RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14167
(341 letters)
>d1d4ba_ d.15.2.1 (A:) Cell death-inducing effector B (CIDE-B),
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 28.2 bits (63), Expect = 0.61
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 88 SVSSKSSDVCKKCLTPKPPRTHHCSICD 115
SVS+ SS+ ++ T PP +CD
Sbjct: 15 SVSNISSEFGRRVWTSAPPPQRPFRVCD 42
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 26.0 bits (57), Expect = 1.2
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 96 VCKKCL-TPKPPRTHHC--SICDQCILKMDHHCP 126
C++C K P+ C ++C C+ CP
Sbjct: 8 RCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCP 41
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 27.4 bits (60), Expect = 1.4
Identities = 5/36 (13%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 86 KHSVSSKSSDVCKKCLTPK---PPRTHHCSICDQCI 118
+ +V+ + C C + C C + +
Sbjct: 40 RKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNV 75
>d1vfia1 g.84.1.1 (A:4-95) Vanadium-binding protein 2, vanabin 2
{Vanadium-rich ascidian (Ascidia sydneiensis samea)
[TaxId: 79730]}
Length = 92
Score = 26.3 bits (57), Expect = 1.8
Identities = 6/47 (12%), Positives = 10/47 (21%)
Query: 81 PGHPPKHSVSSKSSDVCKKCLTPKPPRTHHCSICDQCILKMDHHCPW 127
P K + K + + C D+ C
Sbjct: 16 PLTACKEKCAESCETSADKKTCRRNCKKADCEPQDKVCDACRMKCHK 62
>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor
alpha subunit, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 129
Score = 27.1 bits (60), Expect = 1.9
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 212 SYYLETYQFRYKSLMFLSLVLCVIFCAVLTLSLWHAKLISGGETSVEFLKNKYEMTKKKK 271
S+ E +YK LV V F +LTL+ + KLI + F +++
Sbjct: 46 SFTHEALTLKYKLDNQFELVFVVGFQKILTLT-YVDKLID--DVHRLFRDKYRTEIQQQS 102
Query: 272 EGGTFKNPFDF 282
FDF
Sbjct: 103 ALSLLNGTFDF 113
>d1gv3a1 a.2.11.1 (A:25-126) Mn superoxide dismutase (MnSOD)
{Anabaena sp. [TaxId: 1167]}
Length = 102
Score = 26.5 bits (58), Expect = 2.2
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 108 THHCSICDQCILKMDHHCPWMNHCVGHWNHRYFYMFM 144
+ + D + D N+ GH NH F+ M
Sbjct: 64 SVEALLRDLNSVPEDIRTTVRNNGGGHLNHTIFWQIM 100
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 25.6 bits (55), Expect = 3.0
Identities = 5/32 (15%), Positives = 7/32 (21%)
Query: 94 SDVCKKCLTPKPPRTHHCSICDQCILKMDHHC 125
C C + C +C C
Sbjct: 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDC 47
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus
(Penicillium simplicissimum) [TaxId: 69488]}
Length = 287
Score = 27.1 bits (59), Expect = 3.1
Identities = 3/78 (3%), Positives = 9/78 (11%), Gaps = 7/78 (8%)
Query: 64 WILINFVFNYYMGFSTSPGHPPKHSVSSKSSDVCKKCLTPKPPRTHHCSICDQCILKMDH 123
+ + + S + + K
Sbjct: 123 RVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIA-------KVSGEDAMMQYAVTKKRCQ 175
Query: 124 HCPWMNHCVGHWNHRYFY 141
R +
Sbjct: 176 EAGLDFIGTFTVGMREMH 193
>d1pbga_ c.1.8.4 (A:) 6-phospho-beta-D-galactosidase, PGAL
{Lactococcus lactis [TaxId: 1358]}
Length = 468
Score = 27.1 bits (59), Expect = 3.3
Identities = 10/104 (9%), Positives = 21/104 (20%), Gaps = 10/104 (9%)
Query: 44 FPFYRRQSEWLAYTLAVIGNWILINFVFNYYMGFSTSPGHPPKHSVSSKSSDVCKKCLTP 103
+ + + + W N + G PP K L
Sbjct: 135 IEHFIDYAAFCFEEFPEVNYWTTFNEIGPIGDGQYLVGKFPPG----------IKYDLAK 184
Query: 104 KPPRTHHCSICDQCILKMDHHCPWMNHCVGHWNHRYFYMFMIYT 147
H+ + +K+ + Y +
Sbjct: 185 VFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHALPTKYPYDPEN 228
>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis
elegans [TaxId: 6239]}
Length = 312
Score = 27.0 bits (59), Expect = 3.5
Identities = 13/122 (10%), Positives = 35/122 (28%), Gaps = 13/122 (10%)
Query: 78 STSPGHPPKHSVSSKSSDVCKKCLTPKPPRTHHCSICDQCILKMDHHCPWMNHCVGHWNH 137
S+ P P + ++ + L + + L + + +
Sbjct: 187 SSDPVGPAESLFGQSYYELLRDALKEDGILSSQG---ESVWLHLPLIAHLVAFNRKIFPA 243
Query: 138 RYFYMFMIYTLLGCAFLFIIG--------YRPAYSILVANSKHFDFHY--ENVHDVLAAI 187
+ ++ T + ++I PA ++ K + + VH +
Sbjct: 244 VTYAQSIVSTYPSGSMGYLICAKNANRDVTTPARTLTAEQIKALNLRFYNSEVHKAAFVL 303
Query: 188 PE 189
P+
Sbjct: 304 PQ 305
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 315
Score = 27.0 bits (59), Expect = 3.8
Identities = 13/102 (12%), Positives = 28/102 (27%), Gaps = 4/102 (3%)
Query: 64 WILINFVFNYYMGFSTSPGHPPKHSVSSKSSDVCKKCLTPKPPRTHHCSICDQCILKMDH 123
IL + + + + G P + + + R + L +
Sbjct: 169 IILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRP--LTKEQ 226
Query: 124 HCPWMNHCVGHWNHRYFYMFMIYTLLGCAFLFII--GYRPAY 163
+ + + R + L A F+ GY P +
Sbjct: 227 IRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVF 268
>d1ix9a1 a.2.11.1 (A:1-90) Mn superoxide dismutase (MnSOD)
{Escherichia coli [TaxId: 562]}
Length = 90
Score = 25.3 bits (55), Expect = 3.9
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 113 ICDQCILKMDHHCPWMNHCVGHWNHRYFYMFM 144
I L D N+ GH NH F+ +
Sbjct: 57 ITKLDQLPADKKTVLRNNAGGHANHSLFWKGL 88
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]}
Length = 140
Score = 25.8 bits (56), Expect = 5.4
Identities = 12/60 (20%), Positives = 19/60 (31%)
Query: 270 KKEGGTFKNPFDFGWKTNWRIFLGLYGGRTIWRHILLPSTHKPLDNGVTWTTSEDIQAMI 329
K+ T K P + G TNW ++ + P H L + + M
Sbjct: 55 KRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 114
>d1gwya_ b.97.1.1 (A:) Sticholysin II {Carribean sea anemone
(Stoichactis helianthus) [TaxId: 6123]}
Length = 175
Score = 26.0 bits (57), Expect = 5.5
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 264 YEMTKKKKEGGTFKNPFDFGWKTNWRIFLGLYGGR 298
Y M+ G F PFD+ W +NW + +Y G+
Sbjct: 90 YYMSSGNTLGVMFSVPFDYNWYSNW-WDVKIYSGK 123
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger
domain-containing protein 1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 56
Score = 23.9 bits (52), Expect = 6.3
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 3/19 (15%)
Query: 110 HCSICDQCI---LKMDHHC 125
HC C+ C+ L+ H C
Sbjct: 36 HCLKCNLCLTTNLRGKHKC 54
>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing
protein At1g12440 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 74
Score = 24.1 bits (52), Expect = 7.6
Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 6/54 (11%)
Query: 88 SVSSKSSDVCKKCLTPKPPRTHHCSICDQCILKMDHHCPWMNHCVGH--WNHRY 139
S ++ D L P C C++ + C C HRY
Sbjct: 5 SSGTRGGDSAAAPLDPPKSTATRCLSCNKKVGVTGFKC----RCGSTFCGTHRY 54
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 89
Score = 24.5 bits (53), Expect = 7.7
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 7/47 (14%)
Query: 83 HP--PKHS--VSSKSSDVCKKCLTPKPPRTHHCSICDQCILKMDHHC 125
H +H ++ C KC ++HC CD + C
Sbjct: 32 HVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECD---FDLHAKC 75
>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312
{Thermotoga maritima [TaxId: 2336]}
Length = 181
Score = 25.3 bits (54), Expect = 9.0
Identities = 8/113 (7%), Positives = 27/113 (23%), Gaps = 2/113 (1%)
Query: 84 PPKHSVSSKSSDVCKKCLTPKPPRTHHCSICDQCILKMDHHCPWMNHCVGHWNHRYFYM- 142
+ + V + + D L + +
Sbjct: 38 RTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLPFIEKALRKGVHVICE 97
Query: 143 -FMIYTLLGCAFLFIIGYRPAYSILVANSKHFDFHYENVHDVLAAIPEGKLGR 194
+ + + + + ++ +A + + + + D + EGK
Sbjct: 98 KPISTDVETGKKVVELSEKSEKTVYIAENFRENSYQKEFEDFYQVVAEGKPND 150
>d2v4jc1 d.203.1.1 (C:3-105) DsrC, the gamma subunit of
dissimilatory sulfite reductase {Desulfovibrio vulgaris
[TaxId: 881]}
Length = 103
Score = 24.6 bits (54), Expect = 9.7
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 64 WILINFVFNYYMGFSTSP 81
+I+F+ +YY +P
Sbjct: 45 QKIIDFLQDYYKKNGIAP 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.329 0.142 0.485
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,430,032
Number of extensions: 69964
Number of successful extensions: 370
Number of sequences better than 10.0: 1
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 69
Length of query: 341
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 255
Effective length of database: 1,226,816
Effective search space: 312838080
Effective search space used: 312838080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.9 bits)