Query psy14169
Match_columns 97
No_of_seqs 54 out of 56
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 21:11:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14169.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14169hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eah_A Formin-like protein 3, 99.2 6.5E-11 2.2E-15 94.9 9.4 77 1-80 318-394 (402)
2 1ux5_A BNI1 protein; structura 98.9 2.2E-09 7.5E-14 85.0 8.0 77 1-79 335-411 (411)
3 1v9d_A Diaphanous protein homo 98.8 2.8E-08 9.7E-13 77.2 9.9 68 1-71 250-317 (340)
4 3obv_E Protein diaphanous homo 98.8 2.6E-08 9E-13 81.2 10.0 68 1-71 321-388 (457)
5 2j1d_G DAAM1, disheveled-assoc 98.8 2.4E-08 8.3E-13 81.2 9.5 65 1-68 333-397 (483)
6 1nwd_B GAD, glutamate decarbox 31.8 23 0.0008 19.1 1.5 22 51-72 6-27 (28)
7 2dko_A Caspase-3; low barrier 31.4 27 0.00091 24.1 2.2 33 25-57 45-77 (146)
8 1pyo_A Caspase-2; apoptosis, c 26.7 31 0.0011 24.3 1.9 32 26-57 63-94 (167)
9 1nd9_A Translation initiation 25.7 38 0.0013 18.1 1.8 22 52-73 5-26 (49)
10 2xvc_A ESCRT-III, SSO0910; cel 25.7 49 0.0017 20.7 2.4 25 52-76 28-52 (59)
11 1qtn_A Caspase-8; apoptosis, d 25.3 39 0.0013 23.7 2.2 33 25-57 59-91 (164)
12 3luq_A Sensor protein; PAS, hi 24.8 61 0.0021 17.5 2.6 22 28-49 31-52 (114)
13 2e01_A Cysteine proteinase 1; 24.7 94 0.0032 25.5 4.6 38 15-52 209-264 (457)
14 3p45_A Caspase-6; protease, hu 21.2 52 0.0018 23.7 2.2 33 25-57 73-105 (179)
No 1
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}
Probab=99.20 E-value=6.5e-11 Score=94.88 Aligned_cols=77 Identities=14% Similarity=0.280 Sum_probs=66.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCCCCCCChhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhh
Q psy14169 1 MSEFLSDTAQRIIVLSIVHRRVLHRFHRFCLWLGVPLHRVPLTKPQDLARIISEFALEYRTTRERVIQTREKKASHRERN 80 (97)
Q Consensus 1 l~~FL~d~aeRI~iL~~VhrRv~NRF~~fLL~lG~s~~~~~~~k~~~fck~iSEFALEYRTtrervlqq~~K~a~~ReRn 80 (97)
|.+||.+|.+++..|+..+.++.+.|++++.|||.+|.. ++|++||.++++|+.+|+.+++...+++++.+.++|+.
T Consensus 318 l~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFgedpk~---~~~~~fF~~~~~F~~~fk~A~~en~~r~~~e~~~~~~~ 394 (402)
T 4eah_A 318 LRNFLSTNEGKLDKLQRDAKTAEEAYNAVVRYFGESPKT---TPPSVFFPVFVRFIRSYKEAEQENEARKKQEEVMREKQ 394 (402)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTT---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 578999999999999999999999999999999999864 68999999999999999999999999999999999874
No 2
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=98.94 E-value=2.2e-09 Score=85.02 Aligned_cols=77 Identities=10% Similarity=0.110 Sum_probs=69.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCCCCCCChhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q psy14169 1 MSEFLSDTAQRIIVLSIVHRRVLHRFHRFCLWLGVPLHRVPLTKPQDLARIISEFALEYRTTRERVIQTREKKASHRER 79 (97)
Q Consensus 1 l~~FL~d~aeRI~iL~~VhrRv~NRF~~fLL~lG~s~~~~~~~k~~~fck~iSEFALEYRTtrervlqq~~K~a~~ReR 79 (97)
|.+|+.+|.+.+..|+.-+.++.+.|.+++.|||.++.. +++|++||.++++|+.+|+.+++...++++.++.+..|
T Consensus 335 ~~~fl~~a~~~~~~l~~~~~~~~~~~~~l~~yfged~~~--~~~~~~fF~~~~~F~~~f~~a~~en~~~~e~~~~~e~r 411 (411)
T 1ux5_A 335 TLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGD--KFAKISFFKKFADFINEYKKAQAQNLAAEEEERLYIKH 411 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 457999999999999999999999999999999999974 56899999999999999999999999888877765443
No 3
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=98.81 E-value=2.8e-08 Score=77.19 Aligned_cols=68 Identities=12% Similarity=0.188 Sum_probs=61.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCCCCCCChhHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy14169 1 MSEFLSDTAQRIIVLSIVHRRVLHRFHRFCLWLGVPLHRVPLTKPQDLARIISEFALEYRTTRERVIQTRE 71 (97)
Q Consensus 1 l~~FL~d~aeRI~iL~~VhrRv~NRF~~fLL~lG~s~~~~~~~k~~~fck~iSEFALEYRTtrervlqq~~ 71 (97)
|.+||.+|.+++..|+..|+.+.+.|..++.|||.+|. +++|++||.++++|.-.|..+.+...++++
T Consensus 250 m~~Fl~~a~~~~~~l~~~~~~~~~~~~~l~~yfged~~---~~~~~~fF~~~~~F~~~f~~a~~en~~r~e 317 (340)
T 1v9d_A 250 MTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPK---KLSVEEFFMDLHNFRNMFLQAVKENQKRRE 317 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTT---TSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999876 478999999999999999999887765443
No 4
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=98.80 E-value=2.6e-08 Score=81.19 Aligned_cols=68 Identities=12% Similarity=0.188 Sum_probs=61.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCCCCCCChhHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy14169 1 MSEFLSDTAQRIIVLSIVHRRVLHRFHRFCLWLGVPLHRVPLTKPQDLARIISEFALEYRTTRERVIQTRE 71 (97)
Q Consensus 1 l~~FL~d~aeRI~iL~~VhrRv~NRF~~fLL~lG~s~~~~~~~k~~~fck~iSEFALEYRTtrervlqq~~ 71 (97)
|++||.+|.+.+..|+..|..+.+.|.+++.|||..|. +++|++||.++++|.-.|..+.+...++++
T Consensus 321 m~~Fl~~A~~~~~~L~~~~~~~~~~~~~l~~yFgedp~---~~~~~eFF~~~~~F~~~fkkA~~eN~~r~e 388 (457)
T 3obv_E 321 MTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPK---KLSVEEFFMDLHNFRNMFLQAVKENQKRRE 388 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTT---TSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999875 578999999999999999998877665443
No 5
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=98.79 E-value=2.4e-08 Score=81.23 Aligned_cols=65 Identities=11% Similarity=0.160 Sum_probs=60.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCCCCCCChhHHHHHHHHHHHHHHhHHHHHHH
Q psy14169 1 MSEFLSDTAQRIIVLSIVHRRVLHRFHRFCLWLGVPLHRVPLTKPQDLARIISEFALEYRTTRERVIQ 68 (97)
Q Consensus 1 l~~FL~d~aeRI~iL~~VhrRv~NRF~~fLL~lG~s~~~~~~~k~~~fck~iSEFALEYRTtrervlq 68 (97)
|.+|+.+|.+.+..|+..+..+.+.|.+++.|||.++. +++|++||.++++|..+|+.+++.+.+
T Consensus 333 m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFGEd~~---~~~~~~fF~~~~~F~~~f~~A~~en~~ 397 (483)
T 2j1d_G 333 VSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAG---KIQPDEFFGIFDQFLQAVSEAKQENEN 397 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTT---SCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999986 468999999999999999999988765
No 6
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=31.83 E-value=23 Score=19.09 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q psy14169 51 IISEFALEYRTTRERVIQTREK 72 (97)
Q Consensus 51 ~iSEFALEYRTtrervlqq~~K 72 (97)
+=||.-||.=|...+.++.++|
T Consensus 6 tdsevqlemitawkkfveekkk 27 (28)
T 1nwd_B 6 TDSEVQLEMITAWKKFVEEKKK 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHHHHHHHHhhc
Confidence 3488999999999998887654
No 7
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=31.37 E-value=27 Score=24.07 Aligned_cols=33 Identities=3% Similarity=0.047 Sum_probs=28.9
Q ss_pred hHHHHHHHhcCCCCCCCCCChhHHHHHHHHHHH
Q psy14169 25 RFHRFCLWLGVPLHRVPLTKPQDLARIISEFAL 57 (97)
Q Consensus 25 RF~~fLL~lG~s~~~~~~~k~~~fck~iSEFAL 57 (97)
+....|-.|||.+..-.+.+..++.+.+.+||-
T Consensus 45 ~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~ 77 (146)
T 2dko_A 45 NLRETFRNLKYEVRNKNDLTREEIVELMRDVSK 77 (146)
T ss_dssp HHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHH
Confidence 345677889999999999999999999999974
No 8
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=26.71 E-value=31 Score=24.29 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCCCCCCCChhHHHHHHHHHHH
Q psy14169 26 FHRFCLWLGVPLHRVPLTKPQDLARIISEFAL 57 (97)
Q Consensus 26 F~~fLL~lG~s~~~~~~~k~~~fck~iSEFAL 57 (97)
-...|-.|||.+..-.+.+..++.+.+.+||=
T Consensus 63 L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 63 LVTLFKLLGYDVHVLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp HHHHHHHTTEEEEEEESCCHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCEEEEeeCCCHHHHHHHHHHhhh
Confidence 45678899999999999999999999999984
No 9
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=25.70 E-value=38 Score=18.13 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=18.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q psy14169 52 ISEFALEYRTTRERVIQTREKK 73 (97)
Q Consensus 52 iSEFALEYRTtrervlqq~~K~ 73 (97)
|.|+|-|..+.-+++++|.+..
T Consensus 5 v~~lAkel~~~~k~l~~~l~~~ 26 (49)
T 1nd9_A 5 IKTLAAERQTSVERLVQQFADA 26 (49)
T ss_dssp TTHHHHHHSSSHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHc
Confidence 6789999999999999998753
No 10
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=25.68 E-value=49 Score=20.71 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhh
Q psy14169 52 ISEFALEYRTTRERVIQTREKKASH 76 (97)
Q Consensus 52 iSEFALEYRTtrervlqq~~K~a~~ 76 (97)
|++||=+|+--++-|+.-.++.+++
T Consensus 28 I~~~a~kygV~kdeV~~~LrrLe~K 52 (59)
T 2xvc_A 28 IEHFSKVYGVEKQEVVKLLEALKNK 52 (59)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 7899999999999999888887764
No 11
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=25.33 E-value=39 Score=23.65 Aligned_cols=33 Identities=9% Similarity=0.036 Sum_probs=28.7
Q ss_pred hHHHHHHHhcCCCCCCCCCChhHHHHHHHHHHH
Q psy14169 25 RFHRFCLWLGVPLHRVPLTKPQDLARIISEFAL 57 (97)
Q Consensus 25 RF~~fLL~lG~s~~~~~~~k~~~fck~iSEFAL 57 (97)
+-...|-.|||.+..-.+.+..++.+.|.+||-
T Consensus 59 ~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~ 91 (164)
T 1qtn_A 59 ALTTTFEELHFEIKPHDDCTVEQIYEILKIYQL 91 (164)
T ss_dssp HHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHH
Confidence 345678899999999999999999999999973
No 12
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=24.82 E-value=61 Score=17.50 Aligned_cols=22 Identities=14% Similarity=-0.035 Sum_probs=17.5
Q ss_pred HHHHHhcCCCCCCCCCChhHHH
Q psy14169 28 RFCLWLGVPLHRVPLTKPQDLA 49 (97)
Q Consensus 28 ~fLL~lG~s~~~~~~~k~~~fc 49 (97)
++.-++|+++..+-..++.+++
T Consensus 31 ~~~~~~g~~~~~~~g~~~~~~~ 52 (114)
T 3luq_A 31 RWREDYGLGDGDILGMSHYDIF 52 (114)
T ss_dssp HHHHHTTCCSSCCTTCBHHHHC
T ss_pred HHHHHHCCCHHHHcCCcHHHHC
Confidence 5677899999988887776663
No 13
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A
Probab=24.67 E-value=94 Score=25.53 Aligned_cols=38 Identities=13% Similarity=0.346 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhHHH-HHHHhcCCCC----CC-------------CCCChhHHHHHH
Q psy14169 15 LSIVHRRVLHRFHR-FCLWLGVPLH----RV-------------PLTKPQDLARII 52 (97)
Q Consensus 15 L~~VhrRv~NRF~~-fLL~lG~s~~----~~-------------~~~k~~~fck~i 52 (97)
|.......+....+ +-++||.||. .. .+.+|.+|.+-.
T Consensus 209 l~~~~~~~l~~iy~il~~~LG~pP~~~~~~F~~~~~dkd~~~~~~~~TP~~F~~~~ 264 (457)
T 2e01_A 209 IVTLREQMQREIFRLMSLFMDIPPVQPNEQFTWEYVDKDKKIHTIKSTPLEFASKY 264 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCSSCTTSCEEEEEECTTSCEEEEEECHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEEEEcCCCCccCCCcChHHHHHHH
Confidence 45555555555443 4589999999 55 777999998543
No 14
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=21.15 E-value=52 Score=23.73 Aligned_cols=33 Identities=21% Similarity=0.137 Sum_probs=28.9
Q ss_pred hHHHHHHHhcCCCCCCCCCChhHHHHHHHHHHH
Q psy14169 25 RFHRFCLWLGVPLHRVPLTKPQDLARIISEFAL 57 (97)
Q Consensus 25 RF~~fLL~lG~s~~~~~~~k~~~fck~iSEFAL 57 (97)
+-...|-.|||.+..-.+.+..++.+.|.+||-
T Consensus 73 ~L~~~F~~LGF~V~~~~dlt~~em~~~l~~~~~ 105 (179)
T 3p45_A 73 NLTRRFSDLGFEVKCFNDLKAEELLLKIHEVST 105 (179)
T ss_dssp HHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHhh
Confidence 345678899999999999999999999999874
Done!