BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14168
(276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|B Chain B, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|C Chain C, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|D Chain D, Crystal Structure Of Human Daam1 Fh2
Length = 419
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 80/152 (52%), Gaps = 4/152 (2%)
Query: 101 LGSAENFLLELSNINELVARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAI 160
+ A+ FL E+S IN RL+ FK + EV + ++ G + + R+ K +
Sbjct: 161 MAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQL 220
Query: 161 LSTLLSIGIFLNGTE---VKGFQIEYLTKVPEVKDTVHKH-SLLHHLCDLVLHQFPQSTD 216
L +L+ G ++N + GF+I L K+ + K ++ K+ +LLH+L +V +++P +
Sbjct: 221 LEVVLAFGNYMNKGQRGNAYGFKISSLNKIADTKSSIDKNITLLHYLITIVENKYPSVLN 280
Query: 217 LYSEIGPVTRASKVDFDELASSLRRMETECKA 248
L E+ + +A+KV+ EL + + + KA
Sbjct: 281 LNEELRDIPQAAKVNMTELDKEISTLRSGLKA 312
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment
Length = 483
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 80/152 (52%), Gaps = 4/152 (2%)
Query: 101 LGSAENFLLELSNINELVARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAI 160
+ A+ FL E+S IN RL+ FK + EV + ++ G + + R+ K +
Sbjct: 159 MAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQL 218
Query: 161 LSTLLSIGIFLNGTE---VKGFQIEYLTKVPEVKDTVHKH-SLLHHLCDLVLHQFPQSTD 216
L +L+ G ++N + GF+I L K+ + K ++ K+ +LLH+L +V +++P +
Sbjct: 219 LEVVLAFGNYMNKGQRGNAYGFKISSLNKIADTKSSIDKNITLLHYLITIVENKYPSVLN 278
Query: 217 LYSEIGPVTRASKVDFDELASSLRRMETECKA 248
L E+ + +A+KV+ EL + + + KA
Sbjct: 279 LNEELRDIPQAAKVNMTELDKEISTLRSGLKA 310
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|H Chain H, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|G Chain G, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|F Chain F, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 467
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 4/149 (2%)
Query: 101 LGSAENFLLELSNINELVARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAI 160
L +E F + + + L RL FKL + + ++ + + LR++ F ++
Sbjct: 167 LAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSL 226
Query: 161 LSTLLSIGIFLNGTEVK----GFQIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTD 216
L L +G ++N GF I +L K+ + K K +LLH L +L + P+
Sbjct: 227 LELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLK 286
Query: 217 LYSEIGPVTRASKVDFDELASSLRRMETE 245
E+ V +AS+V + L SL +M+ +
Sbjct: 287 FPDELAHVEKASRVSAENLQKSLDQMKKQ 315
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|F Chain F, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|G Chain G, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|H Chain H, Autoinhibited Formin Mdia1 Structure
Length = 457
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 4/149 (2%)
Query: 101 LGSAENFLLELSNINELVARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAI 160
L +E F + + + L RL FKL + + ++ + + LR++ F ++
Sbjct: 148 LAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSL 207
Query: 161 LSTLLSIGIFLNGTEVK----GFQIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTD 216
L L +G ++N GF I +L K+ + K K +LLH L +L + P+
Sbjct: 208 LELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLK 267
Query: 217 LYSEIGPVTRASKVDFDELASSLRRMETE 245
E+ V +AS+V + L SL +M+ +
Sbjct: 268 FPDELAHVEKASRVSAENLQKSLDQMKKQ 296
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|B Chain B, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|C Chain C, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|D Chain D, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
Length = 340
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 4/149 (2%)
Query: 101 LGSAENFLLELSNINELVARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAI 160
L +E F + + + L RL FKL + + ++ + + LR++ F ++
Sbjct: 77 LAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSL 136
Query: 161 LSTLLSIGIFLNGTEVK----GFQIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTD 216
L L +G ++N GF I +L K+ + K K +LLH L +L + P+
Sbjct: 137 LELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLK 196
Query: 217 LYSEIGPVTRASKVDFDELASSLRRMETE 245
E+ V +AS+V + L SL +M+ +
Sbjct: 197 FPDELAHVEKASRVSAENLQKSLDQMKKQ 225
>pdb|1UX4|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
pdb|1UX4|B Chain B, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
Length = 410
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 119 ARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGT--EV 176
+R++ YE E+ L + + + L+ + + + + +L++G F+N T +
Sbjct: 172 SRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSKQA 231
Query: 177 KGFQIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDELA 236
+GF++ L ++ +KDT + + L+++ +V +P D SE+ PV KV ++L
Sbjct: 232 QGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELEPVLDVVKVSIEQLV 291
Query: 237 SSLR 240
+ +
Sbjct: 292 NDCK 295
>pdb|1UX5|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Flexibly Tethered Dimer Architecture
Length = 411
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 119 ARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGT--EV 176
+R++ YE E+ L + + + L+ + + + + +L++G F+N T +
Sbjct: 178 SRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSKQA 237
Query: 177 KGFQIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDELA 236
+GF++ L ++ +KDT + + L+++ +V +P D SE+ PV KV ++L
Sbjct: 238 QGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELEPVLDVVKVSIEQLV 297
Query: 237 SSLR 240
+ +
Sbjct: 298 NDCK 301
>pdb|1Y64|B Chain B, Bni1p Formin Homology 2 Domain Complexed With Atp-actin
Length = 443
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 119 ARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGT--EV 176
+R++ YE E+ L + + + L+ + + + + +L++G F+N T +
Sbjct: 201 SRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSKQA 260
Query: 177 KGFQIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDELA 236
+GF++ L ++ +KDT + + L+++ +V +P D SE+ PV KV ++L
Sbjct: 261 QGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELEPVLDVVKVSIEQLV 320
Query: 237 SSLR 240
+ +
Sbjct: 321 NDCK 324
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|E Chain E, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|C Chain C, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|B Chain B, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
Length = 402
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 87/185 (47%), Gaps = 13/185 (7%)
Query: 74 EKLLSMLPTDEEKCKILEAVSA--NPGVPLGSAENFLLELSNINELVARLKLWAFKLDYE 131
E L+ LPT+ E K+L P L + + F+L S + L R+ AF +++
Sbjct: 127 ECLMRFLPTEAE-VKLLRQYERERQPLEELAAEDRFMLLFSKVERLTQRMAGMAFLGNFQ 185
Query: 132 NLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGTE---VKGFQIEYLTKVP 188
+ + + L + ++ + K +L +L++G ++N ++ V GF+++ L +
Sbjct: 186 DNLQMLTPQLNAIIAASASVKSSQKLKQMLEIILALGNYMNSSKRGAVYGFKLQSLDLLL 245
Query: 189 EVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKV-------DFDELASSLRR 241
+ K T K +LLH + V ++P+ + + E+ V +A+ V D EL +
Sbjct: 246 DTKSTDRKMTLLHFIALTVKEKYPELANFWQELHFVEKAAAVSLENVLLDVKELGRGMEL 305
Query: 242 METEC 246
+ EC
Sbjct: 306 IRREC 310
>pdb|3R6Y|A Chain A, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|B Chain B, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|C Chain C, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|D Chain D, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|E Chain E, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|F Chain F, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|G Chain G, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|H Chain H, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
Length = 401
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 182 EYLTKVPE--VKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDELASSL 239
EY++ V E K + H HL D Q+TD Y+E+ + ++ ++A+ L
Sbjct: 241 EYISIVTEHLAKFSGHPLRSAQHLVDAT-----QNTDCYTEVSSALKVCMINMSKIANDL 295
Query: 240 RRMETECKASFDYLKLIIKHDGSA 263
R M + +A + L + GS+
Sbjct: 296 RLMASGPRAGLSEIVLPARQPGSS 319
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|1J3U|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|3R6Q|A Chain A, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|B Chain B, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|C Chain C, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|D Chain D, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|E Chain E, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|F Chain F, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|G Chain G, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|H Chain H, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6V|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|C Chain C, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|D Chain D, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|E Chain E, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|F Chain F, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|G Chain G, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|H Chain H, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
Length = 468
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 182 EYLTKVPE--VKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDELASSL 239
EY++ V E K + H HL D Q+TD Y+E+ + ++ ++A+ L
Sbjct: 241 EYISIVTEHLAKFSGHPLRSAQHLVDAT-----QNTDCYTEVSSALKVCMINMSKIANDL 295
Query: 240 RRMETECKASFDYLKLIIKHDGSA 263
R M + +A + L + GS+
Sbjct: 296 RLMASGPRAGLSEIVLPARQPGSS 319
>pdb|4E5S|A Chain A, Crystal Structure Of Mccflike Protein (Ba_5613) From
Bacillus Anthracis Str. Ames
pdb|4E5S|B Chain B, Crystal Structure Of Mccflike Protein (Ba_5613) From
Bacillus Anthracis Str. Ames
pdb|4E5S|C Chain C, Crystal Structure Of Mccflike Protein (Ba_5613) From
Bacillus Anthracis Str. Ames
pdb|4E5S|D Chain D, Crystal Structure Of Mccflike Protein (Ba_5613) From
Bacillus Anthracis Str. Ames
Length = 331
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 78 SMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENLEREV 137
+ LPT +K + +S + + + S EN L + + EL + F E ++R
Sbjct: 3 AXLPTKLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHV---TFSTHAEEIDRFA 59
Query: 138 AEPLMDLKQGMDILRRNPTFKAILSTL 164
+ + Q + R+P KAIL+TL
Sbjct: 60 SSSISSRVQDLHEAFRDPNVKAILTTL 86
>pdb|1LAF|E Chain E, Structural Bases For Multiple Ligand Specificity Of The
Periplasmic Lysine-, Arginine-, Ornithine-binding
Protein
pdb|1LAG|E Chain E, Structural Bases For Multiple Ligand Specificity Of The
Periplasmic Lysine-, Arginine-, Ornithine-Binding
Protein
pdb|1LAH|E Chain E, Structural Bases For Multiple Ligand Specificity Of The
Periplasmic Lysine-, Arginine-, Ornithine-Binding
Protein
pdb|2LAO|A Chain A, Three-Dimensional Structures Of The Periplasmic Lysine-,
Arginine-, Ornithine-Binding Protein With And Without A
Ligand
Length = 238
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 218 YSEIGPVTRASKVDFDELASSLRRMETECKASFDYLKLIIKHDGS 262
Y+ GP + K D LR+ +TE KA+FD ++ DG+
Sbjct: 178 YAFAGPSVKDKKYFGDGTGVGLRKDDTELKAAFDKALTELRQDGT 222
>pdb|1LST|A Chain A, Three-Dimensional Structures Of The Periplasmic Lysine-,
Arginine-, Ornithine-Binding Protein With And Without A
Ligand
Length = 239
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 218 YSEIGPVTRASKVDFDELASSLRRMETECKASFDYLKLIIKHDGS 262
Y+ GP + K D LR+ +TE KA+FD ++ DG+
Sbjct: 178 YAFAGPSVKDKKYFGDGTGVGLRKDDTELKAAFDKALTELRQDGT 222
>pdb|3U44|A Chain A, Crystal Structure Of Addab-Dna Complex
pdb|3U4Q|A Chain A, Structure Of Addab-Dna Complex At 2.8 Angstroms
Length = 1232
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 24 KCKILEAV--SANPGVPLGSAENFLLELSNINELV 56
K K+L A+ + PG P A+NFL +L+ I+EL+
Sbjct: 234 KEKLLRALELTKAPGGPAPRADNFLDDLAQIDELI 268
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 86 KCKILEAV--SANPGVPLGSAENFLLELSNINELV 118
K K+L A+ + PG P A+NFL +L+ I+EL+
Sbjct: 234 KEKLLRALELTKAPGGPAPRADNFLDDLAQIDELI 268
>pdb|1X9N|A Chain A, Crystal Structure Of Human Dna Ligase I Bound To
5'-Adenylated, Nicked Dna
Length = 688
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 49/179 (27%)
Query: 11 IEKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYEN 70
+E L LP E CK+ +PG+PL I+E++ R + AF +Y+
Sbjct: 290 LEHGLERLP---EHCKL------SPGIPL--KPXLAHPTRGISEVLKRFEEAAFTCEYKY 338
Query: 71 LEREKLLSMLPTDEEKC----------KILEAVSANPGVPLGSAENFLLELSNI------ 114
+ + L E K K + +S P + L S +F+L+ +
Sbjct: 339 DGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREK 398
Query: 115 -------------------NELVARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRN 154
+E+ ++ L+AF L Y N E V EPL +Q +LR N
Sbjct: 399 KQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLVREPLSRRRQ---LLREN 454
>pdb|4I6M|D Chain D, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of
Swi/snf Chromatin Remodeler
Length = 157
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 93 VSAN---PGVPLGSAENFLLELSNINELVARLKLW-AFKLDYENLEREVAEPLMDLKQ 146
VS+N P LG EN N+ + R K W + D +NL+RE E ++DLK+
Sbjct: 35 VSSNVQQPQQQLGDXEN------NLEKYPFRYKTWLRNQEDEKNLQRESCEDILDLKE 86
>pdb|3TE4|A Chain A, Crystal Structure Of Dopamine N Acetyltransferase In
Complex With Acetyl-Coa From Drosophila Melanogaster
Length = 215
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 100 PLGSAENF-LLELSNINELVARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFK 158
PLGS L++ + ++A LK + FK + N ++ E K + L N ++K
Sbjct: 2 PLGSPYTIELIQPEDGEAVIAMLKTFFFKDEPLNTFLDLGECKELEKYSLKPLPDNCSYK 61
Query: 159 AILSTLLSIGIFLNG 173
A+ IG+FLNG
Sbjct: 62 AVNKKGEIIGVFLNG 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,844,964
Number of Sequences: 62578
Number of extensions: 299839
Number of successful extensions: 875
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 852
Number of HSP's gapped (non-prelim): 25
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)