BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1417
(188 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5U316|RAB35_RAT Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1
Length = 201
Score = 186 bits (471), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 87/100 (87%), Positives = 94/100 (94%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKSSLL+RF+DNTFSGSYITTIGVDFKIRT+++NGEKVKLQIWDTAGQERFRTITSTY
Sbjct: 18 GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
YRGTHGVIVVYDVTS E+F NVKRWLHEI NC+ V RIL
Sbjct: 78 YRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRIL 117
>sp|Q6PHN9|RAB35_MOUSE Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1
Length = 201
Score = 186 bits (471), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 87/100 (87%), Positives = 94/100 (94%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKSSLL+RF+DNTFSGSYITTIGVDFKIRT+++NGEKVKLQIWDTAGQERFRTITSTY
Sbjct: 18 GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
YRGTHGVIVVYDVTS E+F NVKRWLHEI NC+ V RIL
Sbjct: 78 YRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRIL 117
>sp|Q15286|RAB35_HUMAN Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1
Length = 201
Score = 186 bits (471), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 87/100 (87%), Positives = 94/100 (94%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKSSLL+RF+DNTFSGSYITTIGVDFKIRT+++NGEKVKLQIWDTAGQERFRTITSTY
Sbjct: 18 GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
YRGTHGVIVVYDVTS E+F NVKRWLHEI NC+ V RIL
Sbjct: 78 YRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRIL 117
>sp|Q01890|YPT1_PHYIN Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1
PE=3 SV=1
Length = 201
Score = 158 bits (399), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/101 (71%), Positives = 90/101 (89%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 18 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL 150
YRG HG+IVVYDVT E+F NVK+WLHEI+ CE VN++L
Sbjct: 78 YRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLL 118
>sp|P34139|RAB1A_DICDI Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A
PE=2 SV=2
Length = 202
Score = 154 bits (389), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 88/101 (87%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T+S S+I+TIGVDFKIRTI++NG+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 18 GVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL 150
YRG HG+IVVYDVT TF NV++WL EI+ CE VN++L
Sbjct: 78 YRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLL 118
>sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1
Length = 201
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 18 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL 150
YRG HG+IVVYDVT E++ANVK+WL EI+ E VN++L
Sbjct: 78 YRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLL 118
>sp|Q2HJH2|RAB1B_BOVIN Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1
Length = 201
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 18 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL 150
YRG HG+IVVYDVT E++ANVK+WL EI+ E VN++L
Sbjct: 78 YRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLL 118
>sp|Q5RE13|RAB1B_PONAB Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1
Length = 201
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 18 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL 150
YRG HG+IVVYDVT E++ANVK+WL EI+ E VN++L
Sbjct: 78 YRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLL 118
>sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1
Length = 201
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 18 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL 150
YRG HG+IVVYDVT E++ANVK+WL EI+ E VN++L
Sbjct: 78 YRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLL 118
>sp|P10536|RAB1B_RAT Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1
Length = 201
Score = 151 bits (381), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 69/101 (68%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRT+TS+Y
Sbjct: 18 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTVTSSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL 150
YRG HG+IVVYDVT E++ANVK+WL EI+ E VN++L
Sbjct: 78 YRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLL 118
>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1
Length = 205
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 88/101 (87%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 21 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 80
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL 150
YRG HG+IVVYDVT E+F NVK+WL EI+ E VN++L
Sbjct: 81 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 121
>sp|Q4R8X3|RAB1B_MACFA Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2
SV=1
Length = 201
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 18 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL 150
YRG HG+IVVYDVT E++ANVK+WL EI+ E VN++L
Sbjct: 78 YRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLL 118
>sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3
Length = 205
Score = 150 bits (379), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 88/101 (87%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 21 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 80
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL 150
YRG HG+IVVYDVT E+F NVK+WL EI+ E VN++L
Sbjct: 81 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 121
>sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3
Length = 205
Score = 150 bits (379), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 88/101 (87%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 21 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 80
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL 150
YRG HG+IVVYDVT E+F NVK+WL EI+ E VN++L
Sbjct: 81 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 121
>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3
Length = 205
Score = 150 bits (379), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 88/101 (87%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 21 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 80
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL 150
YRG HG+IVVYDVT E+F NVK+WL EI+ E VN++L
Sbjct: 81 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 121
>sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3
Length = 205
Score = 150 bits (379), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 88/101 (87%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 21 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 80
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL 150
YRG HG+IVVYDVT E+F NVK+WL EI+ E VN++L
Sbjct: 81 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 121
>sp|P22125|RAB1_DIPOM Ras-related protein ORAB-1 OS=Diplobatis ommata PE=2 SV=1
Length = 202
Score = 150 bits (378), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 88/101 (87%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 18 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL 150
YRG HG+IVVYDVT E+F NVK+WL EI+ E VN++L
Sbjct: 78 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 118
>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1
PE=3 SV=1
Length = 203
Score = 149 bits (377), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 69/101 (68%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRT++++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 18 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL 150
YRG HG+IVVYDVT E+F NVK+WL+EI+ E VN++L
Sbjct: 78 YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLL 118
>sp|P31584|YPTV1_VOLCA GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1
Length = 203
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/101 (68%), Positives = 88/101 (87%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRT++++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 18 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL 150
YRG HG+IVVYDVT E+F NVK+WL EI+ E VN++L
Sbjct: 78 YRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLL 118
>sp|P11620|YPT1_SCHPO GTP-binding protein ypt1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt1 PE=1 SV=2
Length = 203
Score = 147 bits (372), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/101 (68%), Positives = 86/101 (85%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRT ++ G+ VKLQIWDTAGQERFRTITS+Y
Sbjct: 18 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YRG HG+I+VYDVT ++F NVK+WL EI+ E VNR+L
Sbjct: 78 YRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLL 118
>sp|Q06AU7|RAB1B_PIG Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1
Length = 201
Score = 147 bits (372), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/101 (68%), Positives = 88/101 (87%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQER RTITS+Y
Sbjct: 18 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL 150
YRG HG+IVVYDVT E++ANVK+WL EI+ E VN++L
Sbjct: 78 YRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLL 118
>sp|P34140|RAB1B_DICDI Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B
PE=2 SV=2
Length = 206
Score = 147 bits (371), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 93/113 (82%), Gaps = 2/113 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 18 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL-GLRLGLNQRSI 161
YRG HG+IVVYDVT +F NVK+W+ EI+ C+ V R+L G + L ++ I
Sbjct: 78 YRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKI 130
>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3
Length = 205
Score = 147 bits (371), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 69/101 (68%), Positives = 87/101 (86%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 21 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 80
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL 150
YRG HG+IVVYDVT +F NVK+WL EI+ E VN++L
Sbjct: 81 YRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLL 121
>sp|P40392|RIC1_ORYSJ Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1
PE=2 SV=2
Length = 202
Score = 147 bits (370), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 68/101 (67%), Positives = 87/101 (86%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+++ SYI+TIGVDFKIRT++ +G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 18 GVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL 150
YRG HG+IVVYDVT E+F NVK+WL+EI+ E VN++L
Sbjct: 78 YRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLL 118
>sp|P33723|YPT1_NEUCR GTP-binding protein ypt1 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ypt-1
PE=3 SV=1
Length = 203
Score = 147 bits (370), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 69/101 (68%), Positives = 87/101 (86%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ VKLQIWDTAGQERFRTITS+Y
Sbjct: 18 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YRG HG+ VVYDVT ++F NVK+WL EI+ E VN++L
Sbjct: 78 YRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLL 118
>sp|Q05737|YPTM2_MAIZE GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1
Length = 203
Score = 146 bits (368), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 66/101 (65%), Positives = 87/101 (86%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+++ SYI+TIGVDFKIRT++ +G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 18 GVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL 150
YRG HG+I+VYDVT E+F NVK+WL+EI+ + VN++L
Sbjct: 78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLL 118
>sp|P28188|RAD2A_ARATH Ras-related protein RABD2a OS=Arabidopsis thaliana GN=RABD2A PE=1
SV=3
Length = 203
Score = 145 bits (365), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/101 (66%), Positives = 86/101 (85%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RFSD+++ SYI+TIGVDFKIRT++ +G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 18 GVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL 150
YRG HG+I+VYDVT E+F NVK+WL EI+ + VN++L
Sbjct: 78 YRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLL 118
>sp|Q9FPJ4|RAD2B_ARATH Ras-related protein RABD2b OS=Arabidopsis thaliana GN=RABD2B PE=2
SV=1
Length = 202
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/101 (66%), Positives = 86/101 (85%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+++ SYI+TIGVDFKIRT++ +G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 18 GVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL 150
YRG HG+IV YDVT E+F NVK+WL+EI+ E VN++L
Sbjct: 78 YRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLL 118
>sp|Q9SEH3|RAD2C_ARATH Ras-related protein RABD2c OS=Arabidopsis thaliana GN=RABD2C PE=1
SV=1
Length = 202
Score = 144 bits (364), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 67/101 (66%), Positives = 86/101 (85%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+++ SYI+TIGVDFKIRT++ +G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 18 GVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL 150
YRG HG+IV YDVT E+F NVK+WL+EI+ E VN++L
Sbjct: 78 YRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLL 118
>sp|O76173|RAB1C_DICDI Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C
PE=2 SV=1
Length = 201
Score = 144 bits (363), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 96/115 (83%), Gaps = 3/115 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS +L+RF+DN F+ SYI+TIGVDF IRTI+++G+K+KLQIWDTAGQERF+TIT++Y
Sbjct: 43 GVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSY 102
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN--NCEVVNRILGLRLGLN-QRSID 162
YRG HG+I+VYD+TS ++F ++KRWL +++ + V+ I+G + LN +R++D
Sbjct: 103 YRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLNSKRAVD 157
>sp|P16976|YPTM1_MAIZE GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2
Length = 208
Score = 144 bits (362), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 94/122 (77%), Gaps = 6/122 (4%)
Query: 47 LQLVG---VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERF 103
L L+G VGKS L+RF+D+++ SYI+TIGVDFKIRT++V G+ VKLQIWDTAGQERF
Sbjct: 11 LLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERF 70
Query: 104 RTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIEN--NCEVVNRILGLRLGLNQ-RS 160
RTITS+YYRG HG+I+VYD+T E+F NVK+WL EI+ N V ++G + L + R+
Sbjct: 71 RTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRA 130
Query: 161 ID 162
+D
Sbjct: 131 VD 132
>sp|P01123|YPT1_YEAST GTP-binding protein YPT1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT1 PE=1 SV=2
Length = 206
Score = 144 bits (362), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 67/121 (55%), Positives = 92/121 (76%), Gaps = 2/121 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RFSD+T++ YI+TIGVDFKI+T++++G+ VKLQIWDTAGQERFRTITS+Y
Sbjct: 18 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN--NCEVVNRILGLRLGLNQRSIDEVNLCH 168
YRG+HG+I+VYDVT E+F VK WL EI+ V+ ++G + L + + E ++
Sbjct: 78 YRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAK 137
Query: 169 R 169
Sbjct: 138 E 138
>sp|Q92928|RAB1C_HUMAN Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5
SV=2
Length = 201
Score = 143 bits (360), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 66/101 (65%), Positives = 87/101 (86%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+ ++ SYI+TIGVDFKI+TI+++G+ +KLQIWDTAGQERF TITS+Y
Sbjct: 18 GVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YRG HG +VVYDVT E++ANVK+WL EI+ + E VN++L
Sbjct: 78 YRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLL 118
>sp|Q54NU2|RAB1D_DICDI Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D
PE=1 SV=1
Length = 204
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/131 (52%), Positives = 100/131 (76%), Gaps = 3/131 (2%)
Query: 35 GPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQI 94
P H F K + GVGKS LL+RF+D++++ ++I+TIGVDFKI+T++++G+ +KLQI
Sbjct: 4 APEHDFFFKILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQI 63
Query: 95 WDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL-GL 152
WDTAGQERFRTITS+YYRG G+I+VYD T ++F NVK+W+ EI+ CE VN++L G
Sbjct: 64 WDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGN 123
Query: 153 RLGL-NQRSID 162
+ L N++ +D
Sbjct: 124 KTDLVNEKVVD 134
>sp|Q9ZRE2|RABD1_ARATH Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1
SV=1
Length = 205
Score = 139 bits (351), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 65/97 (67%), Positives = 81/97 (83%), Gaps = 3/97 (3%)
Query: 47 LQLVG---VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERF 103
L L+G VGKS LL+RF+D+ + SYI+TIGVDFKIRTI+ +G+ +KLQIWDTAGQERF
Sbjct: 11 LLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERF 70
Query: 104 RTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIE 140
RTITS+YYRG HG+I+VYD T E+F NVK+WL EI+
Sbjct: 71 RTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEID 107
>sp|P36861|YPTV2_VOLCA GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1
Length = 217
Score = 139 bits (351), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 66/110 (60%), Positives = 87/110 (79%), Gaps = 2/110 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+ F+ S+ITTIG+DFKI+ +DV+G+ VKLQIWDTAGQERFRTITS Y
Sbjct: 23 GVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAY 82
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGLNQ 158
YRG G+I+VYD+T +F NV+ W+ IE + + VN+IL G +L L +
Sbjct: 83 YRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVGNKLDLAE 132
>sp|O24466|RAE1A_ARATH Ras-related protein RABE1a OS=Arabidopsis thaliana GN=RABE1A PE=1
SV=1
Length = 216
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 62/101 (61%), Positives = 84/101 (83%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RFSD +F+ S+ITTIG+DFKIRTI+++G+++KLQIWDTAGQERFRTIT+ Y
Sbjct: 25 GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YRG G+++VYDVT +F N++ W+ IE + + VN+IL
Sbjct: 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDSVNKIL 125
>sp|Q39433|RB1BV_BETVU Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1
Length = 215
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 62/101 (61%), Positives = 84/101 (83%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RFSD +F+ S+ITTIG+DFKIRTI+++G+++KLQIWDTAGQERFRTIT+ Y
Sbjct: 25 GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YRG G+++VYDVT +F N++ W+ IE + + VN+IL
Sbjct: 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKIL 125
>sp|O42819|SEC4_CANGA Ras-related protein SEC4 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SEC4 PE=3
SV=1
Length = 215
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 84/111 (75%)
Query: 29 TGRGKNGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGE 88
+G NG ++ K + GVGKS LL+RF ++ F+ S+ITTIG+DFKI+T+D+NG+
Sbjct: 8 SGSSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGK 67
Query: 89 KVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
KVKLQ+WDTAGQERFRTIT+ YYRG G+I+VYDVT TFAN+K+W +
Sbjct: 68 KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQWFKTV 118
>sp|P28186|RAE1C_ARATH Ras-related protein RABE1c OS=Arabidopsis thaliana GN=RABE1C PE=1
SV=1
Length = 216
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 62/101 (61%), Positives = 84/101 (83%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RFSD +F+ S+ITTIG+DFKIRTI+++G+++KLQIWDTAGQERFRTIT+ Y
Sbjct: 25 GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YRG G+++VYDVT +F N++ W+ IE + + VN+IL
Sbjct: 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKIL 125
>sp|Q5R5H5|RAB18_PONAB Ras-related protein Rab-18 OS=Pongo abelii GN=RAB18 PE=2 SV=1
Length = 206
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/115 (55%), Positives = 84/115 (73%), Gaps = 3/115 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKSSLL+RF+D+TF TIGVDFK++TI V+G K KL IWDTAGQERFRT+T +Y
Sbjct: 18 GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC---EVVNRILGLRLGLNQRSID 162
YRG GVI+VYDVT +TF + WL+E+E C ++VN ++G ++ R +D
Sbjct: 78 YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVD 132
>sp|Q9NP72|RAB18_HUMAN Ras-related protein Rab-18 OS=Homo sapiens GN=RAB18 PE=1 SV=1
Length = 206
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/115 (55%), Positives = 84/115 (73%), Gaps = 3/115 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKSSLL+RF+D+TF TIGVDFK++TI V+G K KL IWDTAGQERFRT+T +Y
Sbjct: 18 GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC---EVVNRILGLRLGLNQRSID 162
YRG GVI+VYDVT +TF + WL+E+E C ++VN ++G ++ R +D
Sbjct: 78 YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVD 132
>sp|Q0IIG8|RAB18_BOVIN Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 PE=2 SV=1
Length = 206
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/115 (55%), Positives = 84/115 (73%), Gaps = 3/115 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKSSLL+RF+D+TF TIGVDFK++TI V+G K KL IWDTAGQERFRT+T +Y
Sbjct: 18 GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC---EVVNRILGLRLGLNQRSID 162
YRG GVI+VYDVT +TF + WL+E+E C ++VN ++G ++ R +D
Sbjct: 78 YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVD 132
>sp|P20790|RAB8A_DICDI Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A
PE=3 SV=1
Length = 208
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 85/101 (84%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RFS+++F+ S+ITTIG+DFKIRTI++ G+++KLQIWDTAGQERFRTIT+ Y
Sbjct: 25 GVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAY 84
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YRG G+++VYDVT ++F N++ W+ IE + + VN++L
Sbjct: 85 YRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKML 125
>sp|Q5EB77|RAB18_RAT Ras-related protein Rab-18 OS=Rattus norvegicus GN=Rab18 PE=2 SV=1
Length = 206
Score = 137 bits (345), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 64/115 (55%), Positives = 84/115 (73%), Gaps = 3/115 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKSSLL+RF+D+TF TIGVDFK++TI V+G K KL IWDTAGQERFRT+T +Y
Sbjct: 18 GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC---EVVNRILGLRLGLNQRSID 162
YRG GVI+VYDVT +TF + WL+E+E C ++VN ++G ++ R +D
Sbjct: 78 YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVD 132
>sp|P35293|RAB18_MOUSE Ras-related protein Rab-18 OS=Mus musculus GN=Rab18 PE=2 SV=2
Length = 206
Score = 137 bits (344), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 64/115 (55%), Positives = 84/115 (73%), Gaps = 3/115 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKSSLL+RF+D+TF TIGVDFK++TI V+G K KL IWDTAGQERFRT+T +Y
Sbjct: 18 GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC---EVVNRILGLRLGLNQRSID 162
YRG GVI+VYDVT +TF + WL+E+E C ++VN ++G ++ R +D
Sbjct: 78 YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVD 132
>sp|Q92930|RAB8B_HUMAN Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2
Length = 207
Score = 136 bits (342), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 60/111 (54%), Positives = 88/111 (79%), Gaps = 2/111 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGK+ LL RFS++ F+ ++I+TIG+DFKIRTI+++G+K+KLQIWDTAGQERFRTIT+ Y
Sbjct: 18 GVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC--EVVNRILGLRLGLNQR 159
YRG G+++VYD+T+ ++F N+K W+ IE + +V ILG + +N +
Sbjct: 78 YRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDK 128
>sp|Q2HJI8|RAB8B_BOVIN Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1
Length = 207
Score = 136 bits (342), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 60/111 (54%), Positives = 88/111 (79%), Gaps = 2/111 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGK+ LL RFS++ F+ ++I+TIG+DFKIRTI+++G+K+KLQIWDTAGQERFRTIT+ Y
Sbjct: 18 GVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC--EVVNRILGLRLGLNQR 159
YRG G+++VYD+T+ ++F N+K W+ IE + +V ILG + +N +
Sbjct: 78 YRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDK 128
>sp|P70550|RAB8B_RAT Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1
Length = 207
Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 60/111 (54%), Positives = 88/111 (79%), Gaps = 2/111 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGK+ LL RFS++ F+ ++I+TIG+DFKIRTI+++G+K+KLQIWDTAGQERFRTIT+ Y
Sbjct: 18 GVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC--EVVNRILGLRLGLNQR 159
YRG G+++VYD+T+ ++F N+K W+ IE + +V ILG + +N +
Sbjct: 78 YRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDK 128
>sp|Q5REC9|RAB8B_PONAB Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1
Length = 207
Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 60/111 (54%), Positives = 88/111 (79%), Gaps = 2/111 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGK+ LL RFS++ F+ ++I+TIG+DFKIRTI+++G+K+KLQIWDTAGQERFRTIT+ Y
Sbjct: 18 GVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC--EVVNRILGLRLGLNQR 159
YRG G+++VYD+T+ ++F N+K W+ IE + +V ILG + +N +
Sbjct: 78 YRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDK 128
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,095,616
Number of Sequences: 539616
Number of extensions: 2840451
Number of successful extensions: 8299
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 156
Number of HSP's that attempted gapping in prelim test: 7000
Number of HSP's gapped (non-prelim): 1182
length of query: 188
length of database: 191,569,459
effective HSP length: 111
effective length of query: 77
effective length of database: 131,672,083
effective search space: 10138750391
effective search space used: 10138750391
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)