RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14168
(276 letters)
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 154 bits (391), Expect = 3e-44
Identities = 44/193 (22%), Positives = 83/193 (43%), Gaps = 8/193 (4%)
Query: 59 LKLWAFKLDYENLEREKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELV 118
L++ L ++ L+ +P E+ + E L +E F + + + L
Sbjct: 110 LEVNEAVLTESMIQ--NLIKQMPEPEQLKMLSELKEEYD--DLAESEQFGVVMGTVPRLR 165
Query: 119 ARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGT---- 174
RL FKL + + ++ + + LR++ F ++L L +G ++N
Sbjct: 166 PRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNA 225
Query: 175 EVKGFQIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDE 234
GF I +L K+ + K K +LLH L +L + P+ E+ V +AS+V +
Sbjct: 226 GAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAEN 285
Query: 235 LASSLRRMETECK 247
L SL +M+ +
Sbjct: 286 LQKSLDQMKKQIA 298
Score = 66.4 bits (162), Expect = 1e-12
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 1 MDSTVVNREGIEKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLK 60
++ V+ I+ L+ +P E+ + E L +E F + + + L RL
Sbjct: 112 VNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYD--DLAESEQFGVVMGTVPRLRPRLN 169
Query: 61 LWAFKLDYENLERE 74
FKL +
Sbjct: 170 AILFKLQFSEQVEN 183
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 151 bits (384), Expect = 4e-44
Identities = 43/187 (22%), Positives = 80/187 (42%), Gaps = 8/187 (4%)
Query: 65 KLDYENLEREKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLW 124
L ++ L+ +P E+ + E L +E F + + + L RL
Sbjct: 45 VLTESMIQ--NLIKQMPEPEQLKMLSELKEEYD--DLAESEQFGVVMGTVPRLRPRLNAI 100
Query: 125 AFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGT----EVKGFQ 180
FKL + + ++ + + LR++ F ++L L +G ++N GF
Sbjct: 101 LFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFN 160
Query: 181 IEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDELASSLR 240
I +L K+ + K K +LLH L +L + P+ E+ V +AS+V + L SL
Sbjct: 161 ISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLD 220
Query: 241 RMETECK 247
+M+ +
Sbjct: 221 QMKKQIA 227
Score = 65.5 bits (160), Expect = 2e-12
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 1 MDSTVVNREGIEKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLK 60
++ V+ I+ L+ +P E+ + E L +E F + + + L RL
Sbjct: 41 VNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYD--DLAESEQFGVVMGTVPRLRPRLN 98
Query: 61 LWAFKLDYENLERE 74
FKL +
Sbjct: 99 AILFKLQFSEQVEN 112
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A
{Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B*
1ux4_A
Length = 411
Score = 153 bits (387), Expect = 5e-44
Identities = 38/206 (18%), Positives = 85/206 (41%), Gaps = 8/206 (3%)
Query: 65 KLDYENLEREKLLSMLPTDEEKCKILEAVSANPGV----PLGSAENFLLEL--SNINELV 118
K + + + P + + A P L A+ L+L + +
Sbjct: 118 KSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQRADQIYLQLMVNLESYWG 177
Query: 119 ARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGT--EV 176
+R++ YE E+ L + + + L+ + + + + +L++G F+N T +
Sbjct: 178 SRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSKQA 237
Query: 177 KGFQIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDELA 236
+GF++ L ++ +KDT + + L+++ +V +P D SE+ PV KV ++L
Sbjct: 238 QGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELEPVLDVVKVSIEQLV 297
Query: 237 SSLRRMETECKASFDYLKLIIKHDGS 262
+ + +++ D S
Sbjct: 298 NDCKDFSQSIVNVERSVEIGNLSDSS 323
Score = 49.1 bits (117), Expect = 6e-07
Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 20/94 (21%)
Query: 1 MDSTVVNREGIEKLLS--------------MLPTDEEKCKILEAVSANPGV----PLGSA 42
D + + + LS P + + A P L A
Sbjct: 102 CDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQRA 161
Query: 43 ENFLLEL--SNINELVARLKLWAFKLDYENLERE 74
+ L+L + + +R++ YE E
Sbjct: 162 DQIYLQLMVNLESYWGSRMRALTVVTSYEREYNE 195
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 145 bits (368), Expect = 1e-40
Identities = 48/191 (25%), Positives = 91/191 (47%), Gaps = 6/191 (3%)
Query: 74 EKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENL 133
E+LL +P + + E + + A+ FL E+S IN RL+ FK +
Sbjct: 134 EQLLKFVPEKSDIDLLEEH--KHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAER 191
Query: 134 EREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGT---EVKGFQIEYLTKVPEV 190
EV + ++ G + + R+ K +L +L+ G ++N GF+I L K+ +
Sbjct: 192 VAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQRGNAYGFKISSLNKIADT 251
Query: 191 KDTVHKH-SLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDELASSLRRMETECKAS 249
K ++ K+ +LLH+L +V +++P +L E+ + +A+KV+ EL + + + KA
Sbjct: 252 KSSIDKNITLLHYLITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAV 311
Query: 250 FDYLKLIIKHD 260
L+
Sbjct: 312 ETELEYQKSQP 322
Score = 57.2 bits (138), Expect = 1e-09
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 2 DSTVVNREGIEKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKL 61
+ + ++ +E+LL +P + + E + + A+ FL E+S IN RL+
Sbjct: 124 EQEDLPKDMLEQLLKFVPEKSDIDLLEEH--KHELDRMAKADRFLFEMSRINHYQQRLQS 181
Query: 62 WAFKLDYENLERE 74
FK + E
Sbjct: 182 LYFKKKFAERVAE 194
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 1e-08
Identities = 48/270 (17%), Positives = 86/270 (31%), Gaps = 84/270 (31%)
Query: 13 KLLSMLPTD--EEKCKILEAVSANPGVPLGSAENFLLELSNINELV----ARLKLWAFKL 66
K L P D E NP LS I E + A W +
Sbjct: 309 KYLDCRPQDLPREVLTT------NP-----------RRLSIIAESIRDGLATWDNWK-HV 350
Query: 67 DYENLER--EKLLSMLPTDE-----EKCKILEAVSANPGVPLGSAENFLLELSNINELVA 119
+ + L E L++L E ++ + SA+ +P LL L
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP-SAH--IPTI-----LLSL-------- 394
Query: 120 RLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGTEVKGF 179
+W ++ + +++ ++ + P K ++ SI
Sbjct: 395 ---IW------FDVIKSDVMVVVNKLHKYSLVEKQP--KESTISIPSI------------ 431
Query: 180 QIEYLTKVPEVKDTVHKHSLLHH----LCDLVLHQFPQSTD--LYSEIGPVTRASKVDFD 233
+E K+ + +H+ S++ H P D YS IG ++
Sbjct: 432 YLELKVKLEN-EYALHR-SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG--HHLKNIEHP 487
Query: 234 ELASSLRRMETECKASFDYLKLIIKHDGSA 263
E + R + F +L+ I+HD +A
Sbjct: 488 ERMTLFRMVFL----DFRFLEQKIRHDSTA 513
Score = 39.5 bits (91), Expect = 0.001
Identities = 35/228 (15%), Positives = 74/228 (32%), Gaps = 66/228 (28%)
Query: 63 AFKLDYENLEREKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLK 122
AF +++ + + + + + EE I+ + G+ F LS E+V +
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEEIDHIIMS----KDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 123 LWAFKLDYE-------------------------------------NLEREVAEPLMDLK 145
+++Y+ N+ R +P + L+
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL--QPYLKLR 141
Query: 146 QGMDILRRNPTF---------KAIL--STLLSIGIFLNGTEVKGFQIEYLTKVPEVKDTV 194
Q + LR K + LS + F+I +L +K+
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV----QCKMDFKIFWLN----LKNCN 193
Query: 195 HKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDELASSLRRM 242
++L L L L+Q + ++ + K+ + + LRR+
Sbjct: 194 SPETVLEMLQKL-LYQIDPN---WTSRSDHSSNIKLRIHSIQAELRRL 237
Score = 29.4 bits (65), Expect = 1.7
Identities = 16/65 (24%), Positives = 20/65 (30%), Gaps = 19/65 (29%)
Query: 195 HKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTR-ASKVDFDELASSLRRMETECKASFDYL 253
H H HH D + Y +I V A +FD CK D
Sbjct: 1 HHH---HHHMDFETGEHQYQ---YKDILSVFEDAFVDNFD------------CKDVQDMP 42
Query: 254 KLIIK 258
K I+
Sbjct: 43 KSILS 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 1e-05
Identities = 49/249 (19%), Positives = 82/249 (32%), Gaps = 64/249 (25%)
Query: 18 LPTD---------EEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDY 68
+PT E+ KIL + +A++ E + ELV + F L Y
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGF-----AADD---EPTTPAELVGK-----F-LGY 67
Query: 69 ENLEREKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKL 128
+ E + D+ +L L EN LE ++I+ L A+L
Sbjct: 68 VSSLVEP-SKVGQFDQ----VLNLC-------LTEFENCYLEGNDIHALAAKL-----LQ 110
Query: 129 DYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLS---------IGIFLNG---TE- 175
+ + + E + + + +R P K S L + IF G T+
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKR-PFDKKSNSALFRAVGEGNAQLVAIF-GGQGNTDD 168
Query: 176 -VKGFQIEYLTKVPEVKDTVHKHS-LLHHLCDLVLHQ---FPQSTDLYSEI-GPVTRASK 229
+ + Y T V D + + L L L F Q ++ + P
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD- 227
Query: 230 VDFDELASS 238
D+ L S
Sbjct: 228 KDY--LLSI 234
Score = 43.9 bits (103), Expect = 4e-05
Identities = 49/245 (20%), Positives = 82/245 (33%), Gaps = 62/245 (25%)
Query: 27 ILEAVSANPGVPLGSAENFLLELSNINELVARL------KLWAFKLDYENLEREKLLSML 80
+L L EN LE ++I+ L A+L L K +N ++++
Sbjct: 83 VLNLC-------LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 81 PTDE-EKCKILEAVSANPGVPL-------GSAENFLLELSNI----NELVARLKLWAFKL 128
P D+ + AV L G+ +++ EL ++ + LV L ++ +
Sbjct: 136 PFDKKSNSALFRAVGEG-NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 129 DYENLEREVAEPLMDLKQGMDILR--RNPTFKAILSTLLSI-----GIFLNGTEVKGFQI 181
L R + QG++IL NP+ LLSI I + Q+
Sbjct: 195 -LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV-------IQL 246
Query: 182 -EYLT--KV----P-EVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFD 233
Y+ K+ P E++ + H LV TD S F
Sbjct: 247 AHYVVTAKLLGFTPGELRS--YLKGATGHSQGLVTAVAIAETD-----------SWESFF 293
Query: 234 ELASS 238
Sbjct: 294 VSVRK 298
Score = 31.6 bits (71), Expect = 0.30
Identities = 20/132 (15%), Positives = 45/132 (34%), Gaps = 33/132 (25%)
Query: 142 MDLKQGMDILRRNPTFKAILSTLLSIGIFLNGTEVKGFQI-EYLTKVPEVKDTVH----- 195
M GMD+ + + + + + + GF I + + P T+H
Sbjct: 1631 M----GMDLYKTSKAAQDVWNR---ADNHF--KDTYGFSILDIVINNPVNL-TIHFGGEK 1680
Query: 196 ----KHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDELASSLRRMETE------ 245
+ + + + ++ ++ ++ EI + + F L T+
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS--TSYTFRSEKGLLSA--TQFTQPAL 1736
Query: 246 ---CKASFDYLK 254
KA+F+ LK
Sbjct: 1737 TLMEKAAFEDLK 1748
Score = 29.6 bits (66), Expect = 1.3
Identities = 35/206 (16%), Positives = 58/206 (28%), Gaps = 89/206 (43%)
Query: 6 VNREGIEKLLS-MLPTDEEKCK---------------ILEAVSANPGVP---------LG 40
+ +E E S +++ E + + +P LG
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG 1765
Query: 41 --SAENFLLELSNINELVARLKLWAFKLDYENL-----EREKLL-SMLPTDEEKCKILEA 92
+A L + A + E+L R + +P DE
Sbjct: 1766 EYAA------------LAS----LADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 93 VSANPG--VPLGSAE-------------NFLLELSNIN----------ELVARLKLWAFK 127
++ NPG S E +L+E+ N N +L A
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRA-------- 1861
Query: 128 LDYENLEREVAEPLMDLK-QGMDILR 152
LD V L +K Q +DI+
Sbjct: 1862 LD------TVTNVLNFIKLQKIDIIE 1881
Score = 28.5 bits (63), Expect = 2.7
Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 30/114 (26%)
Query: 5 VVNREGIEKLLSMLPTDEEKCKILEAVSANPG--VPLGSAE-------------NFLLEL 49
VV G + +P DE ++ NPG S E +L+E+
Sbjct: 1785 VVFYRG-MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI 1843
Query: 50 SNIN----------ELVARLKLWAFKLDY---ENLEREKLLSMLPTDEEKCKIL 90
N N +L A L L++ + ++ +L L +E + +
Sbjct: 1844 VNYNVENQQYVAAGDLRA-LDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.22
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 10/40 (25%)
Query: 110 ELSNINELVARLKLWAFKLDYENLEREVAEPLMDLKQGMD 149
E + +L A LKL+A D + P + +K M+
Sbjct: 18 EKQALKKLQASLKLYA--DD--------SAPALAIKATME 47
Score = 30.3 bits (67), Expect = 0.38
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 48 ELSNINELVARLKLWA 63
E + +L A LKL+A
Sbjct: 18 EKQALKKLQASLKLYA 33
Score = 29.1 bits (64), Expect = 1.0
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 9/34 (26%)
Query: 238 SLRRMETECKASFDYLKLIIKHDGSATSVKVKTQ 271
+L++++ LKL D SA ++ +K
Sbjct: 21 ALKKLQAS-------LKLY--ADDSAPALAIKAT 45
Score = 27.2 bits (59), Expect = 4.3
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 9/37 (24%)
Query: 8 REGIEKLLSMLPTDEEKCKILEAVSANPGVPL-GSAE 43
++ ++KL + L K+ SA P + + + E
Sbjct: 19 KQALKKLQASL-------KLYADDSA-PALAIKATME 47
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 27.5 bits (62), Expect = 5.1
Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 4 TVVNREGIEKLLSMLPTDEEKCKILEAVSAN 34
++ R+G+ ++ T +E+ K L S +
Sbjct: 268 AIIGRDGVLAETTLDLTTDEQEK-LLQ-SRD 296
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 27.5 bits (62), Expect = 5.2
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 4 TVVNREGIEKLLSMLPTDEEKCKILEAVSAN 34
VV R+G+ L T +E+ K LE SA
Sbjct: 265 RVVGRQGVLSTLHPKLTGDEQQK-LEQ-SAG 293
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like,
phosphoprotein, protein transport, endocytosis; 1.70A
{Saccharomyces cerevisiae} PDB: 3ggz_A
Length = 193
Score = 26.9 bits (59), Expect = 5.5
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 2 DSTVVNREGIEKLLSMLPTDEEKCKILEAVSANPGVPLGSAEN 44
D V + I+K +P +E L+ ++ VP EN
Sbjct: 147 DHIDVPEKIIKKCSPSVPKEELVDLYLKEIAKTYDVPYSKLEN 189
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis,
glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP:
c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Length = 456
Score = 27.2 bits (61), Expect = 5.9
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 22/73 (30%)
Query: 1 MDSTVVNREGIEKLLSMLPTDEE-----------KCKILEAVSANPGVPLGSAENFLLEL 49
++ V + G+ + + E+ + AV P GS+
Sbjct: 392 IEGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVG--PK---GSSTE----- 441
Query: 50 SNINELVARLKLW 62
N LV +
Sbjct: 442 -NFITLVDLVSKP 453
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 26.7 bits (60), Expect = 7.7
Identities = 3/21 (14%), Positives = 9/21 (42%)
Query: 4 TVVNREGIEKLLSMLPTDEEK 24
++ G+ + + EE+
Sbjct: 271 RILGAGGVAGTVYPSLSPEER 291
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 26.7 bits (60), Expect = 9.1
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 4 TVVNREGIEKLLSMLPTDEEK 24
T++NR+G+ ++ +D+E
Sbjct: 280 TLLNRQGVNNTINTPVSDKEL 300
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 26.7 bits (60), Expect = 9.7
Identities = 4/21 (19%), Positives = 12/21 (57%)
Query: 4 TVVNREGIEKLLSMLPTDEEK 24
++ + GI ++ + T +E+
Sbjct: 292 CILGQNGISDVVKVTLTPDEE 312
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 26.7 bits (60), Expect = 9.7
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 4 TVVNREGIEKLLSMLPTDEEK 24
V+NR GI +++ + D+EK
Sbjct: 277 AVINRNGIREVIEIELNDDEK 297
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.379
Gapped
Lambda K H
0.267 0.0826 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,079,849
Number of extensions: 238495
Number of successful extensions: 533
Number of sequences better than 10.0: 1
Number of HSP's gapped: 511
Number of HSP's successfully gapped: 55
Length of query: 276
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 184
Effective length of database: 4,133,061
Effective search space: 760483224
Effective search space used: 760483224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)