Query psy14168
Match_columns 276
No_of_seqs 151 out of 892
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 21:09:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00498 FH2 Formin Homology 100.0 1.5E-54 3.2E-59 417.3 19.0 260 5-273 36-318 (432)
2 PF02181 FH2: Formin Homology 100.0 7.7E-52 1.7E-56 390.7 19.3 260 5-273 40-317 (370)
3 KOG1924|consensus 100.0 6E-47 1.3E-51 369.2 15.0 238 27-273 696-937 (1102)
4 KOG1925|consensus 100.0 1.9E-35 4.2E-40 278.4 16.6 262 2-273 314-588 (817)
5 KOG1923|consensus 100.0 3.7E-34 8.1E-39 280.4 11.3 246 2-255 385-664 (830)
6 KOG1922|consensus 100.0 6.3E-28 1.4E-32 249.2 17.7 238 26-272 465-725 (833)
7 KOG1925|consensus 97.5 8.5E-05 1.8E-09 71.9 4.5 71 2-72 380-450 (817)
8 PF07334 IFP_35_N: Interferon- 37.4 77 0.0017 23.4 4.4 35 232-266 2-41 (76)
9 PF06769 Plasmid_Txe: Plasmid 34.3 45 0.00097 24.8 2.8 35 241-275 18-53 (80)
10 PF05659 RPW8: Arabidopsis bro 32.2 1.3E+02 0.0027 25.0 5.5 88 74-164 41-133 (147)
11 TIGR02894 DNA_bind_RsfA transc 27.7 98 0.0021 26.2 4.1 20 167-186 36-56 (161)
12 PF10805 DUF2730: Protein of u 25.3 63 0.0014 25.1 2.4 39 214-254 51-89 (106)
13 PF06780 Erp_C: Erp protein C- 25.0 1E+02 0.0022 25.6 3.5 27 229-255 106-132 (146)
14 PF10234 Cluap1: Clusterin-ass 24.9 3.7E+02 0.0081 24.6 7.7 136 114-254 43-193 (267)
15 PF13907 DUF4208: Domain of un 24.8 32 0.00069 26.5 0.7 40 134-173 22-61 (100)
16 PF09006 Surfac_D-trimer: Lung 23.8 2.3E+02 0.005 18.9 4.5 29 232-260 1-29 (46)
17 PF10191 COG7: Golgi complex c 21.5 69 0.0015 33.7 2.5 51 222-273 63-120 (766)
18 PF08227 DASH_Hsk3: DASH compl 20.0 2.1E+02 0.0045 18.9 3.7 42 232-274 4-45 (45)
No 1
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=100.00 E-value=1.5e-54 Score=417.33 Aligned_cols=260 Identities=25% Similarity=0.323 Sum_probs=239.3
Q ss_pred ccChhhhhHHhccCCCh-------------------hHHHHHHHhhhcCCCcccccccchhhhccCHHHHHHHhhcCccC
Q psy14168 5 VVNREGIEKLLSMLPTD-------------------EEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFK 65 (276)
Q Consensus 5 ~~~~~~iE~lf~~~~~~-------------------~~~~~i~~~raqN~~I~L~~~k~~~l~l~~~~~~~ail~~D~~~ 65 (276)
.++.+.||.+|+..++. ++++.|+++|+||++|+|++++ ++..++++||+.||...
T Consensus 36 ~~d~~~lE~lF~~k~~~~~~~~~~~~~~~~~~~~~~~~v~ild~krs~ni~I~L~~l~-----~~~~ei~~ai~~~d~~~ 110 (432)
T smart00498 36 EGDLDELEELFAAKEKTKSASKDVSEKKSILKKKVSQEFKILDPKRSQNLAILLRKLH-----MSYEEICEAILEGDEDV 110 (432)
T ss_pred ccCHHHHHHHhCcCccccCccccccccccccccccccceEeechhHHhhHHHHHHhcC-----CCHHHHHHHHHhcChhh
Confidence 58899999999863221 1123467799999999999974 78888999999999999
Q ss_pred CChhhhhHHHHhccCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14168 66 LDYENLEREKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENLEREVAEPLMDLK 145 (276)
Q Consensus 66 L~~e~l~~~~Ll~~~Pt~eE~~~l~~~~~~~~~~~L~~~E~F~~~l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~~~ 145 (276)
|+.+.+ +.|++++||+||+..+++|.++++ +.|++||||++.|++||++..||+||+|+.+|++.++++.+.+..+.
T Consensus 111 l~~e~l--~~L~~~~Pt~eE~~~l~~~~~~~~-~~L~~~Eqfl~~l~~ip~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~ 187 (432)
T smart00498 111 LSVDLL--EQLLKYAPTKEELKKLREYKEEDP-EELARAEQFLLLISNIPYLEERLNALLFKANFEEEVEDLKPQLEKVE 187 (432)
T ss_pred CCHHHH--HHHHhhCcCHHHHHHHHHhcccch-hhcchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 999999999999999999953334 68999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChhHHHHHHHHHHhhhhcCC----CcccceeccccccccccccCCCcchHHHHHHHHHHhhCCCccchhccc
Q psy14168 146 QGMDILRRNPTFKAILSTLLSIGIFLNG----TEVKGFQIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEI 221 (276)
Q Consensus 146 ~a~~~l~~S~~l~~lL~~vL~iGN~lNG----g~A~GFkL~sL~KL~d~Ks~d~k~tLLhylv~~~~~~~p~ll~~~~eL 221 (276)
.||++|++|+.|+.+|++||++|||||| |+|+||+|+||.||.|||++|+++|||||||+.+.+++|++++|.+||
T Consensus 188 ~a~~~l~~S~~l~~lL~~iL~~GN~mN~g~~rg~A~GFkL~sL~KL~d~Ks~d~k~tLLhylv~~i~~~~p~~~~f~~el 267 (432)
T smart00498 188 AACEELRESKKFRKLLELILAIGNYMNSGSRRGQAYGFKLSSLLKLSDVKSADNKTTLLHFLVKIIRKKYPDLLDFYSDL 267 (432)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHhCcccCCCcCCCcceeeHHHHHHHHhhhccCCCccHHHHHHHHHHHhChhhccchhhh
Confidence 9999999999999999999999999994 489999999999999999999999999999999999999999999999
Q ss_pred cchHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhhhhhhc
Q psy14168 222 GPVTRASKVDFDELASSLRRMETECKASFDYLKLIIKHDGSATSVKVKTQGA 273 (276)
Q Consensus 222 ~~v~~Aa~v~l~~l~~d~~~L~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 273 (276)
++|..|++++ +++.+++++++++++.++..+..++.+...++.|..+|..|
T Consensus 268 ~~v~~askvs-~~l~~~~~~l~~~~~~~e~~~~~l~~~~~~~d~f~~~m~~F 318 (432)
T smart00498 268 HHLDKAKVNL-EQLEKDVKQLERQIKNLETDLGGLSDPENLDDKFIEVMKPF 318 (432)
T ss_pred ccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHH
Confidence 9999999999 99999999999999999998888888877678999888765
No 2
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=100.00 E-value=7.7e-52 Score=390.69 Aligned_cols=260 Identities=33% Similarity=0.447 Sum_probs=230.3
Q ss_pred ccChhhhhHHhccCCChh--------------HHHHHHHhhhcCCCcccccccchhhhccCHHHHHHHhhcCccCCChhh
Q psy14168 5 VVNREGIEKLLSMLPTDE--------------EKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYEN 70 (276)
Q Consensus 5 ~~~~~~iE~lf~~~~~~~--------------~~~~i~~~raqN~~I~L~~~k~~~l~l~~~~~~~ail~~D~~~L~~e~ 70 (276)
.++...+|.+|+..+... ..+.|+++|+||++|+|+++ .++..++++||..||...|+.|.
T Consensus 40 ~~d~~~le~~F~~~~~~~~~~~~~~~~~~~~~~~~iLd~kr~~ni~I~L~~~-----~~~~~~l~~ai~~~d~~~l~~e~ 114 (370)
T PF02181_consen 40 DIDFEELEELFAKKEKEKKSKKKQASKKKKKKKISILDPKRSQNIGIVLKKF-----KLSPEELIQAILNLDEEVLTEEL 114 (370)
T ss_dssp TSHHHHHHHHTBSCECHHHH----HCCCCTTCCESSS-HHHHHHHHHHHHHH-----TS-HHHHHHHHHTTTTCCCTHHH
T ss_pred hhhHHHHHHHhccccccccccccccccccccccccccchHHHHHHHHHhhcc-----CCCHHHHHHHHHccCccccchHH
Confidence 345677899998754331 11235778999999999996 47888899999999999999999
Q ss_pred hhHHHHhccCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14168 71 LEREKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENLEREVAEPLMDLKQGMDI 150 (276)
Q Consensus 71 l~~~~Ll~~~Pt~eE~~~l~~~~~~~~~~~L~~~E~F~~~l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~~~~a~~~ 150 (276)
+ +.|++++||+||++.+++|. +++ +.|+++|+|++.+++||+++.||+||.|+.+|++.++++.+.+..+..||++
T Consensus 115 l--~~L~~~~Pt~eE~~~l~~~~-~~~-~~L~~~E~f~~~l~~ip~~~~rl~~~~~~~~f~~~~~~l~~~l~~l~~a~~~ 190 (370)
T PF02181_consen 115 L--ENLLKILPTPEEIEALKAYK-GDP-ATLGPAEQFLLELSKIPRLKERLEALLFKSEFEEQLEELKEKLEKLEAACEE 190 (370)
T ss_dssp H--HHHHHHCGGHHHHHHHHCTC-TSG-TTB-HHHHHHHHHTTSTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHhcCCCchHHHHHHHHh-ccH-HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999884 444 6999999999999999999999999999999999999999999999999999
Q ss_pred HhcChhHHHHHHHHHHhhhhcC-C---CcccceeccccccccccccCCCcchHHHHHHHHHHhhCCCccchhccccchHH
Q psy14168 151 LRRNPTFKAILSTLLSIGIFLN-G---TEVKGFQIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTR 226 (276)
Q Consensus 151 l~~S~~l~~lL~~vL~iGN~lN-G---g~A~GFkL~sL~KL~d~Ks~d~k~tLLhylv~~~~~~~p~ll~~~~eL~~v~~ 226 (276)
+++|+.|+.+|++||++||||| | |+|+||+|+||.||.+||++|+++||||||++++.+++|++..|.+||++|..
T Consensus 191 l~~S~~l~~lL~~iL~~GN~lN~g~~~g~A~GF~L~sL~kL~~~Ks~d~~~tLL~~l~~~~~~~~~~~~~~~~eL~~v~~ 270 (370)
T PF02181_consen 191 LRESKSLRRLLEIILAIGNFLNGGTPRGNAKGFKLSSLSKLKDTKSNDNKTTLLHYLVKIVEEKFPDLLDLEDELSSVEK 270 (370)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHSTCSTTCS-SEE-GGGGGGCCCSB-STTTSBHHHHHHHHHHTTSGGGGGHHHHTTTHHH
T ss_pred HHcCchHHHHHHHHHHHHHHhccCCCccccceecHHhHHHHHhcccccCCchHHHHHHHHHHhcChHHhccHHHHhhHHh
Confidence 9999999999999999999999 4 59999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhhhhhhc
Q psy14168 227 ASKVDFDELASSLRRMETECKASFDYLKLIIKHDGSATSVKVKTQGA 273 (276)
Q Consensus 227 Aa~v~l~~l~~d~~~L~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 273 (276)
|++++++++.+++++|+++++.++.+++.........+.|..+|..|
T Consensus 271 a~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f 317 (370)
T PF02181_consen 271 ASKVSLDELEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEF 317 (370)
T ss_dssp CCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHH
Confidence 99999999999999999999999999999888666668888888765
No 3
>KOG1924|consensus
Probab=100.00 E-value=6e-47 Score=369.18 Aligned_cols=238 Identities=23% Similarity=0.338 Sum_probs=226.1
Q ss_pred HHHhhhcCCCcccccccchhhhccCHHHHHHHhhcCccCCChhhhhHHHHhccCCCHHHHHHHHHHHhCCCCCCCChHHH
Q psy14168 27 ILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENLEREKLLSMLPTDEEKCKILEAVSANPGVPLGSAEN 106 (276)
Q Consensus 27 i~~~raqN~~I~L~~~k~~~l~l~~~~~~~ail~~D~~~L~~e~l~~~~Ll~~~Pt~eE~~~l~~~~~~~~~~~L~~~E~ 106 (276)
+++|-|||+||+|++|| ++..+|+.+|+++|+++|++..| ++|++++|.+|-+..|.++... .+.|.++||
T Consensus 696 lDsKtaQnLsIflgS~r-----mpyeeik~~ILevne~vLse~~i--qnLik~lPe~E~l~~L~e~Kae--ye~l~e~EQ 766 (1102)
T KOG1924|consen 696 LDSKTAQNLSIFLGSFR-----MPYEEIKNVILEVNEDVLSESMI--QNLIKHLPEQEQLNKLSELKAE--YEDLPEPEQ 766 (1102)
T ss_pred cchHHHHHHHHHHhhcc-----CCHHHHHHHHhhccHHHHHHHHH--HHHHHhCCCHHHHHHHHHHHHh--ccCCCCHHH
Confidence 35689999999999987 56667778999999999999999 9999999999999999998543 358999999
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHhhhhcCCC----cccceecc
Q psy14168 107 FLLELSNINELVARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGT----EVKGFQIE 182 (276)
Q Consensus 107 F~~~l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~~~~a~~~l~~S~~l~~lL~~vL~iGN~lNGg----~A~GFkL~ 182 (276)
|...|..|++++.||.+++||.+|.+.++.|+|.+..+..||+++|.|++|.++|++||.+||||||| +|+||.++
T Consensus 767 F~vvm~~vkrL~pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrNa~afgF~is 846 (1102)
T KOG1924|consen 767 FVVVMSQVKRLRPRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRNAQAFGFNIS 846 (1102)
T ss_pred HhHHHhhccccChhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchhhccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999954 89999999
Q ss_pred ccccccccccCCCcchHHHHHHHHHHhhCCCccchhccccchHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy14168 183 YLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDELASSLRRMETECKASFDYLKLIIKHDGS 262 (276)
Q Consensus 183 sL~KL~d~Ks~d~k~tLLhylv~~~~~~~p~ll~~~~eL~~v~~Aa~v~l~~l~~d~~~L~~~l~~~~~~l~~~~~~~~~ 262 (276)
+|+||.|||++|+|+||||||++.++++||+.+.|.+||.+|.+||+|+.+.+...+..++..+++++..++.++-..-+
T Consensus 847 ~L~kL~dTKsaDqk~TLLHfLae~~e~kypd~l~F~ddl~hv~kaSrvnad~ikK~~~~m~~~ik~Le~dlk~~~~~~~e 926 (1102)
T KOG1924|consen 847 FLCKLRDTKSADQKTTLLHFLAEICEEKYPDILKFPDDLEHVEKASRVNADEIKKNLQQMENQIKKLERDLKNFKIAGNE 926 (1102)
T ss_pred HHHhhccccccchhhHHHHHHHHHHHHhChhhhcchhhHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cchhhhhhhhc
Q psy14168 263 ATSVKVKTQGA 273 (276)
Q Consensus 263 ~~~~~~~~~~~ 273 (276)
.|.|..||-.|
T Consensus 927 ~dkF~ekM~~F 937 (1102)
T KOG1924|consen 927 HDKFVEKMTSF 937 (1102)
T ss_pred hhhHHHHhhHH
Confidence 89999999765
No 4
>KOG1925|consensus
Probab=100.00 E-value=1.9e-35 Score=278.40 Aligned_cols=262 Identities=48% Similarity=0.791 Sum_probs=238.3
Q ss_pred CCcccChhhhhHHhccC-----CChh---HH----HHHHHhhhcCCCcccccccchhhhccCHH-HHHHHhhcCccCCCh
Q psy14168 2 DSTVVNREGIEKLLSML-----PTDE---EK----CKILEAVSANPGVPLGSAENFLLELSNIN-ELVARLKLWAFKLDY 68 (276)
Q Consensus 2 ~~~~~~~~~iE~lf~~~-----~~~~---~~----~~i~~~raqN~~I~L~~~k~~~l~l~~~~-~~~ail~~D~~~L~~ 68 (276)
|+.+|+-..||.||.-. |..+ .+ +.+..||+|.|.|-|.. ++++. |..||+.+|+.+++.
T Consensus 314 D~~~~D~~r~~~LFEsr~~~~~P~KK~~E~r~~~~tVL~~KRt~AINIGLT~-------LPPv~VI~AA~~~FD~~~~~K 386 (817)
T KOG1925|consen 314 DPVSVDTARLEHLFESRAKEVLPSKKAGEGRRTMTTVLDPKRTNAINIGLTT-------LPPVHVIKAALLNFDEFAVSK 386 (817)
T ss_pred CcceecHHHHHHHHHHhhhhhccchhhcccceeeeeecCcccccceeecccc-------CCchhhhHHHHhcchhhhcch
Confidence 67889999999999632 2221 11 13456899999998876 44444 447899999999999
Q ss_pred hhhhHHHHhccCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14168 69 ENLEREKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENLEREVAEPLMDLKQGM 148 (276)
Q Consensus 69 e~l~~~~Ll~~~Pt~eE~~~l~~~~~~~~~~~L~~~E~F~~~l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~~~~a~ 148 (276)
|-| +.|++++||++|++.+...+-.+|.-.|+++|||++.+++||.+.+||+.|.|+..|+..-.++.+.+-.+..|+
T Consensus 387 DGI--EK~L~MmPt~eE~qkIe~aqlaNPEipLG~AEQfLLtLSsI~~L~aRL~LWaFklDY~~~EKeiAEPL~Dlk~gm 464 (817)
T KOG1925|consen 387 DGI--EKLLTMMPTEEERQKIEGAQLANPEIPLGPAEQFLLTLSSIGGLAARLQLWAFKLDYDSMEKEIAEPLFDLKVGM 464 (817)
T ss_pred hhH--HHHHHhCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHhhhHHHHHHHHHHhhhcccchhhHHhhhHHHHHHHHH
Confidence 999 999999999999999998777888889999999999999999999999999999999999999999999999999
Q ss_pred HHHhcChhHHHHHHHHHHhhhhcCCCcccceeccccccccccccCCCcchHHHHHHHHHHhhCCCccchhccccchHHhh
Q psy14168 149 DILRRNPTFKAILSTLLSIGIFLNGTEVKGFQIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRAS 228 (276)
Q Consensus 149 ~~l~~S~~l~~lL~~vL~iGN~lNGg~A~GFkL~sL~KL~d~Ks~d~k~tLLhylv~~~~~~~p~ll~~~~eL~~v~~Aa 228 (276)
+++-+|..|+.+|.++|+||||+||.++.||.|+.|.|..++|++..|.||+|++++++.++||+-.++++|+..+...+
T Consensus 465 ~qlE~n~Tf~~il~tLLAIGNfLnGT~~KgFeLsYLeKvsEVKDtV~KqsLlhHlc~~vVE~FpessDLYSEiGA~tRSA 544 (817)
T KOG1925|consen 465 EQLEQNATFRCILATLLAIGNFLNGTQSKGFELSYLEKVSEVKDTVRKQSLLHHLCSLVVETFPESSDLYSEIGALTRSA 544 (817)
T ss_pred HHHHhcchHHHHHHHHHHHhccccCccccceehHhhhhchhhcchHHHHHHHHHHHHHHHHhCCcchhHHHHhHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhhhhhhc
Q psy14168 229 KVDFDELASSLRRMETECKASFDYLKLIIKHDGSATSVKVKTQGA 273 (276)
Q Consensus 229 ~v~l~~l~~d~~~L~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 273 (276)
+||++++...+..|+++++..=+-|+.++||+-. --+|.+|--|
T Consensus 545 kVDf~qL~DNL~qlErrCKaSWe~L~~Iakhe~~-p~l~~r~~~f 588 (817)
T KOG1925|consen 545 KVDFEQLTDNLGQLERRCKASWESLRSIAKHELA-PALRARLTHF 588 (817)
T ss_pred hccHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcc-HHHHHHHHHH
Confidence 9999999999999999999999999999999887 4567776554
No 5
>KOG1923|consensus
Probab=100.00 E-value=3.7e-34 Score=280.36 Aligned_cols=246 Identities=22% Similarity=0.303 Sum_probs=221.6
Q ss_pred CCcccChhhhhHHhccC--CChhHHHHH----------------------------HHhhhcCCCcccccccchhhhccC
Q psy14168 2 DSTVVNREGIEKLLSML--PTDEEKCKI----------------------------LEAVSANPGVPLGSAENFLLELSN 51 (276)
Q Consensus 2 ~~~~~~~~~iE~lf~~~--~~~~~~~~i----------------------------~~~raqN~~I~L~~~k~~~l~l~~ 51 (276)
.+++|++.++|+++... ...+|.++| ...|.+|+.|-+. . .++-
T Consensus 385 ~~tvf~~~~De~Il~~lD~~~~ee~Fk~~~s~~~~~~e~~a~~~~~~ka~qk~tLle~~R~~nlaiT~R-~-----~~~~ 458 (830)
T KOG1923|consen 385 KGTVFHELNDEKILEALDFSRFEEQFKILKSNGQILDESSAVSKAMTKAPQKRTLLEQRRLFNLAITRR-V-----QMKA 458 (830)
T ss_pred ccchhhhhhHHHHHHhhhHHHHHHHHHhhhcccchhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhh-h-----cCch
Confidence 46899999999999742 444444443 2336777777765 2 2455
Q ss_pred HHHHHHHhhcCccCCChhhhhHHHHhccCCCHHHHHHHHHHHhC-CCCCCCChHHHHHHHHhcccchHHHHHHHHHHHHH
Q psy14168 52 INELVARLKLWAFKLDYENLEREKLLSMLPTDEEKCKILEAVSA-NPGVPLGSAENFLLELSNINELVARLKLWAFKLDY 130 (276)
Q Consensus 52 ~~~~~ail~~D~~~L~~e~l~~~~Ll~~~Pt~eE~~~l~~~~~~-~~~~~L~~~E~F~~~l~~ip~~~~Rl~~l~f~~~f 130 (276)
.+++.||..+|-.+|+.+.+ +.|.+++||.+|...+++|..+ .|-..|+++++|+..+.+|+|+.+|+..|-|+..|
T Consensus 459 ~~V~~Aih~~dLk~L~~~~v--e~L~r~lPTe~E~kl~~~~~~e~~pme~Ls~edkFml~lskIErle~klatM~~m~nF 536 (830)
T KOG1923|consen 459 KEVMAAIHPLDLKALSLEPV--ELLQRILPTEAEVKLLREYERERSPMENLSEEDKFMLSLSKIERLEEKLATMEFMGNF 536 (830)
T ss_pred HHHHHHhhhccccccCCcHH--HHHHhcCCchHHHHHHHHhhhhcCchhhcccchhhhhhhhhhhhhHHHHHHHHHHHhc
Confidence 67899999999999999999 9999999999999999998643 34468999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHhhhhcC-C--CcccceeccccccccccccCCCcchHHHHHHHHH
Q psy14168 131 ENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLN-G--TEVKGFQIEYLTKVPEVKDTVHKHSLLHHLCDLV 207 (276)
Q Consensus 131 ~~~~~~l~~~l~~~~~a~~~l~~S~~l~~lL~~vL~iGN~lN-G--g~A~GFkL~sL~KL~d~Ks~d~k~tLLhylv~~~ 207 (276)
.+.+..+.+++..+..|+..+++|.+|+.+|++||++||||| + |.++||+|.||.-|.+|||+|.+.|||||++-.+
T Consensus 537 ~dsv~ll~pq~~si~aAS~s~k~sr~lr~VleiILA~gNymns~kRg~ayGFklqslD~ll~tkStDr~~tLlh~iv~~i 616 (830)
T KOG1923|consen 537 PDSVQLLAPQLISIIAASKSLKESRKLRPVLEIILAFGNYMNSSKRGAAYGFKLQSLDSLLDTKSTDRSMTLLHYIVLTI 616 (830)
T ss_pred hhhhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccCCCcccccccceeccccHHHhhccCCccceeeeehhhHHH
Confidence 999999999999999999999999999999999999999999 4 7999999999999999999999999999999999
Q ss_pred HhhCCCccchhccccchHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14168 208 LHQFPQSTDLYSEIGPVTRASKVDFDELASSLRRMETECKASFDYLKL 255 (276)
Q Consensus 208 ~~~~p~ll~~~~eL~~v~~Aa~v~l~~l~~d~~~L~~~l~~~~~~l~~ 255 (276)
++++|.+..|.+||.-+++|+.++++.+..|+.+|.+|+...+++-..
T Consensus 617 ~eklp~l~~F~~el~~~eKa~av~lesV~~Dv~eL~~g~~l~~kE~e~ 664 (830)
T KOG1923|consen 617 AEKLPALQLFFSELDFVEKATAVQLESVLADVKELNAGMTLAEKETER 664 (830)
T ss_pred HHhhHHHHhhHHHhhccchhhhhhhhccchhHHHHHhHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999988654
No 6
>KOG1922|consensus
Probab=99.95 E-value=6.3e-28 Score=249.17 Aligned_cols=238 Identities=24% Similarity=0.314 Sum_probs=208.8
Q ss_pred HHHHhhhcCCCcccccccchhhhccCHHHHHHHhhcCccCCChhhhhHHHHhccCCCHHHHHHHHHHHhCCCCCCCChHH
Q psy14168 26 KILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENLEREKLLSMLPTDEEKCKILEAVSANPGVPLGSAE 105 (276)
Q Consensus 26 ~i~~~raqN~~I~L~~~k~~~l~l~~~~~~~ail~~D~~~L~~e~l~~~~Ll~~~Pt~eE~~~l~~~~~~~~~~~L~~~E 105 (276)
.+.++|+||++|+|+++. +...++.+|++.+|+.++..+++ +.+.++.|+++|...++.|. +++ ..|+.+|
T Consensus 465 v~~~r~~~n~~ill~sl~-----~~~~~~~~a~~~~~~~~~~~~~l--~~l~~~~pt~~E~~~l~~~~-~~~-~~l~~~e 535 (833)
T KOG1922|consen 465 VLDPRRPQNIAILLSSLN-----MPTEDIPQALLELDDSVLGLDQL--EKLLKFAPTKEEETKLKEES-GDP-LTLGDAE 535 (833)
T ss_pred ccCCCCccceeeehhhcC-----CchHHHHHHHhccCccccCHHHH--HHHHccCCChhHHHHHHhhc-CCC-CccchHH
Confidence 457789999999999964 66777889999999999999999 99999999999999999985 554 5899999
Q ss_pred HHHHH-HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHhhhhcC-C---Cccccee
Q psy14168 106 NFLLE-LSNINELVARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLN-G---TEVKGFQ 180 (276)
Q Consensus 106 ~F~~~-l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~~~~a~~~l~~S~~l~~lL~~vL~iGN~lN-G---g~A~GFk 180 (276)
+|+.+ +..||.+..|++++.|+..|.+.+..+.+.+..+..||.+++++..|.+++++||..||||| | |+|+||+
T Consensus 536 ~~~~~~~~~ip~~~~~~~~~~f~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~~~~~~e~il~~Gn~mN~g~~rg~a~~f~ 615 (833)
T KOG1922|consen 536 KFFFEELSGIPEFEERLQALSFRSKFSEEVTALKKKLETVEVASKELLESKKFLKILEIILAAGNRMNAGTNRGSAHGFK 615 (833)
T ss_pred HHHHHHhhcchHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccccccccchhh
Confidence 99987 66899999999999999999999999999999999999999999999999999999999999 6 6999999
Q ss_pred ccccccccccccCCCcchH-HHHHHHHHHhhCC---------------CccchhccccchHHhhcCCHHHHHHHHHHHHH
Q psy14168 181 IEYLTKVPEVKDTVHKHSL-LHHLCDLVLHQFP---------------QSTDLYSEIGPVTRASKVDFDELASSLRRMET 244 (276)
Q Consensus 181 L~sL~KL~d~Ks~d~k~tL-Lhylv~~~~~~~p---------------~ll~~~~eL~~v~~Aa~v~l~~l~~d~~~L~~ 244 (276)
|+++.||.|+|+.++++++ +||+.+.++...+ .+.+|.+||..|..|++++++.+.+++.++.+
T Consensus 616 l~~l~kl~d~ks~~~~~~~l~~~~~e~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~v~~aa~i~~~~l~~~~~~l~~ 695 (833)
T KOG1922|consen 616 LDALLKLSDVKSSDGKTTLLHFVVPEVVRSEGKRSVIDVEKSRRLGLPSLLKFLSDLSNVESAAKIDLEVLAEECSDLKK 695 (833)
T ss_pred HHHHhhhhhhhcccccchhhhhhHHHHHHhhccccchhhhhhhhccchhhhcccchhcccchhhccCHHHHHHHHHHHHH
Confidence 9999999999999998654 5555555555444 67899999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHhc-CCCcchhhhhhhh
Q psy14168 245 ECKASFDYLK-LIIKH-DGSATSVKVKTQG 272 (276)
Q Consensus 245 ~l~~~~~~l~-~~~~~-~~~~~~~~~~~~~ 272 (276)
++..+.+.+. ....+ ....++|..+|-.
T Consensus 696 ~~~~~~~~l~~~~~~~~~~~~~~f~~~~~~ 725 (833)
T KOG1922|consen 696 GLEKVKRELPTASKNESLPPGDPFSKVKKE 725 (833)
T ss_pred HHHHHHHHhhhhhcCCCCCccchhhhhhhh
Confidence 9999999996 33323 2244566666543
No 7
>KOG1925|consensus
Probab=97.54 E-value=8.5e-05 Score=71.93 Aligned_cols=71 Identities=61% Similarity=0.986 Sum_probs=65.9
Q ss_pred CCcccChhhhhHHhccCCChhHHHHHHHhhhcCCCcccccccchhhhccCHHHHHHHhhcCccCCChhhhh
Q psy14168 2 DSTVVNREGIEKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENLE 72 (276)
Q Consensus 2 ~~~~~~~~~iE~lf~~~~~~~~~~~i~~~raqN~~I~L~~~k~~~l~l~~~~~~~ail~~D~~~L~~e~l~ 72 (276)
|+++++++.|||++.++|+++|+.+|..+-+-|+.|.|+.+..+.+++|.|.-..+-+.++...++.+.-|
T Consensus 380 D~~~~~KDGIEK~L~MmPt~eE~qkIe~aqlaNPEipLG~AEQfLLtLSsI~~L~aRL~LWaFklDY~~~E 450 (817)
T KOG1925|consen 380 DEFAVSKDGIEKLLTMMPTEEERQKIEGAQLANPEIPLGPAEQFLLTLSSIGGLAARLQLWAFKLDYDSME 450 (817)
T ss_pred hhhhcchhhHHHHHHhCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHhhhHHHHHHHHHHhhhcccchhh
Confidence 78999999999999999999999999999999999999999999999999988888888888888877763
No 8
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=37.40 E-value=77 Score=23.42 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCcchh
Q psy14168 232 FDELASSLRRMETECKASFDYLKLIIK-----HDGSATSV 266 (276)
Q Consensus 232 l~~l~~d~~~L~~~l~~~~~~l~~~~~-----~~~~~~~~ 266 (276)
+++|..+-..|++.+++++.+|+.... .+.+++++
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk~diPe~kv 41 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKREFQIKEDIPEKKV 41 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCccccC
Confidence 456777888888888888888776443 35555543
No 9
>PF06769 Plasmid_Txe: Plasmid encoded toxin Txe; InterPro: IPR009614 The Axe-Txe pair in Enterococcus faecium (Streptococcus faecium) and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This family describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by match to IPR006442 from INTERPRO [].; GO: 0004519 endonuclease activity, 0006401 RNA catabolic process; PDB: 3OEI_L 2A6R_F 2A6Q_E 2A6S_D.
Probab=34.26 E-value=45 Score=24.82 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CCcchhhhhhhhccc
Q psy14168 241 RMETECKASFDYLKLIIKHD-GSATSVKVKTQGAWS 275 (276)
Q Consensus 241 ~L~~~l~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~ 275 (276)
++.+.++.+-+++..-|-.+ +.+.++|-.+.|+||
T Consensus 18 kl~kki~~li~~i~r~P~~G~gkpE~Lk~~~~g~~S 53 (80)
T PF06769_consen 18 KLLKKINKLIKEIKRNPFTGIGKPEPLKGDLSGYWS 53 (80)
T ss_dssp HHHHHHHHHHHHHHHSTTSSTT--EE-SGGGTTEEE
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCcccccCCCCeEE
Confidence 44455555555555433333 355799999999998
No 10
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=32.15 E-value=1.3e+02 Score=24.98 Aligned_cols=88 Identities=22% Similarity=0.235 Sum_probs=52.6
Q ss_pred HHHhccCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHhc---ccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14168 74 EKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSN---INELVARLKLW--AFKLDYENLEREVAEPLMDLKQGM 148 (276)
Q Consensus 74 ~~Ll~~~Pt~eE~~~l~~~~~~~~~~~L~~~E~F~~~l~~---ip~~~~Rl~~l--~f~~~f~~~~~~l~~~l~~~~~a~ 148 (276)
..+..+.|+-+|++.+.... +.| .=..-++|.-.+.+ .=+=-.+++.| .-+..|...++.+...+..+...-
T Consensus 41 sTl~~i~P~i~eI~~~~~el-d~~--~~ee~e~L~~~L~~g~~LV~k~sk~~r~n~~kk~~y~~Ki~~le~~l~~f~~v~ 117 (147)
T PF05659_consen 41 STLESIIPIIKEIDKLNVEL-DRP--RQEEIERLKELLEKGKELVEKCSKVRRWNLYKKPRYARKIEELEESLRRFIQVD 117 (147)
T ss_pred HHHHHhhhHHHHHHHHhhhc-CCc--hhHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHhHHHHHHHHHHHHHHHhcch
Confidence 56677889999988887653 222 11234444443321 11111223332 247778889999999999888876
Q ss_pred HHHhcChhHHHHHHHH
Q psy14168 149 DILRRNPTFKAILSTL 164 (276)
Q Consensus 149 ~~l~~S~~l~~lL~~v 164 (276)
-++.....+++++..+
T Consensus 118 ~q~~~~~D~~~l~~~~ 133 (147)
T PF05659_consen 118 LQLHQLRDIKELLAKM 133 (147)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6666655555555544
No 11
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=27.70 E-value=98 Score=26.18 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=16.0
Q ss_pred hhhhcC-CCcccceecccccc
Q psy14168 167 IGIFLN-GTEVKGFQIEYLTK 186 (276)
Q Consensus 167 iGN~lN-Gg~A~GFkL~sL~K 186 (276)
+|--|| .+.|+||+=+|..+
T Consensus 36 vg~~L~RTsAACGFRWNs~VR 56 (161)
T TIGR02894 36 VGRALNRTAAACGFRWNAYVR 56 (161)
T ss_pred HHHHHcccHHHhcchHHHHHH
Confidence 677888 46999999877765
No 12
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=25.29 E-value=63 Score=25.12 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=15.8
Q ss_pred ccchhccccchHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy14168 214 STDLYSEIGPVTRASKVDFDELASSLRRMETECKASFDYLK 254 (276)
Q Consensus 214 ll~~~~eL~~v~~Aa~v~l~~l~~d~~~L~~~l~~~~~~l~ 254 (276)
+..+..++.++|.+. ++..|.-.+.+++..++.+...++
T Consensus 51 l~~lE~~l~~LPt~~--dv~~L~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 51 LQALETKLEHLPTRD--DVHDLQLELAELRGELKELSARLQ 89 (106)
T ss_pred HHHHHHHHHhCCCHH--HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333344444443322 333444444444444444444443
No 13
>PF06780 Erp_C: Erp protein C-terminus; InterPro: IPR009618 This entry represents the C terminus of bacterial Erp proteins that seem to be specific to Borrelia burgdorferi (a causative agent of Lyme disease). Borrelia Erp proteins are particularly heterogeneous, which might enable them to interact with a wide variety of host components [].
Probab=24.95 E-value=1e+02 Score=25.59 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=24.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14168 229 KVDFDELASSLRRMETECKASFDYLKL 255 (276)
Q Consensus 229 ~v~l~~l~~d~~~L~~~l~~~~~~l~~ 255 (276)
.|.+.++..|+.+|+..|..+.+.|+.
T Consensus 106 ~V~vseIk~DLekLKs~LekvK~YL~d 132 (146)
T PF06780_consen 106 NVKVSEIKEDLEKLKSKLEKVKEYLKD 132 (146)
T ss_pred ceehHHHHhHHHHHHHHHHHHHHHHhc
Confidence 468899999999999999999998873
No 14
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=24.93 E-value=3.7e+02 Score=24.64 Aligned_cols=136 Identities=13% Similarity=0.083 Sum_probs=78.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHhhhhcC--CC---cccceecccccccc
Q psy14168 114 INELVARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLN--GT---EVKGFQIEYLTKVP 188 (276)
Q Consensus 114 ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~~~~a~~~l~~S~~l~~lL~~vL~iGN~lN--Gg---~A~GFkL~sL~KL~ 188 (276)
|..=+.|+..+....+|--.-..|+=+...+-.| +.-..+++|.+.--+=+.++ ++ +..+++++.=.|+.
T Consensus 43 i~tE~dRV~Fik~v~~~~~tKa~IKLN~KkLY~A-----DGyAVkELLKia~lLy~A~~~~~~~e~~~~~~~~~l~~k~~ 117 (267)
T PF10234_consen 43 IDTEQDRVFFIKSVAEFMATKARIKLNPKKLYQA-----DGYAVKELLKIASLLYSAMKSAPSDEEDDSLFKFDLSSKIQ 117 (267)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhheeecHHHHHHh-----hHHHHHHHHHHHHHHHHHHhCCCccccccchhhcccchhhh
Confidence 3344556666555555555545555555555444 22245666777766667777 22 34667777778899
Q ss_pred ccccC--------CCcchHHHHHHHHHHhhC--CCccchhccccchHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy14168 189 EVKDT--------VHKHSLLHHLCDLVLHQF--PQSTDLYSEIGPVTRASKVDFDELASSLRRMETECKASFDYLK 254 (276)
Q Consensus 189 d~Ks~--------d~k~tLLhylv~~~~~~~--p~ll~~~~eL~~v~~Aa~v~l~~l~~d~~~L~~~l~~~~~~l~ 254 (276)
|+|.. +.+.+|.+.|-+.+..+. ...+.-.-|+..++++-+-.+..+..++.++++.+..+..+-.
T Consensus 118 dlk~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~ 193 (267)
T PF10234_consen 118 DLKAARQLASEITQRGASLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEA 193 (267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99874 345677777776664321 1122334455666666666666666666666666665555433
No 15
>PF13907 DUF4208: Domain of unknown function (DUF4208)
Probab=24.76 E-value=32 Score=26.46 Aligned_cols=40 Identities=33% Similarity=0.398 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHhhhhcCC
Q psy14168 134 EREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNG 173 (276)
Q Consensus 134 ~~~l~~~l~~~~~a~~~l~~S~~l~~lL~~vL~iGN~lNG 173 (276)
+.-++..|..+..+-+.+-.....+.+=..++.||||++.
T Consensus 22 m~Pvkk~LkkL~~~~~~l~~~e~a~~lk~~L~~IG~~I~~ 61 (100)
T PF13907_consen 22 MRPVKKSLKKLKKPKKGLPRKERAKILKKELLKIGDFIDS 61 (100)
T ss_pred hHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444446778888899999999984
No 16
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=23.78 E-value=2.3e+02 Score=18.88 Aligned_cols=29 Identities=7% Similarity=0.119 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy14168 232 FDELASSLRRMETECKASFDYLKLIIKHD 260 (276)
Q Consensus 232 l~~l~~d~~~L~~~l~~~~~~l~~~~~~~ 260 (276)
++.|.+.+..|+..++.++..+..+.|-+
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa~ 29 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKKAE 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888887776643
No 17
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=21.50 E-value=69 Score=33.72 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=36.9
Q ss_pred cchHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------chhhhhhhhc
Q psy14168 222 GPVTRASKVDFDELASSLRRMETECKASFDYLKLIIKHDGSA-------TSVKVKTQGA 273 (276)
Q Consensus 222 ~~v~~Aa~v~l~~l~~d~~~L~~~l~~~~~~l~~~~~~~~~~-------~~~~~~~~~~ 273 (276)
..++++.+ +++.|..+...|+..+..++++++......++. |.+|.|||..
T Consensus 63 ~~~Pr~~~-ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a 120 (766)
T PF10191_consen 63 QRVPRVLR-EVDRLRQEAASLQEQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAA 120 (766)
T ss_pred HhccHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 34445444 788889999999999999999888765433322 5889999864
No 18
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=20.04 E-value=2.1e+02 Score=18.93 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhhhhhhcc
Q psy14168 232 FDELASSLRRMETECKASFDYLKLIIKHDGSATSVKVKTQGAW 274 (276)
Q Consensus 232 l~~l~~d~~~L~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 274 (276)
+.-+...+..|..++...++.|+..+.+- ..=.+=-+.+|+|
T Consensus 4 ~s~L~~qL~qL~aNL~~t~~~l~~~s~Q~-~~i~~LG~~~as~ 45 (45)
T PF08227_consen 4 YSHLASQLAQLQANLADTENLLEMTSIQA-NSIRKLGKIHASL 45 (45)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHhccC
Confidence 34577888889999999888888877774 1112233455555
Done!