18.7
Q ss_pred ccccccccccCCCCCCcCCc-ccCc
Q psy14167 93 SSDVCKKCLTPKPPRTHHCS-ICDQ 116 (341)
Q Consensus 93 ~~~~C~~C~~~kP~Rs~HC~-~C~~ 116 (341)
+.+.|..|....|+--..|| .|+.
T Consensus 2 ~HkHC~~CG~~Ip~~~~fCS~~C~~ 26 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPDESFCSPKCRE 26 (59)
T ss_pred CCCcCCcCCCcCCcchhhhCHHHHH
Confidence 45788999988888888886 6665
No 41
>PLN00186 ribosomal protein S26; Provisional
Probab=28.41 E-value=23 Score=27.63 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=13.4
Q ss_pred CcCCcccCccccCCCccC
Q psy14167 108 THHCSICDQCILKMDHHC 125 (341)
Q Consensus 108 s~HC~~C~~CVlr~DHHC 125 (341)
.-||..|++||.|=---+
T Consensus 20 ~V~C~nCgr~vPKDKAIk 37 (109)
T PLN00186 20 RIRCSNCGKCVPKDKAIK 37 (109)
T ss_pred ceeeCCCcccccccceEE
Confidence 458999999999744333
No 42
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=28.11 E-value=31 Score=19.13 Aligned_cols=21 Identities=19% Similarity=0.491 Sum_probs=16.6
Q ss_pred cccccccCCCCCCcCCcccCc
Q psy14167 96 VCKKCLTPKPPRTHHCSICDQ 116 (341)
Q Consensus 96 ~C~~C~~~kP~Rs~HC~~C~~ 116 (341)
.|..|.....+++..|..|+.
T Consensus 4 ~C~~C~~~N~~~~~~C~~C~~ 24 (26)
T smart00547 4 ECPACTFLNFASRSKCFACGA 24 (26)
T ss_pred cCCCCCCcChhhhccccccCC
Confidence 478888888888888888764
No 43
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=26.85 E-value=32 Score=23.01 Aligned_cols=24 Identities=29% Similarity=0.707 Sum_probs=16.2
Q ss_pred cccccccc--CCCCCCcCCcccCccc
Q psy14167 95 DVCKKCLT--PKPPRTHHCSICDQCI 118 (341)
Q Consensus 95 ~~C~~C~~--~kP~Rs~HC~~C~~CV 118 (341)
+.|..|+. -.-.|.|||+.|++-+
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~ 28 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIF 28 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCc
Confidence 34666653 3456889999998753
No 44
>PRK09335 30S ribosomal protein S26e; Provisional
Probab=26.41 E-value=27 Score=26.68 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=15.9
Q ss_pred CcCCcccCccccCCCccCccc
Q psy14167 108 THHCSICDQCILKMDHHCPWM 128 (341)
Q Consensus 108 s~HC~~C~~CVlr~DHHCpwi 128 (341)
.-+|..|++||+|----+.+.
T Consensus 20 ~V~C~nCgr~vPKDKAIkrf~ 40 (95)
T PRK09335 20 YVQCDNCGRRVPRDKAVCVTK 40 (95)
T ss_pred cEEeCCCCCcCcCCceEEEEE
Confidence 457999999999866666543
No 45
>KOG3183|consensus
Probab=25.59 E-value=29 Score=31.07 Aligned_cols=14 Identities=29% Similarity=0.321 Sum_probs=11.2
Q ss_pred ccccCCCccCcccc
Q psy14167 116 QCILKMDHHCPWMN 129 (341)
Q Consensus 116 ~CVlr~DHHCpwi~ 129 (341)
-=..+.+|||||..
T Consensus 36 eHrsye~H~Cp~~~ 49 (250)
T KOG3183|consen 36 EHRSYESHHCPKGL 49 (250)
T ss_pred ccchHhhcCCCccc
Confidence 34678999999874
No 46
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=25.46 E-value=46 Score=19.42 Aligned_cols=20 Identities=30% Similarity=0.492 Sum_probs=13.8
Q ss_pred cccccccCCCCC-CcCCcccC
Q psy14167 96 VCKKCLTPKPPR-THHCSICD 115 (341)
Q Consensus 96 ~C~~C~~~kP~R-s~HC~~C~ 115 (341)
.|..|+...... ..||+.|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~ 22 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECC 22 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCC
Confidence 467777666666 77777766
No 47
>PTZ00172 40S ribosomal protein S26; Provisional
Probab=25.18 E-value=28 Score=27.18 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=13.4
Q ss_pred CcCCcccCccccCCCccC
Q psy14167 108 THHCSICDQCILKMDHHC 125 (341)
Q Consensus 108 s~HC~~C~~CVlr~DHHC 125 (341)
.-+|..|++||.|=---+
T Consensus 20 ~V~C~nCgr~vPKDKAIk 37 (108)
T PTZ00172 20 PVRCSNCGRCVPKDKAIK 37 (108)
T ss_pred cEEeCCccccccccceEE
Confidence 457999999999844344
No 48
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=25.16 E-value=33 Score=20.30 Aligned_cols=23 Identities=22% Similarity=0.686 Sum_probs=10.7
Q ss_pred cccccccccC----CCCCCcCCcccCc
Q psy14167 94 SDVCKKCLTP----KPPRTHHCSICDQ 116 (341)
Q Consensus 94 ~~~C~~C~~~----kP~Rs~HC~~C~~ 116 (341)
.+||..|... .-.++..|..|+.
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 4788888642 2335666666653
No 49
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=24.81 E-value=35 Score=27.04 Aligned_cols=26 Identities=19% Similarity=0.457 Sum_probs=19.3
Q ss_pred ccccccccccccCCCCCCcC---CcccCc
Q psy14167 91 SKSSDVCKKCLTPKPPRTHH---CSICDQ 116 (341)
Q Consensus 91 ~~~~~~C~~C~~~kP~Rs~H---C~~C~~ 116 (341)
.+..-+|..|+..-|...++ |..|+.
T Consensus 67 ~p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs 95 (114)
T PRK03681 67 QEAECWCETCQQYVTLLTQRVRRCPQCHG 95 (114)
T ss_pred eCcEEEcccCCCeeecCCccCCcCcCcCC
Confidence 45678999999887775554 888874
No 50
>PF13842 Tnp_zf-ribbon_2: DDE_Tnp_1-like zinc-ribbon
Probab=24.42 E-value=56 Score=19.53 Aligned_cols=20 Identities=45% Similarity=0.846 Sum_probs=11.5
Q ss_pred cccccccCCCCC-C-cCCcccC
Q psy14167 96 VCKKCLTPKPPR-T-HHCSICD 115 (341)
Q Consensus 96 ~C~~C~~~kP~R-s-~HC~~C~ 115 (341)
.|..|...+..+ + +-|+.|+
T Consensus 2 rC~vC~~~k~rk~T~~~C~~C~ 23 (32)
T PF13842_consen 2 RCKVCSKKKRRKDTRYMCSKCD 23 (32)
T ss_pred CCeECCcCCccceeEEEccCCC
Confidence 466666655544 3 3377775
No 51
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=24.25 E-value=43 Score=34.89 Aligned_cols=38 Identities=24% Similarity=0.553 Sum_probs=24.3
Q ss_pred ccccccccccccCCCCCCcCCcccCccccCCCccCccccc
Q psy14167 91 SKSSDVCKKCLTPKPPRTHHCSICDQCILKMDHHCPWMNH 130 (341)
Q Consensus 91 ~~~~~~C~~C~~~kP~Rs~HC~~C~~CVlr~DHHCpwi~n 130 (341)
.++.++|..|...-+ .+.|..|+.=+..=..+|+==|.
T Consensus 12 ~~~akFC~~CG~~l~--~~~Cp~CG~~~~~~~~fC~~CG~ 49 (645)
T PRK14559 12 PNNNRFCQKCGTSLT--HKPCPQCGTEVPVDEAHCPNCGA 49 (645)
T ss_pred CCCCccccccCCCCC--CCcCCCCCCCCCcccccccccCC
Confidence 355678888865433 35677777777777777764443
No 52
>KOG3611|consensus
Probab=24.20 E-value=28 Score=36.78 Aligned_cols=39 Identities=28% Similarity=0.520 Sum_probs=28.5
Q ss_pred CcCCc---ccCccccCCCccCcccc---cccc--cccHHHHHHHHHH
Q psy14167 108 THHCS---ICDQCILKMDHHCPWMN---HCVG--HWNHRYFYMFMIY 146 (341)
Q Consensus 108 s~HC~---~C~~CVlr~DHHCpwi~---nCVG--~~N~r~FilFL~~ 146 (341)
-|+|+ .|..|++..|-||.|-+ .|+- ..|.|.+.+=+-.
T Consensus 491 l~~C~~y~~C~dcclarDPYCAWd~~~~~C~~~~~~~~rs~~Qd~~~ 537 (737)
T KOG3611|consen 491 LARCSRYGSCADCCLARDPYCAWDGVNSKCSLLSPTNRRSVIQDVSS 537 (737)
T ss_pred hhHhhcccchhhhhhccCCCccccCCCCcceECCCCcccchhhhhcc
Confidence 46777 79998888999999998 6865 3355666554433
No 53
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=24.12 E-value=40 Score=22.08 Aligned_cols=21 Identities=29% Similarity=0.698 Sum_probs=11.7
Q ss_pred ccccccccCCCCC------CcCCcccC
Q psy14167 95 DVCKKCLTPKPPR------THHCSICD 115 (341)
Q Consensus 95 ~~C~~C~~~kP~R------s~HC~~C~ 115 (341)
++|+.|+....++ -..|+.|+
T Consensus 1 ~FCp~Cg~~l~~~~~~~~~~~vC~~Cg 27 (52)
T smart00661 1 KFCPKCGNMLIPKEGKEKRRFVCRKCG 27 (52)
T ss_pred CCCCCCCCccccccCCCCCEEECCcCC
Confidence 3677776544333 23466666
No 54
>KOG1841|consensus
Probab=23.61 E-value=41 Score=36.81 Aligned_cols=39 Identities=26% Similarity=0.645 Sum_probs=25.8
Q ss_pred cccccccc--cCCCCCCcCCcccCccccCCCccCcccccccccccHHHHHHHH
Q psy14167 94 SDVCKKCL--TPKPPRTHHCSICDQCILKMDHHCPWMNHCVGHWNHRYFYMFM 144 (341)
Q Consensus 94 ~~~C~~C~--~~kP~Rs~HC~~C~~CVlr~DHHCpwi~nCVG~~N~r~FilFL 144 (341)
..-|-.|+ ..--.|-||||.||+- .-+.|. |.|.++.|+
T Consensus 557 ~pncm~clqkft~ikrrhhcRacgkV---------lcgvcc---nek~~leyl 597 (1287)
T KOG1841|consen 557 APNCMDCLQKFTPIKRRHHCRACGKV---------LCGVCC---NEKSALEYL 597 (1287)
T ss_pred CchHHHHHhhcccccccccchhccce---------eehhhc---chhhhhhhc
Confidence 34566666 5567789999999983 224444 556777665
No 55
>PF01437 PSI: Plexin repeat; InterPro: IPR002165 This is a cysteine rich repeat found in several different extracellular receptors. The function of the repeat is unknown. Three copies of the repeat are found in plexin (P70206 from SWISSPROT) []. Two copies of the repeat are found in mahogany protein. A related Caenorhabditis elegans protein (Q19981 from SWISSPROT) contains four copies of the repeat, while the Met receptor contains a single copy of the repeat.; GO: 0016020 membrane; PDB: 3NVQ_B 3NVN_B 3OL2_B 3OKT_A 3AL8_A 3OKW_A 3OKY_B 3AFC_B 1OLZ_B 1SHY_B ....
Probab=23.58 E-value=16 Score=24.18 Aligned_cols=18 Identities=28% Similarity=0.888 Sum_probs=12.3
Q ss_pred cccCccccCCCccCcccc
Q psy14167 112 SICDQCILKMDHHCPWMN 129 (341)
Q Consensus 112 ~~C~~CVlr~DHHCpwi~ 129 (341)
..|..|+.-.|-+|.|=.
T Consensus 6 ~sC~~Cl~~~dp~CgWc~ 23 (51)
T PF01437_consen 6 TSCSSCLSSRDPYCGWCS 23 (51)
T ss_dssp SSHHHHHHSTCTTEEEET
T ss_pred CcHHHHHcCCCcCccccC
Confidence 566777777777777743
No 56
>PF08600 Rsm1: Rsm1-like; InterPro: IPR013909 This entry contains Nuclear-interacting partner of ALK (NIPA) and NIPA like proteins, as well as mRNA export factor Rsm1, all of which contain a C3HC-type zinc finger. The domain represented in this entry is found C-terminal to the zinc-finger like domain IPR012935 from INTERPRO. Rsm1 is involved in mRNA export from the nucleus []. NIPA is an essential component of an SCF-type E3 ligase complex, SCF(NIPA), a complex that controls mitotic entry by mediating ubiquitination and subsequent degradation of cyclin B1 (CCNB1). Its cell-cycle-dependent phosphorylation regulates the assembly of the SCF(NIPA) complex, restricting CCNB1 ubiquitination activity to interphase. Its inactivation results in nuclear accumulation of CCNB1 in interphase and premature mitotic entry [].
Probab=23.55 E-value=41 Score=25.44 Aligned_cols=10 Identities=40% Similarity=1.195 Sum_probs=7.7
Q ss_pred ccCccccccc
Q psy14167 123 HHCPWMNHCV 132 (341)
Q Consensus 123 HHCpwi~nCV 132 (341)
.||||++.-.
T Consensus 56 ~~CPwv~~~~ 65 (91)
T PF08600_consen 56 EYCPWVNPST 65 (91)
T ss_pred ccCCccCCcc
Confidence 5899998654
No 57
>smart00423 PSI domain found in Plexins, Semaphorins and Integrins.
Probab=22.55 E-value=35 Score=21.95 Aligned_cols=16 Identities=38% Similarity=1.136 Sum_probs=8.5
Q ss_pred ccCccccCCCccCccc
Q psy14167 113 ICDQCILKMDHHCPWM 128 (341)
Q Consensus 113 ~C~~CVlr~DHHCpwi 128 (341)
.|..|+...|-||.|=
T Consensus 6 sC~~C~~~~~~~C~Wc 21 (46)
T smart00423 6 SCSECLLARDPYCAWC 21 (46)
T ss_pred cHHHHHcCCCCCCCcc
Confidence 4555555555555553
No 58
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=22.02 E-value=51 Score=34.38 Aligned_cols=26 Identities=27% Similarity=0.535 Sum_probs=22.8
Q ss_pred ccccccccCCCCCCcCCcccCccccC
Q psy14167 95 DVCKKCLTPKPPRTHHCSICDQCILK 120 (341)
Q Consensus 95 ~~C~~C~~~kP~Rs~HC~~C~~CVlr 120 (341)
+.|..|....|+-+++|..||.=..+
T Consensus 28 ~~Cp~CG~~~~~~~~fC~~CG~~~~~ 53 (645)
T PRK14559 28 KPCPQCGTEVPVDEAHCPNCGAETGT 53 (645)
T ss_pred CcCCCCCCCCCcccccccccCCcccc
Confidence 67999999999999999999986654
No 59
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=21.65 E-value=1.5e+02 Score=29.43 Aligned_cols=12 Identities=25% Similarity=0.786 Sum_probs=8.4
Q ss_pred cCCcccCccccC
Q psy14167 109 HHCSICDQCILK 120 (341)
Q Consensus 109 ~HC~~C~~CVlr 120 (341)
..|..|+.|+..
T Consensus 231 ~~Ci~C~~Cv~v 242 (434)
T TIGR02745 231 GDCIDCNLCVQV 242 (434)
T ss_pred CCCCChhhhHHh
Confidence 457788888763
No 60
>KOG1710|consensus
Probab=21.19 E-value=39 Score=31.41 Aligned_cols=20 Identities=30% Similarity=0.858 Sum_probs=16.3
Q ss_pred cccccccccCCCCCCcCCcccC
Q psy14167 94 SDVCKKCLTPKPPRTHHCSICD 115 (341)
Q Consensus 94 ~~~C~~C~~~kP~Rs~HC~~C~ 115 (341)
..+|++|...+| .+.|+.|+
T Consensus 319 ~~fCstCG~~ga--~KrCs~CK 338 (396)
T KOG1710|consen 319 CQFCSTCGHPGA--KKRCSQCK 338 (396)
T ss_pred cccccccCCCCc--cchhhhhH
Confidence 589999998887 56788776
No 61
>PF00539 Tat: Transactivating regulatory protein (Tat); InterPro: IPR001831 Like other lentiviruses, Human immunodeficiency virus 1 (HIV-1) encodes a trans-activating regulatory protein (Tat), which is essential for efficient transcription of the viral genome [, ]. Tat acts by binding to an RNA stem-loop structure, the trans-activating response element (TAR), found at the 5' ends of nascent HIV-1 transcripts. In binding to TAR, Tat alters the properties of the transcription complex, recruits a positive transcription elongation complex (P-TEFb) and hence increases the production of full-length viral RNA []. Tat protein also associates with RNA polymerase II complexes during early transcription elongation after the promoter clearance and before the synthesis of full-length TAR RNA transcript. This interaction of Tat with RNA polymerase II elongation complexes is P-TEFb-independent. There are two Tat binding sites on each transcription elongation complex; one is located on TAR RNA and the other one on RNA polymerase II near the exit site for nascent mRNA transcripts which suggests that two Tat molecules are involved in performing various functions during a single round of HIV-1 mRNA synthesis []. The minimum Tat sequence that can mediate specific TAR binding in vitro has been mapped to a basic domain of 10 amino acids, comprising mostly Arg and Lys residues. Regulatory activity, however, also requires the 47 N-terminal residues, which interact with components of the transcription complex and function as a transcriptional activation domain [, , ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0042025 host cell nucleus; PDB: 2W2H_D 1ZBN_B 1TVS_A 1TVT_A 3O6L_C 3O6M_C 3MI9_C 3MIA_C 1JFW_A 1TBC_A ....
Probab=20.54 E-value=1.5e+02 Score=21.26 Aligned_cols=7 Identities=43% Similarity=1.393 Sum_probs=4.3
Q ss_pred CcCCccc
Q psy14167 108 THHCSIC 114 (341)
Q Consensus 108 s~HC~~C 114 (341)
+.||..|
T Consensus 36 cyHCqlC 42 (68)
T PF00539_consen 36 CYHCQLC 42 (68)
T ss_dssp TSSSSCC
T ss_pred eeeceee
Confidence 5666654
No 62
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=20.50 E-value=68 Score=17.99 Aligned_cols=19 Identities=37% Similarity=0.983 Sum_probs=11.6
Q ss_pred ccccccCCCCCC----cCCcccC
Q psy14167 97 CKKCLTPKPPRT----HHCSICD 115 (341)
Q Consensus 97 C~~C~~~kP~Rs----~HC~~C~ 115 (341)
|..|+..-.||- ..|..|+
T Consensus 1 C~sC~~~i~~r~~~v~f~CPnCG 23 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPFPCPNCG 23 (24)
T ss_pred CccCCCcccCcccCceEeCCCCC
Confidence 666766666663 4566665
No 63
>PHA03164 hypothetical protein; Provisional
Probab=20.35 E-value=1.1e+02 Score=22.25 Aligned_cols=25 Identities=12% Similarity=0.041 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Q psy14167 230 LVLCVIFCAVLTLSLWHAKLISGGE 254 (341)
Q Consensus 230 ~l~~~~~~~l~~l~~~h~~li~~n~ 254 (341)
+.+.+++..+.+.++.|++.+-+|.
T Consensus 63 LtgLaIamILfiifvlyvFnVnr~~ 87 (88)
T PHA03164 63 LTGLAIAMILFIIFVLYVFNVNRGG 87 (88)
T ss_pred HHHHHHHHHHHHHHHHHheeeccCC
Confidence 3333444444445566666555443
Done!