RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14168
         (276 letters)



>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 332

 Score =  125 bits (314), Expect = 2e-34
 Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 6/178 (3%)

Query: 74  EKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKLDYENL 133
           + L+  +P  E+   + E         L  +E F + +  +  L  RL    FKL +   
Sbjct: 47  QNLIKQMPEPEQLKMLSELKEEYD--DLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQ 104

Query: 134 EREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGTE----VKGFQIEYLTKVPE 189
              +   ++ +    + LR++  F ++L   L +G ++N         GF I +L K+ +
Sbjct: 105 VENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRD 164

Query: 190 VKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDELASSLRRMETECK 247
            K    K +LLH L +L  +  P+      E+  V +AS+V  + L  SL +M+ +  
Sbjct: 165 TKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIA 222


>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 411

 Score =  124 bits (311), Expect = 2e-33
 Identities = 38/206 (18%), Positives = 84/206 (40%), Gaps = 8/206 (3%)

Query: 65  KLDYENLEREKLLSMLPTDEEKCKILEAVSANPGV----PLGSAENFLLEL--SNINELV 118
           K +   +      +  P   +   +     A P       L  A+   L+L  +  +   
Sbjct: 118 KSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQRADQIYLQLMVNLESYWG 177

Query: 119 ARLKLWAFKLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGTE--V 176
           +R++       YE    E+   L  + + +  L+ +   + + + +L++G F+N T    
Sbjct: 178 SRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSKQA 237

Query: 177 KGFQIEYLTKVPEVKDTVHKHSLLHHLCDLVLHQFPQSTDLYSEIGPVTRASKVDFDELA 236
           +GF++  L ++  +KDT +  + L+++  +V   +P   D  SE+ PV    KV  ++L 
Sbjct: 238 QGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELEPVLDVVKVSIEQLV 297

Query: 237 SSLRRMETECKASFDYLKLIIKHDGS 262
           +  +            +++    D S
Sbjct: 298 NDCKDFSQSIVNVERSVEIGNLSDSS 323



 Score = 38.5 bits (89), Expect = 6e-04
 Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 20/94 (21%)

Query: 1   MDSTVVNREGIEKLLS--------------MLPTDEEKCKILEAVSANPGV----PLGSA 42
            D   +    + + LS                P   +   +     A P       L  A
Sbjct: 102 CDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQRA 161

Query: 43  ENFLLEL--SNINELVARLKLWAFKLDYENLERE 74
           +   L+L  +  +   +R++       YE    E
Sbjct: 162 DQIYLQLMVNLESYWGSRMRALTVVTSYEREYNE 195


>d1s05a_ a.24.3.2 (A:) Cytochrome c-556 {Rhodopseudomonas palustris
           [TaxId: 1076]}
          Length = 129

 Score = 26.8 bits (59), Expect = 1.4
 Identities = 11/90 (12%), Positives = 20/90 (22%), Gaps = 19/90 (21%)

Query: 157 FKAILSTLLSIGIFLNGTEVKGFQIEYLTKVPEVKDTVHKHSL-LHHLCDLVLHQFPQST 215
            K     ++ +G    G            + P  +  V             +   FP S 
Sbjct: 12  MKDNGRNMMVLGAIAKG------------EKPYDQAAVDAALKQFDETAKDLPKLFPDSV 59

Query: 216 DLYSEIGPVTRAS------KVDFDELASSL 239
                      +S      +  FD   +  
Sbjct: 60  KGLKPFDSKYSSSPKIWAERAKFDTEIADF 89


>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida
           albicans) [TaxId: 5476]}
          Length = 440

 Score = 26.7 bits (58), Expect = 3.2
 Identities = 26/179 (14%), Positives = 54/179 (30%), Gaps = 12/179 (6%)

Query: 7   NREGIEKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAFKL 66
           NR+ ++K+   L   ++   I +  +          + F    S + EL+ RL       
Sbjct: 197 NRKLLQKVFGKLMNTDDD-VIKQQTAKLLERTDREPQVFKDIDSRLPELIQRLNK----- 250

Query: 67  DYENLEREKLLSMLPTDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLWAF 126
            + N +       L  +       EA+      P       ++E    ++ V R      
Sbjct: 251 QFPN-DIGLFCGCLLLNHVGLNKGEAMFLQAKDPHAYISGDIIECMAASDNVVRAGFTPK 309

Query: 127 KLDYENLEREVAEPLMDLKQGMDILRRNPTFKAILSTLLSIGIFLNGTEVKGFQIEYLT 185
             D +NL   +              ++ P  +   S   ++   L    +  F +    
Sbjct: 310 FKDVKNLVEML-----TYSYESVEKQKMPLQEFPRSKGDAVKSVLYDPPIAEFSVLQTI 363


>d3pmga4 d.129.2.1 (A:421-561) Phosphoglucomutase {Rabbit
           (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 141

 Score = 24.7 bits (54), Expect = 8.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 129 DYENLEREVAEPLMD 143
           DYE +E E A  +M 
Sbjct: 8   DYEEVEAEGATKMMK 22


>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 350

 Score = 25.5 bits (55), Expect = 9.0
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 8/66 (12%)

Query: 20  TDEEKCKILEAVSANPGVPLGSAENFLLELSNINELVARLKLW---AFKLD---YENLE- 72
           TDE+K   L+  +     P+G      + ++       RL         L    Y + E 
Sbjct: 279 TDEQKRLFLQFTTGTDRAPVGGLGKLKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEK 338

Query: 73  -REKLL 77
            +E+LL
Sbjct: 339 LKERLL 344


>d1kfia4 d.129.2.1 (A:444-572) Exocytosis-sensitive phosphoprotein,
           pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
          Length = 129

 Score = 24.7 bits (54), Expect = 9.4
 Identities = 5/15 (33%), Positives = 9/15 (60%)

Query: 129 DYENLEREVAEPLMD 143
           DYE ++   A  +M+
Sbjct: 8   DYEQVDSAGANKMME 22


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.134    0.379 

Gapped
Lambda     K      H
   0.267   0.0689    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 973,847
Number of extensions: 44063
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 17
Length of query: 276
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 192
Effective length of database: 1,254,276
Effective search space: 240820992
Effective search space used: 240820992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.9 bits)