RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14169
(97 letters)
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 51.4 bits (123), Expect = 2e-09
Identities = 12/96 (12%), Positives = 33/96 (34%), Gaps = 3/96 (3%)
Query: 1 MSEFLSDTAQRIIVLSIVHRRVLHRFHRFCLWLGVPLHRVPLTKPQDLARIISEFALEYR 60
M+ F+ D ++ L ++H + + + ++ ++ + F +
Sbjct: 321 MTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLS---VEEFFMDLHNFRNMFL 377
Query: 61 TTRERVIQTREKKASHRERNKTRGKMITECEELSER 96
+ + RE + R + K E E ++
Sbjct: 378 QAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQK 413
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 49.8 bits (119), Expect = 9e-09
Identities = 10/85 (11%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 1 MSEFLSDTAQRIIVLSIVHRRVLHRFHRFCLWLGVPLHRVPLTKPQDLARIISEFALEYR 60
M+ F+ D ++ L ++H + + + ++ ++ + F +
Sbjct: 250 MTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLS---VEEFFMDLHNFRNMFL 306
Query: 61 TTRERVIQTREKKASHRERNKTRGK 85
+ + RE + R + K
Sbjct: 307 QAVKENQKRRETEEKMRRAKLAKEK 331
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 48.3 bits (115), Expect = 3e-08
Identities = 11/89 (12%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 1 MSEFLSDTAQRIIVLSIVHRRVLHRFHRFCLWLGVPLHRVPLTKPQDLARIISEFALEYR 60
+S+F++ + + + F + G ++ P + I +F
Sbjct: 333 VSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGKIQ---PDEFFGIFDQFLQAVS 389
Query: 61 TTRERVIQTREKKASHRERNKTRGKMITE 89
++ R+KK R + ++ +
Sbjct: 390 EAKQENENMRKKKEEEERRARMEAQLKEQ 418
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A
{Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B*
1ux4_A
Length = 411
Score = 42.6 bits (100), Expect = 3e-06
Identities = 8/78 (10%), Positives = 25/78 (32%), Gaps = 2/78 (2%)
Query: 1 MSEFLSDTAQRIIVLSIVHRRVLHRFHRFCLWLGVPLHRVPLTKPQDLARIISEFALEYR 60
L + ++ +L + + F G + ++F EY+
Sbjct: 335 TLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKF--AKISFFKKFADFINEYK 392
Query: 61 TTRERVIQTREKKASHRE 78
+ + + E++ + +
Sbjct: 393 KAQAQNLAAEEEERLYIK 410
>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase,
hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F}
PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*
Length = 267
Score = 28.4 bits (63), Expect = 0.29
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 38 HRVPLTKPQDLARIISEFALEYR 60
H ++KPQ L + A +Y+
Sbjct: 245 HVTMMSKPQQLFTTLLSIANKYK 267
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 28.2 bits (62), Expect = 0.34
Identities = 6/46 (13%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 38 HRVPLTKPQDLARIISEFALEYRTTRERVIQTREKKASHRERNKTR 83
H V + P + I+ + + + + + ER
Sbjct: 323 HLVNVEAPDLVIERINHH-IHEFVLTSPLQSSHIPQLTLEERAVMF 367
>3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold,
cyanogenesis; 2.50A {Arabidopsis thaliana}
Length = 258
Score = 28.0 bits (62), Expect = 0.36
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 38 HRVPLTKPQDLARIISEFALEY 59
H V L+KPQ L +S A +Y
Sbjct: 236 HMVMLSKPQKLFDSLSAIATDY 257
>2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid
indole alkaloids, PNAE, hydrolase, serine esterase; HET:
CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A*
Length = 264
Score = 28.0 bits (62), Expect = 0.38
Identities = 3/19 (15%), Positives = 12/19 (63%)
Query: 38 HRVPLTKPQDLARIISEFA 56
H L++P+++ + + + +
Sbjct: 244 HMGMLSQPREVCKCLLDIS 262
>1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein,
structural genomics, protein structure initiative, PSI;
HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB:
1y7i_A* 1y7h_A*
Length = 273
Score = 27.6 bits (61), Expect = 0.52
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 38 HRVPLTKPQDLARIISEFALEYRTT 62
H L +PQ L + E A +Y
Sbjct: 238 HMAMLCEPQKLCASLLEIAHKYNMA 262
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 27.6 bits (61), Expect = 0.72
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 5/34 (14%)
Query: 26 FHRFCLWLGVPLHRVPLTK-----PQDLARIISE 54
F + + G+ L R PL + I+
Sbjct: 205 FDKAAQYFGIKLVRTPLDADYRADVAAMREAITP 238
>3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase,
catalysis, protonation state, AB initio calculations,
substrate bindin; 1.05A {Hevea brasiliensis} SCOP:
c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A
3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A
7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A
1dwp_A ...
Length = 257
Score = 27.3 bits (60), Expect = 0.78
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 38 HRVPLTKPQDLARIISEFALEY 59
H++ LTK +++A I+ E A Y
Sbjct: 235 HKLQLTKTKEIAEILQEVADTY 256
>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8,
structural genomics, P protein structure initiative;
2.00A {Bacteroides vulgatus atcc 8482}
Length = 310
Score = 27.0 bits (60), Expect = 0.85
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 14/43 (32%)
Query: 14 VLSIVHRRVLHRFHRFCLWLGVPLHRVPLTKPQDLARIISEFA 56
+ +I + R+ H LGVPL + R I+E A
Sbjct: 157 IRAISNYRIAHELLI----LGVPL----------IPRFITEMA 185
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding
proline in AN alpha-helix, endocytosis/exocytosis
complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Length = 97
Score = 26.4 bits (57), Expect = 0.96
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 44 KPQDLARIISEFALEYRTTRERVIQTREKKASHRERNKTRGKMITECEELSER 96
K ++L+ +I FA + R + + K+ S R K ++I C + ++
Sbjct: 4 KTKELSNLIETFAEQSRVLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDK 56
>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix,
OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A
Length = 313
Score = 26.7 bits (59), Expect = 1.1
Identities = 5/43 (11%), Positives = 11/43 (25%), Gaps = 14/43 (32%)
Query: 14 VLSIVHRRVLHRFHRFCLWLGVPLHRVPLTKPQDLARIISEFA 56
+++ R+ H + G R + E
Sbjct: 130 FQAVIVYRIAHVLYE----CGERY----------YCREMMESV 158
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 26.5 bits (59), Expect = 1.5
Identities = 2/34 (5%), Positives = 11/34 (32%), Gaps = 5/34 (14%)
Query: 26 FHRFCLWLGVPLHRVPLTK-----PQDLARIISE 54
F + + + P+ + + + + +
Sbjct: 136 FEKGREMMDLEYIYAPIKEDYTIDEKFVKDAVED 169
>2mev_1 Mengo virus coat protein (subunit VP1); cardio picornavirus coat
protein, icosahedral virus; 3.00A {Mengo virus} SCOP:
b.121.4.1 PDB: 1mec_1
Length = 277
Score = 25.4 bits (55), Expect = 3.5
Identities = 5/33 (15%), Positives = 9/33 (27%)
Query: 21 RVLHRFHRFCLWLGVPLHRVPLTKPQDLARIIS 53
V R+ ++ P P D +
Sbjct: 237 TVYLRYKNMRVFCPRPTVFFPWPTSGDKIDMTP 269
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit;
carboxyltransferase, beta-BETA-alpha superhelix,
ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB:
3u9s_B* 3u9t_B
Length = 555
Score = 24.9 bits (55), Expect = 6.3
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 58 EYRTTRERVIQTREKKASHRERNKTRGKM 86
RT R+ + A + R+ RGK+
Sbjct: 48 ALRTLLGRIHEGGGSAA--QARHSARGKL 74
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 24.6 bits (53), Expect = 7.4
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 56 ALEYRTTRERVIQTREKKASHRERNKTRGKMITECEELS 94
A Y ++ + + + E KT+ K I + +
Sbjct: 640 AKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNME 678
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.137 0.403
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,463,217
Number of extensions: 77626
Number of successful extensions: 276
Number of sequences better than 10.0: 1
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 31
Length of query: 97
Length of database: 6,701,793
Length adjustment: 63
Effective length of query: 34
Effective length of database: 4,942,770
Effective search space: 168054180
Effective search space used: 168054180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.8 bits)