Query psy14167
Match_columns 341
No_of_seqs 190 out of 1729
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 21:09:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14167.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14167hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 89.7 0.24 8.2E-06 32.8 2.8 42 79-120 4-45 (56)
2 3j21_g 50S ribosomal protein L 79.0 0.7 2.4E-05 30.1 1.2 28 93-120 13-40 (51)
3 1y02_A CARP2, FYVE-ring finger 71.6 1.1 3.7E-05 34.9 0.7 40 77-117 3-44 (120)
4 3t7l_A Zinc finger FYVE domain 71.6 2.8 9.6E-05 30.7 3.0 32 87-118 13-46 (90)
5 1x4u_A Zinc finger, FYVE domai 71.2 2.7 9.4E-05 30.2 2.8 28 90-117 10-39 (84)
6 1z2q_A LM5-1; membrane protein 71.0 3.7 0.00013 29.5 3.5 31 88-118 15-47 (84)
7 1joc_A EEA1, early endosomal a 64.7 2.8 9.6E-05 32.7 1.8 29 90-118 65-95 (125)
8 2yw8_A RUN and FYVE domain-con 61.3 3.7 0.00013 29.4 1.8 27 92-118 17-45 (82)
9 1vfy_A Phosphatidylinositol-3- 58.1 3.5 0.00012 28.8 1.2 24 95-118 12-37 (73)
10 1wfk_A Zinc finger, FYVE domai 56.2 4.6 0.00016 29.4 1.6 26 92-117 7-34 (88)
11 1dvp_A HRS, hepatocyte growth 52.0 5.3 0.00018 34.2 1.6 25 94-118 161-187 (220)
12 1wfl_A Zinc finger protein 216 51.4 14 0.00047 25.9 3.3 39 93-132 24-67 (74)
13 2cr8_A MDM4 protein; ZF-ranbp 48.4 6 0.0002 25.5 1.0 24 93-116 10-33 (53)
14 2knc_B Integrin beta-3; transm 47.6 47 0.0016 23.5 5.7 31 225-255 12-42 (79)
15 2c6a_A Ubiquitin-protein ligas 44.4 7.7 0.00026 24.4 1.0 23 94-116 13-35 (46)
16 3zyq_A Hepatocyte growth facto 34.2 10 0.00035 32.6 0.6 25 94-118 164-190 (226)
17 3u5e_m 60S ribosomal protein L 33.8 14 0.00046 28.6 1.1 24 94-117 93-118 (128)
18 3mpx_A FYVE, rhogef and PH dom 33.0 9.1 0.00031 36.0 0.0 26 92-117 373-400 (434)
19 1wg2_A Zinc finger (AN1-like) 32.0 43 0.0015 22.7 3.2 40 93-133 14-58 (64)
20 2dkt_A Ring finger and CHY zin 30.3 13 0.00045 29.6 0.5 41 93-133 82-126 (143)
21 2dkt_A Ring finger and CHY zin 28.2 12 0.00042 29.7 -0.0 32 95-126 102-136 (143)
22 2vrw_B P95VAV, VAV1, proto-onc 24.2 24 0.00081 32.8 1.2 29 91-119 354-385 (406)
23 1tac_A TAT protein; transcript 23.2 79 0.0027 22.5 3.4 19 94-114 19-37 (86)
24 2xzm_5 Ribosomal protein S26E 22.4 22 0.00076 27.1 0.5 21 108-128 20-40 (119)
25 1h7d_A Aminolevulinic acid syn 22.1 32 0.0011 22.0 1.1 15 119-133 5-19 (49)
26 3u5c_a 40S ribosomal protein S 21.5 23 0.00078 27.1 0.4 20 108-127 20-39 (119)
27 1weu_A Inhibitor of growth fam 21.4 1.3E+02 0.0044 21.7 4.5 14 89-103 31-44 (91)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=89.69 E-value=0.24 Score=32.82 Aligned_cols=42 Identities=26% Similarity=0.475 Sum_probs=31.4
Q ss_pred cCCCCCCCCCCcccccccccccccCCCCCCcCCcccCccccC
Q psy14167 79 TSPGHPPKHSVSSKSSDVCKKCLTPKPPRTHHCSICDQCILK 120 (341)
Q Consensus 79 tdPG~~p~~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CVlr 120 (341)
++|...+...........|..|...-|+||.-|+.|+.--+|
T Consensus 4 ~e~~~~~lA~k~~~~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 4 TDPAKLQIVQQRVFLKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CCSCCSSTTTTCSCCCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred cchhHHHHHHHHHhchhhhccccCcCCcccccccCCCCCCCC
Confidence 356555544445556789999999999999999998865443
No 2
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=79.01 E-value=0.7 Score=30.14 Aligned_cols=28 Identities=25% Similarity=0.542 Sum_probs=23.7
Q ss_pred ccccccccccCCCCCCcCCcccCccccC
Q psy14167 93 SSDVCKKCLTPKPPRTHHCSICDQCILK 120 (341)
Q Consensus 93 ~~~~C~~C~~~kP~Rs~HC~~C~~CVlr 120 (341)
..+.|..|....|++++.|+.|+.--+|
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred CCccCCCCCCcCCCCceecCCCCCcccc
Confidence 4678999999999999999999875443
No 3
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=71.59 E-value=1.1 Score=34.89 Aligned_cols=40 Identities=23% Similarity=0.443 Sum_probs=17.6
Q ss_pred hccCCCCCCCCCCccccccccccccc--CCCCCCcCCcccCcc
Q psy14167 77 FSTSPGHPPKHSVSSKSSDVCKKCLT--PKPPRTHHCSICDQC 117 (341)
Q Consensus 77 ~~tdPG~~p~~~~~~~~~~~C~~C~~--~kP~Rs~HC~~C~~C 117 (341)
..+||++-+... +......|..|+. .-..|-|||+.||+-
T Consensus 3 ~~~~~~~~~~~~-Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~i 44 (120)
T 1y02_A 3 AYSNPGYSSFPS-PTGLEPSCKSCGAHFANTARKQTCLDCKKN 44 (120)
T ss_dssp ------------------CCCTTTCCCCSSGGGCEECTTTCCE
T ss_pred ccCCCCcccCCc-CccccCcccCcCCccccccccccCCCCCCe
Confidence 346777653322 2234467888875 235688999999884
No 4
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=71.56 E-value=2.8 Score=30.66 Aligned_cols=32 Identities=25% Similarity=0.598 Sum_probs=21.4
Q ss_pred CCCccccccccccccc--CCCCCCcCCcccCccc
Q psy14167 87 HSVSSKSSDVCKKCLT--PKPPRTHHCSICDQCI 118 (341)
Q Consensus 87 ~~~~~~~~~~C~~C~~--~kP~Rs~HC~~C~~CV 118 (341)
.+.+......|..|+. .--.|-|||+.||+-+
T Consensus 13 ~W~~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 13 TWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred cCcccccCCcCcCCCCcccchhhCccccCCCCEE
Confidence 3344455677888874 2345789999998743
No 5
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.25 E-value=2.7 Score=30.22 Aligned_cols=28 Identities=18% Similarity=0.488 Sum_probs=20.4
Q ss_pred cccccccccccccC--CCCCCcCCcccCcc
Q psy14167 90 SSKSSDVCKKCLTP--KPPRTHHCSICDQC 117 (341)
Q Consensus 90 ~~~~~~~C~~C~~~--kP~Rs~HC~~C~~C 117 (341)
+......|..|+.. --.|-|||+.||+-
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcE
Confidence 34556788888752 45688999999874
No 6
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=70.98 E-value=3.7 Score=29.54 Aligned_cols=31 Identities=23% Similarity=0.540 Sum_probs=21.3
Q ss_pred CCcccccccccccccC--CCCCCcCCcccCccc
Q psy14167 88 SVSSKSSDVCKKCLTP--KPPRTHHCSICDQCI 118 (341)
Q Consensus 88 ~~~~~~~~~C~~C~~~--kP~Rs~HC~~C~~CV 118 (341)
+.+......|..|+.. .-.|-|||+.|++-+
T Consensus 15 W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 15 WQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp CCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred cccCCCCCCCcCcCCccccchhcccccCCCcEE
Confidence 3334556788888752 346889999998743
No 7
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=64.67 E-value=2.8 Score=32.72 Aligned_cols=29 Identities=24% Similarity=0.568 Sum_probs=20.6
Q ss_pred cccccccccccccC--CCCCCcCCcccCccc
Q psy14167 90 SSKSSDVCKKCLTP--KPPRTHHCSICDQCI 118 (341)
Q Consensus 90 ~~~~~~~C~~C~~~--kP~Rs~HC~~C~~CV 118 (341)
+......|..|+.. --.|-|||+.||+-+
T Consensus 65 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 65 EDNEVQNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred cCCCCCCCcCcCCccccccccccCCCCCeEE
Confidence 33456788888753 346889999998743
No 8
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=61.28 E-value=3.7 Score=29.38 Aligned_cols=27 Identities=26% Similarity=0.742 Sum_probs=19.2
Q ss_pred ccccccccccc--CCCCCCcCCcccCccc
Q psy14167 92 KSSDVCKKCLT--PKPPRTHHCSICDQCI 118 (341)
Q Consensus 92 ~~~~~C~~C~~--~kP~Rs~HC~~C~~CV 118 (341)
.....|..|+. .--.|-|||+.||+-+
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEE
Confidence 44567888874 2346889999998743
No 9
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=58.13 E-value=3.5 Score=28.77 Aligned_cols=24 Identities=33% Similarity=0.754 Sum_probs=17.3
Q ss_pred ccccccccC--CCCCCcCCcccCccc
Q psy14167 95 DVCKKCLTP--KPPRTHHCSICDQCI 118 (341)
Q Consensus 95 ~~C~~C~~~--kP~Rs~HC~~C~~CV 118 (341)
..|..|+.. .-.|-|||+.||+-+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEE
Confidence 468888752 346889999998743
No 10
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=56.23 E-value=4.6 Score=29.39 Aligned_cols=26 Identities=15% Similarity=0.374 Sum_probs=18.7
Q ss_pred cccccccccccC--CCCCCcCCcccCcc
Q psy14167 92 KSSDVCKKCLTP--KPPRTHHCSICDQC 117 (341)
Q Consensus 92 ~~~~~C~~C~~~--kP~Rs~HC~~C~~C 117 (341)
+....|..|+.. .-.|-|||+.||+-
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~v 34 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCE
Confidence 345678888752 34688999999874
No 11
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=52.02 E-value=5.3 Score=34.21 Aligned_cols=25 Identities=36% Similarity=0.848 Sum_probs=17.7
Q ss_pred cccccccccC--CCCCCcCCcccCccc
Q psy14167 94 SDVCKKCLTP--KPPRTHHCSICDQCI 118 (341)
Q Consensus 94 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 118 (341)
...|..|+.. --.|-|||+.||+-+
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEE
Confidence 3678888742 345889999988743
No 12
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=51.36 E-value=14 Score=25.89 Aligned_cols=39 Identities=18% Similarity=0.446 Sum_probs=24.1
Q ss_pred ccccccccccCCCCCCcCCcccCc-----cccCCCccCccccccc
Q psy14167 93 SSDVCKKCLTPKPPRTHHCSICDQ-----CILKMDHHCPWMNHCV 132 (341)
Q Consensus 93 ~~~~C~~C~~~kP~Rs~HC~~C~~-----CVlr~DHHCpwi~nCV 132 (341)
....|..|+...-.-...|+ |+. -..-=||.|++--.=.
T Consensus 24 ~~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk~~ 67 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYKAE 67 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGGGT
T ss_pred cCCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchhhhh
Confidence 34679999865433347777 654 3333489998754433
No 13
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=48.44 E-value=6 Score=25.49 Aligned_cols=24 Identities=21% Similarity=0.446 Sum_probs=18.6
Q ss_pred ccccccccccCCCCCCcCCcccCc
Q psy14167 93 SSDVCKKCLTPKPPRTHHCSICDQ 116 (341)
Q Consensus 93 ~~~~C~~C~~~kP~Rs~HC~~C~~ 116 (341)
..=.|..|+..-||--.||..|-.
T Consensus 10 D~WkC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 10 DEWQCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp CCEECSSSCCEECSSCCBCTTTCC
T ss_pred ceeecccccccCCCccchhHHHHH
Confidence 344699999888988888887754
No 14
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=47.61 E-value=47 Score=23.45 Aligned_cols=31 Identities=13% Similarity=0.382 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q psy14167 225 LMFLSLVLCVIFCAVLTLSLWHAKLISGGET 255 (341)
Q Consensus 225 ~i~l~~l~~~~~~~l~~l~~~h~~li~~n~T 255 (341)
.+++.++..++++.+..|++|-+..-....-
T Consensus 12 ~Iv~gvi~gilliGllllliwk~~~~i~Drr 42 (79)
T 2knc_B 12 VVLLSVMGAILLIGLAALLIWKLLITIHDRK 42 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555566666666654443333
No 15
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=44.42 E-value=7.7 Score=24.45 Aligned_cols=23 Identities=30% Similarity=0.648 Sum_probs=18.1
Q ss_pred cccccccccCCCCCCcCCcccCc
Q psy14167 94 SDVCKKCLTPKPPRTHHCSICDQ 116 (341)
Q Consensus 94 ~~~C~~C~~~kP~Rs~HC~~C~~ 116 (341)
.=.|..|+..-||--.||..|-.
T Consensus 13 ~WkC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 13 YWKCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp CEECTTTCCEECSSCSSCTTTCC
T ss_pred eEecccccccCCCccchhhHHHh
Confidence 34599999988998888887754
No 16
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.18 E-value=10 Score=32.56 Aligned_cols=25 Identities=32% Similarity=0.825 Sum_probs=18.1
Q ss_pred ccccccccc--CCCCCCcCCcccCccc
Q psy14167 94 SDVCKKCLT--PKPPRTHHCSICDQCI 118 (341)
Q Consensus 94 ~~~C~~C~~--~kP~Rs~HC~~C~~CV 118 (341)
...|..|+. .---|-|||+.||+.+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEe
Confidence 367998974 2345789999998853
No 17
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=33.83 E-value=14 Score=28.61 Aligned_cols=24 Identities=38% Similarity=1.018 Sum_probs=21.1
Q ss_pred cccccccccCCCCCCcCCcc--cCcc
Q psy14167 94 SDVCKKCLTPKPPRTHHCSI--CDQC 117 (341)
Q Consensus 94 ~~~C~~C~~~kP~Rs~HC~~--C~~C 117 (341)
...|..|...-|+|+..|+. |+..
T Consensus 93 ~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 93 KSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp CEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred eEeeccccccCCchhhccchhhCCCc
Confidence 58899999999999999994 8764
No 18
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=32.99 E-value=9.1 Score=36.01 Aligned_cols=26 Identities=27% Similarity=0.643 Sum_probs=0.0
Q ss_pred ccccccccccc--CCCCCCcCCcccCcc
Q psy14167 92 KSSDVCKKCLT--PKPPRTHHCSICDQC 117 (341)
Q Consensus 92 ~~~~~C~~C~~--~kP~Rs~HC~~C~~C 117 (341)
.....|..|+. ..-.|-|||+.||+.
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~ 400 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKI 400 (434)
T ss_dssp ----------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCE
Confidence 34567888874 223478999999874
No 19
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=31.95 E-value=43 Score=22.68 Aligned_cols=40 Identities=20% Similarity=0.411 Sum_probs=24.7
Q ss_pred ccccccccccCCCCCCcCCcccC-----ccccCCCccCcccccccc
Q psy14167 93 SSDVCKKCLTPKPPRTHHCSICD-----QCILKMDHHCPWMNHCVG 133 (341)
Q Consensus 93 ~~~~C~~C~~~kP~Rs~HC~~C~-----~CVlr~DHHCpwi~nCVG 133 (341)
....|..|+...-.=...| .|+ +-..--||.|++--.=.|
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC~~HR~~e~H~C~fDyk~~g 58 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKC-KCGSTFCGSHRYPEKHECSFDFKEVG 58 (64)
T ss_dssp CSCSCTTTCCCCTTSCEEC-TTSCEECSSSCSSTTTTCCCCCSCSC
T ss_pred cCCcChhhCCcccccCeEe-ecCCEecccCCCccccCCCcchhHHh
Confidence 4578999987543335667 354 344445999987654444
No 20
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=30.27 E-value=13 Score=29.59 Aligned_cols=41 Identities=27% Similarity=0.601 Sum_probs=26.6
Q ss_pred ccccccccccCCCCC-CcCCcccCccccCC--C-ccCcccccccc
Q psy14167 93 SSDVCKKCLTPKPPR-THHCSICDQCILKM--D-HHCPWMNHCVG 133 (341)
Q Consensus 93 ~~~~C~~C~~~kP~R-s~HC~~C~~CVlr~--D-HHCpwi~nCVG 133 (341)
+..||..|+.+.+.+ ..||..||.|...- | -||-=-|.|+.
T Consensus 82 ~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 82 GEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp CSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred eeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 356788888775443 57788888887752 2 26666666644
No 21
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=28.17 E-value=12 Score=29.74 Aligned_cols=32 Identities=25% Similarity=0.683 Sum_probs=23.1
Q ss_pred ccccccccCCCCCCcCCcccCccccC--C-CccCc
Q psy14167 95 DVCKKCLTPKPPRTHHCSICDQCILK--M-DHHCP 126 (341)
Q Consensus 95 ~~C~~C~~~kP~Rs~HC~~C~~CVlr--~-DHHCp 126 (341)
..|..|+.-+..--.||..||.|+.. . +|.|.
T Consensus 102 ~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~ 136 (143)
T 2dkt_A 102 ESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI 136 (143)
T ss_dssp TTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCS
T ss_pred CCCCceeccCCcCcEECCcCCeeeccccCcCcccC
Confidence 45666666767778999999999643 3 47775
No 22
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=24.22 E-value=24 Score=32.81 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=20.8
Q ss_pred ccccccccccccCC---CCCCcCCcccCcccc
Q psy14167 91 SKSSDVCKKCLTPK---PPRTHHCSICDQCIL 119 (341)
Q Consensus 91 ~~~~~~C~~C~~~k---P~Rs~HC~~C~~CVl 119 (341)
.....+|..|+..- -.|-|||+.|+..|-
T Consensus 354 ~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h 385 (406)
T 2vrw_B 354 FEETTSCKACQMLLRGTFYQGYRCYRCRAPAH 385 (406)
T ss_dssp CSSCCBCTTTCCBCCSSSSCEEEETTTCCEEC
T ss_pred CCCCCCCccccchhceeCCCCCCCCCCcCccc
Confidence 34568999998643 468899998876443
No 23
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=23.16 E-value=79 Score=22.55 Aligned_cols=19 Identities=11% Similarity=0.252 Sum_probs=8.9
Q ss_pred cccccccccCCCCCCcCCccc
Q psy14167 94 SDVCKKCLTPKPPRTHHCSIC 114 (341)
Q Consensus 94 ~~~C~~C~~~kP~Rs~HC~~C 114 (341)
..-|.+|-..|- +.||.+|
T Consensus 19 ~T~C~~CyCKkC--c~HCq~C 37 (86)
T 1tac_A 19 KTASNRAHAKKS--AYHSQVA 37 (86)
T ss_dssp TTCSSCSSTTTT--TTTCCCS
T ss_pred CCCCCCceecch--hhhhhHH
Confidence 344555543221 5666654
No 24
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Probab=22.43 E-value=22 Score=27.14 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=16.0
Q ss_pred CcCCcccCccccCCCccCccc
Q psy14167 108 THHCSICDQCILKMDHHCPWM 128 (341)
Q Consensus 108 s~HC~~C~~CVlr~DHHCpwi 128 (341)
.-||..|++||.|----+.++
T Consensus 20 ~V~C~nCgr~vPKDKAIKrf~ 40 (119)
T 2xzm_5 20 TVPCTNCGRQVAKDKAVKRYT 40 (119)
T ss_dssp EEECTTTCCEEETTTSEECCE
T ss_pred cEeeCCccccCcccceeEEEE
Confidence 457999999999866666544
No 25
>1h7d_A Aminolevulinic acid synthase 2, erythroid; acyltransferase, ALAS, presequence, structure; NMR {Mus musculus} SCOP: j.88.1.1 PDB: 1h7j_A
Probab=22.05 E-value=32 Score=22.00 Aligned_cols=15 Identities=13% Similarity=0.293 Sum_probs=11.4
Q ss_pred cCCCccCcccccccc
Q psy14167 119 LKMDHHCPWMNHCVG 133 (341)
Q Consensus 119 lr~DHHCpwi~nCVG 133 (341)
..++|+||+++.+=.
T Consensus 5 a~~l~~CPFL~R~p~ 19 (49)
T 1h7d_A 5 AMLLRSCPVLSQGPT 19 (49)
T ss_dssp SCSCCSCCCCSSCSC
T ss_pred hhhhccCCchhcCCH
Confidence 457899999987643
No 26
>3u5c_a 40S ribosomal protein S26-A, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_a
Probab=21.52 E-value=23 Score=27.11 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=14.6
Q ss_pred CcCCcccCccccCCCccCcc
Q psy14167 108 THHCSICDQCILKMDHHCPW 127 (341)
Q Consensus 108 s~HC~~C~~CVlr~DHHCpw 127 (341)
.-||..|++||.|----+.+
T Consensus 20 ~V~C~nCgr~vPKDKAIKrf 39 (119)
T 3u5c_a 20 PVRCVNCSKSIPKDKAIKRM 39 (119)
T ss_dssp EEECTTTCCEEEGGGSCEEE
T ss_pred cEeeccccccccccceeeEE
Confidence 35799999999985555443
No 27
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=21.44 E-value=1.3e+02 Score=21.73 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=8.7
Q ss_pred CcccccccccccccC
Q psy14167 89 VSSKSSDVCKKCLTP 103 (341)
Q Consensus 89 ~~~~~~~~C~~C~~~ 103 (341)
.+.+...|| .|+..
T Consensus 31 ~d~~e~~yC-iC~~~ 44 (91)
T 1weu_A 31 VDPNEPTYC-LCHQV 44 (91)
T ss_dssp CCSCCCBCS-TTCCB
T ss_pred cCCCCCcEE-ECCCC
Confidence 334566788 78753
Done!