RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14167
(341 letters)
>gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase. This family
includes the well known DHHC zinc binding domain as well
as three of the four conserved transmembrane regions
found in this family of palmitoyltransferase enzymes.
Length = 167
Score = 104 bits (262), Expect = 3e-27
Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 17/131 (12%)
Query: 70 VFNYYMGFSTSPGHPPK----------------HSVSSKSSDVCKKCLTPKPPRTHHCSI 113
+++Y+ T PG+ PK C C KPPR+HHC +
Sbjct: 1 LWSYFKTIFTDPGYVPKNPTEKEQEKQPDEESEEGDEEDELKFCSTCNIIKPPRSHHCRV 60
Query: 114 CDQCILKMDHHCPWMNHCVGHWNHRYFYMFMIYTLLGCAFLFIIGYRPAYSILVANSKHF 173
C++C+L+ DHHCPW+N+C+G NH+YF +F++Y L L ++ + L+ N + F
Sbjct: 61 CNRCVLRFDHHCPWLNNCIGRRNHKYFLLFLLYLTLYLILLLVLSFY-YLVYLIRNIELF 119
Query: 174 DFHYENVHDVL 184
F ++ +
Sbjct: 120 FFLILSLFSSI 130
>gnl|CDD|227598 COG5273, COG5273, Uncharacterized protein containing DHHC-type Zn
finger [General function prediction only].
Length = 309
Score = 94.8 bits (236), Expect = 2e-22
Identities = 52/174 (29%), Positives = 78/174 (44%), Gaps = 33/174 (18%)
Query: 15 SVLISIGPFLTVLVI-FISGFTVFIAYWILFPFYRRQSEWLAYTLAVIGNWILINFVFNY 73
S L S F+ LV +G + + LF S + YTL VI + + +F
Sbjct: 5 SWLPSTLGFIVFLVRLLRTGLYAYKMFIGLF----LLSRIVVYTLLVIVKSLSLVVLFII 60
Query: 74 YMGF-------------STSPGHPPKHSVSSKSSDV---------------CKKCLTPKP 105
+ PG+ ++ S + C C KP
Sbjct: 61 LFIVILVLASFSYLLLLVSDPGYLGENITLSGYRETISRLLDDGKFGTENFCSTCNIYKP 120
Query: 106 PRTHHCSICDQCILKMDHHCPWMNHCVGHWNHRYFYMFMIYTLLGCAFLFIIGY 159
PR+HHCSIC++C+LK DHHCPW+N+CVG N+R+FY F++YT+L + +
Sbjct: 121 PRSHHCSICNRCVLKFDHHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTA 174
>gnl|CDD|213586 TIGR01104, V_PPase, vacuolar-type H(+)-translocating
pyrophosphatase. This model describes proton
pyrophosphatases from eukaryotes (predominantly plants),
archaea and bacteria. It is an integral membrane protein
and is suggested to have about 15 membrane spanning
domains. Proton translocating inorganic pyrophosphatase,
like H(+)-ATPase, acidifies the vacuoles and is pivotal
to the vacuolar secondary active transport systems in
plants [Transport and binding proteins, Cations and iron
carrying compounds].
Length = 695
Score = 35.5 bits (82), Expect = 0.036
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 12 VVDSVLISIGPFLTVLVIFISGFTVFIAYWILFPFYRRQSEWLAYTLAVIGNWI--LINF 69
++ +VL+++G + V +GFT+F F + W + +G W LI F
Sbjct: 300 IISTVLMTVGVAVISWVALPTGFTIF-----NFGTQKLVKSWQLFLCVAVGLWAGLLIGF 354
Query: 70 VFNYYMGFSTSP 81
V YY + SP
Sbjct: 355 VTEYYTSNAYSP 366
>gnl|CDD|233205 TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Transporter.
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 260
Score = 31.9 bits (73), Expect = 0.40
Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 15 SVLISIGPFLTVLVIFISGFTVFIAYWILFPFYRRQSEWLAYTLAVIGNWILIN 68
+V L+++++ V + ++ R+ LA L + G +L++
Sbjct: 67 AVKRLPVGE-AALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119
>gnl|CDD|217327 pfam03030, H_PPase, Inorganic H+ pyrophosphatase. The H+
pyrophosphatase is an transmembrane proton pump involved
in establishing the H+ electrochemical potential
difference between the vacuole lumen and the cell
cytosol. Vacuolar-type H(+)-translocating inorganic
pyrophosphatases have long been considered to be
restricted to plants and to a few species of
photo-trophic bacteria. However, in recent
investigations, these pyrophosphatases have been found
in organisms as disparate as thermophilic Archaea and
parasitic protists.
Length = 669
Score = 31.7 bits (73), Expect = 0.58
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 25 TVLVIFISGFTVFIAYWILFPFYRRQSEWLAYTLAVIGNW--ILINFVFNYYMGFSTSPG 82
+L I T F YW+L + W + +IG LI + YY TS
Sbjct: 291 AILSIVA---TYFATYWLLPAAGKGFLWWNLFLAVLIGLVAGALIGLITEYY----TSTS 343
Query: 83 HPPKHSVSSKS 93
+ P ++ S
Sbjct: 344 YRPVREIAEAS 354
>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope
biogenesis, outer membrane].
Length = 518
Score = 31.6 bits (72), Expect = 0.61
Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 9/90 (10%)
Query: 9 IFWVVDSVLISIG------PFLTVLVIFISGFTVFIAYWILFPFYRRQSEWLAYTLAV-- 60
+W+ S+ + +G P L +L+ + + + + + +A
Sbjct: 78 FYWLGTSLGVGLGLLAVALPLLVLLLAAWLALFLLLVAVLTCRLWFALLVVPSAWVAAEW 137
Query: 61 IGNWILINFVFNYYMGFSTSPGHPPKHSVS 90
+ W L F + +G+S P S
Sbjct: 138 LRGWSLTGFPWL-LLGYSQWSPSPLLQLAS 166
>gnl|CDD|220672 pfam10277, Frag1, Frag1/DRAM/Sfk1 family. This family includes
Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor
activating protein 1) is a protein that is conserved
from fungi to humans. There are four potential
iso-prenylation sites throughout the peptide, viz CILW,
CIIW and CIGL. Frag1 is a membrane-spanning protein that
is ubiquitously expressed in adult tissues suggesting an
important cellular function. Dram is a family of
proteins conserved from nematodes to humans with six
hydrophobic transmembrane regions and an Endoplasmic
Reticulum signal peptide. It is a lysosomal protein that
induces macro-autophagy as an effector of p53-mediated
death, where p53 is the tumour-suppressor gene that is
frequently mutated in cancer. Expression of Dram is
stress-induced. This region is also part of a family of
small plasma membrane proteins, referred to as Sfk1,
that may act together with or upstream of Stt4p to
generate normal levels of the essential phospholipid
PI4P, thus allowing proper localisation of Stt4p to the
actin cytoskeleton.
Length = 216
Score = 30.7 bits (70), Expect = 0.91
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 27 LVIFISGFTVFIAYWILFPFYRRQSEWLAYTLAVIGNWILINFVFNYYMGFS 78
L++ I F I + + F + AY+L+ I WIL ++ F+
Sbjct: 159 LILSIIAFISAIPFGVFFIQHNVHCGPGAYSLSAIFEWILAFSFILFFGTFA 210
>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC. This enzyme,
which is found in biotin biosynthetic gene clusters in
proteobacteria, firmicutes, green-sulfur bacteria,
fusobacterium and bacteroides, is believed to carry out
an enzymatic step prior to the formation of pimeloyl-CoA
(although attribution of this annotation is not
traceable). The enzyme appears related to
methyltransferases by homology [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 240
Score = 30.3 bits (69), Expect = 1.1
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 12/62 (19%)
Query: 164 SILVANSKHFDFHYENVHDVLAAI--------PEGKLGRRDT----MFFRSSFQPMKIPL 211
+L + +++ DVL + G+ R+ + FQP +PL
Sbjct: 170 ELLTLEEELITLSFDDPLDVLRHLKKTGANGLSSGRTSRKQLKAFLERYEQEFQPDGLPL 229
Query: 212 SY 213
+Y
Sbjct: 230 TY 231
>gnl|CDD|227053 COG4709, COG4709, Predicted membrane protein [Function unknown].
Length = 195
Score = 29.7 bits (67), Expect = 1.7
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 15 SVLISIGPF----LTVLVIFISGFTVFIAYWILF 44
+V+I + L V+ I ++ T+ + W L
Sbjct: 92 AVIIGLPLLIGVILFVIAILVAALTLIFSGWALV 125
>gnl|CDD|234919 PRK01209, cobD, cobalamin biosynthesis protein; Provisional.
Length = 312
Score = 29.8 bits (68), Expect = 2.2
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Query: 4 AFVEPIFWVVDSVLISIGPFLTVLVIFISGFTVFIAYWILFPFYRRQSEWLAYTLAVIGN 63
+ +E L G ++V+ S +A+ +L R WL L V+
Sbjct: 36 SRLERRLRRGCRGLRIAGVLAWLVVVGPS---GLLAWLLLALAARL---WLGVALEVLLL 89
Query: 64 WILI 67
+ +
Sbjct: 90 YTAL 93
>gnl|CDD|238535 cd01115, SLC13_permease, Permease SLC13 (solute carrier 13). The
sodium/dicarboxylate cotransporter NaDC-1 has been
shown to translocate Krebs cycle intermediates such as
succinate, citrate, and alpha-ketoglutarate across
plasma membranes rabbit, human, and rat kidney. It is
related to renal and intestinal Na+/sulfate
cotransporters and a few putative bacterial permeases.
The SLC13-type proteins belong to the ArsB/NhaD
superfamily of permeases that translocate sodium and
various anions across biological membranes in all three
kingdoms of life. A typical ArsB/NhaD permease is
composed of 8-13 transmembrane helices.
Length = 382
Score = 29.5 bits (67), Expect = 2.6
Identities = 8/49 (16%), Positives = 19/49 (38%)
Query: 14 DSVLISIGPFLTVLVIFISGFTVFIAYWILFPFYRRQSEWLAYTLAVIG 62
+V++ + F+ + +G IA +L + + L + V
Sbjct: 47 PAVILFLAGFILGAALTRTGLAKRIATKLLKRAGKGERRLLLLLMLVTA 95
>gnl|CDD|217850 pfam04024, PspC, PspC domain. This family includes Phage shock
protein C (PspC) that is thought to be a
transcriptional regulator. The presumed domain is 60
amino acid residues in length.
Length = 62
Score = 27.1 bits (61), Expect = 2.8
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 13 VDSVLISIGPFLTVLVIFISGFTVFIAYWIL 43
+D L+ + L VL+ G +AY IL
Sbjct: 26 IDVTLVRL---LFVLLTLFGGGFGLLAYIIL 53
>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 713
Score = 29.5 bits (67), Expect = 2.8
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 20 IGPFLTVLVIFISGFTVFIAYWILFPFYRRQSEWLAYTLAVIGNWILINFVFNYYMGFST 79
+ L V+F G+ + W R + LA IG + + + + F
Sbjct: 118 VSFLLATPVLFYGGWPFYRGAWRAL-RRGRLNMDTLVALATIGAYAYSLYATLFPVYFEE 176
Query: 80 S 80
+
Sbjct: 177 A 177
>gnl|CDD|148147 pfam06369, Anemone_cytotox, Sea anemone cytotoxic protein. Sea
anemones are a rich source of cytotoxic proteins.
Cytolysins comprise a group of more than 30 highly basic
proteins with molecular masses of about 20 kDa.
Cytolysins isolated from the sea anemone, Heteractis
magnifica, include magnificalysin I (HMg I),
magnificalysin II (HMg II) and Heteractis magnifica
toxin (HMgtxn). These are highly homologous at their
N-terminals. HMg I and II have molecular masses of
approximately 19 kDa, and pI values of 9.4 and 10.0,
respectively. Cytolysins isolated from other sea
anemones Actinia tenebrosa (Tenebrosin-C, TN-C), Actinia
equina (Equinatoxin, EqT) and Stichodactyla helianthus
(ShC) exhibit pore-forming, haemolytic, cytotoxic, and
heart stimulatory activities.
Length = 176
Score = 28.7 bits (64), Expect = 3.4
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 264 YEMTKKKKEGGTFKNPFDFGWKTNW---RIFLG 293
Y+M+ F PFD+ W +NW +I+ G
Sbjct: 90 YKMSSGNTLAVMFSVPFDYNWYSNWWNVKIYDG 122
>gnl|CDD|218916 pfam06157, DUF973, Protein of unknown function (DUF973). This
family consists of several hypothetical archaeal
proteins of unknown function.
Length = 283
Score = 28.5 bits (64), Expect = 4.8
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 17/82 (20%)
Query: 9 IFWVVDSVLISIGPFLTVL----------VIFISGFTVFIAYWILFPFYRRQSE------ 52
I +V V+I IG LT++ ++FI G I Y ++ R E
Sbjct: 88 ILIIVGYVIIIIGALLTIVGLLSLVGGVIILFIGGILGLIGYILIGLGIYRIGEIYNENL 147
Query: 53 -WLAYTLAVIGNWILINFVFNY 73
+ L +I I F+ Y
Sbjct: 148 VKIGGILIIIPIISFIGFILTY 169
>gnl|CDD|233194 TIGR00930, 2a30, K-Cl cotransporter. [Transport and binding
proteins, Other].
Length = 953
Score = 28.9 bits (65), Expect = 5.4
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 197 TMFFRSSFQPMKIPLSYYLETY--------QFRYKSLMFLSLVLCVIFCAVLTLSLWHAK 248
+ FF +S+ I S + + +F+Y +LSL+ + CA++ L W A
Sbjct: 466 SNFFLASY--ALINFSCFHASLLRSPGWRPRFKYYH-WWLSLLGASLCCAIMFLISWWAA 522
Query: 249 LISGGETSVEFLKNKYEMTKKKKEG 273
L++ + KY +T KK +
Sbjct: 523 LVAMV---IALFLYKY-VTYKKPDV 543
>gnl|CDD|227100 COG4758, COG4758, Predicted membrane protein [Function unknown].
Length = 235
Score = 28.1 bits (63), Expect = 5.4
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 23 FLTVLVIFISGFTVFIAYWILFP----FYRRQSEWLAYTLAVIGNWILINFVF 71
FL +++I I T+F + F + A L +I ++ VF
Sbjct: 14 FLALMIIQIVIETLFFWPLVFLLALLLFRIYTTRSRASVLKIIALFLFFAIVF 66
>gnl|CDD|216504 pfam01437, PSI, Plexin repeat. A cysteine rich repeat found in
several different extracellular receptors. The function
of the repeat is unknown. Three copies of the repeat are
found Plexin. Two copies of the repeat are found in
mahogany protein. A related C. elegans protein contains
four copies of the repeat. The Met receptor contains a
single copy of the repeat. The Pfam alignment shows 6
conserved cysteine residues that may form three
conserved disulphide bridges, whereas shows 8 conserved
cysteines. The pattern of conservation suggests that
cysteines 5 and 7 (that are not absolutely conserved)
form a disulphide bridge (Personal observation. A
Bateman).
Length = 48
Score = 26.0 bits (57), Expect = 5.5
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 4/27 (14%)
Query: 109 HHCSICDQCILKMDHHCPW---MNHCV 132
+ S C C+ D +C W C
Sbjct: 4 QYTS-CSSCLAARDPYCGWCSSEGRCT 29
>gnl|CDD|233185 TIGR00918, 2A060602, The Eukaryotic (Putative) Sterol Transporter
(EST) Family.
Length = 1145
Score = 28.7 bits (64), Expect = 6.0
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 206 PMKIPLSYYLETYQFRYKSLMFLSLVLCVIF--CAVLTLSLWHAKLI 250
P P ++ + R+ L+ +S+VL F CA+L L+ W A LI
Sbjct: 949 PSGYPFLFWEQYMGLRHWLLLSISVVLACTFLVCALLLLNPWTAGLI 995
>gnl|CDD|223970 COG1040, ComFC, Predicted amidophosphoribosyltransferases [General
function prediction only].
Length = 225
Score = 27.7 bits (62), Expect = 6.7
Identities = 12/72 (16%), Positives = 17/72 (23%), Gaps = 23/72 (31%)
Query: 96 VCKKCLTPKPPRTHHC---------------------SICDQCILKMDHHCPWMNHCVGH 134
C C PPR C ++C C L + H C+
Sbjct: 2 RCLLCRLLLPPRCWLCLLLLFFPGLCSGCQADLPLIGNLCPLCGLPLSSHACRCGECLAK 61
Query: 135 W--NHRYFYMFM 144
R +
Sbjct: 62 PPPFERLRSLGS 73
>gnl|CDD|220591 pfam10131, PTPS_related, 6-pyruvoyl-tetrahydropterin synthase
related domain; membrane protein. This domain is found
in various bacterial hypothetical membrane proteins, as
well as in tetratricopeptide TPR_2 repeat protein. The
exact function of the domain has not, as yet, been
established.
Length = 620
Score = 28.1 bits (63), Expect = 7.0
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 19 SIGPFLTVLVIFISGFTVFIAYWILFPFY 47
F+ ++V + F + + P
Sbjct: 229 RTPGFVALIVYLVLTFGSALPILVKLPLN 257
>gnl|CDD|238830 cd01660, ba3-like_Oxidase_I, ba3-like heme-copper oxidase subunit
I. The ba3 family of heme-copper oxidases are
transmembrane protein complexes in the respiratory
chains of prokaryotes and some archaea which catalyze
the reduction of O2 and simultaneously pump protons
across the membrane. It has been proposed that Archaea
acquired heme-copper oxidases through gene transfer
from Gram-positive bacteria. The ba3 family contains
oxidases that lack the conserved residues that form the
D- and K-pathways in CcO and ubiquinol oxidase. Instead
they contain a potential alternative K-pathway.
Additional proton channels have been proposed for this
family of oxidases but none have been identified
definitively. For general information on the
heme-copper oxidase superfamily, please see cd00919.
Length = 473
Score = 28.0 bits (63), Expect = 7.6
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 29 IFISGFTVFI-AYWILFPFYRRQSEWLAYTLAVIG 62
FI GF I A +L + R+ W + L VIG
Sbjct: 62 FFIMGFFYAIVARALLRSLFNRRLAWAGFWLMVIG 96
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.142 0.485
Gapped
Lambda K H
0.267 0.0721 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,775,650
Number of extensions: 1702739
Number of successful extensions: 3433
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3410
Number of HSP's successfully gapped: 149
Length of query: 341
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 243
Effective length of database: 6,590,910
Effective search space: 1601591130
Effective search space used: 1601591130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (26.5 bits)