BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14169
         (97 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q2V2M9|FHOD3_HUMAN FH1/FH2 domain-containing protein 3 OS=Homo sapiens GN=FHOD3 PE=1
            SV=2
          Length = 1422

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/94 (60%), Positives = 73/94 (77%)

Query: 1    MSEFLSDTAQRIIVLSIVHRRVLHRFHRFCLWLGVPLHRVPLTKPQDLARIISEFALEYR 60
            MSEFL D A+RII+L IVHRR+++RFH F L++G P + +         RIISEFALEYR
Sbjct: 1195 MSEFLKDCAERIIILKIVHRRIINRFHSFLLFMGHPPYAIREVNINKFCRIISEFALEYR 1254

Query: 61   TTRERVIQTREKKASHRERNKTRGKMITECEELS 94
            TTRERV+Q ++K+A+HRERNKTRGKMIT+  + S
Sbjct: 1255 TTRERVLQQKQKRANHRERNKTRGKMITDSGKFS 1288


>sp|Q76LL6|FHOD3_MOUSE FH1/FH2 domain-containing protein 3 OS=Mus musculus GN=Fhod3 PE=1
            SV=1
          Length = 1578

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/94 (60%), Positives = 73/94 (77%)

Query: 1    MSEFLSDTAQRIIVLSIVHRRVLHRFHRFCLWLGVPLHRVPLTKPQDLARIISEFALEYR 60
            MSEFL D A+RII+L IVHRR+++RFH F L++G P + +         RIISEFALEYR
Sbjct: 1351 MSEFLKDCAERIIILKIVHRRIINRFHSFLLFMGHPPYAIREVNINKFCRIISEFALEYR 1410

Query: 61   TTRERVIQTREKKASHRERNKTRGKMITECEELS 94
            TTRERV+Q ++K+A+HRERNKTRGKMIT+  + S
Sbjct: 1411 TTRERVLQQKQKRANHRERNKTRGKMITDSGKFS 1444


>sp|Q9Y613|FHOD1_HUMAN FH1/FH2 domain-containing protein 1 OS=Homo sapiens GN=FHOD1 PE=1
            SV=3
          Length = 1164

 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 64/94 (68%)

Query: 1    MSEFLSDTAQRIIVLSIVHRRVLHRFHRFCLWLGVPLHRVPLTKPQDLARIISEFALEYR 60
            ++ FL   A+R+ +L IVHRRV +RFH F L+LG         +       + EFALEYR
Sbjct: 929  LTHFLDQCARRVAMLRIVHRRVCNRFHAFLLYLGYTPQAAREVRIMQFCHTLREFALEYR 988

Query: 61   TTRERVIQTREKKASHRERNKTRGKMITECEELS 94
            T RERV+Q ++K+A++RERNKTRG+MITE E+ S
Sbjct: 989  TCRERVLQQQQKQATYRERNKTRGRMITETEKFS 1022


>sp|Q6P9Q4|FHOD1_MOUSE FH1/FH2 domain-containing protein 1 OS=Mus musculus GN=Fhod1 PE=2
            SV=3
          Length = 1197

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 64/94 (68%)

Query: 1    MSEFLSDTAQRIIVLSIVHRRVLHRFHRFCLWLGVPLHRVPLTKPQDLARIISEFALEYR 60
            ++ FL+   +R+ +L +VHRRV +RFH F L+LG         +       + EFALEYR
Sbjct: 961  LTHFLAQCTRRVAMLRVVHRRVCNRFHAFLLYLGYTPQAARDVRIMQFCHTLREFALEYR 1020

Query: 61   TTRERVIQTREKKASHRERNKTRGKMITECEELS 94
            T RERV+Q ++K+A++RERNKTRG+MITE E+ S
Sbjct: 1021 TCRERVLQQQQKRATYRERNKTRGRMITETEKFS 1054


>sp|Q4JV11|RNH2_CORJK Ribonuclease HII OS=Corynebacterium jeikeium (strain K411) GN=rnhB
           PE=3 SV=1
          Length = 208

 Score = 29.6 bits (65), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 31/50 (62%), Gaps = 6/50 (12%)

Query: 34  GVPLHRVPLTKPQDLARIISEFALEYRTTRERVIQTREKK------ASHR 77
           G+P+  +P+ K   +A+ IS  ++  + +R+RV++T +++      ASH+
Sbjct: 118 GLPMPHLPVVKGDQMAKCISAASVLAKVSRDRVLRTLDEEFPGYGLASHK 167


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.137    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,925,554
Number of Sequences: 539616
Number of extensions: 1077624
Number of successful extensions: 3848
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3843
Number of HSP's gapped (non-prelim): 7
length of query: 97
length of database: 191,569,459
effective HSP length: 66
effective length of query: 31
effective length of database: 155,954,803
effective search space: 4834598893
effective search space used: 4834598893
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)