BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1417
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 185 bits (470), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 87/100 (87%), Positives = 94/100 (94%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKSSLL+RF+DNTFSGSYITTIGVDFKIRT+++NGEKVKLQIWDTAGQERFRTITSTY
Sbjct: 19 GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTY 78
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
YRGTHGVIVVYDVTS E+F NVKRWLHEI NC+ V RIL
Sbjct: 79 YRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRIL 118
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/113 (63%), Positives = 94/113 (83%), Gaps = 2/113 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 18 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGLNQRSI 161
YRG HG+IVVYDVT E+F NVK+WL EI+ E VN++L G++ L + +
Sbjct: 78 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTKKV 130
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 152 bits (383), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 19 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 78
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YRG HG+IVVYDVT E++ANVK+WL EI+ E VN++L
Sbjct: 79 YRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLL 119
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 19 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 78
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YRG HG+IVVYDVT E++ANVK+WL EI+ E VN++L
Sbjct: 79 YRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLL 119
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 150 bits (380), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 88/101 (87%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 16 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 75
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YRG HG+IVVYDVT E+F NVK+WL EI+ E VN++L
Sbjct: 76 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 116
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 88/101 (87%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 16 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 75
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YRG HG+IVVYDVT E+F NVK+WL EI+ E VN++L
Sbjct: 76 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 116
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 150 bits (379), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 88/101 (87%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 9 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 68
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL 150
YRG HG+IVVYDVT E+F NVK+WL EI+ E VN++L
Sbjct: 69 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 109
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 150 bits (379), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 88/101 (87%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 26 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 85
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL 150
YRG HG+IVVYDVT E+F NVK+WL EI+ E VN++L
Sbjct: 86 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 126
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 150 bits (378), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 88/101 (87%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 35 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 94
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YRG HG+IVVYDVT E+F NVK+WL EI+ E VN++L
Sbjct: 95 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 135
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 149 bits (376), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 88/101 (87%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 43 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 102
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YRG HG+IVVYDVT E+F NVK+WL EI+ E VN++L
Sbjct: 103 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 143
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/101 (68%), Positives = 88/101 (87%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGK+ LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 26 GVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 85
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YRG HG+IVVYDVT E+F NVK+WL EI+ E VN++L
Sbjct: 86 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 126
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 88/101 (87%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 8 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 67
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YRG HG+IVVYDVT E+F NVK+WL EI+ E VN++L
Sbjct: 68 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 108
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 144 bits (363), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/121 (55%), Positives = 92/121 (76%), Gaps = 2/121 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RFSD+T++ YI+TIGVDFKI+T++++G+ VKLQIWDTAGQERFRTITS+Y
Sbjct: 31 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSY 90
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN--NCEVVNRILGLRLGLNQRSIDEVNLCH 168
YRG+HG+I+VYDVT E+F VK WL EI+ V+ ++G + L + + E ++
Sbjct: 91 YRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAK 150
Query: 169 R 169
Sbjct: 151 E 151
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 144 bits (362), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 80/90 (88%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RFSD+T++ YI+TIGVDFKI+T++++G+ VKLQIWDTAGQERFRTITS+Y
Sbjct: 18 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIE 140
YRG+HG+I+VYDVT E+F VK WL EI+
Sbjct: 78 YRGSHGIIIVYDVTDQESFNGVKMWLQEID 107
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 144 bits (362), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 67/121 (55%), Positives = 92/121 (76%), Gaps = 2/121 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RFSD+T++ YI+TIGVDFKI+T++++G+ VKLQIWDTAGQERFRTITS+Y
Sbjct: 18 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN--NCEVVNRILGLRLGLNQRSIDEVNLCH 168
YRG+HG+I+VYDVT E+F VK WL EI+ V+ ++G + L + + E ++
Sbjct: 78 YRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAK 137
Query: 169 R 169
Sbjct: 138 E 138
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 143 bits (360), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 67/101 (66%), Positives = 85/101 (84%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI + + VKLQIWDTAGQERFRTITS+Y
Sbjct: 19 GVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTITSSY 78
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YRG HG+I+VYDVT ++F NVK+W+ EI+ E VN++L
Sbjct: 79 YRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLL 119
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 137 bits (345), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 64/115 (55%), Positives = 84/115 (73%), Gaps = 3/115 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKSSLL+RF+D+TF TIGVDFK++TI V+G K KL IWDTAGQERFRT+T +Y
Sbjct: 25 GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY 84
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC---EVVNRILGLRLGLNQRSID 162
YRG GVI+VYDVT +TF + WL+E+E C ++VN ++G ++ R +D
Sbjct: 85 YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKENREVD 139
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 58/89 (65%), Positives = 75/89 (84%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF ++ F+ S+ITTIG+DFKI+T+D+NG+KVKLQIWDTAGQERFRTIT+ Y
Sbjct: 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAY 72
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEI 139
YRG G+I+VYD+T TF N+K+W +
Sbjct: 73 YRGAMGIILVYDITDERTFTNIKQWFKTV 101
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 58/89 (65%), Positives = 75/89 (84%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF ++ F+ S+ITTIG+DFKI+T+D+NG+KVKLQ+WDTAGQERFRTIT+ Y
Sbjct: 17 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY 76
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEI 139
YRG G+I+VYDVT TF N+K+W +
Sbjct: 77 YRGAMGIILVYDVTDERTFTNIKQWFKTV 105
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 58/89 (65%), Positives = 75/89 (84%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF ++ F+ S+ITTIG+DFKI+T+D+NG+KVKLQIWDTAGQERFRTIT+ Y
Sbjct: 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAY 72
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEI 139
YRG G+I+VYD+T TF N+K+W +
Sbjct: 73 YRGAXGIILVYDITDERTFTNIKQWFKTV 101
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 81/106 (76%)
Query: 34 NGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQ 93
NG ++ K + GVGKS LL+RF ++ F+ S+ITTIG+DFKI+T+D+NG+KVKLQ
Sbjct: 13 NGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQ 72
Query: 94 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
+WDTAGQERFRTIT+ YYRG G+I+VYDVT TF N+K+W +
Sbjct: 73 LWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV 118
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 58/89 (65%), Positives = 75/89 (84%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF ++ F+ S+ITTIG+DFKI+T+D+NG+KVKLQ+WDTAGQERFRTIT+ Y
Sbjct: 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY 72
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEI 139
YRG G+I+VYDVT TF N+K+W +
Sbjct: 73 YRGAXGIILVYDVTDERTFTNIKQWFKTV 101
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 88/111 (79%), Gaps = 2/111 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGK+ +L RFS++ F+ ++I+TIG+DFKIRTI+++G+++KLQIWDTAGQERFRTIT+ Y
Sbjct: 18 GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN--NCEVVNRILGLRLGLNQR 159
YRG G+++VYD+T+ ++F N++ W+ IE + +V ILG + +N +
Sbjct: 78 YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 88/111 (79%), Gaps = 2/111 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGK+ +L RFS++ F+ ++I+TIG+DFKIRTI+++G+++KLQIWDTAGQERFRTIT+ Y
Sbjct: 16 GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 75
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN--NCEVVNRILGLRLGLNQR 159
YRG G+++VYD+T+ ++F N++ W+ IE + +V ILG + +N +
Sbjct: 76 YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 120 bits (300), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 73/91 (80%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGK+SL+ RF+D+TF + +T+GVDFKI+T+++ G+K++LQIWDTAGQERF +ITS Y
Sbjct: 36 GVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAY 95
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN 141
YR G+I+VYD+T ETF ++ +W+ I+
Sbjct: 96 YRSAKGIILVYDITKKETFDDLPKWMKMIDK 126
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 117 bits (293), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 73/95 (76%), Gaps = 1/95 (1%)
Query: 51 GVGKSSLLIRFSDNTF-SGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITST 109
GVGK+ LL+RF D F +G++I+T+G+DF+ + +DV+G KVKLQ+WDTAGQERFR++T
Sbjct: 20 GVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHA 79
Query: 110 YYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE 144
YYR H ++++YDVT+ +F N++ WL EI +
Sbjct: 80 YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ 114
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 116 bits (290), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 77/112 (68%), Gaps = 2/112 (1%)
Query: 50 VGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITST 109
GVGK+ L+ RF+ F TIGVDF I+T+++NGEKVKLQIWDTAGQERFR+IT +
Sbjct: 35 AGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQS 94
Query: 110 YYRGTHGVIVVYDVTSGETFANVKRWLHEIENNC--EVVNRILGLRLGLNQR 159
YYR + +I+ YD+T E+F + WL EIE +V+ ++G ++ L +R
Sbjct: 95 YYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 112 bits (281), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 78/99 (78%), Gaps = 4/99 (4%)
Query: 52 VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYY 111
VGK+S L R++D+TF+ ++++T+G+DFK++T+ + ++VKLQIWDTAGQER+RTIT+ YY
Sbjct: 34 VGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYY 93
Query: 112 RGTHGVIVVYDVTSGETFANVKRWLHEIE----NNCEVV 146
RG G I++YD+T+ E+F V+ W +I+ +N +V+
Sbjct: 94 RGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVI 132
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 73/90 (81%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+S L R++D++F+ ++++T+G+DFK++TI N +++KLQIWDTAGQER+RTIT+ Y
Sbjct: 15 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAY 74
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIE 140
YRG G I++YD+T+ E+F V+ W +I+
Sbjct: 75 YRGAMGFILMYDITNEESFNAVQDWSTQIK 104
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 67/94 (71%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+LL RF+ N F+ +TIGV+F RT+++ G+++K QIWDTAGQER+R ITS Y
Sbjct: 23 GVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAY 82
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE 144
YRG G ++VYD++ ++ N WL E+ N +
Sbjct: 83 YRGAVGALIVYDISKSSSYENCNHWLSELRENAD 116
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 82/107 (76%), Gaps = 7/107 (6%)
Query: 47 LQLVG---VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERF 103
L L+G VGK+S L R++D++F+ ++++T+G+DFK++T+ + +++KLQIWDTAGQER+
Sbjct: 25 LLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERY 84
Query: 104 RTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIE----NNCEVV 146
RTIT+ YYRG G +++YD+ + E+FA V+ W +I+ +N +V+
Sbjct: 85 RTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVI 131
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 69/94 (73%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+LL RF+ N F+ +TIGV+F R+I V+G+ +K QIWDTAGQER+R ITS Y
Sbjct: 39 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAY 98
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE 144
YRG G ++VYD+ T+ NV+RWL E+ ++ +
Sbjct: 99 YRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 132
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 69/94 (73%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+LL RF+ N F+ +TIGV+F R+I V+G+ +K QIWDTAGQER+R ITS Y
Sbjct: 30 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAY 89
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE 144
YRG G ++VYD+ T+ NV+RWL E+ ++ +
Sbjct: 90 YRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 123
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 69/94 (73%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+LL RF+ N F+ +TIGV+F R+I V+G+ +K QIWDTAGQER+R ITS Y
Sbjct: 15 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAY 74
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE 144
YRG G ++VYD+ T+ NV+RWL E+ ++ +
Sbjct: 75 YRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 108
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 76/99 (76%), Gaps = 4/99 (4%)
Query: 52 VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYY 111
VGK+S L R++D++F+ ++++T+G+DFK++TI N +++KLQIWDTAG ER+RTIT+ YY
Sbjct: 19 VGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYY 78
Query: 112 RGTHGVIVVYDVTSGETFANVKRWLHEIE----NNCEVV 146
RG G I+ YD+T+ E+F V+ W +I+ +N +V+
Sbjct: 79 RGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVL 117
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 88/148 (59%), Gaps = 4/148 (2%)
Query: 27 IPTGRGKNGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVN 86
+P G G + F K + VGK+ ++ RF FS +TIGVDF ++T+++
Sbjct: 15 VPRGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ 74
Query: 87 GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIEN--NCE 144
G++VKLQIWDTAGQERFRTIT +YYR +G I+ YD+T +F +V W+ ++
Sbjct: 75 GKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN 134
Query: 145 VVNRILGLRLGLNQRSIDEVNLCHRGSV 172
+V ++G + L++ + EV+L S+
Sbjct: 135 IVQLLIGNKSDLSE--LREVSLAEAQSL 160
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 68/94 (72%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+LL RF+ N F+ +TIGV+F R+I V+G+ +K QIWDTAG ER+R ITS Y
Sbjct: 39 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 98
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE 144
YRG G ++VYD+ T+ NV+RWL E+ ++ +
Sbjct: 99 YRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 132
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 78/118 (66%), Gaps = 7/118 (5%)
Query: 27 IPTGRGKNGPTHIFSQKSSFLQLVG---VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTI 83
+P G K+ SQK+ + L G VGKSS L+R N F + T+GVDF+++T+
Sbjct: 15 VPRGSAKS----FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTL 70
Query: 84 DVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIEN 141
V+GE+ LQ+WDTAGQERFR+I +Y+R GV+++YDVT ++F N++ W+ IE+
Sbjct: 71 IVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIED 128
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 68/94 (72%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+LL RF+ N F+ +TIGV+F R+I V+G+ +K QIWDTAG ER+R ITS Y
Sbjct: 18 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE 144
YRG G ++VYD+ T+ NV+RWL E+ ++ +
Sbjct: 78 YRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 111
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 68/94 (72%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+LL RF+ N F+ +TIGV+F R+I V+G+ +K QIWDTAG ER+R ITS Y
Sbjct: 21 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 80
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE 144
YRG G ++VYD+ T+ NV+RWL E+ ++ +
Sbjct: 81 YRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 114
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 68/94 (72%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+LL RF+ N F+ +TIGV+F R+I V+G+ +K QIWDTAG ER+R ITS Y
Sbjct: 15 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 74
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE 144
YRG G ++VYD+ T+ NV+RWL E+ ++ +
Sbjct: 75 YRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 108
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 106 bits (265), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGK++LL RF+ N FS TTIGV+F RT+ + VK QIWDTAG ER+R ITS Y
Sbjct: 35 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAY 94
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE--VVNRILGLRLGLNQ 158
YRG G ++V+D+T +T+A V+RWL E+ ++ E +V ++G + L+Q
Sbjct: 95 YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ 144
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 106 bits (265), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGK++LL RF+ N FS TTIGV+F RT+ + VK QIWDTAG ER+R ITS Y
Sbjct: 20 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAY 79
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE--VVNRILGLRLGLNQ 158
YRG G ++V+D+T +T+A V+RWL E+ ++ E +V ++G + L+Q
Sbjct: 80 YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ 129
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 81/130 (62%), Gaps = 2/130 (1%)
Query: 32 GKNGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVK 91
G G + + K + GVGKS LL++F+D F + TIGV+F R I ++G+++K
Sbjct: 1 GPLGSAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIK 60
Query: 92 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI--ENNCEVVNRI 149
LQIWDTAGQE FR+IT +YYRG G ++VYD+T +TF ++ WL + +N +V +
Sbjct: 61 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIML 120
Query: 150 LGLRLGLNQR 159
+G + L R
Sbjct: 121 IGNKSDLESR 130
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 66/88 (75%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL++F+D F + TIGV+F R ++++G+++KLQIWDTAGQE FR+IT +Y
Sbjct: 31 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSY 90
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHE 138
YRG G ++VYD+T ETF ++ WL +
Sbjct: 91 YRGAAGALLVYDITRRETFNHLTSWLED 118
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 65/94 (69%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+LL RF+ + F+ +TIGV+F RTI+V +K+K QIWDTAG ER+R ITS Y
Sbjct: 20 GVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYRAITSAY 79
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE 144
YRG G ++VYD++ ++ N WL E+ N +
Sbjct: 80 YRGAVGALIVYDISKSSSYENCNHWLTELRENAD 113
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 68/95 (71%), Gaps = 1/95 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKV-KLQIWDTAGQERFRTITST 109
GVGKS+LL RF+ + F+ +TIGV+F ++I + K+ K QIWDTAGQER+R ITS
Sbjct: 17 GVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQERYRAITSA 76
Query: 110 YYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE 144
YYRG G ++VYD+T +F N+++WL E+ +N +
Sbjct: 77 YYRGAVGALLVYDITKKNSFENIEKWLKELRDNAD 111
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/92 (51%), Positives = 65/92 (70%)
Query: 50 VGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITST 109
+GVGKS LL +F++ F TIGV+F R I+V+G+K+KLQIWDTAGQERFR +T +
Sbjct: 24 MGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRS 83
Query: 110 YYRGTHGVIVVYDVTSGETFANVKRWLHEIEN 141
YYRG G ++VYD+T T+ ++ WL + N
Sbjct: 84 YYRGAAGALMVYDITRRSTYNHLSSWLTDARN 115
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 74/118 (62%), Gaps = 5/118 (4%)
Query: 27 IPTGRGKNGP---THIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTI 83
+P G P ++IF K + +GVGKS LL +F++ F TIGV+F R I
Sbjct: 15 VPRGSMATAPYNYSYIF--KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRII 72
Query: 84 DVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIEN 141
+V+G+K+KLQIWDTAGQ RFR +T +YYRG G ++VYD+T T+ ++ WL + N
Sbjct: 73 EVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN 130
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 85/127 (66%), Gaps = 14/127 (11%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGE----------KVKLQIWDTAGQ 100
GVGK++ L R++DN F+ +ITT+G+DF+ + + N + KV LQ+WDTAGQ
Sbjct: 35 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ 94
Query: 101 ERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGL- 156
ERFR++T+ ++R G ++++D+TS ++F NV+ W+ +++ N CE + +L G + L
Sbjct: 95 ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 154
Query: 157 NQRSIDE 163
+QR ++E
Sbjct: 155 DQREVNE 161
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 62/87 (71%)
Query: 50 VGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITST 109
G GKS LL +F +N F TIGV+F R ++V G+ VKLQIWDTAGQERFR++T +
Sbjct: 34 AGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRS 93
Query: 110 YYRGTHGVIVVYDVTSGETFANVKRWL 136
YYRG G ++VYD+TS ET+ ++ WL
Sbjct: 94 YYRGAAGALLVYDITSRETYNSLAAWL 120
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 84/127 (66%), Gaps = 14/127 (11%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTI--DVNGE--------KVKLQIWDTAGQ 100
GVGK++ L R++DN F+ +ITT+G+DF+ + + D G KV LQ+WDTAG
Sbjct: 21 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGL 80
Query: 101 ERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGL- 156
ERFR++T+ ++R G ++++D+TS ++F NV+ W+ +++ N CE + +L G + L
Sbjct: 81 ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 140
Query: 157 NQRSIDE 163
+QR ++E
Sbjct: 141 DQREVNE 147
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 84/127 (66%), Gaps = 14/127 (11%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTI--DVNGE--------KVKLQIWDTAGQ 100
GVGK++ L R++DN F+ +ITT+G+DF+ + + D G KV LQ+WDTAG
Sbjct: 21 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGL 80
Query: 101 ERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGL- 156
ERFR++T+ ++R G ++++D+TS ++F NV+ W+ +++ N CE + +L G + L
Sbjct: 81 ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 140
Query: 157 NQRSIDE 163
+QR ++E
Sbjct: 141 DQREVNE 147
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 63/88 (71%)
Query: 52 VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYY 111
VGK+SL++R+ +N F+ +ITT+G F + +++ G++V L IWDTAGQERF + YY
Sbjct: 17 VGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYY 76
Query: 112 RGTHGVIVVYDVTSGETFANVKRWLHEI 139
R ++G I+VYD+T ++F VK W+ E+
Sbjct: 77 RDSNGAILVYDITDEDSFQKVKNWVKEL 104
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 66/105 (62%)
Query: 32 GKNGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVK 91
G T+ F K + G GKS LL +F + F TIGV+F + I+V G+ VK
Sbjct: 1 GHMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVK 60
Query: 92 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWL 136
LQIWDTAGQERFR++T +YYRG G ++VYD+TS ET+ + WL
Sbjct: 61 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWL 105
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 60/87 (68%)
Query: 50 VGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITST 109
G GKS LL +F + F TIGV+F + I+V G+ VKLQIWDTAGQERFR++T +
Sbjct: 20 AGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRS 79
Query: 110 YYRGTHGVIVVYDVTSGETFANVKRWL 136
YYRG G ++VYD+TS ET+ + WL
Sbjct: 80 YYRGAAGALLVYDITSRETYNALTNWL 106
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 67/96 (69%)
Query: 46 FLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT 105
FL VGK+S++ RF +TF +Y +TIG+DF +T+ ++ V+LQ+WDTAGQERFR+
Sbjct: 6 FLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRS 65
Query: 106 ITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIEN 141
+ +Y R + IVVYD+T+ ++F N +W+ +I N
Sbjct: 66 LIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILN 101
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 82/127 (64%), Gaps = 14/127 (11%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTI--DVNGE--------KVKLQIWDTAGQ 100
GVGK++ L R++DN F+ +ITT+G+DF+ + + D G KV LQ+WDTAG
Sbjct: 21 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGL 80
Query: 101 ERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGL- 156
ERFR++T+ ++R G ++ +D+TS ++F NV+ W +++ N CE + +L G + L
Sbjct: 81 ERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLP 140
Query: 157 NQRSIDE 163
+QR ++E
Sbjct: 141 DQREVNE 147
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 82/127 (64%), Gaps = 14/127 (11%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTI--DVNGE--------KVKLQIWDTAGQ 100
GVGK++ L R++DN F+ +ITT+G+DF+ + + D G KV LQ+WDTAG
Sbjct: 21 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGL 80
Query: 101 ERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGL- 156
ERFR++T+ ++R G ++ +D+TS ++F NV+ W +++ N CE + +L G + L
Sbjct: 81 ERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLP 140
Query: 157 NQRSIDE 163
+QR ++E
Sbjct: 141 DQREVNE 147
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 62/88 (70%)
Query: 52 VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYY 111
VGK+SL++R+ +N F+ +ITT+ F + +++ G++V L IWDTAGQERF + YY
Sbjct: 31 VGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYY 90
Query: 112 RGTHGVIVVYDVTSGETFANVKRWLHEI 139
R ++G I+VYD+T ++F VK W+ E+
Sbjct: 91 RDSNGAILVYDITDEDSFQKVKNWVKEL 118
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 62/88 (70%)
Query: 52 VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYY 111
VGK+SL++R+ +N F+ +ITT+ F + +++ G++V L IWDTAGQERF + YY
Sbjct: 17 VGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYY 76
Query: 112 RGTHGVIVVYDVTSGETFANVKRWLHEI 139
R ++G I+VYD+T ++F VK W+ E+
Sbjct: 77 RDSNGAILVYDITDEDSFQKVKNWVKEL 104
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 60/97 (61%)
Query: 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER 102
K L GVGKSS++ RF +++F + TIG F +T+ E K IWDTAGQER
Sbjct: 7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQER 66
Query: 103 FRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
FR + YYRG+ I+VYD+T ETF+ +K W+ E+
Sbjct: 67 FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVREL 103
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 70/105 (66%), Gaps = 6/105 (5%)
Query: 41 SQKSSFLQLV-----GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVK-LQI 94
S+K + L+++ GVGK+SL+ R+ ++ +S Y TIG DF + + V+G+KV +Q+
Sbjct: 3 SRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQV 62
Query: 95 WDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
WDTAGQERF+++ +YRG ++VYDVT+ +F N+K W E
Sbjct: 63 WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEF 107
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGKSSL++RF F +TIG F +T+ ++ VK +IWDTAGQER+ ++ Y
Sbjct: 17 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 76
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE--VVNRILGLRLGL-NQRSID 162
YRG IVVYD+T+ E+FA K W+ E++ +V + G + L N+R++D
Sbjct: 77 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD 131
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGKSSL++RF F +TIG F +T+ ++ VK +IWDTAGQER+ ++ Y
Sbjct: 16 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 75
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE--VVNRILGLRLGL-NQRSID 162
YRG IVVYD+T+ E+FA K W+ E++ +V + G + L N+R++D
Sbjct: 76 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD 130
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGKSSL++RF F +TIG F +T+ ++ VK +IWDTAGQER+ ++ Y
Sbjct: 17 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPXY 76
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE--VVNRILGLRLGL-NQRSID 162
YRG IVVYD+T+ E+FA K W+ E++ +V + G + L N+R++D
Sbjct: 77 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD 131
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Query: 52 VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYY 111
VGKSSL++RF F +TIG F +T+ ++ VK +IWDTAGQER+ ++ YY
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 112 RGTHGVIVVYDVTSGETFANVKRWLHEIENNCE--VVNRILGLRLGL-NQRSID 162
RG IVVYD+T+ E+FA K W+ E++ +V + G + L N+R++D
Sbjct: 77 RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD 130
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Query: 52 VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYY 111
VGKSSL++RF F +TIG F +T+ ++ VK +IWDTAGQER+ ++ YY
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 112 RGTHGVIVVYDVTSGETFANVKRWLHEIENNCE--VVNRILGLRLGL-NQRSID 162
RG IVVYD+T+ E+FA K W+ E++ +V + G + L N+R++D
Sbjct: 77 RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD 130
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 71/124 (57%), Gaps = 8/124 (6%)
Query: 20 VQGAREQIPTGRGKNGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFK 79
V GA +P R + IF K + VGK+ L RF F TIGVDF+
Sbjct: 15 VSGASGCLPPARSR-----IF--KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFR 67
Query: 80 IRTIDVNGEKVKLQIWDTAGQERFR-TITSTYYRGTHGVIVVYDVTSGETFANVKRWLHE 138
R +D++GE++K+Q+WDTAGQERFR ++ YYR H V+ VYD T+ +F ++ W+ E
Sbjct: 68 ERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEE 127
Query: 139 IENN 142
+ +
Sbjct: 128 CKQH 131
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Query: 52 VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYY 111
VGKSSL++RF F +TIG F +T+ ++ VK +IWDTAGQER+ ++ YY
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 112 RGTHGVIVVYDVTSGETFANVKRWLHEIENNCE--VVNRILGLRLGL-NQRSID 162
RG IVVYD+T+ E+FA K W+ E++ +V + G + L N+R++D
Sbjct: 77 RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD 130
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Query: 52 VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR-TITSTY 110
VGK+ L RF F TIGVDF+ R +D++GE++K+Q+WDTAGQERFR ++ Y
Sbjct: 31 VGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHY 90
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENN 142
YR H V+ VYD+T+ +F ++ W+ E + +
Sbjct: 91 YRNVHAVVFVYDMTNMASFHSLPAWIEECKQH 122
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Query: 52 VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYY 111
VGKSSL++RF F +TIG F +T+ ++ VK +IWDTAGQER+ ++ YY
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 112 RGTHGVIVVYDVTSGETFANVKRWLHEIENNCE--VVNRILGLRLGL-NQRSID 162
RG IVVYD+T+ E+FA K W+ E++ +V + G + L N+R++D
Sbjct: 77 RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD 130
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Query: 52 VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYY 111
VGKSSL++RF F +TIG F +T+ ++ VK +IWDTAGQER+ ++ YY
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 112 RGTHGVIVVYDVTSGETFANVKRWLHEIENNCE--VVNRILGLRLGL-NQRSID 162
RG IVVYD+T+ E+FA K W+ E++ +V + G + L N+R++D
Sbjct: 77 RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD 130
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 59/87 (67%)
Query: 50 VGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITST 109
G GKS LL +F + F TIGV+F + I+V G+ VKLQIWDTAG ERFR++T +
Sbjct: 17 AGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRSVTRS 76
Query: 110 YYRGTHGVIVVYDVTSGETFANVKRWL 136
YYRG G ++VYD+TS ET+ + WL
Sbjct: 77 YYRGAAGALLVYDITSRETYNALTNWL 103
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGKSSL++RF F +TIG F +++ ++ VK +IWDTAGQER+ ++ Y
Sbjct: 18 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC--EVVNRILGLRLGLNQRSIDEVNLCH 168
YRG IVVYD+T+ ETFA K W+ E++ +V + G + L + + E
Sbjct: 78 YRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQ 137
Query: 169 RGSVDGSV 176
+ D S+
Sbjct: 138 AYADDNSL 145
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 59/91 (64%)
Query: 50 VGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITST 109
VG GKSSL++RF + F +TIG F +T+ VN VK +IWDTAGQER+ ++
Sbjct: 21 VGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPM 80
Query: 110 YYRGTHGVIVVYDVTSGETFANVKRWLHEIE 140
YYRG I+V+DVT+ +F K+W+ E++
Sbjct: 81 YYRGAAAAIIVFDVTNQASFERAKKWVQELQ 111
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 59/97 (60%)
Query: 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER 102
K L GVGKSS++ RF +++F + TIG F +T+ E K IWDTAG ER
Sbjct: 8 KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER 67
Query: 103 FRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
FR + YYRG+ I+VYD+T ETF+ +K W+ E+
Sbjct: 68 FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVREL 104
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 58/90 (64%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGKSSL++RF F +TIG F +T+ ++ VK +IWDTAGQER+ ++ Y
Sbjct: 13 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 72
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIE 140
YRG IVVYD+T+ +TFA K W+ E++
Sbjct: 73 YRGAQAAIVVYDITNTDTFARAKNWVKELQ 102
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 3/115 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGKSSL++RF F +TIG F +T+ ++ VK +IWDTAG ER+ ++ Y
Sbjct: 15 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMY 74
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE--VVNRILGLRLGL-NQRSID 162
YRG IVVYD+T+ E+FA K W+ E++ +V + G + L N+R++D
Sbjct: 75 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD 129
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 77/126 (61%), Gaps = 5/126 (3%)
Query: 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER 102
K FL VGK+SL+ RF ++F +Y TIG+DF +T+ + ++LQ+WDTAGQER
Sbjct: 8 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 67
Query: 103 FRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI--ENNCEVVNRILGLRLGL---N 157
FR++ +Y R + +VVYD+T+ +F +W+ ++ E +V+ ++G + L
Sbjct: 68 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 127
Query: 158 QRSIDE 163
Q SI+E
Sbjct: 128 QVSIEE 133
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 60/100 (60%)
Query: 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER 102
K L GVGKSS++ RF + F + TIG F +T+ E K IWDTAGQER
Sbjct: 25 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQER 84
Query: 103 FRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENN 142
F ++ YYRG+ ++VYD+T ++F +K+W+ E++ +
Sbjct: 85 FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEH 124
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Query: 46 FLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT 105
FL VGK+SL+ RF ++F +Y TIG+DF +T+ + V+LQ+WDTAGQERFR+
Sbjct: 19 FLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS 78
Query: 106 ITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI--ENNCEVVNRILGLRLGLNQR 159
+ +Y R + +VVYD+T+ +F +W+ ++ E +V+ ++G + L+ +
Sbjct: 79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 89.7 bits (221), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 53/89 (59%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGKSS++ R+ F+ Y TIGVDF R I VN E V+L +WDTAGQE F IT Y
Sbjct: 15 AVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAY 74
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEI 139
YRG ++V+ T E+F + W ++
Sbjct: 75 YRGAQACVLVFSTTDRESFEAISSWREKV 103
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 57/90 (63%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGKSSL++RF F +TI F +T+ ++ VK +IWDTAGQER+ ++ Y
Sbjct: 15 AVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 74
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIE 140
YRG IVVYD+T+ +TFA K W+ E++
Sbjct: 75 YRGAQAAIVVYDITNTDTFARAKNWVKELQ 104
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 57/90 (63%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGKSSL++RF F +TIG F +T+ ++ VK +IWDTAG ER+ ++ Y
Sbjct: 15 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMY 74
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIE 140
YRG IVVYD+T+ +TFA K W+ E++
Sbjct: 75 YRGAQAAIVVYDITNTDTFARAKNWVKELQ 104
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 77/126 (61%), Gaps = 5/126 (3%)
Query: 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER 102
K FL VGK+SL+ RF ++F +Y TIG+DF +T+ + V+LQ+WDTAGQER
Sbjct: 3 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 103 FRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI--ENNCEVVNRILGLRLGL---N 157
FR++ +Y R + +VVYD+T+ +F +W+ ++ E +V+ ++G + L
Sbjct: 63 FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 122
Query: 158 QRSIDE 163
Q SI+E
Sbjct: 123 QVSIEE 128
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 81/142 (57%), Gaps = 7/142 (4%)
Query: 27 IPTGRGKNGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVN 86
+ TG P F K FL VGK+SL+ RF ++F +Y TIG+DF +T+ +
Sbjct: 1 MSTGGDFGNPLRKF--KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE 58
Query: 87 GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI--ENNCE 144
++LQ+WDTAG ERFR++ +Y R + +VVYD+T+ +F +W+ ++ E +
Sbjct: 59 DRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD 118
Query: 145 VVNRILGLRLGL---NQRSIDE 163
V+ ++G + L Q SI+E
Sbjct: 119 VIIMLVGNKTDLADKRQVSIEE 140
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 76/122 (62%), Gaps = 3/122 (2%)
Query: 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER 102
K FL VGK+SL+ RF ++F +Y TIG+DF +T+ + V+LQ+WDTAGQER
Sbjct: 4 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 103 FRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI--ENNCEVVNRILGLRLGL-NQR 159
FR++ +Y R + +VVYD+T+ +F +W+ ++ E +V+ ++G + L ++R
Sbjct: 64 FRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKR 123
Query: 160 SI 161
I
Sbjct: 124 QI 125
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 58/103 (56%)
Query: 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQ 100
S K L VGKSS+++RF N F+ + TIG F + + +N VK +IWDTAGQ
Sbjct: 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62
Query: 101 ERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNC 143
ERF ++ YYR +VVYDVT ++F + W+ E+
Sbjct: 63 ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA 105
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 75/130 (57%), Gaps = 11/130 (8%)
Query: 43 KSSFLQLV-----GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDT 97
KSS +++ GVGKSSL+ R+ N F TIGV+F + ++V+G V +QIWDT
Sbjct: 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 63
Query: 98 AGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNR------ILG 151
AGQERFR++ + +YRG+ ++ + V ++F N+ W E +V ILG
Sbjct: 64 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123
Query: 152 LRLGLNQRSI 161
++ +++R +
Sbjct: 124 NKIDISERQV 133
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 81/129 (62%), Gaps = 18/129 (13%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVN----------GEKVKLQIWDTAGQ 100
GVGK+S+L +++D F+ +ITT+G+DF+ + + G+++ LQ+WDTAG
Sbjct: 21 GVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL 80
Query: 101 ERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRW-----LHEIENNCEVVNRILGLRLG 155
ERFR++T+ ++R G ++++D+T+ ++F NV+ W +H N ++V + G +
Sbjct: 81 ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV--LCGNKSD 138
Query: 156 L-NQRSIDE 163
L +QR++ E
Sbjct: 139 LEDQRAVKE 147
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 75/130 (57%), Gaps = 11/130 (8%)
Query: 43 KSSFLQLV-----GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDT 97
KSS +++ GVGKSSL+ R+ N F TIGV+F + ++V+G V +QIWDT
Sbjct: 6 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 65
Query: 98 AGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNR------ILG 151
AGQERFR++ + +YRG+ ++ + V ++F N+ W E +V ILG
Sbjct: 66 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 125
Query: 152 LRLGLNQRSI 161
++ +++R +
Sbjct: 126 NKIDISERQV 135
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 63/102 (61%), Gaps = 5/102 (4%)
Query: 43 KSSFLQLV-----GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDT 97
KSS +++ GVGKSSL+ R+ N F TIGV+F + ++V+G V +QIWDT
Sbjct: 8 KSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 67
Query: 98 AGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
AGQERFR++ + +YRG+ ++ + V ++F N+ W E
Sbjct: 68 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEF 109
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 81/142 (57%), Gaps = 7/142 (4%)
Query: 27 IPTGRGKNGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVN 86
+ TG P F K FL VGK+SL+ RF ++F +Y TIG+DF +T+ +
Sbjct: 4 MSTGGDFGNPLRKF--KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE 61
Query: 87 GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI--ENNCE 144
V+LQ+WDTAG ERFR++ +Y R + +VVYD+T+ +F +W+ ++ E +
Sbjct: 62 DRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSD 121
Query: 145 VVNRILGLRLGL---NQRSIDE 163
V+ ++G + L Q SI+E
Sbjct: 122 VIIMLVGNKTDLADKRQVSIEE 143
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 56/89 (62%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGK+SL+ ++ + FS Y TIG DF + + V+ V +QIWDTAGQERF+++ +
Sbjct: 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAF 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEI 139
YRG ++V+DVT+ TF + W E
Sbjct: 78 YRGADCCVLVFDVTAPNTFKTLDSWRDEF 106
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 56/89 (62%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGK+SL+ ++ + FS Y TIG DF + + V+ V +QIWDTAGQERF+++ +
Sbjct: 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAF 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEI 139
YRG ++V+DVT+ TF + W E
Sbjct: 78 YRGADCCVLVFDVTAPNTFKTLDSWRDEF 106
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 76/126 (60%), Gaps = 5/126 (3%)
Query: 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER 102
K FL VGK+SL+ RF ++F +Y TIG+DF +T+ + V+LQ+WDTAG ER
Sbjct: 8 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLER 67
Query: 103 FRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI--ENNCEVVNRILGLRLGL---N 157
FR++ +Y R + +VVYD+T+ +F +W+ ++ E +V+ ++G + L
Sbjct: 68 FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 127
Query: 158 QRSIDE 163
Q SI+E
Sbjct: 128 QVSIEE 133
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 5/104 (4%)
Query: 41 SQKSSFLQLV-----GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIW 95
S+K L+++ GVGK+SL+ ++ + FS Y TIG DF + + V+ V +QIW
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 62
Query: 96 DTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
DTAGQERF+++ +YRG ++V+DVT+ TF + W E
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEF 106
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 63/104 (60%), Gaps = 5/104 (4%)
Query: 41 SQKSSFLQLV-----GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIW 95
S KS L+++ GVGKSSL+ R+ N F TIGV+F R ++V+G V LQIW
Sbjct: 2 SGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIW 61
Query: 96 DTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
DTAGQERF+++ + +YRG ++ + V ++F N+ W E
Sbjct: 62 DTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEF 105
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 5/104 (4%)
Query: 41 SQKSSFLQLV-----GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIW 95
S+K L+++ GVGK+SL+ ++ + FS Y TIG DF + + V+ V +QIW
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 62
Query: 96 DTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
DTAG ERF+++ +YRG ++V+DVT+ TF + W E
Sbjct: 63 DTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEF 106
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 32 GKNGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVK 91
G+ P + S K + G GK+SLL+ F+D F SY T+ + + + V G+ V
Sbjct: 25 GEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVH 83
Query: 92 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL 150
L IWDTAGQ+ + + +Y +++ +DVTS +F N+ RW E+ + C+ V I+
Sbjct: 84 LHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIV 143
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 68/124 (54%), Gaps = 5/124 (4%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ NTF Y+ T+ +F + VNG V L +WDTAGQE + +
Sbjct: 18 AVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQEDYNRLRPLS 76
Query: 111 YRGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL-GLRLGLNQRSIDEVNLCH 168
YRG I+ + + S ++ NV K+W+ E+++ V +L G +L L R + + H
Sbjct: 77 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDL--RDDKQFFIDH 134
Query: 169 RGSV 172
G+V
Sbjct: 135 PGAV 138
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVKLQIWDTAGQERFRTITST 109
GVGK++ + R D F +Y T+G V+ + +D G +K +WDTAGQE+ +
Sbjct: 21 GVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDV 80
Query: 110 YYRGTHGVIVVYDVTSGETFANVKRWLHEIE 140
YY G G I+ +DVTS T N+ RW+ E +
Sbjct: 81 YYIGASGAILFFDVTSRITCQNLARWVKEFQ 111
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GK++ + R F Y+ T+GV+ N +K +WDTAGQE+F + Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLEDGY 79
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSI 161
Y I+++DVTS T+ NV W ++ CE + +L G ++ + R +
Sbjct: 80 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 131
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GK++ + R F Y+ T+GV+ N +K +WDTAGQE+F + Y
Sbjct: 25 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 84
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSI 161
Y I+++DVTS T+ NV W ++ CE + +L G ++ + R +
Sbjct: 85 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 136
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GK++ + R F Y+ T+GV+ N +K +WDTAGQE+F + Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 79
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSI 161
Y I+++DVTS T+ NV W ++ CE + +L G ++ + R +
Sbjct: 80 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 131
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GK++ + R F Y+ T+GV+ N +K +WDTAGQE+F + Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 79
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSI 161
Y I+++DVTS T+ NV W ++ CE + +L G ++ + R +
Sbjct: 80 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 131
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GK++ + R F Y+ T+GV+ N +K +WDTAGQE+F + Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 79
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSI 161
Y I+++DVTS T+ NV W ++ CE + +L G ++ + R +
Sbjct: 80 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 131
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GK++ + R F Y+ T+GV+ N +K +WDTAGQE+F + Y
Sbjct: 13 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 72
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSI 161
Y I+++DVTS T+ NV W ++ CE + +L G ++ + R +
Sbjct: 73 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 124
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N FSG YI T+ ++ + V+G+ V L +WDTAGQE + +
Sbjct: 23 AVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 81
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S +F NV+ +W E+ ++C IL G +L L
Sbjct: 82 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 129
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 5/124 (4%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ +LI ++ NTF Y+ T+ +F + V+G V L +WDTAGQE + +
Sbjct: 16 AVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQEDYNRLRPLS 74
Query: 111 YRGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL-GLRLGLNQRSIDEVNLCH 168
YRG I+ + + S ++ NV K+W+ E+ + V IL G +L L R + + H
Sbjct: 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL--RDDKQFFIDH 132
Query: 169 RGSV 172
G+V
Sbjct: 133 PGAV 136
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F G YI T+ ++ + V+G+ V L +WDTAGQE + +
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S +F NV+ +W E+ ++C IL G +L L
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GK++ + R F Y+ T+GV+ N +K +WDTAGQE+F + Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 79
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSI 161
Y I+ +DVTS T+ NV W ++ CE + +L G ++ + R +
Sbjct: 80 YIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 131
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F G YI T+ ++ + V+G+ V L +WDTAGQE + +
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S +F NV+ +W E+ ++C IL G +L L
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F G YI T+ ++ + V+G+ V L +WDTAGQE + +
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S +F NV+ +W E+ ++C IL G +L L
Sbjct: 72 YPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F G YI T+ ++ + V+G+ V L +WDTAGQE + +
Sbjct: 15 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 73
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S +F NV+ +W E+ ++C IL G +L L
Sbjct: 74 YPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 121
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F G YI T+ ++ + V+G+ V L +WDTAGQE + +
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S +F NV+ +W E+ ++C IL G +L L
Sbjct: 72 YPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GK++ + R F YI TIGV+ + N ++K +WDTAG E+F + Y
Sbjct: 22 GTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGY 81
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSI 161
Y I+++DVTS T+ NV W ++ CE + +L G ++ + +R +
Sbjct: 82 YINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKV 133
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F G YI T+ ++ + V+G+ V L +WDTAGQE + +
Sbjct: 17 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 75
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S +F NV+ +W E+ ++C IL G +L L
Sbjct: 76 YPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 123
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F G YI T+ ++ + V+G+ V L +WDTAGQE + +
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S +F NV+ +W E+ ++C IL G +L L
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GK++ + R F Y+ T+GV+ N +K +WDTAGQE+F + Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 79
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSI 161
Y I+++DVTS T+ NV W ++ CE + +L G ++ + R +
Sbjct: 80 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 131
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GK++ + R F Y+ T+GV+ N +K +WDTAGQE+F + Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 79
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSI 161
Y I+++DVTS T+ NV W ++ CE + +L G ++ + R +
Sbjct: 80 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 131
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F G YI T+ ++ + V+G+ V L +WDTAGQE + +
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S +F NV+ +W E+ ++C IL G +L L
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F G YI T+ ++ + V+G+ V L +WDTAGQE + +
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S +F NV+ +W E+ ++C IL G +L L
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F G YI T+ ++ + V+G+ V L +WDTAGQE + +
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S +F NV+ +W E+ ++C IL G +L L
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GK++ + R F Y+ T+GV+ N +K +WDTAGQE++ + Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYGGLRDGY 79
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSI 161
Y I+++DVTS T+ NV W ++ CE + +L G ++ + R +
Sbjct: 80 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 131
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F G YI T+ ++ + V+G+ V L +WDTAGQE + +
Sbjct: 40 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 98
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S +F NV+ +W E+ ++C IL G +L L
Sbjct: 99 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 146
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 50 VGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITST 109
V GK+ LLI FS + F Y+ T+ ++ + I+V+G++V+L +WDTAGQE +
Sbjct: 14 VACGKTCLLIVFSKDQFPAVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRARPL 72
Query: 110 YYRGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL 150
Y T +++ + + S ++ N+ ++W E+++ C V IL
Sbjct: 73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F G YI T+ ++ + V+G+ V L +WDTAGQE + +
Sbjct: 32 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 90
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S +F NV+ +W E+ ++C IL G +L L
Sbjct: 91 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 138
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
Query: 50 VGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITST 109
V GK+ LLI FS + F Y+ T+ ++ + I+V+G++V+L +WDTAGQE + +
Sbjct: 15 VACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPL 73
Query: 110 YYRGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL 150
Y T +++ + + S ++ N+ ++W E+++ C V IL
Sbjct: 74 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 115
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F G YI T+ ++ + V+G+ V L +WDTAGQE + +
Sbjct: 20 AVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 78
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S +F NV+ +W E+ ++C IL G +L L
Sbjct: 79 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 126
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GK++ + R F YI TIGV+ + N ++K +WDTAG E+F + Y
Sbjct: 15 GTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGY 74
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSI 161
Y I+++DVTS T+ NV W ++ CE + +L G ++ + +R +
Sbjct: 75 YINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKV 126
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GK++ + R F YI TIGV+ + N ++K +WDTAG E+F + Y
Sbjct: 14 GTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGY 73
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSI 161
Y I+++DVTS T+ NV W ++ CE + +L G ++ + +R +
Sbjct: 74 YINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKV 125
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 61/101 (60%), Gaps = 2/101 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GK+ LLI FS + F Y+ T+ ++ + I+V+G++V+L +WDTAGQE + +
Sbjct: 35 ACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 93
Query: 111 YRGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL 150
Y T +++ + V S ++ N+ ++W+ E+++ C V IL
Sbjct: 94 YPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIIL 134
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 50 VGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITST 109
V VGK+ LLI ++ N F G YI T+ ++ + V+ + V L +WDTAGQE + +
Sbjct: 18 VAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQEDYDRLRPL 76
Query: 110 YYRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S ++ NV+ +W E+ ++C IL G +L L
Sbjct: 77 SYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDL 125
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F G YI T+ ++ + V+G+ V L +WDTAGQE + +
Sbjct: 14 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 72
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S +F NV+ +W E+ ++C +L G +L L
Sbjct: 73 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDL 120
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F G YI T+ ++ + V+G+ V L +WDTAGQE + +
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S +F NV+ +W E+ ++C +L G +L L
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDL 119
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 53 GKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGE-KVKLQIWDTAGQERFRTITSTYY 111
GK+SL F+ TF Y TIG+DF +R I + G V LQIWD GQ + Y
Sbjct: 18 GKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYI 77
Query: 112 RGTHGVIVVYDVTSGETFANVKRW 135
G GV++VYD+T+ ++F N++ W
Sbjct: 78 YGAQGVLLVYDITNYQSFENLEDW 101
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F G YI T+ ++ + V+G+ V L +WDTAGQE + +
Sbjct: 14 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 72
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S +F NV+ +W E+ ++C +L G +L L
Sbjct: 73 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDL 120
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 50 VGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITST 109
V VGK+ LLI ++ N F Y+ T+ ++ + T+ + GE L ++DTAGQE + +
Sbjct: 12 VAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 70
Query: 110 YYRGTHGVIVVYDVTSGETFANVK-RWLHEIENNC 143
Y T +V + V S +F NVK +W+ EI ++C
Sbjct: 71 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 50 VGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITST 109
V VGK+ LLI ++ N F G YI T+ ++ + V+ + V L +WDTAGQE + +
Sbjct: 19 VAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQEDYDRLRPL 77
Query: 110 YYRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S ++ NV+ +W E+ ++C IL G +L L
Sbjct: 78 SYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDL 126
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F G YI T+ ++ + V+ + V L +WDTAGQE + +
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S ++ NV+ +W E+ ++C IL G +L L
Sbjct: 72 YPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDL 119
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GK++ + R F Y+ T+GV+ N +K +WDTAG E+F + Y
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGY 79
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSI 161
Y I+++DVTS T+ NV W ++ CE + +L G ++ + R +
Sbjct: 80 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 131
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 60/101 (59%), Gaps = 2/101 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GK+ LLI FS + F Y+ T+ ++ I I+V+G++V+L +WDTAGQE + +
Sbjct: 35 ACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQEDYDRLRPLS 93
Query: 111 YRGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL 150
Y T +++ + + S ++ N+ ++W E+++ C V IL
Sbjct: 94 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 134
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 60/101 (59%), Gaps = 2/101 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GK+ LLI FS + F Y+ T+ ++ + I+V+G++V+L +WDTAGQE + +
Sbjct: 17 ACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 75
Query: 111 YRGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL 150
Y T +++ + + S ++ N+ ++W E+++ C V IL
Sbjct: 76 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 116
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 60/101 (59%), Gaps = 2/101 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GK+ LLI FS + F Y+ T+ ++ + I+V+G++V+L +WDTAGQE + +
Sbjct: 16 ACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 74
Query: 111 YRGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL 150
Y T +++ + + S ++ N+ ++W E+++ C V IL
Sbjct: 75 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 115
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GK++ + R Y+ T+GV+ N +K +WDTAGQE+F + Y
Sbjct: 25 GTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 84
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSI 161
Y I+++DVTS T+ NV W ++ CE + +L G ++ + R +
Sbjct: 85 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 136
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F Y+ T+ ++ + T+ + GE L ++DTAGQE + +
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNC 143
Y T +V + V S +F NVK +W+ EI ++C
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 60/101 (59%), Gaps = 2/101 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GK+ LLI FS + F Y+ T+ ++ + I+V+G++V+L +WDTAGQE + +
Sbjct: 19 ACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 77
Query: 111 YRGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL 150
Y T +++ + + S ++ N+ ++W E+++ C V IL
Sbjct: 78 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 118
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 60/101 (59%), Gaps = 2/101 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GK+ LLI FS + F Y+ T+ ++ + I+V+G++V+L +WDTAGQE + +
Sbjct: 15 ACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 73
Query: 111 YRGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL 150
Y T +++ + + S ++ N+ ++W E+++ C V IL
Sbjct: 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F G YI T+ ++ + V+G+ V L +WDTAG E + +
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S +F NV+ +W E+ ++C IL G +L L
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ +LI ++ NTF Y+ T+ +F + V+G V L +WDTAGQE + +
Sbjct: 16 AVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLS 74
Query: 111 YRGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL-GLRLGL 156
YRG ++ + + S ++ N+ K+WL E+++ + +L G +L L
Sbjct: 75 YRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDL 122
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N G YI T+ ++ + V+G+ V L +WDTAGQE + +
Sbjct: 40 AVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 98
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S +F NV+ +W E+ ++C IL G +L L
Sbjct: 99 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 146
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 60/101 (59%), Gaps = 2/101 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GK+ LLI FS + F Y+ T+ ++ + I+V+G++V+L +WDTAGQE + +
Sbjct: 17 ACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 75
Query: 111 YRGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL 150
Y T +++ + + S ++ N+ ++W E+++ C V IL
Sbjct: 76 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 116
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GK++ + R F Y+ T+GV+ N +K +WDTAG E+F + Y
Sbjct: 22 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGY 81
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSI 161
Y I+++DVTS T+ NV W ++ CE + +L G ++ + R +
Sbjct: 82 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 133
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 60/101 (59%), Gaps = 2/101 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GK+ LLI FS + F Y+ T+ ++ + I+V+G++V+L +WDTAGQE + +
Sbjct: 18 ACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 76
Query: 111 YRGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL 150
Y T +++ + + S ++ N+ ++W E+++ C V IL
Sbjct: 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 117
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F G YI T+ ++ + V+G+ V L +WDTAG E + +
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S +F NV+ +W E+ ++C IL G +L L
Sbjct: 72 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 60/101 (59%), Gaps = 2/101 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GK+ LLI FS + F Y+ T+ ++ + I+V+G++V+L +WDTAGQE + +
Sbjct: 17 ACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 75
Query: 111 YRGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL 150
Y T +++ + + S ++ N+ ++W E+++ C V IL
Sbjct: 76 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 116
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GK++ + R F Y+ T+GV+ N +K +WDTAG E+F + Y
Sbjct: 16 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGY 75
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSI 161
Y I+++DVTS T+ NV W ++ CE + +L G ++ + R +
Sbjct: 76 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 127
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F Y+ T+ ++ + T+ + GE L ++DTAGQE + +
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNC 143
Y T +V + V S +F NVK +W+ EI ++C
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F Y+ T+ ++ + T+ + GE L ++DTAGQE + +
Sbjct: 14 AVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLS 72
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNC 143
Y T +V + V S +F NVK +W+ EI ++C
Sbjct: 73 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 106
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F Y+ T+ ++ + T+ + GE L ++DTAGQE + +
Sbjct: 15 AVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLS 73
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNC 143
Y T +V + V S +F NVK +W+ EI ++C
Sbjct: 74 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 107
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F Y+ T+ ++ + T+ + GE L ++DTAGQE + +
Sbjct: 16 AVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLS 74
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNC 143
Y T +V + V S +F NVK +W+ EI ++C
Sbjct: 75 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 108
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F Y+ T+ ++ + T+ + GE L ++DTAGQE + +
Sbjct: 23 AVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLS 81
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL 150
Y T +V + V S +F NVK +W+ EI ++C +L
Sbjct: 82 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL 122
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F G YI T+ ++ + V+G+ V L +WDTAG E + +
Sbjct: 16 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLRPLS 74
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S +F NV+ +W E+ ++C IL G +L L
Sbjct: 75 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 122
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F Y+ T+ ++ + T+ + GE L ++DTAGQE + +
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNC 143
Y T +V + V S +F NVK +W+ EI ++C
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F Y+ T+ ++ + T+ + GE L ++DTAGQE + +
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNC 143
Y T +V + V S +F NVK +W+ EI ++C
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F Y+ T+ ++ + T+ + GE L ++DTAGQE + +
Sbjct: 16 AVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLS 74
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNC 143
Y T +V + V S +F NVK +W+ EI ++C
Sbjct: 75 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 108
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F Y+ T+ ++ + T+ + GE L ++DTAGQE + +
Sbjct: 20 AVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLS 78
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNC 143
Y T +V + V S +F NVK +W+ EI ++C
Sbjct: 79 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 112
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F Y+ T+ ++ + T+ + GE L ++DTAGQE + +
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNC 143
Y T +V + V S +F NVK +W+ EI ++C
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F Y+ T+ ++ + T+ + GE L ++DTAGQE + +
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNC 143
Y T +V + V S +F NVK +W+ EI ++C
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F G YI T+ ++ + V+G+ V L +WDTAG E + +
Sbjct: 40 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLRPLS 98
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S +F NV+ +W E+ ++C IL G +L L
Sbjct: 99 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 146
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F Y+ T+ ++ + T+ + GE L ++DTAGQE + +
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNC 143
Y T +V + V S +F NVK +W+ EI ++C
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F Y+ T+ ++ + T+ + GE L ++DTAGQE + +
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNC 143
Y T +V + V S +F NVK +W+ EI ++C
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F Y+ T+ ++ + T+ + GE L ++DTAGQE + +
Sbjct: 15 AVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLS 73
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNC 143
Y T +V + V S +F NVK +W+ EI ++C
Sbjct: 74 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 107
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F Y+ T+ ++ + T+ + GE L ++DTAGQE + +
Sbjct: 17 AVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLS 75
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNC 143
Y T +V + V S +F NVK +W+ EI ++C
Sbjct: 76 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 109
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F Y+ T+ ++ + T+ + GE L ++DTAGQE + +
Sbjct: 20 AVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLS 78
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL 150
Y T +V + V S +F NVK +W+ EI ++C +L
Sbjct: 79 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL 119
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+SL++ ++ N + YI T +F + V+G V+LQ+ DTAGQ+ F +
Sbjct: 30 AVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQDEFDKLRPLC 88
Query: 111 YRGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL 150
Y T ++ + V S +F NV ++W+ EI +C IL
Sbjct: 89 YTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIIL 129
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 37/159 (23%)
Query: 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDV--------------- 85
S K+ L VGKSS+++R + +TF + TTIG F +++
Sbjct: 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNN 66
Query: 86 ----------------------NGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDV 123
N +K IWDTAGQER+ +I YYRG IVV+D+
Sbjct: 67 NINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDI 126
Query: 124 TSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQRSID 162
++ T K W+++++ + + ++ ++ N+ +D
Sbjct: 127 SNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVD 165
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 8/120 (6%)
Query: 44 SSFLQLV-----GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTA 98
S F++ V VGK+ +LI ++ N F YI T+ +F + V+G+ V L +WDTA
Sbjct: 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTA 65
Query: 99 GQERFRTITSTYYRGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL-GLRLGL 156
GQE + + YRG ++ + + S ++ NV K+W+ E+ V +L G +L L
Sbjct: 66 GQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 125
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F Y+ + ++ + T+ + GE L ++DTAGQE + +
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNC 143
Y T +V + V S +F NVK +W+ EI ++C
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F Y+ T+ ++ + T+ + GE L + DTAGQE + +
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNC 143
Y T +V + V S +F NVK +W+ EI ++C
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N Y+ T+ ++ + T+ + GE L ++DTAGQE + +
Sbjct: 13 AVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNC 143
Y T +V + V S +F NVK +W+ EI ++C
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GK+ LLI S + F Y+ T+ ++ I I+V+G++V+L +WDTAGQE + +
Sbjct: 15 ACGKTCLLIVNSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQEDYDRLRPLS 73
Query: 111 YRGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL 150
Y T +++ + + S ++ N+ ++W E+++ C V IL
Sbjct: 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F Y+ T+ ++ + T+ + GE L ++DTAG E + +
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNC 143
Y T +V + V S +F NVK +W+ EI ++C
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GK+ LLI S + F Y+ T+ ++ + I+V+G++V+L +WDTAGQE + +
Sbjct: 15 ACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 73
Query: 111 YRGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL 150
Y T +++ + + S ++ N+ ++W E+++ C V IL
Sbjct: 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F G YI T+ ++ + V+G+ V L +WDTAG E + +
Sbjct: 165 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLRPLS 223
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S +F +V+ +W E+ ++C IL G +L L
Sbjct: 224 YPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDL 271
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GK+ LLI S + F Y+ T+ ++ + I+V+G++V+L +WDTAGQE + +
Sbjct: 13 ACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL 150
Y T +++ + + S ++ N+ ++W E+++ C V IL
Sbjct: 72 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 112
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GK+ LLI S + F Y+ T+ ++ + I+V+G++V+L +WDTAGQE + +
Sbjct: 13 ACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL 150
Y T +++ + + S ++ N+ ++W E+++ C V IL
Sbjct: 72 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 112
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F Y+ T+ ++ + T+ + GE L ++DTAG E + +
Sbjct: 17 AVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLEDYDRLRPLS 75
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNC 143
Y T +V + V S +F NVK +W+ EI ++C
Sbjct: 76 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 109
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F G YI T+ ++ + V+G+ V L +WDTAG E + +
Sbjct: 165 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLRPLS 223
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S +F +V+ +W E+ ++C IL G +L L
Sbjct: 224 YPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDL 271
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F G YI T+ ++ + V+G+ V L +WDTAG E + +
Sbjct: 165 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLRPLS 223
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y T ++ + + S +F +V+ +W E+ ++C IL G +L L
Sbjct: 224 YPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDL 271
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GK+ LLI FS + F Y+ T+ ++ I I+V+G++V+L +WDTAGQE + +
Sbjct: 35 ACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQEDYDRLRPLS 93
Query: 111 YRGTHGVIVVYDVTSGETFANV-KRWLHEIEN 141
Y T +++ + + S ++ N+ ++W E+++
Sbjct: 94 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 125
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GK+ LLI S + F Y+ T+ ++ + I+V+G++V+L +WDTAGQE + +
Sbjct: 15 ACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 73
Query: 111 YRGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL 150
Y T +++ + + S ++ N+ ++W E+++ C V IL
Sbjct: 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GK+ LLI S + F Y+ T+ ++ + I+V+G++V+L +WDTAGQE + +
Sbjct: 15 ACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLS 73
Query: 111 YRGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL 150
Y T +++ + + S ++ N+ ++W E+++ C V IL
Sbjct: 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQ 100
S+K + L VGKSSL I+F + F SY TI F + I VNG++ LQ+ DTAGQ
Sbjct: 6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQ 64
Query: 101 ERFRTITSTYYRGTHGVIVVYDVTSGETFANVK 133
+ + TY +G I+VY VTS ++F +K
Sbjct: 65 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIK 97
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQ 100
S+K + L VGKSSL I+F + F SY TI F + I VNG++ LQ+ DTAGQ
Sbjct: 6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQ 64
Query: 101 ERFRTITSTYYRGTHGVIVVYDVTSGETFANVK 133
+ + TY +G I+VY VTS ++F +K
Sbjct: 65 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIK 97
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQ 100
S+K + L VGKSSL I+F + F SY TI F + I VNG++ LQ+ DTAGQ
Sbjct: 1 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQ 59
Query: 101 ERFRTITSTYYRGTHGVIVVYDVTSGETFANVK 133
+ + TY +G I+VY VTS ++F +K
Sbjct: 60 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIK 92
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L ++F + F Y T ++ + + ++GE+V++ I DTAGQE + I Y
Sbjct: 24 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNY 82
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEI 139
+R G + V+ +T E+FA + +I
Sbjct: 83 FRSGEGFLCVFSITEMESFAATADFREQI 111
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L ++F + F Y T ++ + + ++GE+V++ I DTAGQE + I Y
Sbjct: 28 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNY 86
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEI 139
+R G + V+ +T E+FA + +I
Sbjct: 87 FRSGEGFLCVFSITEMESFAATADFREQI 115
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L ++F + F Y T ++ + + ++GE+V++ I DTAGQE + I Y
Sbjct: 16 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNY 74
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEI 139
+R G + V+ +T E+FA + +I
Sbjct: 75 FRSGEGFLCVFSITEMESFAATADFREQI 103
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L ++F + F Y T ++ + + ++GE+V++ I DTAGQE + I Y
Sbjct: 14 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNY 72
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEI 139
+R G + V+ +T E+FA + +I
Sbjct: 73 FRSGEGFLCVFSITEMESFAATADFREQI 101
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 70/139 (50%), Gaps = 9/139 (6%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LL+ FS +Y+ T+ +F + E+ L +WDTAGQE + +
Sbjct: 33 AVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLS 91
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGLNQRSIDEV---- 164
Y + V++ + V + +F N+ +W EI++ + +L GL++ L + D+V
Sbjct: 92 YADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQE 151
Query: 165 --NLCHRGSVDGSVESTSV 181
+LC + +E++SV
Sbjct: 152 GDDLCQKLGCVAYIEASSV 170
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 22/127 (17%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F G YI T+ ++ + V+G+ V L +WDTAGQE + +
Sbjct: 15 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPLS 73
Query: 111 YRGTHG-------------------VIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL 150
Y T G ++ + + S +F NV+ +W E+ ++C IL
Sbjct: 74 YPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 133
Query: 151 -GLRLGL 156
G +L L
Sbjct: 134 VGTKLDL 140
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 20/172 (11%)
Query: 23 AREQIPTGRGK--NGPTHIFSQKSSFLQLVG---VGKSSLLIRFSDNTFSGSYITTIGVD 77
A + TG GK NG +K+ + +VG VGK+ LL+ FS +Y+ T+ +
Sbjct: 5 AFSDMNTGAGKIENG------KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFEN 58
Query: 78 FKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVK-RWL 136
F + E+ L +WDTAGQE + + Y + V++ + V + +F N+ +W
Sbjct: 59 FS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWE 117
Query: 137 HEIENNCEVVNRIL-GLRLGLNQRSIDEV------NLCHRGSVDGSVESTSV 181
EI++ + +L GL++ L + D+V +LC + +E++SV
Sbjct: 118 PEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSV 169
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GK+ LLI S + F Y+ T+ ++ + I+V+G++V+L +WDTAG E + +
Sbjct: 18 ACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLS 76
Query: 111 YRGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL 150
Y T +++ + + S ++ N+ ++W E+++ C V IL
Sbjct: 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 117
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GK+ LLI S F Y+ T+ ++ + ++V+G +V+L +WDTAGQE + +
Sbjct: 20 ACGKTCLLIVNSKGQFPEVYVPTVFENY-VADVEVDGRRVELALWDTAGQEDYDRLRPLS 78
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156
Y ++ V++ + + ++ NV+ +W+ E+ + C+ V IL G ++ L
Sbjct: 79 YPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDL 126
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 4/115 (3%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y
Sbjct: 14 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQY 72
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIE--NNCEVVNRIL-GLRLGLNQRSID 162
R G + V+ + + ++F ++ + +I+ + E V +L G + L R++D
Sbjct: 73 MRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVD 127
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQ 100
S+K + L VGKSSL I+F + F S TI F + I VNG++ LQ+ DTAGQ
Sbjct: 4 SRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFT-KLITVNGQEYHLQLVDTAGQ 62
Query: 101 ERFRTITSTYYRGTHGVIVVYDVTSGETFANVK 133
+ + TY +G I+VY VTS ++F +K
Sbjct: 63 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIK 95
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 50 VGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITST 109
VGVGKS+L ++F F Y TI ++ + ++V+ ++ L+I DTAG E+F +
Sbjct: 14 VGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTAMRDL 72
Query: 110 YYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
Y + G +VY +T+ TF +++ +I
Sbjct: 73 YMKNGQGFALVYSITAQSTFNDLQDLREQI 102
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L ++F + F Y T ++ + + ++GE+V++ I DTAG E + I Y
Sbjct: 16 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLEDYAAIRDNY 74
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEI 139
+R G + V+ +T E+FA + +I
Sbjct: 75 FRSGEGFLCVFSITEMESFAATADFREQI 103
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 4/115 (3%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y
Sbjct: 14 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQY 72
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIE--NNCEVVNRIL-GLRLGLNQRSID 162
R G + V+ + + ++F ++ + +I+ + E V +L G + L R++D
Sbjct: 73 MRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVD 127
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y
Sbjct: 13 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
R G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y
Sbjct: 13 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
R G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y
Sbjct: 13 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
R G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 52 VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYY 111
GK++LL F+ + F +Y+ T+ ++ + +++ ++++L +WDT+G + + Y
Sbjct: 39 CGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSY 97
Query: 112 RGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL 150
+ V++ +D++ ET +V K+W EI+ C +L
Sbjct: 98 PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 137
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 52 VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYY 111
GK++LL F+ + F +Y+ T+ ++ + +++ ++++L +WDT+G + + Y
Sbjct: 34 CGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSY 92
Query: 112 RGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL 150
+ V++ +D++ ET +V K+W EI+ C +L
Sbjct: 93 PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 132
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKSSL++RF TF SYI T+ ++ + I + LQI DT G +F +
Sbjct: 13 GVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQRSIDE 163
H I+VY +TS ++ +K +I CE+ + + + L DE
Sbjct: 72 ISKGHAFILVYSITSRQSLEELKPIYEQI---CEIKGDVESIPIMLVGNKCDE 121
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L ++F F Y TI ++ + ++V+ ++ L+I DTAG E+F + Y
Sbjct: 13 GVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTAMRDLY 71
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEI 139
+ G +VY +T+ TF +++ +I
Sbjct: 72 MKNGQGFALVYSITAQSTFNDLQDLREQI 100
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L ++F F Y TI ++ + ++V+ ++ L+I DTAG E+F + Y
Sbjct: 13 GVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLY 71
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEI 139
+ G +VY +T+ TF +++ +I
Sbjct: 72 MKNGQGFALVYSITAQSTFNDLQDLREQI 100
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L ++F + F Y T ++ + + ++GE+V++ I DTAG E + I Y
Sbjct: 13 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLEDYAAIRDNY 71
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEI 139
+R G ++V+ +T E+F + +I
Sbjct: 72 FRSGEGFLLVFSITEHESFTATAEFREQI 100
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L ++F + F Y T ++ + + ++GE+V++ I DTAG E + I Y
Sbjct: 17 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLEDYAAIRDNY 75
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEI 139
+R G ++V+ +T E+F + +I
Sbjct: 76 FRSGEGFLLVFSITEHESFTATAEFREQI 104
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 52 VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYY 111
GK++LL F+ + F +Y+ T+ ++ + +++ ++++L +WDT+G + + Y
Sbjct: 18 CGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSY 76
Query: 112 RGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL 150
+ V++ +D++ ET +V K+W EI+ C +L
Sbjct: 77 PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 116
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y
Sbjct: 13 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
R G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAGRTVE 126
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L ++F F Y TI ++ + ++V+ ++ L+I DTAG E+F + Y
Sbjct: 13 GVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLY 71
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEI 139
+ G +VY +T+ TF +++ +I
Sbjct: 72 MKNGQGFALVYSITAQSTFNDLQDLREQI 100
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LL+ ++++ F Y+ T+ D ++ V G++ L ++DTAGQE + +
Sbjct: 28 AVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLS 86
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL 150
Y T ++ + V + +F NVK W+ E++ V +L
Sbjct: 87 YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLL 127
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 37 THIFSQKSSFLQLVGV---GKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVKL 92
+ IF K + ++G+ GK+++L + G +TTI V F + T V + VK
Sbjct: 6 SKIFGNKEMRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVET--VTYKNVKF 59
Query: 93 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
+WD GQ++ R + YY GT G+I V D + ++ LH I N+ E+ + I+
Sbjct: 60 NVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 117
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 46 FLQLVGVGKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVKLQIWDTAGQERFR 104
L L GK+++L + G +TTI V F + T V + VK +WD GQ++ R
Sbjct: 327 MLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVET--VTYKNVKFNVWDVGGQDKIR 380
Query: 105 TITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
+ YY GT G+I V D + ++ LH I N+ E+ + I+
Sbjct: 381 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 426
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 37 THIFSQKSSFLQLVGV---GKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVKL 92
+ IF K + ++G+ GK+++L + G +TTI V F + T V + VK
Sbjct: 5 SKIFGNKEMRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVET--VTYKNVKF 58
Query: 93 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
+WD GQ++ R + YY GT G+I V D + ++ LH I N+ E+ + I+
Sbjct: 59 NVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 116
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++FA++ + +I +++ +V ++G + L R++D
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVD 144
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 46 FLQLVGVGKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVKLQIWDTAGQERFR 104
L L GK+++L + G +TTI V F + T V + VK +WD GQ++ R
Sbjct: 5 MLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVET--VTYKNVKFNVWDVGGQDKIR 58
Query: 105 TITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
+ YY GT G+I V D + ++ LH I N+ E+ + I+
Sbjct: 59 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 104
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 46 FLQLVGVGKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVKLQIWDTAGQERFR 104
L L GK+++L + G +TTI V F + T V + VK +WD GQ++ R
Sbjct: 5 MLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVET--VTYKNVKFNVWDVGGQDKIR 58
Query: 105 TITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
+ YY GT G+I V D + ++ LH I N+ E+ + I+
Sbjct: 59 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 104
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+F + F Y TI D + V+G +L I DTAGQE F + Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI 139
HG ++V+ + ++F V + +I
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQI 106
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L ++F TF Y TI DF + I+V+ L+I DTAG E+F ++ Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI 139
G I+VY + + ++F ++K +I
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQI 100
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 50 VGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITST 109
V GK+++L + + + +Y+ T+ ++ ++ ++V+L +WDT+G + +
Sbjct: 20 VQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPL 78
Query: 110 YYRGTHGVIVVYDVTSGETF-ANVKRWLHEIENNCEVVNRIL 150
Y + V++ +D++ ET + +K+W EI + C +L
Sbjct: 79 CYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLL 120
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G R L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLAARTVE 126
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 50 VGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITST 109
V GK+++L + + + +Y+ T+ ++ ++ ++V+L +WDT+G + +
Sbjct: 19 VQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPL 77
Query: 110 YYRGTHGVIVVYDVTSGETF-ANVKRWLHEIENNCEVVNRIL 150
Y + V++ +D++ ET + +K+W EI + C +L
Sbjct: 78 CYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLL 119
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 50 VGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITST 109
V GK+++L + + + +Y+ T+ ++ ++ ++V+L +WDT+G + +
Sbjct: 36 VQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLWDTSGSPYYDNVRPL 94
Query: 110 YYRGTHGVIVVYDVTSGETF-ANVKRWLHEIENNCEVVNRIL 150
Y + V++ +D++ ET + +K+W EI + C +L
Sbjct: 95 CYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLL 136
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 52 VGKSSLLIRFSD--NTFSGSYITTIGVDFKIRTIDVNGEKVKLQIW--DTAGQERFRTIT 107
VGKS+L+ F+ + F Y T GV+ + + + V ++++ DTAG + ++
Sbjct: 31 VGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQI 90
Query: 108 STYYRGTHGVIVVYDVTSGETFANVKRWLHEIEN 141
S Y+ G + I+V+DV+S E+F + K W +++
Sbjct: 91 SQYWNGVYYAILVFDVSSMESFESCKAWFELLKS 124
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 47 LQLVGVGKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVKLQIWDTAGQERFRT 105
L L GK+++L + G +TTI V F + T V + VK +WD GQ++ R
Sbjct: 6 LGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVET--VTYKNVKFNVWDVGGQDKIRP 59
Query: 106 ITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
+ YY GT G+I V D + ++ LH I N+ E + I+
Sbjct: 60 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAII 104
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 114 THGVIVVYDVTSGETFANVKRWLHEIE--NNCEVVNRIL-GLRLGLNQRSID 162
G + V+ + + ++F ++ + +I+ + E V +L G + L R++D
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVD 127
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 114 THGVIVVYDVTSGETFANVKRWLHEIE--NNCEVVNRIL-GLRLGLNQRSID 162
G + V+ + + ++F ++ + +I+ + E V +L G + L R++D
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVD 127
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+F F Y TI D ++ +++ + L + DTAGQE F + Y R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 114 THGVIVVYDVTSGETFANVKRW 135
G ++VY VT +F +V R+
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRF 111
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+F F Y TI ++ T +++ + L + DTAGQE F + Y R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSYRKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 114 THGVIVVYDVTSGETFANVKRW 135
G ++VY VT +F +V R+
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRF 111
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 131
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 131
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+F F Y TI D ++ +++ + L + DTAGQE F + Y R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 114 THGVIVVYDVTSGETFANVKRW 135
G ++VY VT +F +V R+
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRF 111
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 10/118 (8%)
Query: 37 THIFSQKSSFLQLVGV---GKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVKL 92
+ IF K + ++G+ GK+++L + G +TTI V F + T V + VK
Sbjct: 6 SKIFGNKEMRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVET--VTYKNVKF 59
Query: 93 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
+WD G ++ R + YY GT G+I V D + ++ LH I N+ E+ + I+
Sbjct: 60 NVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 117
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+F F Y TI D ++ +++ + L + DTAGQE F + Y R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 114 THGVIVVYDVTSGETFANVKRW 135
G ++VY VT +F +V R+
Sbjct: 85 GDGFLIVYSVTDKASFEHVDRF 106
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 133
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAG E + + Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 114 THGVIVVYDVTSGETFANVKRWLHEIE--NNCEVVNRIL-GLRLGLNQRSID 162
G + V+ + + ++F ++ + +I+ + E V +L G + L R++D
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVD 144
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 46 FLQLVGVGKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVKLQIWDTAGQERFR 104
L L GK+++L + G +TTI V F + T V + VK +WD G ++ R
Sbjct: 8 MLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVET--VTYKNVKFNVWDVGGLDKIR 61
Query: 105 TITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
+ YY GT G+I V D + ++ LH I N+ E+ + I+
Sbjct: 62 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 107
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y +I ++ + + ++GE L I DTAGQE + + Y R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 81 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 132
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 46 FLQLVGVGKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVKLQIWDTAGQERFR 104
L L GK+++L + G +TTI V F + T V + VK +WD G ++ R
Sbjct: 7 MLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVET--VTYKNVKFNVWDVGGLDKIR 60
Query: 105 TITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
+ YY GT G+I V D + ++ LH I N+ E+ + I+
Sbjct: 61 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 106
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVE 126
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 41 SQKSSFLQLVGV---GKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDT 97
S++ L LVG+ GK++ + + FS I T+G + + V V ++IWD
Sbjct: 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMR----KVTKGNVTIKIWDI 74
Query: 98 AGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
GQ RFR++ Y RG + ++ + D E + LH +
Sbjct: 75 GGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNL 116
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y +I ++ + + ++GE L I DTAGQE + + Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
K++L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F + TI ++ + + ++GE L I DTAGQE + + Y R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAG+E + + Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DT GQE + + Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAG E + + Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 39 IFSQKSSFLQLVGV---GKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIW 95
+F ++ L LVG+ GK++ + + F+ I T+G F +R I +KL W
Sbjct: 26 LFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--W 81
Query: 96 DTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
D GQ RFR++ Y RG ++ + D E K LH +
Sbjct: 82 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNL 125
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DT GQE + + Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Query: 52 VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYY 111
VGK+SL +F + FS Y T+ + + + + ++ L + DTAGQ+ + + ++
Sbjct: 35 VGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAGQDEYSILPYSFI 93
Query: 112 RGTHGVIVVYDVTSGETFANVK---RWLHEIENNCEVVNRILGLRLGLN-QRSIDEVN 165
G HG ++VY VTS +F ++ + LHE V ++G + L+ +R + V
Sbjct: 94 IGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVE 151
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTA QE + + Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAARTVE 126
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 14/112 (12%)
Query: 37 THIFSQKSSFLQLVGV---GKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVKL 92
+++F K + +VG+ GK+++L + G ITTI + F + T+ + +
Sbjct: 10 SNLFGNKEMRILMVGLDGAGKTTVLYKLK----LGEVITTIPTIGFNVETVQY--KNISF 63
Query: 93 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTS----GETFANVKRWLHEIE 140
+WD GQ+R R++ YYR T GVI V D GE ++R L+E E
Sbjct: 64 TVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDE 115
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTA QE + + Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAARTVE 126
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 41 SQKSSFLQLVGV---GKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDT 97
S++ L LVG+ GK++ + + F+ I T+G F +R I +KL WD
Sbjct: 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDI 74
Query: 98 AGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
GQ RFR++ Y RG ++ + D E K LH +
Sbjct: 75 GGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNL 116
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 14/112 (12%)
Query: 37 THIFSQKSSFLQLVGV---GKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVKL 92
+++F K + +VG+ GK+++L + G ITTI + F + T+ + +
Sbjct: 10 SNLFGNKEMRILMVGLDGAGKTTVLYKLK----LGEVITTIPTIGFNVETVQY--KNISF 63
Query: 93 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTS----GETFANVKRWLHEIE 140
+WD GQ+R R++ YYR T GVI V D GE ++R L+E E
Sbjct: 64 TVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDE 115
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAG E + + Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 131
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAG E + + Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 37 THIFSQKSSFLQLVGV---GKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVKL 92
+ +F++K + +VG+ GK+++L + G +TTI + F + T++ + +
Sbjct: 13 SRLFAKKEMRILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVETVEY--KNISF 66
Query: 93 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
+WD GQ++ R + Y++ T G+I V D + + LH + N E+ + +L
Sbjct: 67 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL 124
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAG E + + Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 49 LVGVGKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVKLQIWDTAGQERFRTIT 107
L G GK+++L + G ITTI + F + T+ + + +WD GQ+R R++
Sbjct: 8 LDGAGKTTVLYKLK----LGEVITTIPTIGFNVETVQY--KNISFTVWDVGGQDRIRSLW 61
Query: 108 STYYRGTHGVIVVYDVTS----GETFANVKRWLHEIE 140
YYR T GVI V D GE ++R L+E E
Sbjct: 62 RHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDE 98
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAG E + + Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAG E + + Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F Y TI ++ + + ++GE L I DTAG E + + Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI---ENNCEVVNRILGLRLGLNQRSID 162
G + V+ + + ++F ++ ++ +I +++ +V ++G + L R+++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE 126
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 39 IFSQKSSFLQLVGV---GKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVKLQI 94
+F +K + +VG+ GK+++L + G +TTI + F + T++ + +
Sbjct: 12 LFQKKDVRILMVGLDAAGKTTILYKVK----LGEVVTTIPTIGFNVETVEF--RNISFTV 65
Query: 95 WDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
WD GQ++ R + YY T G+I V D E + + LH + N E+ + I+
Sbjct: 66 WDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAII 121
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+ N F TI ++ + + ++GE L I DTAGQE + + Y R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 114 THGVIVVYDVTSGETFANVKRWLHEIE 140
G + V+ + + ++F ++ ++ +I+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 10/118 (8%)
Query: 37 THIFSQKSSFLQLVGV---GKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVKL 92
+ + +K + +VG+ GK+S+L + G +TTI + F + T++ + +
Sbjct: 10 SKLLGKKEMRILMVGLDAAGKTSILYKLK----LGEIVTTIPTIGFNVETVEY--KNISF 63
Query: 93 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
+WD GQ++ R + YY+ T +I V D + + L ++ N E+ N IL
Sbjct: 64 TVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAIL 121
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KSSL++RF TF +YI TI ++ + I + LQI DT G +F +
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 114 THGVIVVYDVTSG---ETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSID 162
H I+V+ VTS E + + + +I+ + E + +L G + QR +D
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVD 132
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 54 KSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113
KS+L I+F + F Y TI + + + ++ +L I DTAGQE F + Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 114 THGVIVVYDVTSGETFANVKRWLHEI 139
G ++V+ VT +F + ++ +I
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQI 102
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 7/113 (6%)
Query: 50 VGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITST 109
GVGKS+L++RF F Y T+ ++ + ++ E V ++I DTAGQE TI
Sbjct: 37 AGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQE--DTIQRE 93
Query: 110 -YYRGTHGVIVVYDVTSGETFANV---KRWLHEIENNCEVVNRILGLRLGLNQ 158
+ R G ++VYD+T +F V K L EI+ V ++G + L+
Sbjct: 94 GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 146
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 46 FLQLVGVGKSSLLIRFSDNTFSGSYITTIG--VDFKIRTIDVNGEKVKLQIWDTAGQERF 103
L L GK+++L +F+ G I TI + F I+T++ G KL IWD GQ+
Sbjct: 21 MLGLDNAGKTTILKKFN-----GEDIDTISPTLGFNIKTLEHRG--FKLNIWDVGGQKSL 73
Query: 104 RTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
R+ Y+ T G+I V D + + +R L +
Sbjct: 74 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 109
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 46 FLQLVGVGKSSLLIRFSDNTFSGSYITTIG--VDFKIRTIDVNGEKVKLQIWDTAGQERF 103
L L GK+++L +F+ G + TI + F I+T++ G KL IWD GQ+
Sbjct: 23 MLGLDNAGKTTILKKFN-----GEDVDTISPTLGFNIKTLEHRG--FKLNIWDVGGQKSL 75
Query: 104 RTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
R+ Y+ T G+I V D + + +R L +
Sbjct: 76 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 111
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 46 FLQLVGVGKSSLLIRFSDNTFSGSYITTIG--VDFKIRTIDVNGEKVKLQIWDTAGQERF 103
L L GK+++L +F+ G + TI + F I+T++ G KL IWD GQ+
Sbjct: 23 MLGLDNAGKTTILKKFN-----GEDVDTISPTLGFNIKTLEHRG--FKLNIWDVGGQKSL 75
Query: 104 RTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
R+ Y+ T G+I V D + + +R L +
Sbjct: 76 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 111
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 36 PTHIFSQKSSFLQLVGV---GKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVK 91
P +F +K + +VG+ GK+++L + G +TTI + F + T++ + +
Sbjct: 157 PRGLFGKKEMRILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVETVEY--KNIS 210
Query: 92 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGE 127
+WD GQ++ R + Y++ T G+I V D E
Sbjct: 211 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 246
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 37 THIFSQKSSFLQLVGV---GKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVKL 92
+++F K + +VG+ GK+++L + G ITTI + F + + +
Sbjct: 10 SNLFGNKEMRILMVGLDGAGKTTVLYKLK----LGEVITTIPTIGFNVECVQYC--NISF 63
Query: 93 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTS----GETFANVKRWLHEIE 140
+WD GQ+R R++ YY T GVI V D GE ++R L+E E
Sbjct: 64 TVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDE 115
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 10/107 (9%)
Query: 37 THIFSQKSSFLQLVGV---GKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVKL 92
+ +F +K + +VG+ GK+++L + G +TTI + F + T++ + +
Sbjct: 10 SRLFGKKQMRILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVETVEY--KNICF 63
Query: 93 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
+WD GQ+R R + Y++ T G+I V D E V L ++
Sbjct: 64 TVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKM 110
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 52 VGKSSLLIRFSDNTFSGSYITTIG--VDFKIRTIDVNGEKVKLQIWDTAGQERFRTITST 109
GK+++L +F+ G + TI + F I+T++ G KL IWD GQ+ R+
Sbjct: 29 AGKTTILKKFN-----GEDVDTISPTLGFNIKTLEHRG--FKLNIWDVGGQKSLRSYWRN 81
Query: 110 YYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
Y+ T G+I V D + + +R L +
Sbjct: 82 YFESTDGLIWVVDSADRQRXQDCQRELQSL 111
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 10/118 (8%)
Query: 37 THIFSQKSSFLQLVGV---GKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVKL 92
+ IF +K + +VG+ GK+++L + G +TTI + F + T++ + +
Sbjct: 22 SRIFGKKQMRILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVETVEY--KNICF 75
Query: 93 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
+WD GQ++ R + Y++ T G+I V D E L ++ E+ + +L
Sbjct: 76 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVL 133
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 10/128 (7%)
Query: 39 IFSQKSSFLQLVGV---GKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIW 95
+F+ + + +VG+ GK+++L +FS N + TIG + + I +N + +W
Sbjct: 11 LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSN--VEEIVINN--TRFLMW 65
Query: 96 DTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLG 155
D GQE R+ +TYY T VIVV D T E + + L+++ + ++ R GL +
Sbjct: 66 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL--RKAGLLIF 123
Query: 156 LNQRSIDE 163
N++ + E
Sbjct: 124 ANKQDVKE 131
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 10/128 (7%)
Query: 39 IFSQKSSFLQLVGV---GKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIW 95
+F+ + + +VG+ GK+++L +FS N + TIG + + I +N + +W
Sbjct: 11 LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSN--VEEIVINN--TRFLMW 65
Query: 96 DTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLG 155
D GQE R+ +TYY T VIVV D T E + + L+++ + ++ R GL +
Sbjct: 66 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL--RKAGLLIF 123
Query: 156 LNQRSIDE 163
N++ + E
Sbjct: 124 ANKQDVKE 131
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 7/116 (6%)
Query: 49 LVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITS 108
L GK+++L +FS N + TIG + + I +N + +WD GQE R+ +
Sbjct: 30 LDNAGKTTILYQFSMNEVVHTS-PTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWN 84
Query: 109 TYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQRSIDEV 164
TYY T VIVV D T E + + L+++ + ++ R GL + N++ + E
Sbjct: 85 TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL--RKAGLLIFANKQDVKEC 138
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 39 IFSQKSSFLQLVGV---GKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVKLQI 94
+F +K + +VG+ GK+++L + G +TTI + F + T++ + + +
Sbjct: 12 LFGKKEMRILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVETVEY--KNISFTV 65
Query: 95 WDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
WD GQ++ R + Y++ T G+I V D E + L + E+ + +L
Sbjct: 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 121
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 39 IFSQKSSFLQLVGV---GKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVKLQI 94
+F +K + +VG+ GK+++L + G +TTI + F + T++ + + +
Sbjct: 11 LFGKKEMRILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVETVEY--KNISFTV 64
Query: 95 WDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
WD GQ++ R + Y++ T G+I V D E + L + E+ + +L
Sbjct: 65 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 120
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 7/116 (6%)
Query: 49 LVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITS 108
L GK+++L +FS N + TIG + + I +N + +WD GQE R+ +
Sbjct: 29 LDNAGKTTILYQFSMNEVVHTS-PTIGSN--VEEIVIN--NTRFLMWDIGGQESLRSSWN 83
Query: 109 TYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQRSIDEV 164
TYY T VIVV D T E + + L+++ + ++ R GL + N++ + E
Sbjct: 84 TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL--RKAGLLIFANKQDVKEC 137
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 46 FLQLVGVGKSSLLIRFSDNTFSGSYITT-IGVDFKIRTIDVNGEKVKLQIWDTAGQERFR 104
L L G GK+++L R G +TT + F + T+ + +KL +WD GQ R
Sbjct: 23 ILGLDGAGKTTILYRLQ----IGEVVTTKPTIGFNVETLSY--KNLKLNVWDLGGQTSIR 76
Query: 105 TITSTYYRGTHGVIVVYDVTSGETFANVKRWLH 137
YY T VI V D T + + + LH
Sbjct: 77 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELH 109
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 46 FLQLVGVGKSSLLIRFSDNTFSGSYITTIG--VDFKIRTIDVNGEKVKLQIWDTAGQERF 103
L L GK+++L +F+ G + TI + F I+T++ G KL IWD G +
Sbjct: 6 MLGLDNAGKTTILKKFN-----GEDVDTISPTLGFNIKTLEHRG--FKLNIWDVGGLKSL 58
Query: 104 RTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
R+ Y+ T G+I V D + + +R L +
Sbjct: 59 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 94
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 46 FLQLVGVGKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVKLQIWDTAGQERFR 104
L L G GK+++L R G +TTI + F + T V + +K Q+WD GQ R
Sbjct: 7 ILGLDGAGKTTILYRLQ----VGEVVTTIPTIGFNVET--VTYKNLKFQVWDLGGQTSIR 60
Query: 105 TITSTYYRGTHGVIVVYD 122
YY T VI V D
Sbjct: 61 PYWRCYYSNTDAVIYVVD 78
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 51 GVGKSSLLIRFSDNTFS--GSYITTIGVDFKIRTIDVNGEKVK---LQIWDTAGQERFRT 105
G GK++LL + S G T+G+D K I + ++ + L +WD AG+E F +
Sbjct: 12 GSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS 71
Query: 106 ITSTYYRGTHGVIVVYDVTSGETFANV-KRWLHEIE 140
+ + VYD++ G+ + K WL I+
Sbjct: 72 THPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIK 107
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 51 GVGKSSLLIRFSDNTFS--GSYITTIGVDFKIRTIDVNGEKVK---LQIWDTAGQERFRT 105
G GK++LL + S G T+G+D K I + ++ + L +WD AG+E F +
Sbjct: 10 GSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS 69
Query: 106 ITSTYYRGTHGVIVVYDVTSGETFANV-KRWLHEIE 140
+ + VYD++ G+ + K WL I+
Sbjct: 70 THPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIK 105
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 49 LVGVGKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVKLQIWDTAGQERFRTIT 107
L GK+++L + G +TTI + F + T++ + + +WD GQ++ R +
Sbjct: 8 LDAAGKTTILYKLK----LGEIVTTIPTIGFNVETVEY--KNISFTVWDVGGQDKIRPLW 61
Query: 108 STYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
Y++ T G+I V D E + L + E+ + +L
Sbjct: 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 104
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 46 FLQLVGVGKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVKLQIWDTAGQERFR 104
L L G GK+++L R G +TTI + F + T V + +K Q+WD G R
Sbjct: 9 ILGLDGAGKTTILYRLQ----VGEVVTTIPTIGFNVET--VTYKNLKFQVWDLGGLTSIR 62
Query: 105 TITSTYYRGTHGVIVVYD 122
YY T VI V D
Sbjct: 63 PYWRCYYSNTDAVIYVVD 80
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 46 FLQLVGVGKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVKLQIWDTAGQERFR 104
L L G GK+++L R G +TTI + F + T V + +K Q+WD G R
Sbjct: 12 ILGLDGAGKTTILYRLQ----VGEVVTTIPTIGFNVET--VTYKNLKFQVWDLGGLTSIR 65
Query: 105 TITSTYYRGTHGVIVVYD 122
YY T VI V D
Sbjct: 66 PYWRCYYSNTDAVIYVVD 83
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 46 FLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT 105
L L GK++LL + + S +IT F I+++ G KL +WD GQ + R
Sbjct: 22 LLGLDNAGKTTLLKQLASEDIS--HITPTQ-GFNIKSVQSQG--FKLNVWDIGGQRKIRP 76
Query: 106 ITSTYYRGTHGVIVVYDVTSGETF 129
+Y+ T +I V D + F
Sbjct: 77 YWRSYFENTDILIYVIDSADRKRF 100
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 46 FLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT 105
L L GK++LL + + S +IT F I+++ G KL +WD GQ + R
Sbjct: 21 LLGLDNAGKTTLLKQLASEDIS--HITPTQ-GFNIKSVQSQG--FKLNVWDIGGQRKIRP 75
Query: 106 ITSTYYRGTHGVIVVYDVTSGETF 129
+Y+ T +I V D + F
Sbjct: 76 YWRSYFENTDILIYVIDSADRKRF 99
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Query: 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIG-VDFKIRTIDVNGEKVKLQIWDTAG 99
S + + L GK+++L + G +TTI + F + T++ + + +WD G
Sbjct: 2 SMRILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVETVEY--KNISFTVWDVGG 55
Query: 100 QERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
++ R + Y++ T G+I V D E + L + E+ + +L
Sbjct: 56 LDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 106
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 39 IFSQKSSFLQLVGV---GKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIW 95
+F + + +VG+ GK+++L +F N + TIG + + ++ + +W
Sbjct: 11 LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTS-PTIGSNVE----EIVVKNTHFLMW 65
Query: 96 DTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
D GQE R+ +TYY T +I+V D E A K L+ +
Sbjct: 66 DIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRM 109
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 46 FLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT 105
L L GK++LL + + S +IT F I+++ G KL +WD GQ + R
Sbjct: 9 LLGLDNAGKTTLLKQLASEDIS--HITPTQ-GFNIKSVQSQG--FKLNVWDIGGQRKIRP 63
Query: 106 ITSTYYRGTHGVIVVYDVTSGETF 129
+Y+ T +I V D + F
Sbjct: 64 YWRSYFENTDILIYVIDSADRKRF 87
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 46 FLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT 105
L L GK++LL + + S +IT F I+++ G KL +WD G + R
Sbjct: 9 LLGLDNAGKTTLLKQLASEDIS--HITPTQ-GFNIKSVQSQG--FKLNVWDIGGLRKIRP 63
Query: 106 ITSTYYRGTHGVIVVYDVTSGETF 129
+Y+ T +I V D + F
Sbjct: 64 YWRSYFENTDILIYVIDSADRKRF 87
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GKS+L ++F F Y + + V+ + V L++ DTA + R Y
Sbjct: 31 GAGKSALTVKFLTKRFISEYDPNLEDTYSSEET-VDHQPVHLRVMDTADLDTPRN-CERY 88
Query: 111 YRGTHGVIVVYDVTSGETFANVKRW-----LHEIENNCEVVNRILGLRLGLNQ 158
H +VVY V S ++F + + LH E + +LG +L + Q
Sbjct: 89 LNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 47 LQLVGVGKSSLLIRFS-DNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT 105
L L GK++++ + N S + + TIG F I + ++D +GQ R+R
Sbjct: 27 LGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKF--KSSSLSFTVFDMSGQGRYRN 82
Query: 106 ITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQRSI 161
+ YY+ +I V D + K L + N+ ++ +R + + N+ +
Sbjct: 83 LWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDL 138
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 53 GKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYR 112
GK++++ + S +IT V + + T + +V ++D G ++FR + TYY
Sbjct: 29 GKTTIINQVKPAQSSSKHITAT-VGYNVETFEKG--RVAFTVFDMGGAKKFRGLWETYYD 85
Query: 113 GTHGVIVVYD 122
VI V D
Sbjct: 86 NIDAVIFVVD 95
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 88 EKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVN 147
+ + ++WD GQ R Y+ T VI V D T + K L+ + + E+
Sbjct: 64 KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRK 123
Query: 148 RIL 150
+L
Sbjct: 124 SLL 126
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 68 GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYR 112
G YI+++ + + V ++Q+WD Q+R R +TS R
Sbjct: 147 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR 191
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 68 GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYR 112
G YI+++ + + V ++Q+WD Q+R R +TS R
Sbjct: 158 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR 202
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 68 GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYR 112
G YI+++ + + V ++Q+WD Q+R R +TS R
Sbjct: 67 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR 111
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 13/125 (10%)
Query: 31 RGKNGPTHIF--------SQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRT 82
RG NG + + S K FL L GK++LL D+ G ++ T+ + T
Sbjct: 17 RGSNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEELT 75
Query: 83 IDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENN 142
I + +D G E+ R + Y +G++ + D K L+ + +
Sbjct: 76 I----AGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTD 131
Query: 143 CEVVN 147
+ N
Sbjct: 132 ETISN 136
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER 102
K L GVGKS+L R G G + R+I V+GE+ L ++D Q+
Sbjct: 4 KVLLLGAPGVGKSAL-ARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDG 61
Query: 103 FRTITSTYYRGTHGVIVVYDVTSGETF 129
R + ++VY VT +F
Sbjct: 62 GRWLPGHCMAMGDAYVIVYSVTDKGSF 88
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER 102
K L GVGKS+L R G G + R+I V+GE+ L ++D Q+
Sbjct: 9 KVLLLGAPGVGKSAL-ARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDG 66
Query: 103 FRTITSTYYRGTHGVIVVYDVTSGETF 129
R + ++VY VT +F
Sbjct: 67 GRWLPGHCMAMGDAYVIVYSVTDKGSF 93
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER 102
K L GVGKS+L R G G + R+I V+GE+ L ++D Q+
Sbjct: 9 KVLLLGAPGVGKSAL-ARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDG 66
Query: 103 FRTITSTYYRGTHGVIVVYDVTSGETF 129
R + ++VY VT +F
Sbjct: 67 GRWLPGHCMAMGDAYVIVYSVTDKGSF 93
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITS-- 108
GVGK+SL F+ + +G D RT+ V+GE L + DT E+ S
Sbjct: 14 GVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQE 72
Query: 109 TYYRGTHGVIVVYDVTSGETFANV 132
+ +G ++VY + +F +
Sbjct: 73 SCLQGGSAYVIVYSIADRGSFESA 96
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 24/61 (39%)
Query: 84 DVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNC 143
+V G K + ++ GQ + RG G++ V D AN + + EN
Sbjct: 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLA 127
Query: 144 E 144
E
Sbjct: 128 E 128
>pdb|1I5P|A Chain A, Insecticidal Crystal Protein Cry2aa
Length = 633
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 33/74 (44%)
Query: 1 MDATPLVIRVKELYSPIRYVQGAREQIPTGRGKNGPTHIFSQKSSFLQLVGVGKSSLLIR 60
+ PLVIR ++L P+ Y Q + P+G ++ S + + ++ +I
Sbjct: 426 ISGVPLVIRNEDLTRPLHYNQIRNIESPSGTPGGARAYLVSVHNRKNNIYAANENGTMIH 485
Query: 61 FSDNTFSGSYITTI 74
+ ++G I+ I
Sbjct: 486 LAPEDYTGFTISPI 499
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 24/61 (39%)
Query: 84 DVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNC 143
+V G K + ++ GQ + RG G++ V D AN + + EN
Sbjct: 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESXRNXRENLA 127
Query: 144 E 144
E
Sbjct: 128 E 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,657,929
Number of Sequences: 62578
Number of extensions: 228278
Number of successful extensions: 1023
Number of sequences better than 100.0: 342
Number of HSP's better than 100.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 582
Number of HSP's gapped (non-prelim): 343
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)