RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14169
         (97 letters)



>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 411

 Score = 42.0 bits (98), Expect = 2e-06
 Identities = 8/74 (10%), Positives = 23/74 (31%), Gaps = 2/74 (2%)

Query: 1   MSEFLSDTAQRIIVLSIVHRRVLHRFHRFCLWLGVPLHRVPLTKPQDLARIISEFALEYR 60
               L +  ++  +L    +  +  F       G               +  ++F  EY+
Sbjct: 335 TLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGED--SGDKFAKISFFKKFADFINEYK 392

Query: 61  TTRERVIQTREKKA 74
             + + +   E++ 
Sbjct: 393 KAQAQNLAAEEEER 406


>d2mev1_ b.121.4.1 (1:) Mengo encephalomyocarditis virus coat
           proteins {Mengovirus [TaxId: 12107]}
          Length = 268

 Score = 26.9 bits (59), Expect = 0.35
 Identities = 5/31 (16%), Positives = 9/31 (29%)

Query: 21  RVLHRFHRFCLWLGVPLHRVPLTKPQDLARI 51
            V  R+    ++   P    P     D   +
Sbjct: 237 TVYLRYKNMRVFCPRPTVFFPWPTSGDKIDM 267


>d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree
           (Hevea brasiliensis) [TaxId: 3981]}
          Length = 256

 Score = 26.8 bits (57), Expect = 0.41
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 38  HRVPLTKPQDLARIISEFALEY 59
           H++ LTK +++A I+ E A  Y
Sbjct: 234 HKLQLTKTKEIAEILQEVADTY 255


>d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2)
           {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}
          Length = 258

 Score = 25.3 bits (53), Expect = 1.4
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 38  HRVPLTKPQDLARIISEFALEY 59
           H   L +PQ L   + E A +Y
Sbjct: 236 HMAMLCEPQKLCASLLEIAHKY 257


>d2i0ka1 d.58.32.3 (A:274-613) Cholesterol oxidase {Brevibacterium
           sterolicum [TaxId: 1702]}
          Length = 340

 Score = 24.9 bits (54), Expect = 1.8
 Identities = 4/20 (20%), Positives = 11/20 (55%)

Query: 42  LTKPQDLARIISEFALEYRT 61
           +T   ++A +I++F   +  
Sbjct: 165 VTSRANIATVINDFTEWFHE 184


>d1hs7a_ a.47.2.1 (A:) Vam3p N-terminal domain {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 97

 Score = 24.2 bits (52), Expect = 2.3
 Identities = 12/53 (22%), Positives = 25/53 (47%)

Query: 44 KPQDLARIISEFALEYRTTRERVIQTREKKASHRERNKTRGKMITECEELSER 96
          K ++L+ +I  FA + R   +   +   K+ S   R K   ++I  C  + ++
Sbjct: 4  KTKELSNLIETFAEQSRVLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDK 56


>d1tme1_ b.121.4.1 (1:) Theilovirus capsid proteins {Theiler's
           murine encephalomyelitis virus, strain da [TaxId:
           12124]}
          Length = 256

 Score = 23.7 bits (51), Expect = 4.4
 Identities = 4/21 (19%), Positives = 8/21 (38%)

Query: 21  RVLHRFHRFCLWLGVPLHRVP 41
            V  R+ +  ++   P    P
Sbjct: 233 SVRIRYKKMKVFCPRPTLFFP 253


>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3
          {Escherichia coli [TaxId: 562]}
          Length = 80

 Score = 23.1 bits (50), Expect = 4.7
 Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 4/56 (7%)

Query: 28 RFCLWLGVPLHRVPLTKPQD----LARIISEFALEYRTTRERVIQTREKKASHRER 79
           + L L +   R+     +     L  I      ++R T  + +       S + +
Sbjct: 10 NWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAK 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0359    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 346,987
Number of extensions: 14160
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 16
Length of query: 97
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 38
Effective length of database: 1,597,526
Effective search space: 60705988
Effective search space used: 60705988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.9 bits)