Query psy1417
Match_columns 188
No_of_seqs 122 out of 1164
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 21:12:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 1.2E-36 2.6E-41 222.1 14.5 146 35-182 5-156 (205)
2 KOG0098|consensus 100.0 1.7E-32 3.7E-37 198.5 13.0 142 37-181 4-151 (216)
3 KOG0094|consensus 100.0 1.3E-31 2.7E-36 195.4 14.0 140 42-182 23-169 (221)
4 KOG0092|consensus 100.0 1.9E-31 4.1E-36 194.2 14.5 142 41-182 5-151 (200)
5 KOG0078|consensus 100.0 3.2E-31 6.8E-36 196.1 15.2 145 35-182 8-158 (207)
6 KOG0080|consensus 100.0 2.1E-31 4.6E-36 188.6 13.5 146 34-182 6-158 (209)
7 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.4E-30 3.1E-35 194.5 16.2 141 41-182 5-163 (182)
8 cd04131 Rnd Rnd subfamily. Th 100.0 1.9E-30 4.1E-35 193.2 16.6 141 41-182 1-159 (178)
9 KOG0394|consensus 100.0 3.8E-31 8.2E-36 191.2 12.2 143 38-182 8-162 (210)
10 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.4E-30 5.3E-35 199.5 17.4 145 37-182 9-171 (232)
11 cd04133 Rop_like Rop subfamily 100.0 2.5E-30 5.5E-35 192.1 16.8 140 42-182 2-157 (176)
12 cd04121 Rab40 Rab40 subfamily. 100.0 3.8E-30 8.2E-35 193.2 17.3 140 42-182 7-151 (189)
13 cd04120 Rab12 Rab12 subfamily. 100.0 4.5E-30 9.8E-35 194.6 17.0 140 43-182 2-147 (202)
14 KOG0079|consensus 100.0 1E-30 2.3E-35 182.8 10.3 143 37-182 6-153 (198)
15 KOG0087|consensus 100.0 4.4E-30 9.6E-35 189.5 13.5 146 33-180 8-158 (222)
16 cd01875 RhoG RhoG subfamily. 100.0 2.3E-29 5E-34 189.3 16.8 140 42-182 4-161 (191)
17 KOG0086|consensus 100.0 7E-30 1.5E-34 179.6 11.4 145 34-181 4-154 (214)
18 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 3.6E-29 7.8E-34 192.0 16.3 140 42-182 2-159 (222)
19 KOG0093|consensus 100.0 1.4E-29 3E-34 177.0 12.5 144 37-183 19-168 (193)
20 KOG0095|consensus 100.0 7.1E-30 1.5E-34 179.0 10.3 124 41-164 7-133 (213)
21 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.3E-28 2.7E-33 182.9 16.6 140 42-182 2-159 (175)
22 PF00071 Ras: Ras family; Int 100.0 1.1E-28 2.4E-33 180.1 15.8 139 43-182 1-145 (162)
23 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.9E-28 4.1E-33 183.0 16.6 140 42-182 1-150 (182)
24 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 2.4E-28 5.2E-33 185.1 17.3 141 42-182 1-152 (201)
25 cd04122 Rab14 Rab14 subfamily. 100.0 3.1E-28 6.8E-33 178.8 16.8 140 42-182 3-148 (166)
26 PLN03071 GTP-binding nuclear p 100.0 5.7E-28 1.2E-32 185.4 17.8 141 42-183 14-157 (219)
27 cd04117 Rab15 Rab15 subfamily. 100.0 8.2E-28 1.8E-32 176.0 17.2 140 42-182 1-146 (161)
28 cd00877 Ran Ran (Ras-related n 100.0 9.4E-28 2E-32 176.6 17.5 140 42-182 1-143 (166)
29 cd04102 RabL3 RabL3 (Rab-like3 100.0 9.5E-28 2.1E-32 181.7 16.2 135 42-176 1-169 (202)
30 cd01871 Rac1_like Rac1-like su 100.0 1.4E-27 3E-32 177.1 16.6 140 42-182 2-159 (174)
31 cd04116 Rab9 Rab9 subfamily. 100.0 2.4E-27 5.2E-32 174.5 17.1 141 42-182 6-155 (170)
32 cd01865 Rab3 Rab3 subfamily. 100.0 2.6E-27 5.6E-32 173.8 17.0 140 42-182 2-147 (165)
33 cd04124 RabL2 RabL2 subfamily. 100.0 2.4E-27 5.3E-32 173.4 16.6 140 42-182 1-142 (161)
34 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.8E-27 3.9E-32 176.2 15.9 139 42-182 3-148 (172)
35 smart00176 RAN Ran (Ras-relate 100.0 1.4E-27 3.1E-32 180.7 15.6 135 47-182 1-138 (200)
36 cd01867 Rab8_Rab10_Rab13_like 100.0 3.6E-27 7.8E-32 173.4 16.7 140 42-182 4-149 (167)
37 cd04127 Rab27A Rab27a subfamil 100.0 2.8E-27 6E-32 175.7 16.2 140 42-182 5-161 (180)
38 cd04110 Rab35 Rab35 subfamily. 100.0 4.2E-27 9.1E-32 178.1 17.1 139 43-182 8-151 (199)
39 cd04106 Rab23_lke Rab23-like s 100.0 3.8E-27 8.1E-32 171.9 16.3 140 42-182 1-147 (162)
40 cd04136 Rap_like Rap-like subf 100.0 3.6E-27 7.8E-32 172.1 16.0 139 42-182 2-147 (163)
41 cd04119 RJL RJL (RabJ-Like) su 100.0 4.5E-27 9.8E-32 171.9 16.5 140 42-182 1-151 (168)
42 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 4.7E-27 1E-31 173.6 16.5 139 43-182 2-149 (170)
43 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 5.9E-27 1.3E-31 171.8 16.7 140 42-182 3-148 (166)
44 cd01864 Rab19 Rab19 subfamily. 100.0 6E-27 1.3E-31 171.7 16.8 141 42-182 4-150 (165)
45 cd04134 Rho3 Rho3 subfamily. 100.0 4.7E-27 1E-31 176.4 16.2 139 43-182 2-158 (189)
46 cd04175 Rap1 Rap1 subgroup. T 100.0 6.6E-27 1.4E-31 171.2 15.8 140 41-182 1-147 (164)
47 cd04125 RabA_like RabA-like su 100.0 1.2E-26 2.6E-31 173.8 17.2 140 42-182 1-146 (188)
48 cd04115 Rab33B_Rab33A Rab33B/R 99.9 1.4E-26 3E-31 170.8 16.6 140 42-182 3-150 (170)
49 cd04132 Rho4_like Rho4-like su 99.9 8.7E-27 1.9E-31 174.2 15.7 140 42-182 1-151 (187)
50 cd04113 Rab4 Rab4 subfamily. 99.9 1.6E-26 3.5E-31 168.6 16.6 140 42-182 1-146 (161)
51 cd04176 Rap2 Rap2 subgroup. T 99.9 1.3E-26 2.8E-31 169.4 16.0 139 42-182 2-147 (163)
52 cd04109 Rab28 Rab28 subfamily. 99.9 1.8E-26 3.9E-31 176.6 16.8 140 42-182 1-150 (215)
53 cd01892 Miro2 Miro2 subfamily. 99.9 1.8E-26 3.8E-31 170.4 16.0 142 38-182 3-150 (169)
54 smart00174 RHO Rho (Ras homolo 99.9 1.9E-26 4.2E-31 170.2 16.1 138 44-182 1-156 (174)
55 PTZ00369 Ras-like protein; Pro 99.9 1.9E-26 4.1E-31 173.1 16.2 139 42-182 6-151 (189)
56 cd04111 Rab39 Rab39 subfamily. 99.9 2.6E-26 5.7E-31 175.3 16.8 140 42-182 3-150 (211)
57 cd01868 Rab11_like Rab11-like. 99.9 4E-26 8.7E-31 167.1 16.7 140 42-182 4-149 (165)
58 PLN00023 GTP-binding protein; 99.9 2.8E-26 6.2E-31 182.5 16.7 134 42-175 22-192 (334)
59 PLN03110 Rab GTPase; Provision 99.9 5.2E-26 1.1E-30 174.2 17.3 143 37-182 10-158 (216)
60 cd04130 Wrch_1 Wrch-1 subfamil 99.9 6.4E-26 1.4E-30 167.7 16.9 140 42-182 1-158 (173)
61 cd04138 H_N_K_Ras_like H-Ras/N 99.9 5.7E-26 1.2E-30 165.1 16.2 139 42-182 2-146 (162)
62 cd01873 RhoBTB RhoBTB subfamil 99.9 4.6E-26 9.9E-31 171.9 16.1 138 42-182 3-180 (195)
63 cd01866 Rab2 Rab2 subfamily. 99.9 8E-26 1.7E-30 166.4 16.8 140 42-182 5-150 (168)
64 cd04112 Rab26 Rab26 subfamily. 99.9 7.2E-26 1.6E-30 170.2 16.3 140 42-182 1-147 (191)
65 cd04144 Ras2 Ras2 subfamily. 99.9 4.3E-26 9.3E-31 171.3 14.9 138 43-182 1-147 (190)
66 smart00175 RAB Rab subfamily o 99.9 1.1E-25 2.4E-30 164.2 16.5 140 42-182 1-146 (164)
67 cd04140 ARHI_like ARHI subfami 99.9 9.6E-26 2.1E-30 165.5 16.2 139 42-182 2-149 (165)
68 cd04103 Centaurin_gamma Centau 99.9 9.1E-26 2E-30 164.9 15.8 134 42-182 1-143 (158)
69 cd04101 RabL4 RabL4 (Rab-like4 99.9 1.1E-25 2.4E-30 164.6 16.2 140 42-182 1-148 (164)
70 cd01860 Rab5_related Rab5-rela 99.9 1.5E-25 3.2E-30 163.6 16.9 141 41-182 1-147 (163)
71 cd04143 Rhes_like Rhes_like su 99.9 5E-26 1.1E-30 177.4 15.2 140 42-182 1-155 (247)
72 KOG0393|consensus 99.9 4.8E-27 1E-31 174.3 9.0 141 42-183 5-164 (198)
73 cd04142 RRP22 RRP22 subfamily. 99.9 1.1E-25 2.3E-30 170.3 16.3 141 42-182 1-158 (198)
74 KOG0088|consensus 99.9 2.1E-27 4.5E-32 168.1 5.9 144 39-182 11-159 (218)
75 cd04118 Rab24 Rab24 subfamily. 99.9 2.2E-25 4.8E-30 167.5 17.3 140 42-182 1-150 (193)
76 PLN03108 Rab family protein; P 99.9 2.5E-25 5.5E-30 169.7 17.3 140 42-182 7-152 (210)
77 KOG0091|consensus 99.9 7.9E-27 1.7E-31 165.8 8.3 140 42-182 9-157 (213)
78 cd01861 Rab6 Rab6 subfamily. 99.9 3.1E-25 6.7E-30 161.6 16.3 141 42-183 1-147 (161)
79 smart00173 RAS Ras subfamily o 99.9 2.3E-25 5E-30 162.8 15.7 139 42-182 1-146 (164)
80 cd01862 Rab7 Rab7 subfamily. 99.9 5.2E-25 1.1E-29 162.0 16.9 141 42-182 1-151 (172)
81 cd04126 Rab20 Rab20 subfamily. 99.9 3.1E-25 6.7E-30 170.1 16.2 111 42-157 1-113 (220)
82 cd04135 Tc10 TC10 subfamily. 99.9 5.4E-25 1.2E-29 162.5 16.9 140 42-182 1-158 (174)
83 cd04145 M_R_Ras_like M-Ras/R-R 99.9 5E-25 1.1E-29 160.8 16.4 139 42-182 3-148 (164)
84 cd01863 Rab18 Rab18 subfamily. 99.9 7.6E-25 1.7E-29 159.6 16.8 140 42-182 1-146 (161)
85 cd04146 RERG_RasL11_like RERG/ 99.9 3.7E-25 8.1E-30 162.2 14.5 138 43-182 1-147 (165)
86 cd01870 RhoA_like RhoA-like su 99.9 8.1E-25 1.8E-29 161.7 16.0 140 42-182 2-159 (175)
87 cd04177 RSR1 RSR1 subgroup. R 99.9 1.3E-24 2.7E-29 160.0 16.5 140 42-182 2-148 (168)
88 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 2.4E-25 5.2E-30 163.6 12.3 116 43-162 1-118 (164)
89 PTZ00132 GTP-binding nuclear p 99.9 4.6E-24 9.9E-29 163.2 17.8 140 42-182 10-152 (215)
90 KOG0081|consensus 99.9 9.8E-27 2.1E-31 164.7 2.7 142 37-181 7-164 (219)
91 cd04148 RGK RGK subfamily. Th 99.9 2.5E-24 5.3E-29 165.5 15.8 138 42-182 1-147 (221)
92 cd04123 Rab21 Rab21 subfamily. 99.9 5.2E-24 1.1E-28 154.8 16.7 140 42-182 1-146 (162)
93 KOG0395|consensus 99.9 1.2E-24 2.5E-29 163.9 13.0 139 42-182 4-149 (196)
94 cd04114 Rab30 Rab30 subfamily. 99.9 9.3E-24 2E-28 155.0 17.0 140 42-182 8-153 (169)
95 cd04149 Arf6 Arf6 subfamily. 99.9 2.5E-24 5.5E-29 158.7 13.7 111 43-158 11-124 (168)
96 PLN03118 Rab family protein; P 99.9 1.2E-23 2.5E-28 160.5 17.6 140 41-182 14-161 (211)
97 PLN00223 ADP-ribosylation fact 99.9 3.1E-24 6.8E-29 160.1 13.8 125 43-173 19-146 (181)
98 smart00177 ARF ARF-like small 99.9 4.9E-24 1.1E-28 158.2 14.5 111 43-158 15-128 (175)
99 cd04129 Rho2 Rho2 subfamily. 99.9 1.1E-23 2.3E-28 157.9 16.5 140 42-182 2-157 (187)
100 cd00154 Rab Rab family. Rab G 99.9 1.5E-23 3.3E-28 151.2 16.1 140 42-182 1-146 (159)
101 cd00157 Rho Rho (Ras homology) 99.9 1.8E-23 3.8E-28 153.6 16.4 140 42-182 1-157 (171)
102 cd04150 Arf1_5_like Arf1-Arf5- 99.9 8.6E-24 1.9E-28 154.5 14.5 112 43-159 2-116 (159)
103 KOG0097|consensus 99.9 2.6E-24 5.5E-29 150.0 10.3 143 37-182 9-157 (215)
104 PTZ00133 ADP-ribosylation fact 99.9 2.2E-23 4.8E-28 155.7 14.3 111 43-158 19-132 (182)
105 cd01893 Miro1 Miro1 subfamily. 99.9 4.8E-23 1E-27 151.3 15.3 138 43-182 2-148 (166)
106 cd04139 RalA_RalB RalA/RalB su 99.9 7.4E-23 1.6E-27 149.1 15.8 139 42-182 1-146 (164)
107 cd04158 ARD1 ARD1 subfamily. 99.9 3.3E-23 7.1E-28 152.7 13.4 111 43-158 1-114 (169)
108 cd04161 Arl2l1_Arl13_like Arl2 99.9 4.9E-23 1.1E-27 151.6 13.9 111 43-158 1-114 (167)
109 cd04147 Ras_dva Ras-dva subfam 99.9 9.7E-23 2.1E-27 154.0 15.0 113 43-156 1-116 (198)
110 cd00876 Ras Ras family. The R 99.9 1.1E-22 2.4E-27 147.5 14.7 138 43-182 1-145 (160)
111 PF08477 Miro: Miro-like prote 99.9 7.2E-23 1.5E-27 142.3 13.0 113 43-155 1-119 (119)
112 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 7.3E-23 1.6E-27 152.9 13.5 115 42-157 4-122 (183)
113 KOG0083|consensus 99.9 8.5E-25 1.8E-29 150.8 2.3 136 46-182 2-144 (192)
114 cd04157 Arl6 Arl6 subfamily. 99.9 1.6E-22 3.5E-27 147.3 13.8 112 43-158 1-118 (162)
115 cd04154 Arl2 Arl2 subfamily. 99.9 3.2E-22 6.9E-27 147.9 14.1 111 43-158 16-129 (173)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 3.3E-22 7.1E-27 148.1 13.9 111 43-158 17-130 (174)
117 cd04137 RheB Rheb (Ras Homolog 99.9 6.8E-22 1.5E-26 146.8 15.2 139 42-182 2-147 (180)
118 cd04156 ARLTS1 ARLTS1 subfamil 99.9 5.3E-22 1.2E-26 144.4 13.1 111 43-157 1-114 (160)
119 KOG4252|consensus 99.9 4.1E-24 8.8E-29 154.3 1.4 132 31-164 12-145 (246)
120 cd04151 Arl1 Arl1 subfamily. 99.9 1.5E-21 3.4E-26 142.0 14.0 110 43-157 1-113 (158)
121 KOG1673|consensus 99.9 5.7E-22 1.2E-26 140.0 10.0 149 34-182 13-171 (205)
122 cd00878 Arf_Arl Arf (ADP-ribos 99.9 3.2E-21 6.9E-26 140.2 14.2 111 43-158 1-114 (158)
123 cd04160 Arfrp1 Arfrp1 subfamil 99.9 2.4E-21 5.2E-26 141.9 13.2 112 43-158 1-121 (167)
124 smart00178 SAR Sar1p-like memb 99.9 4E-21 8.7E-26 143.6 14.1 121 43-169 19-142 (184)
125 COG1100 GTPase SAR1 and relate 99.9 3.4E-21 7.4E-26 147.3 13.8 116 42-157 6-124 (219)
126 cd00879 Sar1 Sar1 subfamily. 99.9 8.6E-21 1.9E-25 142.1 13.7 110 43-157 21-133 (190)
127 PF00025 Arf: ADP-ribosylation 99.9 1.2E-20 2.7E-25 140.0 14.0 112 42-158 15-129 (175)
128 cd04159 Arl10_like Arl10-like 99.9 1.5E-20 3.2E-25 135.6 14.1 111 43-157 1-114 (159)
129 KOG0070|consensus 99.9 2.6E-21 5.6E-26 140.7 9.2 111 42-157 18-131 (181)
130 TIGR00231 small_GTP small GTP- 99.8 1.1E-19 2.3E-24 130.5 15.2 141 42-182 2-148 (161)
131 KOG0073|consensus 99.8 6.2E-20 1.3E-24 130.7 13.2 111 42-157 17-130 (185)
132 KOG0071|consensus 99.8 4.3E-20 9.3E-25 128.4 11.2 119 41-164 17-139 (180)
133 PTZ00099 rab6; Provisional 99.8 2.2E-19 4.7E-24 133.4 14.0 118 64-182 3-126 (176)
134 cd01890 LepA LepA subfamily. 99.8 1.5E-19 3.2E-24 133.9 12.7 137 43-182 2-161 (179)
135 KOG0096|consensus 99.8 8.7E-20 1.9E-24 132.9 10.5 121 42-162 11-132 (216)
136 cd01897 NOG NOG1 is a nucleola 99.8 5.5E-19 1.2E-23 129.5 13.6 136 43-182 2-152 (168)
137 cd04155 Arl3 Arl3 subfamily. 99.8 1E-18 2.2E-23 128.8 14.5 110 43-157 16-128 (173)
138 cd04105 SR_beta Signal recogni 99.8 8.9E-19 1.9E-23 133.0 11.9 113 43-156 2-121 (203)
139 KOG0075|consensus 99.8 9.4E-20 2E-24 127.7 5.5 126 42-172 21-149 (186)
140 TIGR02528 EutP ethanolamine ut 99.8 3E-19 6.6E-24 127.6 7.8 119 43-182 2-129 (142)
141 cd01898 Obg Obg subfamily. Th 99.8 2.5E-18 5.5E-23 126.1 12.7 137 43-182 2-155 (170)
142 KOG4423|consensus 99.8 2.5E-21 5.4E-26 140.6 -4.3 145 36-182 22-178 (229)
143 cd00882 Ras_like_GTPase Ras-li 99.8 1.2E-17 2.5E-22 118.5 13.8 136 46-182 1-144 (157)
144 cd01891 TypA_BipA TypA (tyrosi 99.8 2.5E-18 5.5E-23 129.4 10.0 112 43-157 4-130 (194)
145 cd04171 SelB SelB subfamily. 99.8 1.2E-17 2.6E-22 121.5 11.2 109 43-157 2-117 (164)
146 KOG3883|consensus 99.8 2.1E-17 4.6E-22 116.7 11.8 130 43-172 11-150 (198)
147 cd01878 HflX HflX subfamily. 99.8 2.8E-17 6.1E-22 124.5 13.4 133 43-182 43-189 (204)
148 KOG0074|consensus 99.7 2E-17 4.4E-22 115.4 10.0 116 43-162 19-138 (185)
149 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 3.9E-17 8.4E-22 119.5 11.3 112 43-157 2-115 (168)
150 TIGR00450 mnmE_trmE_thdF tRNA 99.7 1.6E-16 3.5E-21 133.1 14.9 108 43-157 205-323 (442)
151 PRK03003 GTP-binding protein D 99.7 2.2E-16 4.8E-21 133.7 14.7 134 43-182 40-183 (472)
152 TIGR01393 lepA GTP-binding pro 99.7 1.9E-16 4.1E-21 137.0 13.5 137 43-182 5-164 (595)
153 cd01879 FeoB Ferrous iron tran 99.7 2E-16 4.3E-21 114.5 11.3 128 46-181 1-140 (158)
154 PRK15494 era GTPase Era; Provi 99.7 2.5E-16 5.4E-21 128.2 12.7 136 37-181 50-199 (339)
155 TIGR03598 GTPase_YsxC ribosome 99.7 3E-16 6.6E-21 116.6 11.3 108 43-156 20-141 (179)
156 TIGR03156 GTP_HflX GTP-binding 99.7 2.1E-16 4.5E-21 129.0 11.1 111 43-157 191-314 (351)
157 cd01881 Obg_like The Obg-like 99.7 4.1E-16 8.8E-21 114.8 11.5 134 46-182 1-161 (176)
158 PRK12299 obgE GTPase CgtA; Rev 99.7 6E-16 1.3E-20 125.4 13.1 136 43-182 160-312 (335)
159 cd04164 trmE TrmE (MnmE, ThdF, 99.7 1.4E-15 3.1E-20 109.5 13.7 130 42-182 2-141 (157)
160 PRK04213 GTP-binding protein; 99.7 1.2E-16 2.6E-21 120.7 8.4 107 43-157 11-143 (201)
161 PRK05291 trmE tRNA modificatio 99.7 8.8E-16 1.9E-20 129.2 12.9 108 43-157 217-334 (449)
162 PRK00093 GTP-binding protein D 99.7 1.7E-15 3.8E-20 127.1 13.7 132 43-182 3-146 (435)
163 cd01894 EngA1 EngA1 subfamily. 99.7 1.6E-15 3.4E-20 109.4 11.5 131 45-182 1-142 (157)
164 TIGR02729 Obg_CgtA Obg family 99.6 2.8E-15 6.1E-20 121.4 13.0 137 42-182 158-313 (329)
165 TIGR00487 IF-2 translation ini 99.6 4.6E-15 9.9E-20 128.0 15.0 117 36-158 84-201 (587)
166 COG2229 Predicted GTPase [Gene 99.6 3.8E-15 8.3E-20 108.5 12.0 120 40-164 9-142 (187)
167 PRK03003 GTP-binding protein D 99.6 3.4E-15 7.3E-20 126.6 13.6 113 38-157 210-335 (472)
168 KOG0076|consensus 99.6 2.4E-16 5.1E-21 113.6 5.6 112 43-158 19-140 (197)
169 TIGR00436 era GTP-binding prot 99.6 3.6E-15 7.8E-20 117.9 12.4 132 43-181 2-147 (270)
170 PRK12297 obgE GTPase CgtA; Rev 99.6 1.7E-14 3.6E-19 120.0 16.8 136 43-182 160-311 (424)
171 KOG1707|consensus 99.6 6.1E-16 1.3E-20 129.4 8.0 113 42-156 10-127 (625)
172 PRK11058 GTPase HflX; Provisio 99.6 6.6E-15 1.4E-19 122.9 14.0 114 43-157 199-322 (426)
173 cd04167 Snu114p Snu114p subfam 99.6 3.2E-15 6.9E-20 114.2 10.7 111 43-156 2-135 (213)
174 cd00881 GTP_translation_factor 99.6 4.1E-15 9E-20 110.5 10.9 110 43-157 1-127 (189)
175 cd01889 SelB_euk SelB subfamil 99.6 2.7E-15 5.8E-20 112.7 9.5 113 42-157 1-133 (192)
176 PRK15467 ethanolamine utilizat 99.6 2E-15 4.3E-20 110.2 8.3 122 43-182 3-131 (158)
177 PRK00454 engB GTP-binding prot 99.6 9.1E-15 2E-19 109.8 11.3 106 43-156 26-147 (196)
178 TIGR00475 selB selenocysteine- 99.6 1E-14 2.3E-19 126.1 12.5 106 43-156 2-115 (581)
179 TIGR03594 GTPase_EngA ribosome 99.6 2.2E-14 4.7E-19 120.3 13.7 131 43-181 1-143 (429)
180 PRK05433 GTP-binding protein L 99.6 1.8E-14 3.9E-19 124.9 13.1 137 43-182 9-168 (600)
181 cd01895 EngA2 EngA2 subfamily. 99.6 3.7E-14 7.9E-19 103.6 12.8 110 43-157 4-126 (174)
182 cd04168 TetM_like Tet(M)-like 99.6 9.6E-15 2.1E-19 113.3 10.1 113 43-158 1-130 (237)
183 cd04163 Era Era subfamily. Er 99.6 3.2E-14 6.8E-19 103.1 12.2 135 42-181 4-152 (168)
184 PF04670 Gtr1_RagA: Gtr1/RagA 99.6 2.9E-15 6.3E-20 115.3 6.7 111 43-156 1-123 (232)
185 PRK05306 infB translation init 99.6 3E-14 6.6E-19 126.0 13.2 116 36-158 287-403 (787)
186 PRK09518 bifunctional cytidyla 99.6 8E-14 1.7E-18 123.4 15.9 133 43-182 277-420 (712)
187 cd04169 RF3 RF3 subfamily. Pe 99.6 2.6E-14 5.7E-19 112.7 11.5 113 43-158 4-137 (267)
188 CHL00189 infB translation init 99.6 2E-14 4.3E-19 126.2 11.6 119 36-159 241-362 (742)
189 TIGR03594 GTPase_EngA ribosome 99.6 8.4E-14 1.8E-18 116.7 14.0 110 43-157 174-296 (429)
190 PF02421 FeoB_N: Ferrous iron 99.6 3.4E-14 7.3E-19 103.0 10.0 125 42-173 1-137 (156)
191 cd01885 EF2 EF2 (for archaea a 99.6 2.3E-14 4.9E-19 110.1 9.6 111 43-156 2-137 (222)
192 cd01850 CDC_Septin CDC/Septin. 99.6 4.4E-14 9.6E-19 111.9 11.6 112 41-156 4-155 (276)
193 KOG0072|consensus 99.5 7.6E-15 1.6E-19 102.8 5.5 115 43-162 20-137 (182)
194 PRK10218 GTP-binding protein; 99.5 8.2E-14 1.8E-18 120.6 13.2 113 43-158 7-134 (607)
195 cd00880 Era_like Era (E. coli 99.5 1.5E-13 3.3E-18 98.3 12.0 107 46-156 1-116 (163)
196 PRK00089 era GTPase Era; Revie 99.5 9.5E-14 2.1E-18 110.9 11.6 134 43-181 7-154 (292)
197 TIGR00491 aIF-2 translation in 99.5 7.1E-14 1.5E-18 120.6 11.1 109 43-157 6-134 (590)
198 PF09439 SRPRB: Signal recogni 99.5 1.5E-14 3.2E-19 107.1 5.9 110 43-156 5-124 (181)
199 PRK12296 obgE GTPase CgtA; Rev 99.5 1.3E-13 2.7E-18 116.4 12.2 112 42-157 160-297 (500)
200 KOG0077|consensus 99.5 2E-14 4.2E-19 103.0 6.0 110 43-157 22-134 (193)
201 cd01876 YihA_EngB The YihA (En 99.5 1.7E-13 3.7E-18 99.5 10.9 106 43-156 1-122 (170)
202 TIGR01394 TypA_BipA GTP-bindin 99.5 1.1E-13 2.4E-18 119.8 10.7 113 43-158 3-130 (594)
203 PF10662 PduV-EutP: Ethanolami 99.5 8.3E-14 1.8E-18 99.0 8.2 120 43-182 3-130 (143)
204 TIGR00437 feoB ferrous iron tr 99.5 3E-13 6.4E-18 117.3 13.3 127 48-182 1-139 (591)
205 PRK12298 obgE GTPase CgtA; Rev 99.5 2.9E-13 6.3E-18 111.9 12.6 112 43-157 161-288 (390)
206 PRK09518 bifunctional cytidyla 99.5 1.9E-13 4.2E-18 121.0 11.7 109 43-157 452-574 (712)
207 TIGR00483 EF-1_alpha translati 99.5 1.8E-13 3.9E-18 114.7 10.2 114 42-157 8-154 (426)
208 PRK09554 feoB ferrous iron tra 99.5 4.6E-13 1E-17 118.8 13.3 124 42-172 4-143 (772)
209 PRK04004 translation initiatio 99.5 3.6E-13 7.7E-18 116.5 12.1 108 43-156 8-135 (586)
210 PRK12317 elongation factor 1-a 99.5 1.9E-13 4.2E-18 114.5 10.0 115 41-157 6-152 (425)
211 cd04166 CysN_ATPS CysN_ATPS su 99.5 3.5E-13 7.7E-18 102.6 10.4 111 43-157 1-143 (208)
212 cd04170 EF-G_bact Elongation f 99.5 2.7E-13 6E-18 107.0 10.0 112 43-159 1-131 (268)
213 PRK00093 GTP-binding protein D 99.5 1.6E-12 3.5E-17 109.2 14.9 111 42-157 174-297 (435)
214 cd01888 eIF2_gamma eIF2-gamma 99.5 4.2E-13 9.2E-18 101.8 9.8 110 43-157 2-150 (203)
215 cd01896 DRG The developmentall 99.5 2.4E-12 5.2E-17 99.7 13.9 89 43-135 2-100 (233)
216 cd04104 p47_IIGP_like p47 (47- 99.5 7.5E-13 1.6E-17 100.0 10.4 109 42-156 2-119 (197)
217 PF00009 GTP_EFTU: Elongation 99.4 3.8E-13 8.1E-18 100.8 8.3 113 42-157 4-135 (188)
218 cd01886 EF-G Elongation factor 99.4 1.4E-12 3.1E-17 103.0 11.5 111 43-158 1-130 (270)
219 TIGR00503 prfC peptide chain r 99.4 1.2E-12 2.7E-17 111.9 11.8 113 43-158 13-146 (527)
220 KOG1707|consensus 99.4 2.2E-12 4.8E-17 108.4 12.7 162 15-181 401-567 (625)
221 PRK13351 elongation factor G; 99.4 7.9E-13 1.7E-17 116.9 10.4 109 43-158 10-139 (687)
222 PRK00741 prfC peptide chain re 99.4 7.3E-13 1.6E-17 113.3 9.6 113 43-158 12-145 (526)
223 PF01926 MMR_HSR1: 50S ribosom 99.4 5.5E-12 1.2E-16 87.1 12.3 102 43-153 1-116 (116)
224 cd01883 EF1_alpha Eukaryotic e 99.4 1.6E-12 3.4E-17 99.8 9.9 111 43-157 1-150 (219)
225 TIGR00490 aEF-2 translation el 99.4 2.1E-12 4.6E-17 114.5 10.2 111 43-156 21-150 (720)
226 COG1159 Era GTPase [General fu 99.4 1.6E-12 3.5E-17 101.7 8.3 107 43-156 8-126 (298)
227 cd01884 EF_Tu EF-Tu subfamily. 99.4 5.4E-12 1.2E-16 95.2 10.9 112 42-156 3-130 (195)
228 COG0218 Predicted GTPase [Gene 99.4 4E-12 8.6E-17 94.6 9.6 106 43-156 26-147 (200)
229 PRK10512 selenocysteinyl-tRNA- 99.4 1.2E-11 2.7E-16 107.6 13.4 105 43-156 2-116 (614)
230 TIGR00484 EF-G translation elo 99.4 6.7E-12 1.5E-16 110.9 11.5 115 37-158 8-141 (689)
231 smart00010 small_GTPase Small 99.3 9.1E-12 2E-16 86.4 8.6 86 42-156 1-89 (124)
232 PRK12735 elongation factor Tu; 99.3 2.3E-11 5E-16 101.1 11.5 111 41-156 12-140 (396)
233 COG0486 ThdF Predicted GTPase 99.3 4.1E-11 8.9E-16 99.0 12.8 108 43-157 219-337 (454)
234 COG1160 Predicted GTPases [Gen 99.3 1.9E-11 4.2E-16 100.6 9.9 108 43-157 5-125 (444)
235 PRK04000 translation initiatio 99.3 1.2E-11 2.6E-16 103.2 8.9 112 41-157 9-152 (411)
236 TIGR00485 EF-Tu translation el 99.3 2.7E-11 5.9E-16 100.7 10.7 111 41-156 12-140 (394)
237 TIGR03680 eif2g_arch translati 99.3 1.3E-11 2.9E-16 102.8 8.5 116 41-157 4-147 (406)
238 PLN03126 Elongation factor Tu; 99.3 3.4E-11 7.5E-16 101.9 10.9 113 41-156 81-209 (478)
239 cd04165 GTPBP1_like GTPBP1-lik 99.3 4.8E-11 1E-15 91.9 10.8 111 43-156 1-150 (224)
240 PRK12736 elongation factor Tu; 99.3 3.8E-11 8.3E-16 99.7 10.8 113 41-156 12-140 (394)
241 COG1084 Predicted GTPase [Gene 99.3 9.3E-11 2E-15 92.9 11.8 110 43-157 170-293 (346)
242 KOG0090|consensus 99.3 1.6E-11 3.6E-16 91.6 7.0 109 43-156 40-157 (238)
243 PRK12739 elongation factor G; 99.2 5.8E-11 1.3E-15 105.1 11.2 114 38-158 7-139 (691)
244 CHL00071 tufA elongation facto 99.2 1.1E-10 2.5E-15 97.4 11.5 110 42-156 13-140 (409)
245 KOG1423|consensus 99.2 5.4E-11 1.2E-15 93.4 8.7 121 31-156 64-197 (379)
246 KOG0462|consensus 99.2 3.2E-10 6.9E-15 95.0 13.1 124 37-164 58-197 (650)
247 PRK00049 elongation factor Tu; 99.2 2E-10 4.4E-15 95.5 12.0 112 41-157 12-141 (396)
248 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 9E-11 2E-15 88.5 9.0 108 43-156 2-128 (196)
249 PLN00043 elongation factor 1-a 99.2 1.6E-10 3.4E-15 97.4 10.8 112 41-157 7-158 (447)
250 TIGR00991 3a0901s02IAP34 GTP-b 99.2 3.7E-10 8.1E-15 90.0 12.1 110 43-156 40-165 (313)
251 PLN03127 Elongation factor Tu; 99.2 2.4E-10 5.2E-15 96.2 11.6 111 41-156 61-189 (447)
252 TIGR02034 CysN sulfate adenyly 99.2 1.1E-10 2.3E-15 97.4 8.7 111 43-157 2-146 (406)
253 COG3596 Predicted GTPase [Gene 99.2 2.4E-11 5.2E-16 94.2 4.0 111 43-156 41-160 (296)
254 PRK05124 cysN sulfate adenylyl 99.2 1.8E-10 4E-15 97.7 9.7 111 43-157 29-173 (474)
255 PRK00007 elongation factor G; 99.2 2.1E-10 4.7E-15 101.5 10.1 115 37-158 8-141 (693)
256 COG1160 Predicted GTPases [Gen 99.2 1.9E-10 4E-15 94.9 9.0 112 38-156 177-301 (444)
257 COG0370 FeoB Fe2+ transport sy 99.2 3.6E-10 7.9E-15 97.1 11.1 126 43-175 5-142 (653)
258 PLN00116 translation elongatio 99.1 1.9E-10 4.1E-15 103.7 9.6 117 36-157 16-163 (843)
259 cd00066 G-alpha G protein alph 99.1 5.5E-10 1.2E-14 90.3 11.4 73 89-161 160-245 (317)
260 KOG3886|consensus 99.1 4.1E-11 8.9E-16 90.6 4.4 111 43-156 6-128 (295)
261 KOG3905|consensus 99.1 7.1E-10 1.5E-14 87.9 11.2 116 13-140 33-155 (473)
262 PTZ00141 elongation factor 1- 99.1 5.2E-10 1.1E-14 94.3 11.1 112 41-156 7-157 (446)
263 KOG1489|consensus 99.1 8.3E-10 1.8E-14 87.2 11.1 136 43-181 198-350 (366)
264 PRK05506 bifunctional sulfate 99.1 3.3E-10 7.1E-15 99.4 9.1 110 43-156 26-169 (632)
265 PTZ00416 elongation factor 2; 99.1 4.1E-10 8.9E-15 101.4 9.8 112 43-157 21-157 (836)
266 PRK12740 elongation factor G; 99.1 4.2E-10 9.2E-15 99.4 9.3 107 47-158 1-126 (668)
267 cd01853 Toc34_like Toc34-like 99.1 1.5E-09 3.2E-14 84.8 10.9 110 42-156 32-161 (249)
268 COG0481 LepA Membrane GTPase L 99.1 2.2E-09 4.8E-14 88.9 11.2 138 43-182 11-170 (603)
269 COG2262 HflX GTPases [General 99.1 9.8E-10 2.1E-14 89.5 9.0 116 37-156 190-316 (411)
270 PRK07560 elongation factor EF- 99.0 7.2E-10 1.6E-14 98.7 8.2 111 43-156 22-151 (731)
271 COG4917 EutP Ethanolamine util 99.0 3.3E-10 7.1E-15 77.9 4.3 123 43-183 3-131 (148)
272 KOG1145|consensus 99.0 1.3E-08 2.8E-13 85.6 12.1 116 36-164 150-273 (683)
273 PF04548 AIG1: AIG1 family; I 98.9 3.9E-09 8.5E-14 80.6 8.1 111 42-156 1-128 (212)
274 COG1217 TypA Predicted membran 98.9 8.1E-09 1.8E-13 85.4 9.6 116 43-160 7-136 (603)
275 cd01882 BMS1 Bms1. Bms1 is an 98.9 1.3E-08 2.8E-13 78.5 10.0 103 43-156 41-145 (225)
276 cd01899 Ygr210 Ygr210 subfamil 98.9 1.1E-08 2.4E-13 82.6 9.8 81 44-124 1-110 (318)
277 PF05783 DLIC: Dynein light in 98.9 1.6E-08 3.4E-13 85.4 10.2 95 43-140 27-128 (472)
278 COG0532 InfB Translation initi 98.9 3E-08 6.5E-13 83.3 11.7 114 43-162 7-125 (509)
279 KOG1191|consensus 98.9 7.1E-09 1.5E-13 86.1 7.7 112 43-156 270-401 (531)
280 COG0536 Obg Predicted GTPase [ 98.8 3.2E-08 7E-13 79.1 10.1 109 45-156 163-287 (369)
281 COG0480 FusA Translation elong 98.8 2.5E-08 5.5E-13 87.6 10.0 116 36-156 7-140 (697)
282 PRK09602 translation-associate 98.8 3.9E-08 8.4E-13 81.7 10.6 83 42-124 2-113 (396)
283 PF00350 Dynamin_N: Dynamin fa 98.8 7.9E-08 1.7E-12 70.3 10.7 63 91-154 102-168 (168)
284 COG5256 TEF1 Translation elong 98.8 4.2E-08 9.1E-13 80.2 9.4 116 40-156 6-157 (428)
285 KOG0468|consensus 98.8 3.7E-08 7.9E-13 84.6 9.2 116 36-156 125-261 (971)
286 PF00735 Septin: Septin; Inte 98.8 1.2E-07 2.7E-12 75.3 11.1 112 41-156 4-154 (281)
287 TIGR00993 3a0901s04IAP86 chlor 98.8 1.4E-07 3.1E-12 81.7 12.1 113 40-156 117-248 (763)
288 COG1163 DRG Predicted GTPase [ 98.7 1.1E-07 2.3E-12 75.7 9.9 93 43-138 65-166 (365)
289 PTZ00327 eukaryotic translatio 98.7 4.6E-08 9.9E-13 82.6 8.4 117 39-157 32-184 (460)
290 KOG3887|consensus 98.7 2.4E-08 5.2E-13 76.4 5.6 111 43-156 29-147 (347)
291 PRK14845 translation initiatio 98.7 8.3E-08 1.8E-12 87.6 9.2 59 92-156 528-590 (1049)
292 COG4108 PrfC Peptide chain rel 98.7 2E-07 4.4E-12 76.7 10.4 126 43-173 14-164 (528)
293 PF05049 IIGP: Interferon-indu 98.7 2.5E-08 5.3E-13 81.7 4.4 108 42-156 36-153 (376)
294 smart00275 G_alpha G protein a 98.7 2.2E-07 4.8E-12 75.9 10.0 83 71-157 169-264 (342)
295 KOG1490|consensus 98.6 4.2E-08 9.1E-13 81.8 4.8 137 11-156 142-293 (620)
296 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 9.8E-08 2.1E-12 68.2 6.0 54 43-100 85-138 (141)
297 KOG0082|consensus 98.6 7.9E-07 1.7E-11 72.1 11.0 70 90-159 195-277 (354)
298 PTZ00258 GTP-binding protein; 98.6 7E-07 1.5E-11 73.8 10.5 80 43-124 23-126 (390)
299 smart00053 DYNc Dynamin, GTPas 98.5 1.3E-06 2.8E-11 67.9 10.3 66 90-157 125-205 (240)
300 cd01900 YchF YchF subfamily. 98.5 2.4E-07 5.2E-12 73.3 6.0 79 44-124 1-103 (274)
301 PRK13768 GTPase; Provisional 98.5 2.1E-07 4.5E-12 73.0 5.3 66 91-156 98-174 (253)
302 PRK09601 GTP-binding protein Y 98.5 8.5E-07 1.8E-11 72.6 8.7 81 42-124 3-107 (364)
303 TIGR00157 ribosome small subun 98.5 7.3E-07 1.6E-11 69.6 7.6 79 101-182 24-107 (245)
304 cd01859 MJ1464 MJ1464. This f 98.5 6.1E-07 1.3E-11 65.0 6.7 53 43-99 103-155 (156)
305 cd01856 YlqF YlqF. Proteins o 98.4 6.5E-07 1.4E-11 66.0 6.3 54 43-100 117-170 (171)
306 cd01858 NGP_1 NGP-1. Autoanti 98.4 1.1E-06 2.3E-11 63.9 7.0 53 43-99 104-156 (157)
307 COG5019 CDC3 Septin family pro 98.4 4.2E-06 9.1E-11 67.7 10.8 60 40-99 22-91 (373)
308 KOG1547|consensus 98.4 2.5E-06 5.4E-11 65.5 8.7 61 39-99 44-113 (336)
309 PRK09866 hypothetical protein; 98.4 5.5E-06 1.2E-10 71.9 11.5 67 90-157 230-302 (741)
310 PF03029 ATP_bind_1: Conserved 98.4 1.8E-07 4E-12 72.6 2.2 67 91-157 92-169 (238)
311 cd04178 Nucleostemin_like Nucl 98.3 1.4E-06 3.1E-11 64.4 6.4 53 43-99 119-171 (172)
312 KOG4273|consensus 98.3 1.5E-06 3.2E-11 67.1 6.6 111 43-156 6-121 (418)
313 KOG2655|consensus 98.3 9E-06 1.9E-10 66.2 10.9 60 40-99 20-88 (366)
314 KOG0705|consensus 98.3 9.2E-07 2E-11 74.7 5.0 134 40-180 29-171 (749)
315 cd01855 YqeH YqeH. YqeH is an 98.3 1.6E-06 3.6E-11 64.9 5.9 54 43-99 129-189 (190)
316 TIGR02836 spore_IV_A stage IV 98.3 1.3E-05 2.9E-10 66.4 10.8 112 43-156 19-192 (492)
317 TIGR00101 ureG urease accessor 98.3 2.3E-05 5.1E-10 59.3 11.4 84 90-182 92-180 (199)
318 KOG0467|consensus 98.2 6.2E-06 1.3E-10 72.1 8.3 113 36-156 6-136 (887)
319 TIGR03596 GTPase_YlqF ribosome 98.2 4.2E-06 9.1E-11 66.5 6.9 54 43-100 120-173 (276)
320 PRK09563 rbgA GTPase YlqF; Rev 98.2 6E-06 1.3E-10 66.0 7.5 55 43-101 123-177 (287)
321 KOG0458|consensus 98.2 2.7E-05 5.9E-10 66.3 11.6 113 41-156 177-327 (603)
322 KOG0461|consensus 98.2 1.1E-05 2.5E-10 64.9 8.9 114 41-156 7-134 (522)
323 COG2895 CysN GTPases - Sulfate 98.2 1.6E-05 3.5E-10 64.2 9.5 110 43-156 8-151 (431)
324 KOG1532|consensus 98.1 5.3E-06 1.1E-10 64.9 5.7 21 43-63 21-41 (366)
325 KOG1954|consensus 98.1 1.4E-05 3.1E-10 64.9 8.2 111 43-156 60-223 (532)
326 COG1161 Predicted GTPases [Gen 98.1 6.7E-06 1.5E-10 66.7 6.2 54 43-100 134-187 (322)
327 cd01851 GBP Guanylate-binding 98.0 3.2E-05 7E-10 59.6 8.4 84 43-127 9-105 (224)
328 PF03193 DUF258: Protein of un 98.0 7.3E-06 1.6E-10 59.7 4.4 22 43-64 37-58 (161)
329 KOG0464|consensus 98.0 4.8E-06 1E-10 68.5 3.7 111 43-156 39-166 (753)
330 KOG0410|consensus 98.0 1.6E-05 3.4E-10 63.6 6.3 116 43-162 180-312 (410)
331 KOG1144|consensus 98.0 2E-05 4.4E-10 68.9 7.1 108 43-156 477-604 (1064)
332 cd01849 YlqF_related_GTPase Yl 98.0 2.5E-05 5.5E-10 56.5 6.5 52 43-99 102-154 (155)
333 COG0050 TufB GTPases - transla 97.9 4.5E-05 9.7E-10 60.3 7.6 113 36-156 7-140 (394)
334 PRK09435 membrane ATPase/prote 97.9 5.9E-05 1.3E-09 61.3 8.5 60 89-157 148-207 (332)
335 KOG1486|consensus 97.9 0.00013 2.9E-09 56.6 9.8 94 43-139 64-166 (364)
336 cd03112 CobW_like The function 97.9 6.4E-05 1.4E-09 54.7 7.5 21 44-64 3-23 (158)
337 PRK12288 GTPase RsgA; Reviewed 97.9 3.4E-05 7.4E-10 63.2 6.3 23 43-65 207-229 (347)
338 COG5192 BMS1 GTP-binding prote 97.9 7.3E-05 1.6E-09 63.9 8.3 113 32-157 62-176 (1077)
339 PRK13796 GTPase YqeH; Provisio 97.9 2.9E-05 6.2E-10 64.1 5.5 55 43-100 162-220 (365)
340 TIGR03597 GTPase_YqeH ribosome 97.8 4.1E-05 9E-10 63.1 6.4 56 43-101 156-215 (360)
341 TIGR00157 ribosome small subun 97.8 3.6E-05 7.8E-10 60.1 5.6 22 43-64 122-143 (245)
342 PRK12289 GTPase RsgA; Reviewed 97.8 3.9E-05 8.4E-10 62.9 5.8 22 43-64 174-195 (352)
343 KOG2486|consensus 97.7 6.1E-05 1.3E-09 59.1 5.2 106 43-156 138-260 (320)
344 COG1162 Predicted GTPases [Gen 97.7 6.4E-05 1.4E-09 59.8 5.3 59 43-104 166-230 (301)
345 TIGR00092 GTP-binding protein 97.7 0.00014 3E-09 59.9 7.4 81 42-124 3-108 (368)
346 KOG3859|consensus 97.7 3.1E-05 6.8E-10 60.8 2.8 72 28-99 29-104 (406)
347 COG5257 GCD11 Translation init 97.6 6.7E-05 1.5E-09 60.0 4.4 116 41-156 10-152 (415)
348 KOG0448|consensus 97.6 0.00097 2.1E-08 58.2 10.9 66 91-159 207-276 (749)
349 TIGR03348 VI_IcmF type VI secr 97.6 0.00042 9.2E-09 65.2 9.4 108 44-156 114-255 (1169)
350 cd03115 SRP The signal recogni 97.6 0.00074 1.6E-08 49.6 9.0 67 89-159 82-154 (173)
351 PRK00098 GTPase RsgA; Reviewed 97.6 0.00018 4E-09 57.7 6.1 23 43-65 166-188 (298)
352 KOG1491|consensus 97.6 0.00057 1.2E-08 55.2 8.6 85 40-124 19-125 (391)
353 cd01854 YjeQ_engC YjeQ/EngC. 97.6 0.0002 4.4E-09 57.2 6.2 23 43-65 163-185 (287)
354 TIGR00750 lao LAO/AO transport 97.5 0.00053 1.2E-08 55.1 8.4 21 43-63 36-56 (300)
355 TIGR01425 SRP54_euk signal rec 97.5 0.00058 1.3E-08 57.3 8.7 67 89-159 182-254 (429)
356 TIGR00064 ftsY signal recognit 97.5 0.0011 2.5E-08 52.5 9.4 88 88-180 153-253 (272)
357 COG0012 Predicted GTPase, prob 97.5 0.00064 1.4E-08 55.6 8.0 83 42-124 3-108 (372)
358 KOG1143|consensus 97.5 0.00023 5E-09 58.2 5.2 123 31-158 157-317 (591)
359 PF00503 G-alpha: G-protein al 97.5 0.0007 1.5E-08 56.4 8.3 67 90-156 236-315 (389)
360 PRK10416 signal recognition pa 97.5 0.001 2.2E-08 54.0 9.0 21 43-63 116-136 (318)
361 KOG0469|consensus 97.5 0.00052 1.1E-08 58.1 7.4 120 43-164 21-172 (842)
362 COG1618 Predicted nucleotide k 97.5 0.0017 3.6E-08 47.2 9.0 54 42-98 6-59 (179)
363 PRK14722 flhF flagellar biosyn 97.4 0.0019 4.1E-08 53.4 9.9 21 43-63 139-159 (374)
364 COG1419 FlhF Flagellar GTP-bin 97.4 0.00088 1.9E-08 55.4 7.8 108 43-156 205-350 (407)
365 PRK11889 flhF flagellar biosyn 97.4 0.0019 4.2E-08 53.7 9.6 134 43-180 243-413 (436)
366 PF06858 NOG1: Nucleolar GTP-b 97.4 0.00094 2E-08 39.9 5.7 42 114-155 14-58 (58)
367 PF03266 NTPase_1: NTPase; In 97.3 0.00035 7.6E-09 51.4 4.7 52 43-97 1-52 (168)
368 cd01854 YjeQ_engC YjeQ/EngC. 97.3 0.00053 1.1E-08 54.8 6.0 49 107-157 72-122 (287)
369 PF13207 AAA_17: AAA domain; P 97.3 0.00024 5.2E-09 48.9 3.4 22 43-64 1-22 (121)
370 KOG0460|consensus 97.3 0.00075 1.6E-08 54.6 6.3 121 32-156 45-182 (449)
371 PRK08118 topology modulation p 97.3 0.00025 5.4E-09 52.1 3.2 22 43-64 3-24 (167)
372 cd00009 AAA The AAA+ (ATPases 97.3 0.0018 4E-08 45.0 7.6 23 43-65 21-43 (151)
373 KOG1424|consensus 97.2 0.00042 9E-09 58.6 4.4 55 42-100 315-369 (562)
374 PRK14721 flhF flagellar biosyn 97.2 0.0014 3.1E-08 54.9 7.3 21 43-63 193-213 (420)
375 PRK12727 flagellar biosynthesi 97.2 0.005 1.1E-07 53.1 10.5 21 43-63 352-372 (559)
376 PRK07261 topology modulation p 97.2 0.00036 7.9E-09 51.5 3.2 22 43-64 2-23 (171)
377 KOG0465|consensus 97.2 0.00079 1.7E-08 58.0 5.6 111 43-156 41-168 (721)
378 PF13671 AAA_33: AAA domain; P 97.1 0.00041 8.9E-09 49.1 3.2 20 44-63 2-21 (143)
379 COG0563 Adk Adenylate kinase a 97.1 0.00039 8.5E-09 51.7 3.2 22 43-64 2-23 (178)
380 PRK14974 cell division protein 97.1 0.0027 5.8E-08 51.9 8.2 87 90-180 223-315 (336)
381 cd01855 YqeH YqeH. YqeH is an 97.1 0.00075 1.6E-08 50.4 4.5 50 103-157 24-74 (190)
382 cd01857 HSR1_MMR1 HSR1/MMR1. 97.1 0.00085 1.8E-08 47.7 4.5 45 109-156 7-54 (141)
383 KOG0447|consensus 97.1 0.0032 6.9E-08 54.0 8.5 66 91-157 413-492 (980)
384 TIGR03597 GTPase_YqeH ribosome 97.1 0.00072 1.6E-08 55.8 4.6 78 100-182 50-137 (360)
385 cd02038 FleN-like FleN is a me 97.1 0.0024 5.2E-08 45.4 6.5 105 45-156 4-109 (139)
386 PRK05703 flhF flagellar biosyn 97.1 0.0062 1.4E-07 51.4 9.9 88 89-180 299-393 (424)
387 PRK12724 flagellar biosynthesi 97.0 0.00056 1.2E-08 57.2 3.0 21 43-63 225-245 (432)
388 PRK12289 GTPase RsgA; Reviewed 97.0 0.0023 5E-08 52.6 6.6 48 107-156 83-132 (352)
389 PRK12726 flagellar biosynthesi 97.0 0.0049 1.1E-07 51.1 8.4 20 43-62 208-227 (407)
390 PF13521 AAA_28: AAA domain; P 97.0 0.00051 1.1E-08 50.0 2.3 22 43-64 1-22 (163)
391 PF13555 AAA_29: P-loop contai 96.9 0.00098 2.1E-08 40.6 3.0 21 43-63 25-45 (62)
392 PRK11537 putative GTP-binding 96.9 0.0041 8.9E-08 50.5 7.4 22 43-64 6-27 (318)
393 COG3276 SelB Selenocysteine-sp 96.9 0.0059 1.3E-07 50.9 8.3 110 43-157 2-116 (447)
394 cd02042 ParA ParA and ParB of 96.9 0.0044 9.6E-08 41.4 6.5 82 44-137 2-84 (104)
395 PRK00771 signal recognition pa 96.9 0.0085 1.8E-07 50.7 9.4 86 90-179 176-267 (437)
396 KOG0066|consensus 96.9 0.0054 1.2E-07 51.6 7.8 97 43-145 615-753 (807)
397 cd02019 NK Nucleoside/nucleoti 96.9 0.0012 2.7E-08 41.0 3.1 21 44-64 2-22 (69)
398 PRK06731 flhF flagellar biosyn 96.9 0.0064 1.4E-07 48.2 7.8 133 43-179 77-246 (270)
399 PRK06217 hypothetical protein; 96.8 0.0011 2.5E-08 49.2 3.2 22 43-64 3-24 (183)
400 PRK10867 signal recognition pa 96.8 0.011 2.5E-07 49.8 9.5 87 89-179 183-275 (433)
401 cd03222 ABC_RNaseL_inhibitor T 96.8 0.0097 2.1E-07 44.2 8.1 22 43-64 27-48 (177)
402 PF00005 ABC_tran: ABC transpo 96.8 0.0012 2.5E-08 46.4 3.1 22 43-64 13-34 (137)
403 PRK00098 GTPase RsgA; Reviewed 96.8 0.0037 8.1E-08 50.2 6.2 46 110-157 77-124 (298)
404 TIGR00959 ffh signal recogniti 96.8 0.014 3E-07 49.3 9.5 88 89-180 182-275 (428)
405 cd01859 MJ1464 MJ1464. This f 96.8 0.0017 3.7E-08 46.8 3.7 50 104-156 3-53 (156)
406 PRK14737 gmk guanylate kinase; 96.8 0.0012 2.6E-08 49.4 2.9 22 43-64 6-27 (186)
407 COG1116 TauB ABC-type nitrate/ 96.7 0.0012 2.6E-08 51.2 2.9 22 43-64 31-52 (248)
408 PF13238 AAA_18: AAA domain; P 96.7 0.0016 3.4E-08 45.0 3.3 21 44-64 1-21 (129)
409 PF00004 AAA: ATPase family as 96.7 0.0015 3.3E-08 45.2 3.1 21 44-64 1-21 (132)
410 cd00071 GMPK Guanosine monopho 96.7 0.0015 3.2E-08 46.4 3.1 21 44-64 2-22 (137)
411 TIGR02322 phosphon_PhnN phosph 96.7 0.0015 3.2E-08 48.2 3.1 22 43-64 3-24 (179)
412 PF03205 MobB: Molybdopterin g 96.7 0.0017 3.7E-08 46.3 3.3 22 43-64 2-23 (140)
413 COG0194 Gmk Guanylate kinase [ 96.7 0.0013 2.8E-08 48.9 2.6 23 43-65 6-28 (191)
414 KOG1487|consensus 96.7 0.01 2.2E-07 46.5 7.6 87 43-133 61-156 (358)
415 COG3640 CooC CO dehydrogenase 96.6 0.015 3.2E-07 44.9 8.1 46 110-157 152-198 (255)
416 PRK10078 ribose 1,5-bisphospho 96.6 0.0018 3.9E-08 48.3 3.1 22 43-64 4-25 (186)
417 COG3845 ABC-type uncharacteriz 96.6 0.014 3E-07 49.5 8.5 19 45-63 34-52 (501)
418 smart00382 AAA ATPases associa 96.6 0.002 4.4E-08 44.3 3.2 23 43-65 4-26 (148)
419 PRK14530 adenylate kinase; Pro 96.6 0.0019 4E-08 49.3 3.2 21 43-63 5-25 (215)
420 TIGR03263 guanyl_kin guanylate 96.6 0.0017 3.8E-08 47.8 3.0 22 43-64 3-24 (180)
421 PF07728 AAA_5: AAA domain (dy 96.6 0.0021 4.5E-08 45.4 3.2 22 43-64 1-22 (139)
422 PRK14723 flhF flagellar biosyn 96.6 0.021 4.6E-07 51.3 10.1 21 43-63 187-207 (767)
423 COG1126 GlnQ ABC-type polar am 96.6 0.0024 5.1E-08 48.7 3.6 23 43-65 30-52 (240)
424 PRK03839 putative kinase; Prov 96.6 0.002 4.4E-08 47.6 3.2 22 43-64 2-23 (180)
425 PRK14738 gmk guanylate kinase; 96.6 0.0028 6.2E-08 48.1 3.8 22 43-64 15-36 (206)
426 COG1120 FepC ABC-type cobalami 96.6 0.0019 4.2E-08 50.6 2.9 20 44-63 31-50 (258)
427 KOG0463|consensus 96.6 0.0045 9.7E-08 50.9 5.0 34 31-64 123-156 (641)
428 COG1136 SalX ABC-type antimicr 96.5 0.002 4.4E-08 49.5 2.9 21 43-63 33-53 (226)
429 PRK13949 shikimate kinase; Pro 96.5 0.0025 5.5E-08 46.9 3.2 21 43-63 3-23 (169)
430 TIGR00150 HI0065_YjeE ATPase, 96.5 0.01 2.2E-07 42.0 6.0 22 43-64 24-45 (133)
431 PF04665 Pox_A32: Poxvirus A32 96.5 0.0024 5.2E-08 49.6 3.1 25 38-64 12-36 (241)
432 KOG3347|consensus 96.5 0.0025 5.3E-08 45.8 2.8 21 43-63 9-29 (176)
433 cd01983 Fer4_NifH The Fer4_Nif 96.5 0.03 6.5E-07 36.1 8.0 77 44-135 2-79 (99)
434 TIGR01360 aden_kin_iso1 adenyl 96.5 0.0024 5.3E-08 47.2 3.0 20 43-62 5-24 (188)
435 COG0523 Putative GTPases (G3E 96.5 0.025 5.4E-07 46.0 9.0 22 44-65 4-25 (323)
436 cd03238 ABC_UvrA The excision 96.5 0.0028 6.1E-08 47.0 3.2 20 43-62 23-42 (176)
437 PRK13851 type IV secretion sys 96.5 0.015 3.2E-07 47.7 7.6 23 42-64 163-185 (344)
438 PRK14531 adenylate kinase; Pro 96.4 0.0031 6.7E-08 46.9 3.3 21 43-63 4-24 (183)
439 PRK14532 adenylate kinase; Pro 96.4 0.0029 6.4E-08 47.0 3.2 21 43-63 2-22 (188)
440 PRK00300 gmk guanylate kinase; 96.4 0.0028 6E-08 47.8 3.1 22 43-64 7-28 (205)
441 PF13401 AAA_22: AAA domain; P 96.4 0.0031 6.8E-08 43.7 3.1 22 43-64 6-27 (131)
442 COG3840 ThiQ ABC-type thiamine 96.4 0.0079 1.7E-07 44.9 5.2 23 43-65 27-49 (231)
443 COG0488 Uup ATPase components 96.4 0.0079 1.7E-07 52.1 6.1 104 43-150 31-206 (530)
444 PRK08233 hypothetical protein; 96.4 0.003 6.5E-08 46.5 3.1 21 43-63 5-25 (182)
445 cd03111 CpaE_like This protein 96.4 0.031 6.7E-07 37.7 7.9 88 47-143 6-93 (106)
446 cd01428 ADK Adenylate kinase ( 96.4 0.0029 6.3E-08 47.1 3.0 22 43-64 1-22 (194)
447 cd00820 PEPCK_HprK Phosphoenol 96.4 0.0032 6.8E-08 42.8 2.8 20 43-62 17-36 (107)
448 cd02023 UMPK Uridine monophosp 96.4 0.0032 6.9E-08 47.3 3.1 20 44-63 2-21 (198)
449 cd01130 VirB11-like_ATPase Typ 96.4 0.0035 7.7E-08 46.7 3.2 22 43-64 27-48 (186)
450 PF02367 UPF0079: Uncharacteri 96.4 0.01 2.2E-07 41.3 5.3 22 43-64 17-38 (123)
451 TIGR00073 hypB hydrogenase acc 96.4 0.0037 8E-08 47.4 3.3 21 43-63 24-44 (207)
452 TIGR00235 udk uridine kinase. 96.3 0.0045 9.8E-08 46.9 3.8 21 43-63 8-28 (207)
453 PRK05480 uridine/cytidine kina 96.3 0.0043 9.4E-08 47.0 3.7 21 43-63 8-28 (209)
454 COG1121 ZnuC ABC-type Mn/Zn tr 96.3 0.0032 6.9E-08 49.3 2.9 21 43-63 32-52 (254)
455 PF05621 TniB: Bacterial TniB 96.3 0.0074 1.6E-07 48.3 5.0 23 43-65 63-85 (302)
456 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.3 0.0035 7.5E-08 47.8 3.1 22 43-64 32-53 (218)
457 COG3839 MalK ABC-type sugar tr 96.3 0.004 8.8E-08 50.7 3.6 21 44-64 32-52 (338)
458 PF13191 AAA_16: AAA ATPase do 96.3 0.0033 7.1E-08 46.2 2.8 21 43-63 26-46 (185)
459 PRK02496 adk adenylate kinase; 96.3 0.0041 8.8E-08 46.2 3.4 22 42-63 2-23 (184)
460 TIGR01313 therm_gnt_kin carboh 96.3 0.003 6.5E-08 45.9 2.6 21 44-64 1-21 (163)
461 PF13173 AAA_14: AAA domain 96.3 0.004 8.6E-08 43.5 3.1 24 43-66 4-27 (128)
462 PRK10751 molybdopterin-guanine 96.3 0.0035 7.6E-08 46.3 2.9 22 43-64 8-29 (173)
463 TIGR01359 UMP_CMP_kin_fam UMP- 96.3 0.0038 8.2E-08 46.2 3.1 20 44-63 2-21 (183)
464 PRK05057 aroK shikimate kinase 96.3 0.004 8.7E-08 45.9 3.2 22 43-64 6-27 (172)
465 TIGR01351 adk adenylate kinase 96.3 0.0038 8.2E-08 47.5 3.1 21 43-63 1-21 (210)
466 cd03225 ABC_cobalt_CbiO_domain 96.3 0.0037 7.9E-08 47.4 3.0 22 43-64 29-50 (211)
467 PRK00625 shikimate kinase; Pro 96.3 0.0043 9.4E-08 45.9 3.2 21 43-63 2-22 (173)
468 TIGR00960 3a0501s02 Type II (G 96.3 0.0038 8.3E-08 47.5 3.1 22 43-64 31-52 (216)
469 TIGR01166 cbiO cobalt transpor 96.3 0.0037 8E-08 46.6 2.9 22 43-64 20-41 (190)
470 KOG2485|consensus 96.3 0.0066 1.4E-07 48.6 4.3 25 41-65 143-167 (335)
471 COG1703 ArgK Putative periplas 96.3 0.01 2.2E-07 47.4 5.3 60 88-156 142-201 (323)
472 cd01131 PilT Pilus retraction 96.2 0.023 5.1E-07 42.8 7.1 21 44-64 4-24 (198)
473 TIGR02673 FtsE cell division A 96.2 0.004 8.7E-08 47.3 2.9 22 43-64 30-51 (214)
474 cd03261 ABC_Org_Solvent_Resist 96.2 0.004 8.6E-08 48.1 2.9 22 43-64 28-49 (235)
475 COG3638 ABC-type phosphate/pho 96.2 0.004 8.6E-08 48.1 2.8 21 43-63 32-52 (258)
476 cd03292 ABC_FtsE_transporter F 96.2 0.0045 9.6E-08 47.0 3.1 22 43-64 29-50 (214)
477 PF05729 NACHT: NACHT domain 96.2 0.0044 9.5E-08 44.5 3.0 20 44-63 3-22 (166)
478 cd03226 ABC_cobalt_CbiO_domain 96.2 0.0059 1.3E-07 46.1 3.7 22 43-64 28-49 (205)
479 cd03269 ABC_putative_ATPase Th 96.2 0.0043 9.3E-08 47.0 3.0 22 43-64 28-49 (210)
480 PRK15177 Vi polysaccharide exp 96.2 0.0054 1.2E-07 46.8 3.5 22 43-64 15-36 (213)
481 TIGR02315 ABC_phnC phosphonate 96.2 0.0042 9E-08 48.1 2.9 22 43-64 30-51 (243)
482 PRK13900 type IV secretion sys 96.2 0.023 4.9E-07 46.5 7.2 24 42-65 161-184 (332)
483 cd03264 ABC_drug_resistance_li 96.2 0.0044 9.6E-08 47.0 2.9 22 43-64 27-48 (211)
484 cd02036 MinD Bacterial cell di 96.2 0.042 9.1E-07 40.1 8.1 64 91-157 64-127 (179)
485 cd03259 ABC_Carb_Solutes_like 96.2 0.0048 1E-07 46.8 3.1 22 43-64 28-49 (213)
486 cd00464 SK Shikimate kinase (S 96.2 0.005 1.1E-07 44.0 3.1 21 43-63 1-21 (154)
487 cd03229 ABC_Class3 This class 96.2 0.0047 1E-07 45.7 3.0 22 43-64 28-49 (178)
488 cd03293 ABC_NrtD_SsuB_transpor 96.2 0.006 1.3E-07 46.6 3.6 22 43-64 32-53 (220)
489 cd03262 ABC_HisP_GlnQ_permease 96.2 0.0049 1.1E-07 46.7 3.1 22 43-64 28-49 (213)
490 PRK13541 cytochrome c biogenes 96.2 0.0067 1.5E-07 45.5 3.8 23 43-65 28-50 (195)
491 cd03265 ABC_DrrA DrrA is the A 96.2 0.0049 1.1E-07 47.1 3.1 22 43-64 28-49 (220)
492 TIGR03608 L_ocin_972_ABC putat 96.2 0.0066 1.4E-07 45.8 3.8 22 43-64 26-47 (206)
493 cd03260 ABC_PstB_phosphate_tra 96.2 0.0051 1.1E-07 47.2 3.2 23 43-65 28-50 (227)
494 COG1117 PstB ABC-type phosphat 96.1 0.0041 8.8E-08 47.4 2.5 19 44-62 36-54 (253)
495 cd02025 PanK Pantothenate kina 96.1 0.0048 1E-07 47.4 3.0 20 44-63 2-21 (220)
496 COG0396 sufC Cysteine desulfur 96.1 0.0079 1.7E-07 46.3 4.1 28 45-75 34-61 (251)
497 cd03224 ABC_TM1139_LivF_branch 96.1 0.0045 9.8E-08 47.2 2.8 22 43-64 28-49 (222)
498 PRK13540 cytochrome c biogenes 96.1 0.007 1.5E-07 45.6 3.8 22 43-64 29-50 (200)
499 PRK13947 shikimate kinase; Pro 96.1 0.0055 1.2E-07 44.7 3.2 21 43-63 3-23 (171)
500 cd02021 GntK Gluconate kinase 96.1 0.0055 1.2E-07 43.8 3.1 21 44-64 2-22 (150)
No 1
>KOG0084|consensus
Probab=100.00 E-value=1.2e-36 Score=222.08 Aligned_cols=146 Identities=50% Similarity=0.872 Sum_probs=132.9
Q ss_pred CCCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccC
Q psy1417 35 GPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGT 114 (188)
Q Consensus 35 ~~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~ 114 (188)
...+.| ||+++|+.|||||+|+.||.++.|.+.|.+|+|.++..+.+.++|+.+++++|||.||++|+.+...||+++
T Consensus 5 ~~dylF--KiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 5 EYDYLF--KIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred ccceEE--EEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 445667 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 115 HGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 115 ~~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++|+|||+++++||.++..|+.+++++. +++|.++ |||+|+ .++.++.+ +++.+++...++|+|.++
T Consensus 83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~ 156 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKD 156 (205)
T ss_pred CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCC
Confidence 99999999999999999999999999976 4567666 999999 66766644 788888888888888654
No 2
>KOG0098|consensus
Probab=100.00 E-value=1.7e-32 Score=198.52 Aligned_cols=142 Identities=37% Similarity=0.700 Sum_probs=127.3
Q ss_pred CcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCE
Q psy1417 37 THIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHG 116 (188)
Q Consensus 37 ~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 116 (188)
.+.+ |++++|+.|||||+|+.||.++.|.+.++.|+|.++..+.++++++++++++|||.|++.|+.....||+.+.+
T Consensus 4 ~~~f--KyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 4 AYLF--KYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred cceE--EEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 3455 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeecc
Q psy1417 117 VIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSV 181 (188)
Q Consensus 117 vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~ 181 (188)
++||||+++++||..+..|+..++++. +|..|++ |||+|| ..|.|+++ .+|.++++. ++|+|-+
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLi-fmETSak 151 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLI-FMETSAK 151 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCce-eehhhhh
Confidence 999999999999999999999999974 8888887 999999 55666654 577776654 4466543
No 3
>KOG0094|consensus
Probab=99.98 E-value=1.3e-31 Score=195.41 Aligned_cols=140 Identities=33% Similarity=0.605 Sum_probs=123.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+|++++|+.+|||||||.|++.+.|...|.+|+|.+|..+.+.+.+..+.|++|||.||++|+.+.+.|++++.++|+||
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVy 102 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 102 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEE
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCCC--ceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNCEV--VNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~~~--~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++..||+...+|++.+++.... +.|++ |||.|| +.|++..+ ..+++.+. .++|++.+.
T Consensus 103 Dit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a-~f~etsak~ 169 (221)
T KOG0094|consen 103 DITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNA-EFIETSAKA 169 (221)
T ss_pred eccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCc-EEEEecccC
Confidence 999999999999999999996533 44444 999999 56666544 45566666 777776543
No 4
>KOG0092|consensus
Probab=99.98 E-value=1.9e-31 Score=194.19 Aligned_cols=142 Identities=34% Similarity=0.596 Sum_probs=125.6
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
++|++++|+.+||||||+.|+..+.|.+...||+|.-|..+.+.+++..+++.+|||.|+++|..+-++||++++++|+|
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivv 84 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVV 84 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEE
Confidence 34999999999999999999999999987789999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccchhh--hhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSIDEV--NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~~~--~~~~~~~~~~~~e~~~~~ 182 (188)
||+++.+||..++.|+.++.++. |++.|.+ |||+|| ..|.++.+ +.-++.....++|+|.++
T Consensus 85 YDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKT 151 (200)
T KOG0092|consen 85 YDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKT 151 (200)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEeccc
Confidence 99999999999999999999965 5566666 999999 44666643 444445667788888765
No 5
>KOG0078|consensus
Probab=99.98 E-value=3.2e-31 Score=196.08 Aligned_cols=145 Identities=44% Similarity=0.813 Sum_probs=130.9
Q ss_pred CCCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccC
Q psy1417 35 GPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGT 114 (188)
Q Consensus 35 ~~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~ 114 (188)
..++.+ ||+++|+++||||+|+.+|..+.|...+..|+|.++..+.+..++..+.+++|||.|+++|..+...|+++|
T Consensus 8 ~~d~~~--kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA 85 (207)
T KOG0078|consen 8 DYDYLF--KLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGA 85 (207)
T ss_pred CcceEE--EEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhc
Confidence 566777 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhCC-CceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 115 HGVIVVYDVTSGETFANVKRWLHEIENNCE-VVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 115 ~~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
+++++|||+++.+||+++..|+..+.++.+ .+|+++ |||+|+ .+|+++.+ ++|.+. ...++|+|-++
T Consensus 86 ~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~-G~~F~EtSAk~ 158 (207)
T KOG0078|consen 86 MGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREY-GIKFFETSAKT 158 (207)
T ss_pred CeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHh-CCeEEEccccC
Confidence 999999999999999999999999999775 688776 999999 56777755 577766 45677887554
No 6
>KOG0080|consensus
Probab=99.97 E-value=2.1e-31 Score=188.56 Aligned_cols=146 Identities=42% Similarity=0.748 Sum_probs=126.3
Q ss_pred CCCCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhcccc
Q psy1417 34 NGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113 (188)
Q Consensus 34 ~~~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ 113 (188)
.+....+ ||+++|+.|||||+|+.+|..+.|.+....|+|+++..+.+.++|..+++.+|||.|+++|+.+.+.||++
T Consensus 6 s~~~~t~--KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRg 83 (209)
T KOG0080|consen 6 SGYDTTF--KILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRG 83 (209)
T ss_pred cCcceeE--EEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhcc
Confidence 3445556 99999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhCCC--ce-EEEEEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 114 THGVIVVYDVTSGETFANVKRWLHEIENNCEV--VN-RILGLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 114 ~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~--~p-ilvgnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
+.++|+|||++.+++|.++..|+.++..++.+ +. ++||||+|. .+|.++.+ +++.++.+ -++|++.++
T Consensus 84 aqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~-LFiE~SAkt 158 (209)
T KOG0080|consen 84 AQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRC-LFIECSAKT 158 (209)
T ss_pred CceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCc-EEEEcchhh
Confidence 99999999999999999999999999998855 43 445999998 46777754 45655543 456766543
No 7
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.97 E-value=1.4e-30 Score=194.49 Aligned_cols=141 Identities=21% Similarity=0.485 Sum_probs=124.5
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
.+||+++|+.|||||||+.++..+.|.+.+.||++..+. +.+.+++..+.+.+|||+|+++|..+++.+++++|++++|
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilv 83 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC 83 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEE
Confidence 459999999999999999999999999999999987664 6678899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHhhCCCceEEE-EEcCCCCC-------------ccchhh---hhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANV-KRWLHEIENNCEVVNRIL-GLRLGLNQ-------------RSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~-~~~~~~i~~~~~~~pilv-gnK~Dl~~-------------~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
||++++.||+++ ..|++++.+..+++|++| |||+|+.+ +.++.+ +++.+.++..++|+|.++
T Consensus 84 yDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~ 163 (182)
T cd04172 84 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 163 (182)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCC
Confidence 999999999997 799999999888889887 99999842 234432 677777777899998765
No 8
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=1.9e-30 Score=193.19 Aligned_cols=141 Identities=21% Similarity=0.484 Sum_probs=124.0
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
++||+++|+.|||||||++++..+.|+..+.||++..+. +.+.+++..+.+.+|||+|++.|..+++.+++++|++++|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 359999999999999999999999999999999987764 6778899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHhhCCCceEEE-EEcCCCCC-------------ccchh---hhhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANV-KRWLHEIENNCEVVNRIL-GLRLGLNQ-------------RSIDE---VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~-~~~~~~i~~~~~~~pilv-gnK~Dl~~-------------~~i~~---~~~~~~~~~~~~~e~~~~~ 182 (188)
||+++++||+.+ ..|+..+.+..+++|+++ |||+|+.+ +.++. .+++.+.++..++|+|.++
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 999999999996 799999999888899887 99999842 23432 2688887877899998775
No 9
>KOG0394|consensus
Probab=99.97 E-value=3.8e-31 Score=191.17 Aligned_cols=143 Identities=33% Similarity=0.634 Sum_probs=131.8
Q ss_pred cccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEE
Q psy1417 38 HIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 117 (188)
Q Consensus 38 ~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~v 117 (188)
.++ ||+++|++|+|||||.+++.+.+|...|..|+|.++..+.+.++++.+.++||||.|+++|..+...+++++|++
T Consensus 8 ~lL--KViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 8 TLL--KVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cce--EEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 446 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhC-----CCceEEE-EEcCCCCC---ccchhh---hhhhcCCCCceEEeeccc
Q psy1417 118 IVVYDVTSGETFANVKRWLHEIENNC-----EVVNRIL-GLRLGLNQ---RSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 118 ilv~d~~~~~s~~~~~~~~~~i~~~~-----~~~pilv-gnK~Dl~~---~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
++|||+++.+||+.+..|..++..+. +..|.+| |||+|++. |+++.. .+|+..+-..+||+|.++
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~ 162 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKE 162 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccc
Confidence 99999999999999999999998744 2368777 99999944 777755 899999999999999876
No 10
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=2.4e-30 Score=199.49 Aligned_cols=145 Identities=20% Similarity=0.450 Sum_probs=126.8
Q ss_pred CcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCE
Q psy1417 37 THIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHG 116 (188)
Q Consensus 37 ~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 116 (188)
+....+||+++|+.|||||||+++|..+.|.+.|.||++.++. ..+.+++..+.+.+|||+|+++|..+.+.+++++|+
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 3355679999999999999999999999999999999997775 467889999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHhhCCCceEEE-EEcCCCCC-------------ccchh---hhhhhcCCCCceEEe
Q psy1417 117 VIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL-GLRLGLNQ-------------RSIDE---VNLCHRGSVDGSVES 178 (188)
Q Consensus 117 vilv~d~~~~~s~~~~-~~~~~~i~~~~~~~pilv-gnK~Dl~~-------------~~i~~---~~~~~~~~~~~~~e~ 178 (188)
+++|||+++++||+.+ ..|+.++.+..+++|+++ |||+|+.+ +.++. +++|.+.++..++|+
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~Et 167 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLEC 167 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEc
Confidence 9999999999999985 799999998888888777 99999942 34443 278888887789999
Q ss_pred eccc
Q psy1417 179 TSVD 182 (188)
Q Consensus 179 ~~~~ 182 (188)
|.++
T Consensus 168 SAkt 171 (232)
T cd04174 168 SAFT 171 (232)
T ss_pred cCCc
Confidence 8876
No 11
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.97 E-value=2.5e-30 Score=192.12 Aligned_cols=140 Identities=29% Similarity=0.540 Sum_probs=122.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|+.|||||||+.++..+.|.++|.||++..+. ..+.+++..+.+.+|||+|+++|..++..++++++++++||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 39999999999999999999999999999999987664 56778899999999999999999999999999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHhhCCCceEEE-EEcCCCCC-c----------cchh---hhhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANV-KRWLHEIENNCEVVNRIL-GLRLGLNQ-R----------SIDE---VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~-~~~~~~i~~~~~~~pilv-gnK~Dl~~-~----------~i~~---~~~~~~~~~~~~~e~~~~~ 182 (188)
|+++++||+++ ..|+.++.+..+++|++| |||+|+.+ + .++. .+++...+...++|+|.++
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~ 157 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKT 157 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCc
Confidence 99999999998 689999988778899888 99999933 2 2333 2677777766789998765
No 12
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.97 E-value=3.8e-30 Score=193.22 Aligned_cols=140 Identities=36% Similarity=0.611 Sum_probs=124.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|+.|||||||+.+|..+.+...+.++++.++....+.+++..+.+.+||++|+++|..+++.+++++|++++||
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVf 86 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVY 86 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEE
Confidence 39999999999999999999999998888899999888888889999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++++||+++..|+.++.+..+++|++| |||+|+ ..+.++.+ +++...+ ..++|+|.++
T Consensus 87 D~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~-~~~~e~SAk~ 151 (189)
T cd04121 87 DITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNG-MTFFEVSPLC 151 (189)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcC-CEEEEecCCC
Confidence 99999999999999999988888899888 999999 34555433 5666665 4688998654
No 13
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.97 E-value=4.5e-30 Score=194.60 Aligned_cols=140 Identities=41% Similarity=0.744 Sum_probs=122.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
.|+++|+.|||||||+++|..+.|.+.+.+|++.++..+.+.+++..+.+.+||++|+++|..++..+++++|++++|||
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfD 81 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYD 81 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEE
Confidence 78999999999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 123 VTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
+++++||+++..|+..+.+.. +++|+++ |||+|+ .++.+... +++.+.....++|+|.++
T Consensus 82 vtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAkt 147 (202)
T cd04120 82 ITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKD 147 (202)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCC
Confidence 999999999999999988754 5688887 999999 45655543 455554335688888665
No 14
>KOG0079|consensus
Probab=99.97 E-value=1e-30 Score=182.76 Aligned_cols=143 Identities=63% Similarity=1.012 Sum_probs=124.8
Q ss_pred CcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCE
Q psy1417 37 THIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHG 116 (188)
Q Consensus 37 ~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 116 (188)
...+ |.+|+|++|||||+|+.+|..+.|...|..|+|+++..+.+.++|..+++.|||+.|+++|+.+...|+++.++
T Consensus 6 dhLf--kllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthg 83 (198)
T KOG0079|consen 6 DHLF--KLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHG 83 (198)
T ss_pred HHHH--HHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCce
Confidence 3456 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCc-cchhh---hhhhcCCCCceEEeeccc
Q psy1417 117 VIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQR-SIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 117 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~-~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
+++|||+++.+||.+.+.|+++++.+++.+|-++ |||.|.++| .+..+ .++...+ ...||++-++
T Consensus 84 v~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mg-ie~FETSaKe 153 (198)
T KOG0079|consen 84 VIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMG-IELFETSAKE 153 (198)
T ss_pred EEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcC-chheehhhhh
Confidence 9999999999999999999999999999988555 999999554 34333 3444433 4456776544
No 15
>KOG0087|consensus
Probab=99.97 E-value=4.4e-30 Score=189.50 Aligned_cols=146 Identities=41% Similarity=0.666 Sum_probs=128.8
Q ss_pred CCCCCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccc
Q psy1417 33 KNGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYR 112 (188)
Q Consensus 33 ~~~~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~ 112 (188)
+...++.| ||+++|+++||||-|+.|+..+.|..+..+|+|+++..+.+.++++.++.+||||.|+++|+.....||+
T Consensus 8 ~~~~dylF--KiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYr 85 (222)
T KOG0087|consen 8 SEEYDYLF--KIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYR 85 (222)
T ss_pred ccccceEE--EEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhc
Confidence 35667778 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccch--hhhhhhcCCCCceEEeec
Q psy1417 113 GTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSID--EVNLCHRGSVDGSVESTS 180 (188)
Q Consensus 113 ~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~--~~~~~~~~~~~~~~e~~~ 180 (188)
++.+.++|||++...+|+++..|+.+++.+. ++++|++ |||+|| ..|.+. +.+..++...-.++|++.
T Consensus 86 gAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSA 158 (222)
T KOG0087|consen 86 GAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSA 158 (222)
T ss_pred ccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecc
Confidence 9999999999999999999999999999977 7788887 999999 334444 335555555566677764
No 16
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.97 E-value=2.3e-29 Score=189.31 Aligned_cols=140 Identities=28% Similarity=0.508 Sum_probs=120.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|+.+||||||+.++..+.|.+.+.||++..+. ..+.+++..+.+.+|||+|+++|..+++.+++++|++|+||
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvy 82 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICF 82 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEE
Confidence 49999999999999999999999999999999987664 45678899999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCCC-Cc------------cchh---hhhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGLN-QR------------SIDE---VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl~-~~------------~i~~---~~~~~~~~~~~~~e~~~~~ 182 (188)
|+++++||+++. .|+..+.+..+++|++| |||+|+. ++ .++. .+++.+.+...++|+|.++
T Consensus 83 dit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~ 161 (191)
T cd01875 83 SIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALN 161 (191)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Confidence 999999999997 69998888778899888 9999993 22 1221 2566666767899998765
No 17
>KOG0086|consensus
Probab=99.97 E-value=7e-30 Score=179.63 Aligned_cols=145 Identities=37% Similarity=0.666 Sum_probs=128.9
Q ss_pred CCCCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhcccc
Q psy1417 34 NGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113 (188)
Q Consensus 34 ~~~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ 113 (188)
+..++.+ |++++|+.|.|||+|+.+|+.++|.++..-|+|.++.++.+++.++.+++++|||.|+++|+.....|+++
T Consensus 4 EtYDyLf--Kfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 4 ETYDYLF--KFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred hhhhhhh--eeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 3455667 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhh-CCCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeecc
Q psy1417 114 THGVIVVYDVTSGETFANVKRWLHEIENN-CEVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSV 181 (188)
Q Consensus 114 ~~~vilv~d~~~~~s~~~~~~~~~~i~~~-~~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~ 181 (188)
+.+.++|||++++++|+.+..|+..++.. .+++.|++ |||.|| .+|+++-. ++|.++.+ .+.|+++.
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel-~flETSa~ 154 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENEL-MFLETSAL 154 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccce-eeeeeccc
Confidence 99999999999999999999999999984 46777777 999999 56666533 67777766 66777654
No 18
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.97 E-value=3.6e-29 Score=192.00 Aligned_cols=140 Identities=23% Similarity=0.504 Sum_probs=122.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+|+|+.|||||||+.+|..+.|++.|.||++.++. ..+.+++..+.+.+||++|++.|...++.+++++|++++||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 59999999999999999999999999999999987775 57788999999999999999999999999999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHhhCCCceEEE-EEcCCCCCc-------------cch---hhhhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANV-KRWLHEIENNCEVVNRIL-GLRLGLNQR-------------SID---EVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~-~~~~~~i~~~~~~~pilv-gnK~Dl~~~-------------~i~---~~~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++|+.+ ..|..++....+++|++| |||+|+... .++ ..+++.+.++..++|+|+++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 99999999999 469888888888899888 999999321 133 22677777778999998775
No 19
>KOG0093|consensus
Probab=99.97 E-value=1.4e-29 Score=176.97 Aligned_cols=144 Identities=37% Similarity=0.739 Sum_probs=129.3
Q ss_pred CcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCE
Q psy1417 37 THIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHG 116 (188)
Q Consensus 37 ~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 116 (188)
++.+ |++++|+..+|||||+.++.+..|...+-+|+|.++..+.+.-..+.+++++|||.|+++|+.+...+++++++
T Consensus 19 Dymf--KlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamg 96 (193)
T KOG0093|consen 19 DYMF--KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMG 96 (193)
T ss_pred ccee--eEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccce
Confidence 3445 99999999999999999999999999999999999999988777888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeecccc
Q psy1417 117 VIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVDY 183 (188)
Q Consensus 117 vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~~ 183 (188)
+|+|||+++.+||..++.|...+...+ .++|+++ |||||| ++|.++-+ .++++.|. .+||+++++.
T Consensus 97 fiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf-efFEtSaK~N 168 (193)
T KOG0093|consen 97 FILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF-EFFETSAKEN 168 (193)
T ss_pred EEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhCh-HHhhhccccc
Confidence 999999999999999999999999866 6788887 999999 67777755 57777776 6788877654
No 20
>KOG0095|consensus
Probab=99.96 E-value=7.1e-30 Score=179.00 Aligned_cols=124 Identities=44% Similarity=0.797 Sum_probs=113.5
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
-+||+++|..|+|||+|+++|..+-|++.-..|+|.++..+.+.++|..+++++|||.|+++|+.+.+.|++.++++|+|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhCCC--ceEEEEEcCCC-CCccchhh
Q psy1417 121 YDVTSGETFANVKRWLHEIENNCEV--VNRILGLRLGL-NQRSIDEV 164 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~~~~~--~pilvgnK~Dl-~~~~i~~~ 164 (188)
||++.+.+|+.+.+|+.++..+..+ +.|+||||.|+ ++|.++..
T Consensus 87 ydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~q 133 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQ 133 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHH
Confidence 9999999999999999999996644 34566999999 44566544
No 21
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.96 E-value=1.3e-28 Score=182.86 Aligned_cols=140 Identities=29% Similarity=0.502 Sum_probs=119.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++..+.|++.+.||++..+. ..+.+++..+.+.+||++|++++...+..+++++|++++||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 49999999999999999999999999999999987775 45678888999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCCCC-------------ccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGLNQ-------------RSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl~~-------------~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++|+.+. .|+..+.+..+++|++| |||+|+.+ +.++.+ +++.+.+...++|+|.++
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999997 59999988778899888 99999832 223222 355555667889998665
No 22
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.96 E-value=1.1e-28 Score=180.10 Aligned_cols=139 Identities=34% Similarity=0.632 Sum_probs=127.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|+.+||||||+++|.++.+.+.+.+|+|.++....+.+++..+.+.+||++|++++...+..+++.+|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhCC-CceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 123 VTSGETFANVKRWLHEIENNCE-VVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~~~-~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
+++++||+.+..|+..+....+ ++|++| |||.|+. .+.++.+ +++.+.+ ..++|+++++
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~ 145 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-VPYFEVSAKN 145 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT-SEEEEEBTTT
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhC-CEEEEEECCC
Confidence 9999999999999999999887 689888 9999995 4666533 6888888 9999999876
No 23
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.96 E-value=1.9e-28 Score=183.04 Aligned_cols=140 Identities=21% Similarity=0.467 Sum_probs=119.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|+.|||||||+++|..+.|.+.|.||+|.++..+.+.+++..+.+.+||++|++.|..+++.+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 39999999999999999999999999999999999998888889999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCC-CceEEEEEcCCCCC-------ccchh--hhhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNCE-VVNRILGLRLGLNQ-------RSIDE--VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~~-~~pilvgnK~Dl~~-------~~i~~--~~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++|+++..|+.++.+..+ ..|++||||+|+.. +.+.+ .+++...+ ..++++|.++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~e~SAk~ 150 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-APLIFCSTSH 150 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcC-CEEEEEeCCC
Confidence 99999999999999999987543 47777799999821 11221 24566655 4678888654
No 24
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=2.4e-28 Score=185.05 Aligned_cols=141 Identities=35% Similarity=0.658 Sum_probs=122.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeC-CeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVN-GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
+||+++|++|||||||+++|..+.+...+.+|++.++....+.++ +..+.+.+||++|++++..+++.++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 499999999999999999999999999999999998888888887 7889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhC-----CCceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANVKRWLHEIENNC-----EVVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~~~-----~~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
||++++++|+.+..|+..+.... .++|++| |||+|+. .+.+..+ +++...+...++++|.++
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~ 152 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKE 152 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCC
Confidence 99999999999999999887632 5688887 9999994 3444332 667777767889998765
No 25
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.96 E-value=3.1e-28 Score=178.79 Aligned_cols=140 Identities=39% Similarity=0.657 Sum_probs=120.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++..+.+...+.+|++.++....+.+++..+.+.+||++|++++...+..++++++++++||
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 82 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 82 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence 49999999999999999999999999888899998888888888999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++|+.+..|+..+.... ++.|+++ |||+|+ .++.++.+ +++...+ ..++|+|.++
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~ 148 (166)
T cd04122 83 DITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENG-LLFLECSAKT 148 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcC-CEEEEEECCC
Confidence 9999999999999999987753 5688877 999999 34444422 4555444 4678887665
No 26
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=5.7e-28 Score=185.42 Aligned_cols=141 Identities=26% Similarity=0.441 Sum_probs=122.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|+.|||||||++++..+.+...+.+|+|.++....+..++..+.+.+||++|+++|..++..+++.++++|+||
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvf 93 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEE
Confidence 39999999999999999999999999999999999888888888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCccchhh--hhhhcCCCCceEEeecccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSIDEV--NLCHRGSVDGSVESTSVDY 183 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~~~--~~~~~~~~~~~~e~~~~~~ 183 (188)
|++++++|+.+..|+..+.+..+++|+++ |||+|+..+.+... +++... ...++|+|.++.
T Consensus 94 D~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~-~~~~~e~SAk~~ 157 (219)
T PLN03071 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-NLQYYEISAKSN 157 (219)
T ss_pred eCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhc-CCEEEEcCCCCC
Confidence 99999999999999999998888899888 99999954444322 444333 346788887663
No 27
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.96 E-value=8.2e-28 Score=176.01 Aligned_cols=140 Identities=39% Similarity=0.738 Sum_probs=120.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++..+.+.+.+.+|++.++....+.+++..+.+.+||++|++++...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 38999999999999999999999999889999998888888888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCC-CceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNCE-VVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~~-~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++++||+.+..|+..+.+..+ ++|+++ |||.|+ .++.+..+ .++...+ ..++|+|.++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~ 146 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYG-MDFFETSACT 146 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcC-CEEEEEeCCC
Confidence 99999999999999999987654 578877 999999 45554322 4444444 5688888765
No 28
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.96 E-value=9.4e-28 Score=176.64 Aligned_cols=140 Identities=27% Similarity=0.519 Sum_probs=121.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++++.+.+...+.+|++.++....+..++..+.+.+||++|++.+...+..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 39999999999999999999999988889999998888777777888899999999999999988899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCccch-hh-hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSID-EV-NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~-~~-~~~~~~~~~~~~e~~~~~ 182 (188)
|+++.++++.+..|+..+.+..+++|+++ |||+|+..+.+. +. +++ +.....++|+|+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~e~Sa~~ 143 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFH-RKKNLQYYEISAKS 143 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHH-HHcCCEEEEEeCCC
Confidence 99999999999999999999887899888 999999544433 22 233 33456688998765
No 29
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=9.5e-28 Score=181.73 Aligned_cols=135 Identities=21% Similarity=0.394 Sum_probs=114.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeC-----CeEEEEEEEeCCCcccccccchhccccCCE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVN-----GEKVKLQIWDTAGQERFRTITSTYYRGTHG 116 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 116 (188)
+||+++|+.+||||||++++..+.|.+.+.+|+|.++..+.+.++ +..+.+.+||++|+++|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 499999999999999999999999999999999988877777664 567999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhh--------------------CCCceEEE-EEcCCC-CCccchhh-------hhh
Q psy1417 117 VIVVYDVTSGETFANVKRWLHEIENN--------------------CEVVNRIL-GLRLGL-NQRSIDEV-------NLC 167 (188)
Q Consensus 117 vilv~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~pilv-gnK~Dl-~~~~i~~~-------~~~ 167 (188)
+|+|||+++++||+++..|+.++.+. .+++|++| |||+|+ +++.++.. .++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 99999999999999999999999763 13589888 999999 45544433 345
Q ss_pred hcCCCCceE
Q psy1417 168 HRGSVDGSV 176 (188)
Q Consensus 168 ~~~~~~~~~ 176 (188)
++.+++...
T Consensus 161 ~~~~~~~i~ 169 (202)
T cd04102 161 EQGNAEEIN 169 (202)
T ss_pred HhcCCceEE
Confidence 555665443
No 30
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.96 E-value=1.4e-27 Score=177.13 Aligned_cols=140 Identities=29% Similarity=0.530 Sum_probs=118.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+.++..+.|..++.||++..+ ...+.+++..+.+.+||++|++.+...++.+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 5999999999999999999999999999999987444 456678888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCCCCc-------------cchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGLNQR-------------SIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl~~~-------------~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++++||+++. .|+..+....+++|++| |||+|+.+. .++.+ +++.+.+...++|+|.++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999996 69998888777899888 999999321 12222 466666666888998654
No 31
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.96 E-value=2.4e-27 Score=174.53 Aligned_cols=141 Identities=33% Similarity=0.601 Sum_probs=122.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|+++||||||++++..+.+...+.++++.++....+.+++..+.+.+||++|++++..++..+++.+|++++||
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTF 85 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEE
Confidence 49999999999999999999999998888899998887788888999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-----CCceEEE-EEcCCCCCccchh---hhhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-----EVVNRIL-GLRLGLNQRSIDE---VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-----~~~pilv-gnK~Dl~~~~i~~---~~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++++.+..|+.++.... +++|+++ |||+|+..+.+.. .+++.+.+...++++|.++
T Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 155 (170)
T cd04116 86 AVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKD 155 (170)
T ss_pred ECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCC
Confidence 9999999999999999887643 4578887 9999996554433 2566777767788988765
No 32
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.96 E-value=2.6e-27 Score=173.82 Aligned_cols=140 Identities=38% Similarity=0.726 Sum_probs=118.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++.++++...+.+|++.++....+..++..+.+.+||++|++++...+..++++++++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 49999999999999999999999998889999998888777777888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++.++|+.+..|+..+.+.. +++|+++ |||+|+. .+.+..+ +++...+. .++++|.++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 147 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGF-EFFEASAKE 147 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCC-EEEEEECCC
Confidence 9999999999999999998765 4688887 9999993 3433322 44555444 578887654
No 33
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.96 E-value=2.4e-27 Score=173.45 Aligned_cols=140 Identities=26% Similarity=0.475 Sum_probs=117.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++..+.+.+.+.++.+.++.......++..+.+.+||++|+++|..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 39999999999999999999999998888888887777777778888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCccchh-hhhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSIDE-VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~~-~~~~~~~~~~~~~e~~~~~ 182 (188)
|++++.+++.+..|+..+.+..+++|+++ +||+|+......+ .+++...+ ..++++|+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 142 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQKKFNFAEKHN-LPLYYVSAAD 142 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHHHHHHHHHHHcC-CeEEEEeCCC
Confidence 99999999999999999988877889888 9999984322222 23444333 3567777654
No 34
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.96 E-value=1.8e-27 Score=176.16 Aligned_cols=139 Identities=28% Similarity=0.414 Sum_probs=117.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++..+.|...+.+|++..+. ..+.+++..+.+.+||++|++++..++..+++.+|++++||
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 49999999999999999999999999889999986554 56778898999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++.||+.+..|...+.+. .+++|+++ |||+|+ .++.++.+ +++...+. .++|+|..+
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sa~~ 148 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNC-PFFETSAAL 148 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCC-EEEEEecCC
Confidence 999999999999998888763 35689887 999998 45555533 45555554 678888665
No 35
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.96 E-value=1.4e-27 Score=180.66 Aligned_cols=135 Identities=24% Similarity=0.515 Sum_probs=118.5
Q ss_pred EeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEeCCCh
Q psy1417 47 LQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSG 126 (188)
Q Consensus 47 vG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~ 126 (188)
+|+.|||||||+++++.+.+.+.+.+|+|.++....+.+++..+.+.+||++|+++|..++..++++++++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888999999999888888899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCccchhh--hhhhcCCCCceEEeeccc
Q psy1417 127 ETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSIDEV--NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 127 ~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~~~--~~~~~~~~~~~~e~~~~~ 182 (188)
.||+.+..|+.++.+..+++|+++ |||+|+..+.+..+ +++...+ ..++|+|.++
T Consensus 81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~-~~~~e~SAk~ 138 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKN-LQYYDISAKS 138 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcC-CEEEEEeCCC
Confidence 999999999999999888899888 99999955444332 4444433 4688888765
No 36
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.95 E-value=3.6e-27 Score=173.40 Aligned_cols=140 Identities=47% Similarity=0.868 Sum_probs=119.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++.++.|.+.+.++++.++....+.+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~ 83 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVY 83 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEE
Confidence 49999999999999999999999999999999998888888888888899999999999999988889999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++|+.+..|+..+.+.. .++|+++ |||+|+. ++.+..+ +++...+. .++++|+.+
T Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 149 (167)
T cd01867 84 DITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGI-KFLETSAKA 149 (167)
T ss_pred ECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999999999998854 4688777 9999994 4444322 34444443 578887665
No 37
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.95 E-value=2.8e-27 Score=175.72 Aligned_cols=140 Identities=35% Similarity=0.723 Sum_probs=118.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeC----------CeEEEEEEEeCCCcccccccchhcc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVN----------GEKVKLQIWDTAGQERFRTITSTYY 111 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~----------~~~~~l~l~D~~g~~~~~~~~~~~~ 111 (188)
+||+++|++|||||||++++..+.+.+.+.+|++.++....+.+. +..+.+.+||++|++++...+..++
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 84 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFF 84 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHh
Confidence 399999999999999999999999999999999988877766654 4568899999999999999999999
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 112 RGTHGVIVVYDVTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 112 ~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
+++|++++|||++++++|+.+..|+..+.... ++.|+++ |||+|+ ..+.++.. +++...+. .++++|+++
T Consensus 85 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sak~ 161 (180)
T cd04127 85 RDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGI-PYFETSAAT 161 (180)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 99999999999999999999999999998743 5688877 999999 34444422 56666554 578888765
No 38
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.95 E-value=4.2e-27 Score=178.06 Aligned_cols=139 Identities=63% Similarity=0.998 Sum_probs=120.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|++|||||||+++|.++.+...+.+|++.++....+.+++..+.+.+||++|++.+...+..+++.++++++|||
T Consensus 8 kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D 87 (199)
T cd04110 8 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 87 (199)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEE
Confidence 99999999999999999999999988899999988888888888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 123 VTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
++++++|+.+..|+..+....+.+|++| |||+|+. .+.+... +++...+ ..+++++..+
T Consensus 88 ~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~ 151 (199)
T cd04110 88 VTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMG-ISLFETSAKE 151 (199)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEECCC
Confidence 9999999999999999988888888877 9999993 3344322 3444444 4577887554
No 39
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.95 E-value=3.8e-27 Score=171.90 Aligned_cols=140 Identities=35% Similarity=0.609 Sum_probs=120.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeC--CeEEEEEEEeCCCcccccccchhccccCCEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVN--GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIV 119 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vil 119 (188)
+||+++|++++|||||++++..+.+.+.+.+|++.++....+.+. +..+.+.+||++|++++...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 389999999999999999999999988899999988877777776 778999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 120 VYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 120 v~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|||++++++|+.+..|+..+.+..+++|+++ +||+|+ .++.+..+ +++...+. .++++++++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~ 147 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQL-PLFRTSVKD 147 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCC-eEEEEECCC
Confidence 9999999999999999999988888899888 999998 44444432 45555554 567887654
No 40
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.95 E-value=3.6e-27 Score=172.06 Aligned_cols=139 Identities=29% Similarity=0.438 Sum_probs=116.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++..+.+...+.+|.+. .....+.+++..+.+.+||++|++++...+..++++++++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 59999999999999999999999998888898873 44567778888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++.++|+.+..|+..+.+. .+++|+++ |||+|+ .++.+..+ +++...+ ..++++|+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 147 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWG-CPFYETSAKS 147 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcC-CeEEEecCCC
Confidence 999999999999999999874 35689887 999998 34444432 3444444 5678887654
No 41
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.95 E-value=4.5e-27 Score=171.93 Aligned_cols=140 Identities=25% Similarity=0.562 Sum_probs=120.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++.++.+.+.+.++++.++..+.+..++..+.+++||++|++.+..++..+++.++++++||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 39999999999999999999999999999999999998888888999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC------CCceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC------EVVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~------~~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++++.+..|+.++.+.. .+.|+++ +||+|+. ++.++.+ +++...+ ..++++|+.+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 151 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKG-FKYFETSACT 151 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcC-CeEEEEECCC
Confidence 9999999999999999998864 3578887 9999984 4443333 3455544 4578888765
No 42
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.95 E-value=4.7e-27 Score=173.63 Aligned_cols=139 Identities=33% Similarity=0.587 Sum_probs=117.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|+.|||||||++++..+.|.++|.||++.++..+.+.+++..+.+++||++|+++|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 89999999999999999999999999999999999888888889989999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh-CC-CceEEE-EEcCCC-CCccc--hh-h--hhhhcCCCCceEEeeccc
Q psy1417 123 VTSGETFANVKRWLHEIENN-CE-VVNRIL-GLRLGL-NQRSI--DE-V--NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~-~~-~~pilv-gnK~Dl-~~~~i--~~-~--~~~~~~~~~~~~e~~~~~ 182 (188)
++++++++.+..|+..+.+. .+ ..|+++ |||.|+ +.+.+ .+ + .++.+.+. .++++|+.+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~ 149 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQA-EYWSVSALS 149 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCC-eEEEEECCC
Confidence 99999999999999998664 33 467666 999998 33222 12 1 44554443 578887665
No 43
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.95 E-value=5.9e-27 Score=171.83 Aligned_cols=140 Identities=54% Similarity=0.922 Sum_probs=119.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++.++.+...+.+|.+.++....+.+++..+.+.+||++|++++...+..+++.+|++++||
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~ 82 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 82 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEE
Confidence 49999999999999999999999998888899998888888888988899999999999999999899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++|+.+..|+..+.+.. ++.|+++ |||+|+ .++.+..+ +++...+. .++++|..+
T Consensus 83 d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (166)
T cd01869 83 DVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGI-PFLETSAKN 148 (166)
T ss_pred ECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCC-eEEEEECCC
Confidence 9999999999999999998865 5688887 999998 34444322 45554444 578887654
No 44
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=6e-27 Score=171.71 Aligned_cols=141 Identities=40% Similarity=0.699 Sum_probs=121.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|++.+......+++.+|++++||
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~ 83 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAY 83 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEE
Confidence 49999999999999999999999998888899988888888888888889999999999999988899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccch---hhhhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSID---EVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~---~~~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++|+.+..|+..+.... +++|+++ +||+|+ ..+.+. ..+++...+...++|+|.++
T Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (165)
T cd01864 84 DITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKE 150 (165)
T ss_pred ECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCC
Confidence 9999999999999999998754 5688777 999998 333333 22666666677788988765
No 45
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.95 E-value=4.7e-27 Score=176.41 Aligned_cols=139 Identities=31% Similarity=0.494 Sum_probs=117.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|++|||||||+++|..+.+...+.||++.++. ..+..++..+.+.+||++|++.+...+..+++.++++++|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 8999999999999999999999999989999987764 456678888999999999999999999999999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCCC-Ccc------------chh---hhhhhcCCCCceEEeeccc
Q psy1417 123 VTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGLN-QRS------------IDE---VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 123 ~~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl~-~~~------------i~~---~~~~~~~~~~~~~e~~~~~ 182 (188)
++++++|+.+. .|+..+....++.|+++ |||+|+. ++. +.. .+++...+...++|+|.++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 99999999996 69999998878899888 9999993 221 111 1445555556789998765
No 46
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.95 E-value=6.6e-27 Score=171.23 Aligned_cols=140 Identities=29% Similarity=0.487 Sum_probs=117.2
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
++||+++|++|||||||++++..+.+.+.+.+|++..+. ..+.+++..+.+.+||++|++++..++..+++.+|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 359999999999999999999999998888899886654 6677888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
||+++..+|+.+.+|+..+.+. .+++|+++ |||+|+. ++.++.. +++...+ ..++++++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 147 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWG-CAFLETSAKA 147 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhC-CEEEEeeCCC
Confidence 9999999999999999999863 36789888 9999993 4444432 4554444 4577887654
No 47
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=1.2e-26 Score=173.83 Aligned_cols=140 Identities=43% Similarity=0.752 Sum_probs=119.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|+.|||||||+++|.++.+...+.+|++.++....+.+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 38999999999999999999999998888999998888888888888899999999999999989999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++|+.+..|+.++.+.. ++.|+++ |||+|+. .+.++.. .++...+. .++|+++.+
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~~ 146 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNI-PFFETSAKQ 146 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 9999999999999999998854 4578777 9999984 4444432 45554444 688888654
No 48
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.95 E-value=1.4e-26 Score=170.80 Aligned_cols=140 Identities=39% Similarity=0.654 Sum_probs=119.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccc-ccchhccccCCEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR-TITSTYYRGTHGVIVV 120 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-~~~~~~~~~~~~vilv 120 (188)
+||+++|++|||||||++++..+.+...+.++++.++....+.+++..+.+.+||++|++++. .++..+++++|++++|
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v 82 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFV 82 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEE
Confidence 499999999999999999999999988889999988888888899999999999999999886 5788889999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
||++++++|+.+..|+..+.+.. .++|+++ |||+|+ ..+.+..+ +++...+ ..++|+|.++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~ 150 (170)
T cd04115 83 YDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHS-MPLFETSAKD 150 (170)
T ss_pred EECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcC-CcEEEEeccC
Confidence 99999999999999999998754 5689888 999998 34444422 4554443 5688888765
No 49
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.95 E-value=8.7e-27 Score=174.25 Aligned_cols=140 Identities=24% Similarity=0.499 Sum_probs=117.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeC-CeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVN-GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
+||+++|++|||||||+++|.++.+...+.++++.++.. .+... +..+.+.+||++|++++...++.+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 389999999999999999999999998999999877654 34454 7788999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCCCC-c----cch---hhhhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGLNQ-R----SID---EVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl~~-~----~i~---~~~~~~~~~~~~~~e~~~~~ 182 (188)
||++++++|+.+. .|+..+....+++|+++ |||+|+.. . .+. ..+++...+...++++|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 151 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKT 151 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCC
Confidence 9999999999996 59998887777889888 99999832 2 222 22566667776789998665
No 50
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.95 E-value=1.6e-26 Score=168.59 Aligned_cols=140 Identities=39% Similarity=0.660 Sum_probs=120.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++.+......+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 49999999999999999999999998888999998888888888888899999999999999988899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++++.+..|+..+.... +++|++| +||.|+ ..+.+... +++...+ ..++++++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 146 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENG-LLFLETSALT 146 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcC-CEEEEEECCC
Confidence 9999999999999999987643 6789888 999998 34444322 4555555 6788888765
No 51
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.95 E-value=1.3e-26 Score=169.43 Aligned_cols=139 Identities=32% Similarity=0.472 Sum_probs=115.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++..+.+.+.+.+|++ ++....+..++..+.+.+||++|+++|..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 5999999999999999999999999888888886 455567778888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCC-CCccchh---hhhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGL-NQRSIDE---VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl-~~~~i~~---~~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++|+++..|+..+.+.. .++|+++ |||+|+ .++.++. ..++...+ ..++++++.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 147 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWG-CPFMETSAKS 147 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhC-CEEEEecCCC
Confidence 9999999999999999998743 5688887 999998 3444332 24444433 3567777654
No 52
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.95 E-value=1.8e-26 Score=176.57 Aligned_cols=140 Identities=30% Similarity=0.493 Sum_probs=118.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCC-eEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNG-EKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
+||+++|++|||||||+++|..+.+...+.+|++.++..+.+.+++ ..+.+.+||++|++.+...+..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 3999999999999999999999999999999999998888888765 578999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhC----CCceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANVKRWLHEIENNC----EVVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~~~----~~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
||++++++|+.+..|+..+.+.. .++|+++ |||+|+. .+.+..+ +++...+. .++++|.++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~~iSAkt 150 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGM-ESCLVSAKT 150 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEEECCC
Confidence 99999999999999999998854 2467766 9999994 4555433 45555553 577777654
No 53
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=1.8e-26 Score=170.37 Aligned_cols=142 Identities=19% Similarity=0.272 Sum_probs=119.3
Q ss_pred cccceeEEEEeCCCCCHHHHHHHHHhCCCC-CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCE
Q psy1417 38 HIFSQKSSFLQLVGVGKSSLLIRFSDNTFS-GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHG 116 (188)
Q Consensus 38 ~~~~~ki~vvG~~~~GKssLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 116 (188)
+.+ ||+++|++|||||||+++|.++.|. .+|.||++..+....+.+++..+.+.+||++|++.+..++..+++++|+
T Consensus 3 ~~~--kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~ 80 (169)
T cd01892 3 NVF--LCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDV 80 (169)
T ss_pred eEE--EEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCE
Confidence 456 9999999999999999999999998 8899999988877778888888899999999999999889999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC-CCccc---hhhhhhhcCCCCceEEeeccc
Q psy1417 117 VIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL-NQRSI---DEVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 117 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl-~~~~i---~~~~~~~~~~~~~~~e~~~~~ 182 (188)
+++|||++++++|+.+..|+..+... .++|+++ +||+|+ +++.+ +..+++...+...++++|+.+
T Consensus 81 ~llv~d~~~~~s~~~~~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (169)
T cd01892 81 ACLVYDSSDPKSFSYCAEVYKKYFML-GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKL 150 (169)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHhccC-CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEecc
Confidence 99999999999999999998876432 3688887 999999 33332 234666766666667877654
No 54
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.95 E-value=1.9e-26 Score=170.21 Aligned_cols=138 Identities=29% Similarity=0.550 Sum_probs=118.0
Q ss_pred EEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEeC
Q psy1417 44 SSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDV 123 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~ 123 (188)
|+|+|++|||||||++++..+.+...+.++++..+. ..+.+++..+.+.+||++|++.+..+++.+++.+|++++|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 589999999999999999999998888888876554 5667788889999999999999999999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCCCC-c------------cchhh---hhhhcCCCCceEEeeccc
Q psy1417 124 TSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGLNQ-R------------SIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 124 ~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl~~-~------------~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
++.++|+.+. .|+..+.+..+++|+++ |||+|+.. + .++.+ +++...+...++|+|+++
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 156 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALT 156 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCC
Confidence 9999999996 69999998888899888 99999832 1 12222 477777777899998765
No 55
>PTZ00369 Ras-like protein; Provisional
Probab=99.95 E-value=1.9e-26 Score=173.08 Aligned_cols=139 Identities=29% Similarity=0.433 Sum_probs=116.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++..+.+...+.+|++..+ .+.+.+++..+.+.+|||+|++++..++..+++.++++++||
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~ 84 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVY 84 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEE
Confidence 4999999999999999999999999888999988666 467778888999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCC-CCccchh---hhhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGL-NQRSIDE---VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl-~~~~i~~---~~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++|+.+..|+..+.+.. +++|+++ |||+|+ .++.++. .+++...+. .++++|.++
T Consensus 85 D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~-~~~e~Sak~ 151 (189)
T PTZ00369 85 SITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGI-PFLETSAKQ 151 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCC-EEEEeeCCC
Confidence 9999999999999999988753 4688887 999998 3444443 244444333 568887655
No 56
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=2.6e-26 Score=175.26 Aligned_cols=140 Identities=39% Similarity=0.642 Sum_probs=118.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEe-CCeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDV-NGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
+||+++|++|||||||+++|.++.+...+.+|++.++..+.+.+ ++..+.+.+||++|++++...+..+++++|++++|
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv 82 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLV 82 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEE
Confidence 49999999999999999999999998888899998888787776 46678999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCC-CCccchh---hhhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGL-NQRSIDE---VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl-~~~~i~~---~~~~~~~~~~~~~e~~~~~ 182 (188)
||++++++|+++..|+.++.+.. ..+|++| |||+|+ ..+.+.. .+++...+ ..++|+|+++
T Consensus 83 ~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sak~ 150 (211)
T cd04111 83 FDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLG-MKYIETSART 150 (211)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhC-CEEEEEeCCC
Confidence 99999999999999999998754 3467666 999999 3344432 25666655 5688888765
No 57
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.95 E-value=4e-26 Score=167.14 Aligned_cols=140 Identities=41% Similarity=0.746 Sum_probs=119.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|+++||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...++.+++.++++++||
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 83 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 83 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEE
Confidence 39999999999999999999999988888899998888888888988899999999999999989999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCC-CceEEE-EEcCCCC-Cccchh---hhhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNCE-VVNRIL-GLRLGLN-QRSIDE---VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~~-~~pilv-gnK~Dl~-~~~i~~---~~~~~~~~~~~~~e~~~~~ 182 (188)
|+++.++++.+.+|+..+.+..+ ++|+++ |||+|+. .+.+.. .+++...+ ..++++|+.+
T Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 149 (165)
T cd01868 84 DITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNG-LSFIETSALD 149 (165)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcC-CEEEEEECCC
Confidence 99999999999999999988665 489887 9999983 344332 24554433 4578888765
No 58
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=2.8e-26 Score=182.50 Aligned_cols=134 Identities=23% Similarity=0.385 Sum_probs=113.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCC-------------eEEEEEEEeCCCcccccccch
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNG-------------EKVKLQIWDTAGQERFRTITS 108 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-------------~~~~l~l~D~~g~~~~~~~~~ 108 (188)
+||+|+|+.|||||||+++|..+.|...+.+|+|.++..+.+.+++ ..+.+.|||++|+++|..++.
T Consensus 22 iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~ 101 (334)
T PLN00023 22 VRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRS 101 (334)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhH
Confidence 4999999999999999999999999988999999988777777642 568899999999999999999
Q ss_pred hccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhC-------------CCceEEE-EEcCCCC-Cc---cc-----h-hh
Q psy1417 109 TYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-------------EVVNRIL-GLRLGLN-QR---SI-----D-EV 164 (188)
Q Consensus 109 ~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~-------------~~~pilv-gnK~Dl~-~~---~i-----~-~~ 164 (188)
.++++++++|+|||++++++|+++..|+.++.+.. .++|++| |||+||. ++ .+ + ..
T Consensus 102 ~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~ 181 (334)
T PLN00023 102 LFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAAR 181 (334)
T ss_pred HhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHHHH
Confidence 99999999999999999999999999999998753 2478777 9999993 21 22 1 22
Q ss_pred hhhhcCCCCce
Q psy1417 165 NLCHRGSVDGS 175 (188)
Q Consensus 165 ~~~~~~~~~~~ 175 (188)
++|++.++..+
T Consensus 182 ~~A~~~g~l~~ 192 (334)
T PLN00023 182 QWVEKQGLLPS 192 (334)
T ss_pred HHHHHcCCCcc
Confidence 67777766543
No 59
>PLN03110 Rab GTPase; Provisional
Probab=99.94 E-value=5.2e-26 Score=174.18 Aligned_cols=143 Identities=43% Similarity=0.737 Sum_probs=121.1
Q ss_pred CcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCE
Q psy1417 37 THIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHG 116 (188)
Q Consensus 37 ~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 116 (188)
.+.+ ||+++|+.|||||||+++|.++.+..++.+|++.++....+.+++..+.+.+||++|++++...+..+++.+++
T Consensus 10 ~~~~--Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 10 DYLF--KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred Ccee--EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 3445 99999999999999999999999888889999999988899999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 117 VIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 117 vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
+++|||++++++|+.+..|+..+.... .++|+++ |||+|+ ..+.+..+ .++... ...+++++.++
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~-~~~~~e~SA~~ 158 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKE-GLSFLETSALE 158 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHc-CCEEEEEeCCC
Confidence 999999999999999999999998865 4688877 999998 44444432 344333 34577777554
No 60
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.94 E-value=6.4e-26 Score=167.70 Aligned_cols=140 Identities=25% Similarity=0.443 Sum_probs=117.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+|++++|++|||||||++++..+.+..++.+|.. +.....+.+++..+.+.+||++|++++...+..+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 4999999999999999999999999999988875 444456778888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCCCC-------------ccchh---hhhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGLNQ-------------RSIDE---VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl~~-------------~~i~~---~~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++|+.+. .|+..+.+..++.|+++ |||+|+.. +.+.. .+++...+...++|+|.++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999985 69999887667789887 99999832 23332 2566666777889998655
No 61
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.94 E-value=5.7e-26 Score=165.15 Aligned_cols=139 Identities=27% Similarity=0.462 Sum_probs=115.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||++|++++..++..++++++++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 5999999999999999999999999888889887555 456678888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCCCCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGLNQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++..+|+.+..|+..+.+.. .+.|++| |||+|+.++.+... +++...+. .++++|.++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 146 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGI-PYIETSAKT 146 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCC-eEEEecCCC
Confidence 9999999999999999988753 4678877 99999955444322 34444333 567777654
No 62
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=4.6e-26 Score=171.90 Aligned_cols=138 Identities=25% Similarity=0.386 Sum_probs=108.7
Q ss_pred eeEEEEeCCCCCHHHHHH-HHHhC-----CCCCCccceeee-e-eEEE-------EEEeCCeEEEEEEEeCCCccccccc
Q psy1417 42 QKSSFLQLVGVGKSSLLI-RFSDN-----TFSGSYITTIGV-D-FKIR-------TIDVNGEKVKLQIWDTAGQERFRTI 106 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~-~l~~~-----~~~~~~~~t~~~-~-~~~~-------~~~~~~~~~~l~l~D~~g~~~~~~~ 106 (188)
+||+++|+.|||||||+. ++.++ .+...+.||++. + +... ...+++..+.+.+|||+|++.. .
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--~ 80 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--D 80 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--h
Confidence 499999999999999996 55543 355678899863 3 3222 1256888999999999998753 4
Q ss_pred chhccccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCCCC--------------------ccchhh
Q psy1417 107 TSTYYRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGLNQ--------------------RSIDEV 164 (188)
Q Consensus 107 ~~~~~~~~~~vilv~d~~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl~~--------------------~~i~~~ 164 (188)
...+++++|++++|||+++++||+.+. .|+..+.+..+++|+++ |||+|+.+ +.++.+
T Consensus 81 ~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 160 (195)
T cd01873 81 RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPE 160 (195)
T ss_pred hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHH
Confidence 566899999999999999999999997 59999988777888877 99999842 444433
Q ss_pred ---hhhhcCCCCceEEeeccc
Q psy1417 165 ---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 165 ---~~~~~~~~~~~~e~~~~~ 182 (188)
+++.+.++ .++|+|.++
T Consensus 161 e~~~~a~~~~~-~~~E~SAkt 180 (195)
T cd01873 161 TGRAVAKELGI-PYYETSVVT 180 (195)
T ss_pred HHHHHHHHhCC-EEEEcCCCC
Confidence 67777776 899998775
No 63
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.94 E-value=8e-26 Score=166.43 Aligned_cols=140 Identities=38% Similarity=0.656 Sum_probs=118.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++......+++.+|++++||
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~ 84 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 84 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 49999999999999999999999988888899998888888888988899999999999999988889999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh-CCCceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENN-CEVVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~-~~~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++++.+..|+..+.+. .+++|++| |||.|+. ++.+..+ .++...+ ..++|+++.+
T Consensus 85 d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~ 150 (168)
T cd01866 85 DITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHG-LIFMETSAKT 150 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcC-CEEEEEeCCC
Confidence 999999999999999999875 46788887 9999984 4444332 3444444 3578877553
No 64
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=7.2e-26 Score=170.19 Aligned_cols=140 Identities=39% Similarity=0.734 Sum_probs=117.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCC-CccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSG-SYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
+||+++|++|||||||++++..+.+.. .+.+|++.++....+.+++..+.+.+||++|++++...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 499999999999999999999988864 6788888888777788899999999999999999988888899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhCC-CceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANVKRWLHEIENNCE-VVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~~~~-~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
||+++.++|+++..|+..+.+..+ ++|+++ |||+|+ ..+.+... +++...+ ..++|++..+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~-~~~~e~Sa~~ 147 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYG-VPFMETSAKT 147 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcC-CeEEEEeCCC
Confidence 999999999999999999998664 689887 999999 34444322 4444433 3578877654
No 65
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.94 E-value=4.3e-26 Score=171.26 Aligned_cols=138 Identities=29% Similarity=0.456 Sum_probs=114.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|++|||||||+++|..+.|...+.+|++..+. ..+.+++..+.+.+||++|++++...+..+++++|++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 6899999999999999999999998888899886554 456678888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhC----CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 123 VTSGETFANVKRWLHEIENNC----EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~~----~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
+++.++|+.+..|+..+.+.. +++|+++ |||+|+ .++.+... +++...+. .++++|.++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SAk~ 147 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGC-EFIEASAKT 147 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCC-EEEEecCCC
Confidence 999999999999999887643 4688877 999998 44444433 34444443 578887665
No 66
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.94 E-value=1.1e-25 Score=164.19 Aligned_cols=140 Identities=47% Similarity=0.789 Sum_probs=119.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 39999999999999999999999888888899998888888888888899999999999999989999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCCCC-ccchh---hhhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGLNQ-RSIDE---VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl~~-~~i~~---~~~~~~~~~~~~~e~~~~~ 182 (188)
|+++.++++.+..|+..+..+. +++|+++ +||+|+.. +.+.. .+++...+. .++|+++.+
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~ 146 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGL-PFFETSAKT 146 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 9999999999999999998865 6789888 99999843 33332 245555554 478887654
No 67
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.94 E-value=9.6e-26 Score=165.48 Aligned_cols=139 Identities=27% Similarity=0.359 Sum_probs=114.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++.++++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 4999999999999999999999999888889887555 355566778899999999999999988888999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC----CCceEEE-EEcCCCCC-ccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC----EVVNRIL-GLRLGLNQ-RSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~----~~~pilv-gnK~Dl~~-~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++.++|+.+..|+..+.+.. +++|+++ |||+|+.+ +.+... ..+...+ ..++|+|.++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~SA~~ 149 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWN-CAFMETSAKT 149 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhC-CcEEEeecCC
Confidence 9999999999999988887632 5688887 99999943 444432 3444433 3678888665
No 68
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.94 E-value=9.1e-26 Score=164.93 Aligned_cols=134 Identities=21% Similarity=0.293 Sum_probs=109.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|+.|||||||+.+++.+.|.+.+.|+. ..+ ...+.+++..+.+.+||++|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 389999999999999999999998887776653 344 36788899889999999999865 24678899999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCCC---Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGLN---QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl~---~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++++||+++..|++++.+.. +++|+++ |||.|+. .+.+++. +++.+.+...++|+|.++
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 143 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATY 143 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCC
Confidence 9999999999999999998865 5688887 9999983 4555544 456555556889998765
No 69
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.94 E-value=1.1e-25 Score=164.58 Aligned_cols=140 Identities=24% Similarity=0.535 Sum_probs=115.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC--CCCCCccceeeeeeEEEEEEeC-CeEEEEEEEeCCCcccccccchhccccCCEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDN--TFSGSYITTIGVDFKIRTIDVN-GEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 118 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~--~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vi 118 (188)
+||+++|++|||||||++++..+ .+..++.+|.|.++....+.++ +..+.+.+||++|++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 38999999999999999999865 6888899999988877777665 56799999999999999888899999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 119 VVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 119 lv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
+|||++++++++.+..|+..+....+++|+++ |||+|+ +++.+... .+....+ ..+++++.++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 148 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQ-LKFFKTSALR 148 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcC-CeEEEEeCCC
Confidence 99999999999999999999988767788777 999999 44444432 3333333 3477887654
No 70
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.94 E-value=1.5e-25 Score=163.59 Aligned_cols=141 Identities=37% Similarity=0.624 Sum_probs=120.9
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
++||+++|+++||||||+++++++.+...+.++.+..+....+.+++..+.+.+||++|++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 35999999999999999999999998887889999888888889999999999999999999988888899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
||++++++++.+..|+..+.... +.+|+++ +||+|+. .+.++.. +++...+ ..++++++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 147 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENG-LLFFETSAKT 147 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcC-CEEEEEECCC
Confidence 99999999999999999998865 6688887 9999984 4433332 4555555 4578888765
No 71
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.94 E-value=5e-26 Score=177.42 Aligned_cols=140 Identities=21% Similarity=0.326 Sum_probs=115.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|+.+.|...+.+|++ ++..+.+.+++..+.+.+||++|++.|..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999999988999987 566677888999999999999999999888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh----------CCCceEEE-EEcCCCC-Cccchhhhhhhc---CCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENN----------CEVVNRIL-GLRLGLN-QRSIDEVNLCHR---GSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~----------~~~~pilv-gnK~Dl~-~~~i~~~~~~~~---~~~~~~~e~~~~~ 182 (188)
|+++.+||+++..|+.++... ..++|++| |||+|+. .+.+...+.... .....++++|.++
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAkt 155 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKK 155 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCC
Confidence 999999999999999998753 24688877 9999994 355554443332 2234578887554
No 72
>KOG0393|consensus
Probab=99.94 E-value=4.8e-27 Score=174.30 Aligned_cols=141 Identities=30% Similarity=0.544 Sum_probs=124.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeC-CeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVN-GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
+|+++||+.++|||+|+..+..+.|+.+|.||+-.+| ...+.++ ++.+.+.+|||.|++.|...++..+.++|++++|
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~c 83 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLC 83 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEE
Confidence 4999999999999999999999999999999998555 5777885 9999999999999999999998999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCCCCc-------------cch---hhhhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGLNQR-------------SID---EVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl~~~-------------~i~---~~~~~~~~~~~~~~e~~~~~ 182 (188)
|++.+++||+++. +|++++..++|++|+++ |+|.||... .++ ..+++++.++..++||+..+
T Consensus 84 fsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~t 163 (198)
T KOG0393|consen 84 FSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALT 163 (198)
T ss_pred EEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhh
Confidence 9999999999975 79999999999999988 999999421 122 12788888999999998765
Q ss_pred c
Q psy1417 183 Y 183 (188)
Q Consensus 183 ~ 183 (188)
.
T Consensus 164 q 164 (198)
T KOG0393|consen 164 Q 164 (198)
T ss_pred h
Confidence 3
No 73
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.94 E-value=1.1e-25 Score=170.31 Aligned_cols=141 Identities=21% Similarity=0.289 Sum_probs=111.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccccc--------chhcccc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTI--------TSTYYRG 113 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~--------~~~~~~~ 113 (188)
+||+|+|++|||||||++++..+.|...+.||.+.++....+.+++..+.+.+|||+|...+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 49999999999999999999999999889999887766667778888899999999997654211 2345789
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhh----CCCceEEE-EEcCCC-CCccchhhh---hhhcCCCCceEEeeccc
Q psy1417 114 THGVIVVYDVTSGETFANVKRWLHEIENN----CEVVNRIL-GLRLGL-NQRSIDEVN---LCHRGSVDGSVESTSVD 182 (188)
Q Consensus 114 ~~~vilv~d~~~~~s~~~~~~~~~~i~~~----~~~~pilv-gnK~Dl-~~~~i~~~~---~~~~~~~~~~~e~~~~~ 182 (188)
+|++++|||+++++||+.+..|+..+.+. .+++|++| |||+|+ .++.++.++ ++++.....++++|.++
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~ 158 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKY 158 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCC
Confidence 99999999999999999999999988875 35689887 999999 444444432 33333334678887654
No 74
>KOG0088|consensus
Probab=99.94 E-value=2.1e-27 Score=168.06 Aligned_cols=144 Identities=31% Similarity=0.603 Sum_probs=122.3
Q ss_pred ccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEE
Q psy1417 39 IFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 118 (188)
Q Consensus 39 ~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vi 118 (188)
-+++|++++|..=||||||+-|+..++|..+..+|+-..|..+.+++++....+.+|||.|+++|-.+-+.||++.++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 34459999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCC-ceEEE-EEcCCC-CCccchh--hhhhhcCCCCceEEeeccc
Q psy1417 119 VVYDVTSGETFANVKRWLHEIENNCEV-VNRIL-GLRLGL-NQRSIDE--VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 119 lv~d~~~~~s~~~~~~~~~~i~~~~~~-~pilv-gnK~Dl-~~~~i~~--~~~~~~~~~~~~~e~~~~~ 182 (188)
+|||+++++||+.++.|..++++...+ +-++| |||+|| .+|.++. .+..++--...++|++.++
T Consensus 91 LVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~ 159 (218)
T KOG0088|consen 91 LVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKD 159 (218)
T ss_pred EEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheeccccc
Confidence 999999999999999999999996655 44445 999999 4565553 3333433445566665544
No 75
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.94 E-value=2.2e-25 Score=167.47 Aligned_cols=140 Identities=34% Similarity=0.549 Sum_probs=116.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCC-CccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSG-SYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
+||+++|++|||||||+++|..+.+.. .+.+|++..+..+.+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 389999999999999999999998875 6889999888888888999999999999999999998888899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC-----ccchhh---hhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ-----RSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~-----~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
||+++..+|+.+..|+..+....++.|+++ |||+|+.+ +.+... +++...+ ..++++|.++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 150 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-AQHFETSSKT 150 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcC-CeEEEEeCCC
Confidence 999999999999999999988777789877 99999832 222222 3343333 3467777554
No 76
>PLN03108 Rab family protein; Provisional
Probab=99.94 E-value=2.5e-25 Score=169.71 Aligned_cols=140 Identities=37% Similarity=0.661 Sum_probs=119.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|..+.+...+.+|++.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~ 86 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEE
Confidence 39999999999999999999999998888999999888888889998999999999999999988889999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCCC-Cccchh---hhhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGLN-QRSIDE---VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl~-~~~i~~---~~~~~~~~~~~~~e~~~~~ 182 (188)
|+++.++|+.+..|+..+.+.. +++|+++ +||+|+. .+.++. ++++...+. .++|++.++
T Consensus 87 D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~ 152 (210)
T PLN03108 87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKT 152 (210)
T ss_pred ECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999999999887654 5688887 9999994 344442 255655554 578887654
No 77
>KOG0091|consensus
Probab=99.94 E-value=7.9e-27 Score=165.84 Aligned_cols=140 Identities=39% Similarity=0.633 Sum_probs=121.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEe-CCeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDV-NGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
++++++|+.-||||+|++.+..++|.+-.+||+|.++..+.+.+ .|..+++++|||.|+++|+.+...|+++.-++++|
T Consensus 9 frlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllv 88 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLV 88 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEE
Confidence 49999999999999999999999999999999999998777766 57889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhC--CCceE-EE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANVKRWLHEIENNC--EVVNR-IL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~~~--~~~pi-lv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
||+++++||+.++.|+++...+. |..+| ++ |+|+|| ++|+++.+ ++++.+++ .++|+|.++
T Consensus 89 yditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM-~FVETSak~ 157 (213)
T KOG0091|consen 89 YDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGM-AFVETSAKN 157 (213)
T ss_pred EeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCc-eEEEecccC
Confidence 99999999999999999988754 55554 34 999999 67877744 56666554 467877654
No 78
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.94 E-value=3.1e-25 Score=161.59 Aligned_cols=141 Identities=33% Similarity=0.609 Sum_probs=118.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|+++||||||++++.+.++...+.++.+.++....+.+++..+.+.+||++|++++......+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 38999999999999999999999988888899998888888888888889999999999999988899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCC-CceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeecccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNCE-VVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVDY 183 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~~-~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~~ 183 (188)
|++++++|+.+..|+..+....+ +.|+++ +||+|+ ..+.+..+ ..+...+ ..+++++..+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 147 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELN-AMFIETSAKAG 147 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhC-CEEEEEeCCCC
Confidence 99999999999999999877553 688888 999999 54443432 3333333 55777776553
No 79
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.94 E-value=2.3e-25 Score=162.84 Aligned_cols=139 Identities=30% Similarity=0.487 Sum_probs=114.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++.++.+...+.+|.+..+ ...+..++..+.+.+||++|++++..++..+++.++++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 3999999999999999999999998888888877444 466677888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++|+.+..|...+.+.. .+.|+++ |||+|+. ++.++.+ +++...+ ..++++|.++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 146 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWG-CPFLETSAKE 146 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcC-CEEEEeecCC
Confidence 9999999999999998887743 4578877 9999994 3444432 3444444 5678887655
No 80
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.94 E-value=5.2e-25 Score=161.95 Aligned_cols=141 Identities=33% Similarity=0.610 Sum_probs=119.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++.++.+...+.++++.++....+.+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 39999999999999999999999988888899988888888888998999999999999999988999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCC-----CceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNCE-----VVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~~-----~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++++.+..|...+..... ++|+++ +||+|+. .+.+..+ .++...+...++++|+.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 151 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKE 151 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCC
Confidence 99999999999999988776543 688887 9999994 3333222 455666656788887644
No 81
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.94 E-value=3.1e-25 Score=170.06 Aligned_cols=111 Identities=31% Similarity=0.539 Sum_probs=96.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|+++||||||+++|..+.|.. +.+|++.++....+ ..+.+.+||++|++.|..++..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 389999999999999999999999875 67888877654443 4688999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh-CCCceEEE-EEcCCCC
Q psy1417 122 DVTSGETFANVKRWLHEIENN-CEVVNRIL-GLRLGLN 157 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~-~~~~pilv-gnK~Dl~ 157 (188)
|++++++|+++..|+..+.+. .+++|++| |||+|+.
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~ 113 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLT 113 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 999999999999888877764 35688777 9999983
No 82
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.94 E-value=5.4e-25 Score=162.48 Aligned_cols=140 Identities=24% Similarity=0.451 Sum_probs=116.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|+|||||++++..+.+.+.+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 3999999999999999999999999888888877444 456778888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCCCCc-------------cchh---hhhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGLNQR-------------SIDE---VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl~~~-------------~i~~---~~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++|+.+. .|++.+....++.|+++ |||+|+... .++. .+++...+...++|+|.++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999996 69998887777889887 999998322 2221 2455666666788987654
No 83
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.94 E-value=5e-25 Score=160.84 Aligned_cols=139 Identities=29% Similarity=0.466 Sum_probs=114.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++++++.+...+.++.+..+ .....+++..+.+.+||++|++++..++..+++.+|++++||
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 4999999999999999999999988888888887544 455678888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++.++|+.+..|+..+.+. ..++|++| +||+|+. ++.+..+ +++...+. .++++|..+
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKI-PYIETSAKD 148 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCC-cEEEeeCCC
Confidence 999999999999999998874 35688887 9999994 3333322 44444443 678887554
No 84
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.93 E-value=7.6e-25 Score=159.63 Aligned_cols=140 Identities=46% Similarity=0.809 Sum_probs=116.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 49999999999999999999998887778899998888787888888899999999999999888889999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCCCCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGLNQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|.++.++|+.+..|+..+.+.. ++.|+++ |||+|+..+.+..+ +++...+ ..++++|..+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 146 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHN-MLFIETSAKT 146 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcC-CEEEEEecCC
Confidence 9999999999999999998864 5688777 99999953333322 4454443 3467776554
No 85
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.93 E-value=3.7e-25 Score=162.19 Aligned_cols=138 Identities=28% Similarity=0.421 Sum_probs=111.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccc-cccchhccccCCEEEEEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERF-RTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~-~~~~~~~~~~~~~vilv~ 121 (188)
||+++|++|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+ ......+++.+|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999999888888888876444 456678888899999999998853 445677899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC---CCceEEE-EEcCCC-CCccchh---hhhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC---EVVNRIL-GLRLGL-NQRSIDE---VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~---~~~pilv-gnK~Dl-~~~~i~~---~~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++|+.+..|+..+.... .++|+++ |||+|+ ..+.++. .+++...+ ..++++|+++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~ 147 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELG-CLFFEVSAAE 147 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcC-CEEEEeCCCC
Confidence 9999999999999999888753 4788877 999998 4444443 24555555 4678888764
No 86
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.93 E-value=8.1e-25 Score=161.66 Aligned_cols=140 Identities=26% Similarity=0.522 Sum_probs=115.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
.||+++|++|||||||+++|.++.+.+.+.+|++..+. ..+.+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 49999999999999999999999998889999886654 45677888899999999999999888888899999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCCCCc-------------cch---hhhhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGLNQR-------------SID---EVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl~~~-------------~i~---~~~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++|+.+. .|+..+.+..++.|+++ |||+|+... .+. ..+++...+...++++|.++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999986 59998888777889888 999998321 111 12444455556788888654
No 87
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.93 E-value=1.3e-24 Score=159.99 Aligned_cols=140 Identities=27% Similarity=0.446 Sum_probs=116.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++.++.+...+.++++..+ .+.+.+++..+.+.+||++|+++|..+++.+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 5999999999999999999999999888889988554 567778888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++++.+..|...+.+. ..+.|+++ |||.|+ ..+.++.+ .++...+...++++|..+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 148 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARK 148 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCC
Confidence 999999999999999998863 35689877 999998 34444332 333444435578887654
No 88
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.93 E-value=2.4e-25 Score=163.55 Aligned_cols=116 Identities=22% Similarity=0.366 Sum_probs=100.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
.|+++|++|||||||+++|.++.+...+.||++... ..+++..+.+.+||++|++++...+..+++++|++++|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 379999999999999999999888888899988543 2334456889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC-Cccch
Q psy1417 123 VTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN-QRSID 162 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~-~~~i~ 162 (188)
.++..++..++.|+..+.+..+++|+++ |||+|+. .+.++
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~ 118 (164)
T cd04162 77 SADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQ 118 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHH
Confidence 9999999999999999877667899888 9999983 44443
No 89
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.93 E-value=4.6e-24 Score=163.18 Aligned_cols=140 Identities=27% Similarity=0.483 Sum_probs=120.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+|++++|++|||||||+++++.+.+...+.+|++.++....+..+++.+.+.+||++|++++...+..++..++++++||
T Consensus 10 ~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 89 (215)
T PTZ00132 10 FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMF 89 (215)
T ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEE
Confidence 49999999999999999999999998999999999998888888889999999999999999888888999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCccchhh--hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSIDEV--NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~~~--~~~~~~~~~~~~e~~~~~ 182 (188)
|+++..+|..+..|+..+.+..+++|+++ |||+|+.++.+... +++...+ ..++++|+++
T Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~e~Sa~~ 152 (215)
T PTZ00132 90 DVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKN-LQYYDISAKS 152 (215)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcC-CEEEEEeCCC
Confidence 99999999999999999998778899887 99999854433322 3444433 3577887663
No 90
>KOG0081|consensus
Probab=99.93 E-value=9.8e-27 Score=164.73 Aligned_cols=142 Identities=35% Similarity=0.729 Sum_probs=122.4
Q ss_pred CcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeC---------CeEEEEEEEeCCCcccccccc
Q psy1417 37 THIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVN---------GEKVKLQIWDTAGQERFRTIT 107 (188)
Q Consensus 37 ~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~---------~~~~~l~l~D~~g~~~~~~~~ 107 (188)
++.+ |++.+|++||||||++.++.+++|..+..+|+|.++..+.+-++ +..+.+++|||.|+++|+.+.
T Consensus 7 dyli--kfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT 84 (219)
T KOG0081|consen 7 DYLI--KFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT 84 (219)
T ss_pred HHHH--HHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence 3456 99999999999999999999999999999999999998887664 356889999999999999999
Q ss_pred hhccccCCEEEEEEeCCChhhHHHHHHHHHHHHh--hCCCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeec
Q psy1417 108 STYYRGTHGVIVVYDVTSGETFANVKRWLHEIEN--NCEVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTS 180 (188)
Q Consensus 108 ~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~--~~~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~ 180 (188)
..+++++=+++++||+++++||-++..|+.++.. ++++.-|++ |||+|+ ++|++++. .+|++.++ .+||++.
T Consensus 85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kygl-PYfETSA 163 (219)
T KOG0081|consen 85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGL-PYFETSA 163 (219)
T ss_pred HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCC-Ceeeecc
Confidence 9999999999999999999999999999999987 557766777 999999 56777765 56666554 4677764
Q ss_pred c
Q psy1417 181 V 181 (188)
Q Consensus 181 ~ 181 (188)
.
T Consensus 164 ~ 164 (219)
T KOG0081|consen 164 C 164 (219)
T ss_pred c
Confidence 3
No 91
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.92 E-value=2.5e-24 Score=165.48 Aligned_cols=138 Identities=25% Similarity=0.265 Sum_probs=110.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCC-CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccc-cCCEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFS-GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYR-GTHGVIV 119 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~-~~~~vil 119 (188)
+||+++|++|||||||+++|..+.+. ..+.++.+.++..+.+.+++..+.+.+||++|++ ......+++ ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 49999999999999999999988886 7778887767777888888889999999999998 233445666 8999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 120 VYDVTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 120 v~d~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|||++++.+|+.+..|+..+.+.. .++|+++ |||+|+ ..+.+..+ +++...+ ..++++|..+
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~SA~~ 147 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFD-CKFIETSAGL 147 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcC-CeEEEecCCC
Confidence 999999999999999999998754 5688887 999998 45555433 3444434 3577877543
No 92
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.92 E-value=5.2e-24 Score=154.79 Aligned_cols=140 Identities=31% Similarity=0.622 Sum_probs=114.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|+|||||++++..+.+...+.++.+..+....+...+..+.+.+||++|++.+...++.+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 49999999999999999999999887777777777777777777788889999999999999888998999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCC-CceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNCE-VVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~~-~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++.++++.+..|+.++....+ ++|+++ +||+|+. .+.+... +.....+ ...+++++.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~ 146 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVG-AKHFETSAKT 146 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcC-CEEEEEeCCC
Confidence 99999999999999999988554 688888 9999983 4444432 3333333 3357777654
No 93
>KOG0395|consensus
Probab=99.92 E-value=1.2e-24 Score=163.95 Aligned_cols=139 Identities=32% Similarity=0.461 Sum_probs=121.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+|++++|.+|||||+|+.+++.+.|.++|.||++ +.+.+.+.++++.+.+.++||+|++.+..++..+++.++++++||
T Consensus 4 ~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVy 82 (196)
T KOG0395|consen 4 YKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVY 82 (196)
T ss_pred eEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEE
Confidence 5999999999999999999999999999999999 555688889999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHh--hCCCceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIEN--NCEVVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~--~~~~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
+++++.||+.+..++..+.+ ....+|+++ |||+|+. .|.++.+ .++...++. ++|+|.+.
T Consensus 83 sitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~-f~E~Sak~ 149 (196)
T KOG0395|consen 83 SITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCA-FIETSAKL 149 (196)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCc-EEEeeccC
Confidence 99999999999999999955 224579887 9999994 4777755 355555555 88988654
No 94
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=9.3e-24 Score=155.04 Aligned_cols=140 Identities=41% Similarity=0.714 Sum_probs=115.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++..+.+...+.++++.++....+.+++..+.+.+||++|++.+......+++.+|++++||
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 87 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTY 87 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence 49999999999999999999988888888899888888888888988899999999999999888888999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCC-CceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNCE-VVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~~-~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++..+++.+..|+..+..... .+|+++ +||+|+. .+.+... .+..... ..+++++..+
T Consensus 88 d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~-~~~~~~Sa~~ 153 (169)
T cd04114 88 DITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQD-MYYLETSAKE 153 (169)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcC-CeEEEeeCCC
Confidence 99999999999999999887553 578666 9999983 4444422 2333222 5567777654
No 95
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.92 E-value=2.5e-24 Score=158.71 Aligned_cols=111 Identities=26% Similarity=0.492 Sum_probs=94.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|+++||||||++++..+.+. .+.||++.++. .+.. ..+.+.+||++|++++...+..+++++|++++|||
T Consensus 11 kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D 85 (168)
T cd04149 11 RILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 85 (168)
T ss_pred EEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEe
Confidence 9999999999999999999877765 46788886654 2323 45889999999999999899999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCCC
Q psy1417 123 VTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~~ 158 (188)
+++..+|+++..|+.++.+. .+++|++| |||+|+..
T Consensus 86 ~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 86 SADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred CCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 99999999999888777653 36688887 99999954
No 96
>PLN03118 Rab family protein; Provisional
Probab=99.92 E-value=1.2e-23 Score=160.52 Aligned_cols=140 Identities=42% Similarity=0.688 Sum_probs=112.8
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
.+||+++|++|||||||+++|..+.+ ..+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|++++|
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv 92 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILV 92 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 34999999999999999999998876 46788988888878888888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHH-HHHHHHhhC--CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANVKR-WLHEIENNC--EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~~~-~~~~i~~~~--~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
||++++++|+.+.. |...+.... .+.|+++ |||+|+ ..+.++.+ +++...+ ..+++++.++
T Consensus 93 ~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~-~~~~e~SAk~ 161 (211)
T PLN03118 93 YDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHG-CLFLECSAKT 161 (211)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcC-CEEEEEeCCC
Confidence 99999999999976 766666533 3467666 999998 34444432 3444443 3578887654
No 97
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.92 E-value=3.1e-24 Score=160.12 Aligned_cols=125 Identities=19% Similarity=0.429 Sum_probs=101.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|+.+||||||++++..+.+. .+.||+|.++. .+.. ..+.+.+||++|++++..++..+++++|++|+|||
T Consensus 19 ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D 93 (181)
T PLN00223 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
T ss_pred EEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEe
Confidence 9999999999999999999887775 46788886653 3333 34789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHh--hCCCceEEE-EEcCCCCCccchhhhhhhcCCCC
Q psy1417 123 VTSGETFANVKRWLHEIEN--NCEVVNRIL-GLRLGLNQRSIDEVNLCHRGSVD 173 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~--~~~~~pilv-gnK~Dl~~~~i~~~~~~~~~~~~ 173 (188)
+++.++++.+..|+..+.. ..+++|++| |||+|++.. .+.+++....++.
T Consensus 94 ~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~l~l~ 146 (181)
T PLN00223 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-MNAAEITDKLGLH 146 (181)
T ss_pred CCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC-CCHHHHHHHhCcc
Confidence 9999999999888877754 335788888 999999543 3444555554544
No 98
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.92 E-value=4.9e-24 Score=158.16 Aligned_cols=111 Identities=22% Similarity=0.435 Sum_probs=94.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|++|||||||++++..+.+. .+.||++.++.. +.. ..+.+.+||++|++++...+..+++++|++++|||
T Consensus 15 ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D 89 (175)
T smart00177 15 RILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVD 89 (175)
T ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEE
Confidence 9999999999999999999877774 467888876643 333 34789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCCC
Q psy1417 123 VTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~~ 158 (188)
++++++++.+..|+..+.+. .+++|++| |||+|+.+
T Consensus 90 ~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 128 (175)
T smart00177 90 SNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD 128 (175)
T ss_pred CCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCccc
Confidence 99999999999988887653 35688877 99999943
No 99
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.92 E-value=1.1e-23 Score=157.87 Aligned_cols=140 Identities=27% Similarity=0.502 Sum_probs=115.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
.||+++|++|+|||||++++..+.+.+.+.+++...+. ..+.+++..+.+.+||++|++.+....+..++.++++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 59999999999999999999988888888888765554 45667888889999999999988877777889999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCCCC-----------ccch---hhhhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGLNQ-----------RSID---EVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl~~-----------~~i~---~~~~~~~~~~~~~~e~~~~~ 182 (188)
|+++.++|+.+. .|+..+.+..+++|+++ |||+|+.+ +.++ ..+++...+...++|+|.++
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 157 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALT 157 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCC
Confidence 999999999996 69999998888899888 99999832 1221 22456666667889998665
No 100
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.92 E-value=1.5e-23 Score=151.18 Aligned_cols=140 Identities=46% Similarity=0.809 Sum_probs=118.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|+++||||||++++.++.+...+.+|.+.++....+..++..+.+.+||++|+..+......+++++|++++||
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 38999999999999999999999988888899999998888888888899999999999999888899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++++.+..|+..+.... +..|++| +||+|+. ...+..+ +++... ...++++++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~ 146 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKEN-GLLFFETSAKT 146 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHc-CCeEEEEecCC
Confidence 9999999999999999999866 6788887 9999993 3333322 344432 45678877655
No 101
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.92 E-value=1.8e-23 Score=153.62 Aligned_cols=140 Identities=31% Similarity=0.564 Sum_probs=114.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.++.+...+.++....+ ......++..+.+.+||++|++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 3999999999999999999999998778888876444 455677888899999999999988888888889999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCC-CCcc-----------ch---hhhhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL-NQRS-----------ID---EVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl-~~~~-----------i~---~~~~~~~~~~~~~~e~~~~~ 182 (188)
|+++.++|..+. .|+..+....++.|+++ |||+|+ ..+. +. ..+++...+...++++|+.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALT 157 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCC
Confidence 999999998875 69988888777899887 999998 2221 11 12556666666888888655
No 102
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.92 E-value=8.6e-24 Score=154.48 Aligned_cols=112 Identities=21% Similarity=0.446 Sum_probs=94.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|+.+||||||++++..+.+. .+.||+|.++. .+.. ..+.+.+||++|++++...+..+++++|++++|||
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 8999999999999999999888876 47888886653 3333 35889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCCCc
Q psy1417 123 VTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLNQR 159 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~~~ 159 (188)
+++..+++.+.+|+..+.+. ..+.|++| +||+|+.+.
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 116 (159)
T cd04150 77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA 116 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC
Confidence 99999999999888777542 24578887 999999543
No 103
>KOG0097|consensus
Probab=99.91 E-value=2.6e-24 Score=149.95 Aligned_cols=143 Identities=39% Similarity=0.670 Sum_probs=124.1
Q ss_pred CcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCE
Q psy1417 37 THIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHG 116 (188)
Q Consensus 37 ~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 116 (188)
.++| |.+++|+-|+|||+|+.+|...+|..+..-|+|.++..+.+.+.|..+++++||+.|+++|+.....+++++.+
T Consensus 9 syif--kyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 9 SYIF--KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred hheE--EEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 3456 99999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHh-hCCCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 117 VIVVYDVTSGETFANVKRWLHEIEN-NCEVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 117 vilv~d~~~~~s~~~~~~~~~~i~~-~~~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
.++|||++.+.++..+..|+...+. -.|+..|++ |||.|+ .+|.++.+ ++++++ ..-+.|++.++
T Consensus 87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeen-gl~fle~sakt 157 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEEN-GLMFLEASAKT 157 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhc-CeEEEEecccc
Confidence 9999999999999999999999888 457877776 999999 56766644 344444 44566666443
No 104
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.91 E-value=2.2e-23 Score=155.66 Aligned_cols=111 Identities=23% Similarity=0.448 Sum_probs=93.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|+++||||||++++..+.+.. +.||++.++. .+.. ..+.+.+||++|++++...+..+++++|++|+|||
T Consensus 19 kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D 93 (182)
T PTZ00133 19 RILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVD 93 (182)
T ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 99999999999999999998887764 6788886654 3333 44889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCCC
Q psy1417 123 VTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~~ 158 (188)
+++.++++.+..|+..+.+. ..++|++| |||.|+.+
T Consensus 94 ~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 94 SNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred CCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 99999999998877777542 34578887 99999853
No 105
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.91 E-value=4.8e-23 Score=151.32 Aligned_cols=138 Identities=24% Similarity=0.319 Sum_probs=105.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|++|||||||++++..+.+...+.++.. ++ .....+++..+.+.+||++|++.+...+..+++.+|++++|||
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-EI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-ce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 899999999999999999999998776544432 22 2444566778899999999998887777777899999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCCCC-ccc--hhhh---hhhcC-CCCceEEeeccc
Q psy1417 123 VTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGLNQ-RSI--DEVN---LCHRG-SVDGSVESTSVD 182 (188)
Q Consensus 123 ~~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl~~-~~i--~~~~---~~~~~-~~~~~~e~~~~~ 182 (188)
++++++|+.+. .|+..+....+++|+++ |||+|+.+ +.. .+++ ..... ....++++|.++
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 148 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKT 148 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEecccc
Confidence 99999999985 68888887777889888 99999943 322 1121 12222 234677887654
No 106
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.91 E-value=7.4e-23 Score=149.10 Aligned_cols=139 Identities=29% Similarity=0.444 Sum_probs=114.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++..+.+...+.++.+..+ .+....++..+.+.+||++|++.+...+..+++.++++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 3999999999999999999999998888888877544 456678888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCCC-ccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLNQ-RSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~~-~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++.+|+.+..|+..+.+. ..++|+++ +||+|+.. +..... ..+...+ ..++++|+++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 146 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWG-VPYVETSAKT 146 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhC-CeEEEeeCCC
Confidence 999999999999999998885 35688877 99999843 333222 4444443 3577887654
No 107
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.90 E-value=3.3e-23 Score=152.73 Aligned_cols=111 Identities=23% Similarity=0.455 Sum_probs=94.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|+++||||||++++..+.+. .+.||++.++. .+.. ..+.+.+||++|+.++...+..+++.+|++++|||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 6899999999999999999988765 47888886664 2333 45789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCCC
Q psy1417 123 VTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~~ 158 (188)
++++++++++..|+..+.+. ..+.|++| |||+|+..
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 99999999999999988763 34578877 99999954
No 108
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.90 E-value=4.9e-23 Score=151.64 Aligned_cols=111 Identities=21% Similarity=0.333 Sum_probs=95.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
+|+++|++|||||||++++.+. +...+.||+|... ..+..+ .+.+.+||++|++.+...+..+++++|++++|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4799999999999999999865 7778889988643 344444 4789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCCCC
Q psy1417 123 VTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl~~ 158 (188)
+++..+++.+..|+..+.+.. .++|+++ +||+|+..
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 114 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKN 114 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcC
Confidence 999999999999999987643 4688888 99999943
No 109
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.90 E-value=9.7e-23 Score=154.02 Aligned_cols=113 Identities=27% Similarity=0.454 Sum_probs=100.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|++|||||||+++++.+.+...+.++.+ +.....+.+++..+.+++||++|+..+..++..+++.+|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999998888888875 3455667788888999999999999998888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCC
Q psy1417 123 VTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGL 156 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl 156 (188)
+++..+++.+..|+..+.+.. .++|++| +||.|+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 116 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADS 116 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccc
Confidence 999999999999999888754 4588887 999998
No 110
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.90 E-value=1.1e-22 Score=147.52 Aligned_cols=138 Identities=34% Similarity=0.494 Sum_probs=112.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|++|||||||+++++++.+...+.++.+ +........++..+.+.+||++|++.+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 789999999999999999998888888888877 4555667777778999999999999998888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhCC--CceEEE-EEcCCCCC-ccchhh---hhhhcCCCCceEEeeccc
Q psy1417 123 VTSGETFANVKRWLHEIENNCE--VVNRIL-GLRLGLNQ-RSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~~~--~~pilv-gnK~Dl~~-~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
+++.++++.+..|...+..... ..|+++ +||+|+.. +.+..+ ++....+ ..++++++.+
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~ 145 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWG-CPFIETSAKD 145 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcC-CcEEEeccCC
Confidence 9999999999999988888654 788887 99999843 433322 3333333 4567776654
No 111
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=7.2e-23 Score=142.26 Aligned_cols=113 Identities=30% Similarity=0.523 Sum_probs=90.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCC--CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFS--GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
||+|+|+.|||||||+++|.+..+. ..+.++.+.++.............+.+||++|++.+...+...++.+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988776 12233344455555666777777799999999998888877789999999999
Q ss_pred EeCCChhhHHHHH---HHHHHHHhhCCCceEEE-EEcCC
Q psy1417 121 YDVTSGETFANVK---RWLHEIENNCEVVNRIL-GLRLG 155 (188)
Q Consensus 121 ~d~~~~~s~~~~~---~~~~~i~~~~~~~pilv-gnK~D 155 (188)
||+++..|++.+. .|+..+.+..+++|++| |||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 9999999999974 56777777778899887 99998
No 112
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.90 E-value=7.3e-23 Score=152.88 Aligned_cols=115 Identities=26% Similarity=0.439 Sum_probs=98.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEe-CCeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDV-NGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
+||+++|++|||||||++++..+.+... .||.+.+.....+.. ++..+.+.+||++|++++...+..+++++|++++|
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 82 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFV 82 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEE
Confidence 4999999999999999999998887654 678876666555554 34668899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCCC
Q psy1417 121 YDVTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGLN 157 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl~ 157 (188)
||+++..+++.+..|+.++.+.. .+.|++| +||+|+.
T Consensus 83 ~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 83 VDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred EECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 99999999999999988887643 4588887 9999984
No 113
>KOG0083|consensus
Probab=99.90 E-value=8.5e-25 Score=150.85 Aligned_cols=136 Identities=38% Similarity=0.728 Sum_probs=114.8
Q ss_pred EEeCCCCCHHHHHHHHHhCCCCC-CccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEeCC
Q psy1417 46 FLQLVGVGKSSLLIRFSDNTFSG-SYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVT 124 (188)
Q Consensus 46 vvG~~~~GKssLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~ 124 (188)
++|++++|||+|+-|+-.+.|.. ...+|+|.+|..+.+.+++..+++++|||.|+++|+.....|++++|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 68999999999999998877654 45789999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhhCCC-ceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 125 SGETFANVKRWLHEIENNCEV-VNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 125 ~~~s~~~~~~~~~~i~~~~~~-~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
++.||++.+.|+.+|..+... +.+++ |||+|+ ++|.+..+ ++++..++ .++|++.++
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~i-pfmetsakt 144 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGI-PFMETSAKT 144 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCC-Cceeccccc
Confidence 999999999999999997644 44444 999999 55655422 55555554 356666554
No 114
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.90 E-value=1.6e-22 Score=147.26 Aligned_cols=112 Identities=20% Similarity=0.364 Sum_probs=93.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC-CCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT-FSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+|+++|++|||||||+++|.++. +...+.||++.... .+. ...+.+.+||++|++++...+..+++.+|++++||
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 58999999999999999999875 45567888885443 222 24578999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC----CCceEEE-EEcCCCCC
Q psy1417 122 DVTSGETFANVKRWLHEIENNC----EVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~----~~~pilv-gnK~Dl~~ 158 (188)
|+++..++..+..|+..+.+.. .++|+++ +||+|+..
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence 9999999999998988876532 4688887 99999843
No 115
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.89 E-value=3.2e-22 Score=147.88 Aligned_cols=111 Identities=23% Similarity=0.402 Sum_probs=92.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|++|||||||++++.+..+ ..+.+|++... ..+.++ .+.+.+||++|++.+...+..+++.+|++++|||
T Consensus 16 kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (173)
T cd04154 16 RILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVD 90 (173)
T ss_pred EEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 999999999999999999987644 46678887433 344454 3779999999999988888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHh--hCCCceEEE-EEcCCCCC
Q psy1417 123 VTSGETFANVKRWLHEIEN--NCEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~--~~~~~pilv-gnK~Dl~~ 158 (188)
++++.+++.+..|+..+.+ ...++|++| +||+|+.+
T Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 91 SSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG 129 (173)
T ss_pred CCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccccc
Confidence 9999999999888888765 235688887 99999843
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.89 E-value=3.3e-22 Score=148.13 Aligned_cols=111 Identities=26% Similarity=0.378 Sum_probs=93.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|++|||||||++++..+.+.. +.+|++.++. .+.++ .+.+.+||++|++.+...+..+++++|++++|||
T Consensus 17 kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D 91 (174)
T cd04153 17 KVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVID 91 (174)
T ss_pred EEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEE
Confidence 99999999999999999999888765 5788886654 33333 4789999999999998889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCCC
Q psy1417 123 VTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~~ 158 (188)
+++.+++..+..|+..+.+. ..++|+++ +||+|+..
T Consensus 92 ~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 92 STDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 99999999988887777653 25688877 99999854
No 117
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.89 E-value=6.8e-22 Score=146.80 Aligned_cols=139 Identities=35% Similarity=0.497 Sum_probs=110.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
.||+++|++|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++++...+..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 4999999999999999999999988877888776544 456677888888999999999999989999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++..+++.+..|+..+.+.. .+.|+++ +||+|+. .+.+..+ .++...+ ..++++|..+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 147 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWG-AAFLESSARE 147 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcC-CeEEEEeCCC
Confidence 9999999999999888887743 4567777 9999984 3433332 2333323 3466776544
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.88 E-value=5.3e-22 Score=144.44 Aligned_cols=111 Identities=26% Similarity=0.457 Sum_probs=92.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
+|+++|++|||||||++++..+.+.. +.||.+.++. .+.. +..+.+.+||++|++.+...+..+++.+|++++|||
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999888764 4677775543 3333 245789999999999998888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCCC
Q psy1417 123 VTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGLN 157 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl~ 157 (188)
+++..++..+..|+.++.+.. .+.|+++ +||+|+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence 999999999998888876532 5689888 9999984
No 119
>KOG4252|consensus
Probab=99.88 E-value=4.1e-24 Score=154.27 Aligned_cols=132 Identities=31% Similarity=0.556 Sum_probs=119.4
Q ss_pred CCCCCCCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhc
Q psy1417 31 RGKNGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110 (188)
Q Consensus 31 ~~~~~~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~ 110 (188)
-.+.+..+.+ |++|+|..+|||||+|++++.+-|..+|..|+|.++....+.++++.+.+.+||+.|+++|..+...|
T Consensus 12 m~e~d~e~ai--K~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAy 89 (246)
T KOG4252|consen 12 MDETDYERAI--KFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAY 89 (246)
T ss_pred CCchhhhhhE--EEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHH
Confidence 3445555667 99999999999999999999999999999999999999999888888999999999999999999999
Q ss_pred cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC-CCccchhh
Q psy1417 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL-NQRSIDEV 164 (188)
Q Consensus 111 ~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl-~~~~i~~~ 164 (188)
++++++.++||+-+++.||+...+|.+++.+.+..+|.++ -||+|+ ++-+++..
T Consensus 90 yrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~ 145 (246)
T KOG4252|consen 90 YRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKG 145 (246)
T ss_pred hccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchH
Confidence 9999999999999999999999999999999999999776 999998 44444433
No 120
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.88 E-value=1.5e-21 Score=142.04 Aligned_cols=110 Identities=25% Similarity=0.426 Sum_probs=89.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|+++||||||++++..+.+. .+.||++.++. .+.. ..+.+.+||++|++.+...+..+++.++++++|||
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 6899999999999999999877765 45678776553 3333 34789999999999999899999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHh--hCCCceEEE-EEcCCCC
Q psy1417 123 VTSGETFANVKRWLHEIEN--NCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~--~~~~~pilv-gnK~Dl~ 157 (188)
++++.++.....|+..+.+ ...+.|+++ +||+|+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMP 113 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCC
Confidence 9999888887776665543 235688887 9999984
No 121
>KOG1673|consensus
Probab=99.87 E-value=5.7e-22 Score=140.04 Aligned_cols=149 Identities=22% Similarity=0.449 Sum_probs=127.3
Q ss_pred CCCCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhcccc
Q psy1417 34 NGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113 (188)
Q Consensus 34 ~~~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ 113 (188)
....+.+++||.++|++..|||||+-.+.++.+.+++..+.|.++..+.+.+.+..+.+.+||.+|++++..+.+...++
T Consensus 13 ~a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~d 92 (205)
T KOG1673|consen 13 PAVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKD 92 (205)
T ss_pred cccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecC
Confidence 33466677899999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCceEEEEEcCCC----C---Cccchhh--hhhhcCCCCceEEeeccc
Q psy1417 114 THGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRILGLRLGL----N---QRSIDEV--NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 114 ~~~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~pilvgnK~Dl----~---~~~i~~~--~~~~~~~~~~~~e~~~~~ 182 (188)
+-+++++||++.+.++..+..|+.+.++.. ..+||+||+|.|+ + +..+..+ ..++..++.-+|-+++.+
T Consensus 93 svaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~s 171 (205)
T KOG1673|consen 93 SVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHS 171 (205)
T ss_pred cEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccc
Confidence 999999999999999999999999999854 5699999999997 1 1122211 566666666666665543
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.87 E-value=3.2e-21 Score=140.15 Aligned_cols=111 Identities=28% Similarity=0.504 Sum_probs=93.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|.+|||||||++++.++. ...+.++.+.+.. .+.++ .+.+.+||++|++.+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 78999999999999999999887 4456777775543 34444 4789999999999999899999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCCC
Q psy1417 123 VTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~~ 158 (188)
+++++++..+..|+..+.+. ..+.|+++ +||+|+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPG 114 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcc
Confidence 99999999999988887764 35688888 99999843
No 123
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.87 E-value=2.4e-21 Score=141.91 Aligned_cols=112 Identities=29% Similarity=0.456 Sum_probs=91.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC------CCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT------FSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHG 116 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 116 (188)
||+++|++|||||||++++.... ....+.+|++.++. .+.++ ...+.+||++|++.+...+..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 68999999999999999997532 23455677776664 34444 4779999999999999888899999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCCC
Q psy1417 117 VIVVYDVTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 117 vilv~d~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~~ 158 (188)
+++|||.++.+++.....|+..+.+. ..++|+++ +||+|+..
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~ 121 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD 121 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc
Confidence 99999999999999998888887763 35688888 99999843
No 124
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.87 E-value=4e-21 Score=143.62 Aligned_cols=121 Identities=21% Similarity=0.342 Sum_probs=95.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|.+|||||||++++.++.+. .+.||.+... ..+.+++ +++.+||++|+..+...+..+++++|++++|+|
T Consensus 19 ~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD 93 (184)
T smart00178 19 KILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS--EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVD 93 (184)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 9999999999999999999987654 3456666433 2333443 779999999999998889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCCCccchhhhhhhc
Q psy1417 123 VTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLNQRSIDEVNLCHR 169 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~~~~i~~~~~~~~ 169 (188)
++++++++....|+.++.+. ..++|+++ +||+|+.. .++.+++...
T Consensus 94 ~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~-~~~~~~i~~~ 142 (184)
T smart00178 94 AYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY-AASEDELRYA 142 (184)
T ss_pred CCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC-CCCHHHHHHH
Confidence 99999999998888877653 35688887 99999843 3333444333
No 125
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.87 E-value=3.4e-21 Score=147.25 Aligned_cols=116 Identities=37% Similarity=0.606 Sum_probs=103.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|+.|||||||+++|..+.+.+.+.+|++..+........+..+++.+||++|+++++..++.++.+++++++||
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 49999999999999999999999999999999998888777777666889999999999999999999999999999999
Q ss_pred eCCCh-hhHHHHHHHHHHHHhhCC-CceEEE-EEcCCCC
Q psy1417 122 DVTSG-ETFANVKRWLHEIENNCE-VVNRIL-GLRLGLN 157 (188)
Q Consensus 122 d~~~~-~s~~~~~~~~~~i~~~~~-~~pilv-gnK~Dl~ 157 (188)
|.++. .+++....|...+....+ ..|+++ |||+|+.
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (219)
T COG1100 86 DSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLF 124 (219)
T ss_pred ecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccc
Confidence 99994 455556789999999874 688887 9999993
No 126
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.86 E-value=8.6e-21 Score=142.09 Aligned_cols=110 Identities=23% Similarity=0.414 Sum_probs=92.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|++|||||||++++.++.+ ..+.+|.+... ..+.+++ +.+.+||++|+..+...+..+++.++++++|+|
T Consensus 21 ki~ilG~~~~GKStLi~~l~~~~~-~~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D 95 (190)
T cd00879 21 KILFLGLDNAGKTTLLHMLKDDRL-AQHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVD 95 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-cccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEE
Confidence 999999999999999999998776 35677776543 3455554 678999999999888888888999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCCC
Q psy1417 123 VTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGLN 157 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl~ 157 (188)
+++.++++....|+..+.+.. .+.|++| +||+|+.
T Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 96 AADPERFQESKEELDSLLSDEELANVPFLILGNKIDLP 133 (190)
T ss_pred CCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCC
Confidence 999999999888888887632 4588888 9999984
No 127
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.86 E-value=1.2e-20 Score=139.99 Aligned_cols=112 Identities=32% Similarity=0.535 Sum_probs=95.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|.+|||||||++++..+... ...||.|.+. ..+.+++ +.+.+||.+|+..++..|+.++++++++|+|+
T Consensus 15 ~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~--~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVv 89 (175)
T PF00025_consen 15 IKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNI--EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGIIFVV 89 (175)
T ss_dssp EEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEE--EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEEEEE
T ss_pred EEEEEECCCccchHHHHHHhhhcccc-ccCccccccc--ceeeeCc--EEEEEEeccccccccccceeeccccceeEEEE
Confidence 49999999999999999999876543 4678888554 4555665 67999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCCC
Q psy1417 122 DVTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~~ 158 (188)
|.++.+.+.+....+..+... ..++|++| +||+|++.
T Consensus 90 Dssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~ 129 (175)
T PF00025_consen 90 DSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD 129 (175)
T ss_dssp ETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT
T ss_pred ecccceeecccccchhhhcchhhcccceEEEEeccccccC
Confidence 999999999998888887763 35689998 99999843
No 128
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.86 E-value=1.5e-20 Score=135.64 Aligned_cols=111 Identities=26% Similarity=0.507 Sum_probs=94.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
.|+++|++|||||||++++.+..+..++.||++.++. .+..++ +.+.+||++|+..+...+..+++.+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 3799999999999999999999999889999886654 333333 789999999999999889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCC
Q psy1417 123 VTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLN 157 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~ 157 (188)
+++..++.....|+..+... ..++|+++ +||+|+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 114 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLP 114 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 99999998888887777652 25678877 9999984
No 129
>KOG0070|consensus
Probab=99.85 E-value=2.6e-21 Score=140.66 Aligned_cols=111 Identities=23% Similarity=0.458 Sum_probs=97.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
.+|+++|.+++||||++.+|..+++... .||+|.+.. .+.+. .+.+++||.+|+++++..|+.|+++.+++|+|+
T Consensus 18 ~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE--~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVv 92 (181)
T KOG0070|consen 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVE--TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVV 92 (181)
T ss_pred EEEEEEeccCCCceeeeEeeccCCcccC-CCcccccee--EEEEc--ceEEEEEecCCCcccccchhhhccCCcEEEEEE
Confidence 4999999999999999999987776554 899995554 44454 488999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCCC
Q psy1417 122 DVTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGLN 157 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl~ 157 (188)
|.++++.+.++++.+..+..+. .+.|+++ +||.|++
T Consensus 93 DS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~ 131 (181)
T KOG0070|consen 93 DSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLP 131 (181)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcc
Confidence 9999999999998888887755 4789999 9999983
No 130
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.84 E-value=1.1e-19 Score=130.48 Aligned_cols=141 Identities=26% Similarity=0.357 Sum_probs=111.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|.+|+|||||++++....++..+.++.+.++....+..++..+.+.+||++|+..+...+..+++.+++++.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 59999999999999999999988888788888888888777788887788999999999999888888889999999999
Q ss_pred eCCCh-hhHHHHH-HHHHHHHhhCC-CceEEE-EEcCCCCCccchhh--hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSG-ETFANVK-RWLHEIENNCE-VVNRIL-GLRLGLNQRSIDEV--NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~-~s~~~~~-~~~~~i~~~~~-~~pilv-gnK~Dl~~~~i~~~--~~~~~~~~~~~~e~~~~~ 182 (188)
|.... .++.... .|...+.+... +.|+++ +||+|+....+... ......+...+++++..+
T Consensus 82 d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 148 (161)
T TIGR00231 82 DIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAET 148 (161)
T ss_pred EEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCC
Confidence 98887 7777765 78877777655 788888 99999943322222 333334444577766543
No 131
>KOG0073|consensus
Probab=99.84 E-value=6.2e-20 Score=130.71 Aligned_cols=111 Identities=23% Similarity=0.378 Sum_probs=90.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
++|+++|.+|+||||++++|.+.. .+...||.|.+.. .+.+ ..+++++||.+|+..++.+|+.||..+|++|+|+
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Ik--tl~~--~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvv 91 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIK--TLEY--KGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVV 91 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeE--EEEe--cceEEEEEEcCCcchhHHHHHHhhhccCeEEEEE
Confidence 499999999999999999998554 6677899885544 4444 4488999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHh--hCCCceEEE-EEcCCCC
Q psy1417 122 DVTSGETFANVKRWLHEIEN--NCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~--~~~~~pilv-gnK~Dl~ 157 (188)
|.+++..+++....+..+.. ..-..|++| +||+|++
T Consensus 92 DssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 92 DSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred ECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 99999888887655555443 223467666 9999994
No 132
>KOG0071|consensus
Probab=99.84 E-value=4.3e-20 Score=128.45 Aligned_cols=119 Identities=27% Similarity=0.495 Sum_probs=99.6
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
+++|+++|.+++||||++..|..+. +....||+| |+...+++.+ +++++||.+|+++.+++|.+||.+..++|||
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvG--FnvetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCC-Ccccccccc--eeEEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 3499999999999999999998665 445678888 5556666655 7899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHh--hCCCceEEE-EEcCCC-CCccchhh
Q psy1417 121 YDVTSGETFANVKRWLHEIEN--NCEVVNRIL-GLRLGL-NQRSIDEV 164 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~--~~~~~pilv-gnK~Dl-~~~~i~~~ 164 (188)
+|..+.+..+++..-++.+.. +..+.|++| +||.|+ ..+.+.+.
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei 139 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEI 139 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHH
Confidence 999999889999887777766 346688888 999999 45555544
No 133
>PTZ00099 rab6; Provisional
Probab=99.83 E-value=2.2e-19 Score=133.41 Aligned_cols=118 Identities=35% Similarity=0.609 Sum_probs=98.3
Q ss_pred CCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhC
Q psy1417 64 NTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNC 143 (188)
Q Consensus 64 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~ 143 (188)
+.|.+.|.||+|.++..+.+.+++..+.+.+|||+|++++...+..+++++|++++|||++++++|+.+..|+..+.+..
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 56788899999999988888999999999999999999999999999999999999999999999999999999998754
Q ss_pred -CCceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 144 -EVVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 144 -~~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
+++|++| |||+|+. .+.++.. +++...+. .++|+|.++
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~-~~~e~SAk~ 126 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNT-MFHETSAKA 126 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEECCC
Confidence 5688777 9999993 4444433 34444433 578888654
No 134
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.83 E-value=1.5e-19 Score=133.92 Aligned_cols=137 Identities=18% Similarity=0.265 Sum_probs=94.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC-------CCCCccce------eeeeeEEEEEE--e---CCeEEEEEEEeCCCccccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT-------FSGSYITT------IGVDFKIRTID--V---NGEKVKLQIWDTAGQERFR 104 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~-------~~~~~~~t------~~~~~~~~~~~--~---~~~~~~l~l~D~~g~~~~~ 104 (188)
+|+++|+.+||||||+++|++.. +...+.++ .|.++...... + ++..+.+++|||+|++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 78999999999999999998632 22223232 23344333322 2 5677889999999999998
Q ss_pred ccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCccch--hhhhhhcCCCC--ceEEee
Q psy1417 105 TITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSID--EVNLCHRGSVD--GSVEST 179 (188)
Q Consensus 105 ~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~--~~~~~~~~~~~--~~~e~~ 179 (188)
.....+++.+|++++|||+++..+++....|..... .++|+++ +||+|+.+.... ..+++...+.. .++++|
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---NNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVS 158 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEee
Confidence 888889999999999999998877777766654332 3467776 999998432211 23444444442 366776
Q ss_pred ccc
Q psy1417 180 SVD 182 (188)
Q Consensus 180 ~~~ 182 (188)
.++
T Consensus 159 a~~ 161 (179)
T cd01890 159 AKT 161 (179)
T ss_pred ccC
Confidence 544
No 135
>KOG0096|consensus
Probab=99.82 E-value=8.7e-20 Score=132.90 Aligned_cols=121 Identities=29% Similarity=0.527 Sum_probs=112.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+|++++|+.|.|||+++++.+.+.|...|.+|+|.+.......-+.+.+++..|||.|++.+......++-.+.+.+++|
T Consensus 11 fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimF 90 (216)
T KOG0096|consen 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMF 90 (216)
T ss_pred EEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEe
Confidence 39999999999999999999999999999999999988777766666799999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCccch
Q psy1417 122 DVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSID 162 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~ 162 (188)
|++..-++.++..|.+.+.+-+.++||++ |||.|..++.+.
T Consensus 91 dVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k 132 (216)
T KOG0096|consen 91 DVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVK 132 (216)
T ss_pred eeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccc
Confidence 99999999999999999999999999999 999999666633
No 136
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.81 E-value=5.5e-19 Score=129.48 Aligned_cols=136 Identities=15% Similarity=0.117 Sum_probs=87.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCcc--ceeeeeeEEEEEEeCCeEEEEEEEeCCCccccccc---------chhcc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYI--TTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTI---------TSTYY 111 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~---------~~~~~ 111 (188)
+|+++|++|||||||+++|.++.+..... +|.+ ........ ..+.+.+|||||....... .....
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 77 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKS--LFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALA 77 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccc--eeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHH
Confidence 79999999999999999999877643211 1222 12122222 3478999999997421110 00111
Q ss_pred ccCCEEEEEEeCCChhh--HHHHHHHHHHHHhhCCCceEEE-EEcCCC-CCccchhhhhhhcCCCCceEEeeccc
Q psy1417 112 RGTHGVIVVYDVTSGET--FANVKRWLHEIENNCEVVNRIL-GLRLGL-NQRSIDEVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 112 ~~~~~vilv~d~~~~~s--~~~~~~~~~~i~~~~~~~pilv-gnK~Dl-~~~~i~~~~~~~~~~~~~~~e~~~~~ 182 (188)
...|++++|+|+++..+ ++....|+..+.+...+.|+++ +||+|+ ..+.+.+.+.........++++|.++
T Consensus 78 ~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (168)
T cd01897 78 HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLT 152 (168)
T ss_pred hccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecc
Confidence 23689999999998765 4666778888877666788887 999998 44444432222233345577777554
No 137
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.81 E-value=1e-18 Score=128.78 Aligned_cols=110 Identities=24% Similarity=0.401 Sum_probs=89.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|++|||||||++++.+..+. .+.++.|.++ ..+..++ ..+.+||++|+..+...+..+++.++++++|+|
T Consensus 16 ~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D 90 (173)
T cd04155 16 RILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYVID 90 (173)
T ss_pred EEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEe
Confidence 9999999999999999999876553 4567777444 3444454 668999999998888888888999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCC
Q psy1417 123 VTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLN 157 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~ 157 (188)
+++..++.....|+..+.+. ...+|+++ +||+|+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (173)
T cd04155 91 SADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLA 128 (173)
T ss_pred CCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCc
Confidence 99999998888877776653 24588887 9999983
No 138
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.80 E-value=8.9e-19 Score=132.97 Aligned_cols=113 Identities=14% Similarity=0.279 Sum_probs=88.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccC-CEEEEEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGT-HGVIVVY 121 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~-~~vilv~ 121 (188)
+|+++|+++||||+|+++|..+.+...+.++ ..++........+....+.+||+||+.+++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999988877665544 2233222222223457799999999999988888889998 9999999
Q ss_pred eCCCh-hhHHHHHHHHHHHHh----hCCCceEEE-EEcCCC
Q psy1417 122 DVTSG-ETFANVKRWLHEIEN----NCEVVNRIL-GLRLGL 156 (188)
Q Consensus 122 d~~~~-~s~~~~~~~~~~i~~----~~~~~pilv-gnK~Dl 156 (188)
|.++. .++..+..|+..+.. ..+.+|++| +||+|+
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl 121 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDL 121 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhh
Confidence 99987 678888777766543 225789888 999998
No 139
>KOG0075|consensus
Probab=99.79 E-value=9.4e-20 Score=127.68 Aligned_cols=126 Identities=21% Similarity=0.471 Sum_probs=102.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
..+.++|..++|||||++....+.+.+...||+|.+.. .+ ..+.+.+.+||.+|+.+|+.+|+.|++.++++++|+
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr--k~--tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~V 96 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVV 96 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE--Ee--ccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEe
Confidence 37899999999999999999999999999999995443 33 345588999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHh--hCCCceEEE-EEcCCCCCccchhhhhhhcCCC
Q psy1417 122 DVTSGETFANVKRWLHEIEN--NCEVVNRIL-GLRLGLNQRSIDEVNLCHRGSV 172 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~--~~~~~pilv-gnK~Dl~~~~i~~~~~~~~~~~ 172 (188)
|+.+++.++....-++.+.. ....+|++| |||.|++ ..+.+..+..+.++
T Consensus 97 Daad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~-~AL~~~~li~rmgL 149 (186)
T KOG0075|consen 97 DAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLP-GALSKIALIERMGL 149 (186)
T ss_pred ecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCc-ccccHHHHHHHhCc
Confidence 99999988888766666554 335699999 9999984 33444445554444
No 140
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.79 E-value=3e-19 Score=127.63 Aligned_cols=119 Identities=19% Similarity=0.232 Sum_probs=81.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcc-----cccccchhccccCCEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQE-----RFRTITSTYYRGTHGV 117 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~-----~~~~~~~~~~~~~~~v 117 (188)
||+++|++|||||||+++|.+..+ .+.+|.+.++. -.+||++|.. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~~------------~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEYN------------DGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEEc------------CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 899999999999999999987764 34455543332 1689999972 2333333 47899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCccch--h-hhhhhcCCCCceEEeeccc
Q psy1417 118 IVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSID--E-VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 118 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~--~-~~~~~~~~~~~~~e~~~~~ 182 (188)
++|||++++.++.. ..|.... . .|+++ +||+|+.++... . .+++...+...++++|.++
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~----~-~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 129 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF----V-KPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVD 129 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc----c-CCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCC
Confidence 99999999998765 3454432 1 37666 999999433222 2 2445555555678877654
No 141
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.79 E-value=2.5e-18 Score=126.11 Aligned_cols=137 Identities=17% Similarity=0.156 Sum_probs=87.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCc--cceeeeeeEEEEEEeCCeEEEEEEEeCCCccc----ccccchhc---ccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSY--ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER----FRTITSTY---YRG 113 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----~~~~~~~~---~~~ 113 (188)
+|+++|++|||||||+++|.+....... .+|..... ..+..++ ...+.+|||||... ...+...+ ++.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~--~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNL--GVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcc--eEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHh
Confidence 6899999999999999999865432111 11221111 1222333 24799999999632 11222333 345
Q ss_pred CCEEEEEEeCCCh-hhHHHHHHHHHHHHhhC---CCceEEE-EEcCCCC-Cccchhh--hhhhcCCCCceEEeeccc
Q psy1417 114 THGVIVVYDVTSG-ETFANVKRWLHEIENNC---EVVNRIL-GLRLGLN-QRSIDEV--NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 114 ~~~vilv~d~~~~-~s~~~~~~~~~~i~~~~---~~~pilv-gnK~Dl~-~~~i~~~--~~~~~~~~~~~~e~~~~~ 182 (188)
+|++++|+|+++. ++++.+..|++.+.... ...|+++ +||+|+. ...+.+. ++.........++++.++
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 155 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALT 155 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCC
Confidence 9999999999998 79999999999988764 2577666 9999983 3333222 223222234467776554
No 142
>KOG4423|consensus
Probab=99.78 E-value=2.5e-21 Score=140.59 Aligned_cols=145 Identities=33% Similarity=0.632 Sum_probs=125.2
Q ss_pred CCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeE-EEEEEEeCCCcccccccchhccccC
Q psy1417 36 PTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEK-VKLQIWDTAGQERFRTITSTYYRGT 114 (188)
Q Consensus 36 ~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~~l~l~D~~g~~~~~~~~~~~~~~~ 114 (188)
....+ |++|+|+.++|||+++++++...|...|..|+|.++..+.+.++... +++.+||+.|+++|..+..-+++.+
T Consensus 22 r~hL~--k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea 99 (229)
T KOG4423|consen 22 REHLF--KVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEA 99 (229)
T ss_pred hhhhh--hhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCC
Confidence 34456 99999999999999999999888888899999999988888776544 6799999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhC--CC---ceEEE-EEcCCCCCccchh-----hhhhhcCCCCceEEeeccc
Q psy1417 115 HGVIVVYDVTSGETFANVKRWLHEIENNC--EV---VNRIL-GLRLGLNQRSIDE-----VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 115 ~~vilv~d~~~~~s~~~~~~~~~~i~~~~--~~---~pilv-gnK~Dl~~~~i~~-----~~~~~~~~~~~~~e~~~~~ 182 (188)
++.++|||+++.-+|+....|...+.... |+ +|+++ .||||.....+.+ .+++.++++.+++|++.+.
T Consensus 100 ~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Ke 178 (229)
T KOG4423|consen 100 HGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKE 178 (229)
T ss_pred cceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccc
Confidence 99999999999999999999999998733 33 67777 9999995443333 4899999999999998765
No 143
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.77 E-value=1.2e-17 Score=118.54 Aligned_cols=136 Identities=45% Similarity=0.716 Sum_probs=102.5
Q ss_pred EEeCCCCCHHHHHHHHHhCCC-CCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEeCC
Q psy1417 46 FLQLVGVGKSSLLIRFSDNTF-SGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVT 124 (188)
Q Consensus 46 vvG~~~~GKssLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~ 124 (188)
++|++|+|||||++++.+... .....++. .++........+....+.+||++|...+.......++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998776 45556666 6677777777777889999999999888777778889999999999999
Q ss_pred ChhhHHHHHHHH--HHHHhhCCCceEEE-EEcCCCCCcc-chh---hhhhhcCCCCceEEeeccc
Q psy1417 125 SGETFANVKRWL--HEIENNCEVVNRIL-GLRLGLNQRS-IDE---VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 125 ~~~s~~~~~~~~--~~i~~~~~~~pilv-gnK~Dl~~~~-i~~---~~~~~~~~~~~~~e~~~~~ 182 (188)
+..++..+..|. ........+.|+++ +||+|+.... ... ...........+++++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 144 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKT 144 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCC
Confidence 999999998873 33333556788887 9999983222 222 2233444456667776544
No 144
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.77 E-value=2.5e-18 Score=129.42 Aligned_cols=112 Identities=18% Similarity=0.237 Sum_probs=82.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHh--CCCCCCc------------cceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccch
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD--NTFSGSY------------ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITS 108 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~ 108 (188)
+|+++|+.+||||||+++|+. +.+...+ .++.|.++......++...+.+.+|||+|+++|.....
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 899999999999999999996 5554432 23345545545455555668899999999999998889
Q ss_pred hccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 109 TYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 109 ~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
.+++.+|++++|||+++.. +.....|+..+.. .++|+++ +||+|+.
T Consensus 84 ~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~ 130 (194)
T cd01891 84 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--LGLKPIVVINKIDRP 130 (194)
T ss_pred HHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH--cCCCEEEEEECCCCC
Confidence 9999999999999998742 2333344444433 2467666 9999984
No 145
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.75 E-value=1.2e-17 Score=121.52 Aligned_cols=109 Identities=16% Similarity=0.166 Sum_probs=73.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC---CCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN---TFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIV 119 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vil 119 (188)
.|+++|+++||||||+++|.+. .+..++.++...+.....+.+.+ ...+.+|||||++++......+++.+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 6899999999999999999853 33333333322233333444442 3579999999999887666667889999999
Q ss_pred EEeCCC---hhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 120 VYDVTS---GETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 120 v~d~~~---~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
|+|+++ .++.+.+. .+... ...|+++ +||+|+.
T Consensus 81 V~d~~~~~~~~~~~~~~----~~~~~-~~~~~ilv~NK~Dl~ 117 (164)
T cd04171 81 VVAADEGIMPQTREHLE----ILELL-GIKRGLVVLTKADLV 117 (164)
T ss_pred EEECCCCccHhHHHHHH----HHHHh-CCCcEEEEEECcccc
Confidence 999987 33433332 22222 2236666 9999994
No 146
>KOG3883|consensus
Probab=99.75 E-value=2.1e-17 Score=116.66 Aligned_cols=130 Identities=20% Similarity=0.274 Sum_probs=97.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCC--CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccc-cccchhccccCCEEEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFS--GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERF-RTITSTYYRGTHGVIV 119 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~-~~~~~~~~~~~~~vil 119 (188)
|++++|..++|||+++.+++.++.. .++.||++.-|..-.-+-.|-.-.+.+|||.|-... ..+-.+|+.-+|++++
T Consensus 11 kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVL 90 (198)
T KOG3883|consen 11 KVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVL 90 (198)
T ss_pred EEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceEEE
Confidence 9999999999999999999876543 356788874444333333455567999999998777 4555778899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCC-CCccchhh---hhhhcCCC
Q psy1417 120 VYDVTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSV 172 (188)
Q Consensus 120 v~d~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~ 172 (188)
|||..+.+||+.+.....+|.+.. ..+||+| |||+|+ ..+.++.+ .+|+....
T Consensus 91 VYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkv 150 (198)
T KOG3883|consen 91 VYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKV 150 (198)
T ss_pred EecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhhe
Confidence 999999999999876666677643 3489988 999999 34444432 45555443
No 147
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.75 E-value=2.8e-17 Score=124.49 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=87.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCC--ccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccc---------cccchhcc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGS--YITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERF---------RTITSTYY 111 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~---------~~~~~~~~ 111 (188)
+|+++|++|||||||++++.+..+... +.+|.. .....+.+++. ..+.+||++|.... .... ..+
T Consensus 43 ~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~ 118 (204)
T cd01878 43 TVALVGYTNAGKSTLFNALTGADVYAEDQLFATLD--PTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-EEV 118 (204)
T ss_pred eEEEECCCCCCHHHHHHHHhcchhccCCccceecc--ceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-HHH
Confidence 999999999999999999998764322 233333 22233444432 36899999997321 1111 125
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCCCC-ccchhhhhhhcCCCCceEEeeccc
Q psy1417 112 RGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGLNQ-RSIDEVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 112 ~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl~~-~~i~~~~~~~~~~~~~~~e~~~~~ 182 (188)
..+|++++|+|+++..++.....|...+.... .+.|+++ +||+|+.. ..+. +... ......+++|..+
T Consensus 119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~--~~~~-~~~~~~~~~Sa~~ 189 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE--ERLE-AGRPDAVFISAKT 189 (204)
T ss_pred hcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH--HHhh-cCCCceEEEEcCC
Confidence 67999999999999988888888877776643 3577777 99999833 2222 2222 2334466776544
No 148
>KOG0074|consensus
Probab=99.74 E-value=2e-17 Score=115.37 Aligned_cols=116 Identities=24% Similarity=0.459 Sum_probs=94.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||.++|..++|||||+++|...+ +....||-| |+.+.+.+++ .+++++||.+|+...+++|..||.+.|++|+|+|
T Consensus 19 rilllGldnAGKTT~LKqL~sED-~~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVID 94 (185)
T KOG0074|consen 19 RILLLGLDNAGKTTFLKQLKSED-PRHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVID 94 (185)
T ss_pred EEEEEecCCCcchhHHHHHccCC-hhhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEEEEe
Confidence 99999999999999999997554 334467777 5555665553 5789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCC-CCccch
Q psy1417 123 VTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGL-NQRSID 162 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl-~~~~i~ 162 (188)
.+++..|+++..-+-++... ...+|++| .||+|+ .+..++
T Consensus 95 S~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~e 138 (185)
T KOG0074|consen 95 STDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVE 138 (185)
T ss_pred CCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchH
Confidence 99999999987665555553 24589999 999997 444443
No 149
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.73 E-value=3.9e-17 Score=119.48 Aligned_cols=112 Identities=15% Similarity=0.117 Sum_probs=78.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeC-CeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVN-GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
.|+++|++|+|||||+++|..+.+.....++...+.....+..+ +....+.+|||||++.+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999887765433333333333333333 23577999999999988888888889999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 122 DVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
|+++....+... .+..+.. .++|+++ +||+|+.
T Consensus 82 d~~~~~~~~~~~-~~~~~~~--~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 82 AADDGVMPQTIE-AIKLAKA--ANVPFIVALNKIDKP 115 (168)
T ss_pred ECCCCccHHHHH-HHHHHHH--cCCCEEEEEEceecc
Confidence 998743222111 1122222 3467776 9999984
No 150
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.72 E-value=1.6e-16 Score=133.11 Aligned_cols=108 Identities=21% Similarity=0.222 Sum_probs=80.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCC--CCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccccc--------chhccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTF--SGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTI--------TSTYYR 112 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~--------~~~~~~ 112 (188)
||+++|++|||||||+++|.+... ...+ +....++....+.+++ +.+.+|||+|...+... ...+++
T Consensus 205 kVvIvG~~nvGKSSLiN~L~~~~~aivs~~-pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~ 281 (442)
T TIGR00450 205 KLAIVGSPNVGKSSLLNALLKQDRAIVSDI-KGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKAIK 281 (442)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCcccCCC-CCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHHHh
Confidence 999999999999999999997642 2233 3334455566677776 45789999998654322 134678
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 113 GTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 113 ~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
.+|++++|||++++.+++.. |+..+.. .+.|+++ +||+|+.
T Consensus 282 ~aD~il~V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~ 323 (442)
T TIGR00450 282 QADLVIYVLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLK 323 (442)
T ss_pred hCCEEEEEEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCC
Confidence 89999999999998887765 7666643 3478766 9999984
No 151
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.71 E-value=2.2e-16 Score=133.73 Aligned_cols=134 Identities=17% Similarity=0.159 Sum_probs=88.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCC-CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccc--------ccccchhcccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFS-GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER--------FRTITSTYYRG 113 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~--------~~~~~~~~~~~ 113 (188)
+|+|+|.+|||||||+++|.+.... ....+.+..+.....+.+++. .+.+|||+|.+. +......+++.
T Consensus 40 ~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 117 (472)
T PRK03003 40 VVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAMRT 117 (472)
T ss_pred EEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHHHh
Confidence 9999999999999999999976532 233344444444445555554 588999999753 22334556889
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCccchhhhhhhcCCCCceEEeeccc
Q psy1417 114 THGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSIDEVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 114 ~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~~~~~~~~~~~~~~~e~~~~~ 182 (188)
+|++++|||+++..++.. ..|...+.+ .+.|+++ +||+|+........+ ....+...++++|..+
T Consensus 118 aD~il~VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~~~~~~~~~-~~~~g~~~~~~iSA~~ 183 (472)
T PRK03003 118 ADAVLFVVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDERGEADAAA-LWSLGLGEPHPVSALH 183 (472)
T ss_pred CCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCCccchhhHH-HHhcCCCCeEEEEcCC
Confidence 999999999998766543 334444543 3478877 999998433222222 2234555667776543
No 152
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.70 E-value=1.9e-16 Score=136.99 Aligned_cols=137 Identities=18% Similarity=0.254 Sum_probs=95.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC-------CCCCccce------eeeeeEEEEE--Ee---CCeEEEEEEEeCCCccccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT-------FSGSYITT------IGVDFKIRTI--DV---NGEKVKLQIWDTAGQERFR 104 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~-------~~~~~~~t------~~~~~~~~~~--~~---~~~~~~l~l~D~~g~~~~~ 104 (188)
||+++|+.++|||||+++|+... +...+..+ .|.++....+ .+ ++..+.+++|||||+..|.
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 89999999999999999998642 22222222 2444443333 22 4667899999999999998
Q ss_pred ccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCccch--hhhhhhcCCCC--ceEEee
Q psy1417 105 TITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSID--EVNLCHRGSVD--GSVEST 179 (188)
Q Consensus 105 ~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~--~~~~~~~~~~~--~~~e~~ 179 (188)
.....+++.+|++++|||+++..+.+....|...+. .++|+++ +||+|+.....+ ..+++...+.. ..+++|
T Consensus 85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~vS 161 (595)
T TIGR01393 85 YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILAS 161 (595)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEee
Confidence 888899999999999999999877777777765543 2467776 999999533222 12444444432 345665
Q ss_pred ccc
Q psy1417 180 SVD 182 (188)
Q Consensus 180 ~~~ 182 (188)
.++
T Consensus 162 Akt 164 (595)
T TIGR01393 162 AKT 164 (595)
T ss_pred ccC
Confidence 543
No 153
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.70 E-value=2e-16 Score=114.48 Aligned_cols=128 Identities=15% Similarity=0.109 Sum_probs=83.6
Q ss_pred EEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccccc------chhccc--cCCEE
Q psy1417 46 FLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTI------TSTYYR--GTHGV 117 (188)
Q Consensus 46 vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~------~~~~~~--~~~~v 117 (188)
++|++|||||||++++.+..+...+.++...+.....+.+++ ..+.+|||||+..+... ...++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999987764444444444445555666665 46899999998776542 344554 89999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC-Cccch--hhhhhhcCCCCceEEeecc
Q psy1417 118 IVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN-QRSID--EVNLCHRGSVDGSVESTSV 181 (188)
Q Consensus 118 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~-~~~i~--~~~~~~~~~~~~~~e~~~~ 181 (188)
++|+|+++.++. ..|..++.+. ++|+++ +||+|+. ...+. .+++....+. ..++++..
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~iSa~ 140 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLEL--GLPVVVALNMIDEAEKRGIKIDLDKLSELLGV-PVVPTSAR 140 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHHc--CCCEEEEEehhhhcccccchhhHHHHHHhhCC-CeEEEEcc
Confidence 999999876543 2344444433 477777 9999993 33232 2234333332 45666544
No 154
>PRK15494 era GTPase Era; Provisional
Probab=99.70 E-value=2.5e-16 Score=128.16 Aligned_cols=136 Identities=14% Similarity=0.222 Sum_probs=83.4
Q ss_pred CcccceeEEEEeCCCCCHHHHHHHHHhCCCC---CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccc-ccccch----
Q psy1417 37 THIFSQKSSFLQLVGVGKSSLLIRFSDNTFS---GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER-FRTITS---- 108 (188)
Q Consensus 37 ~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-~~~~~~---- 108 (188)
.+.. +|+++|++|||||||+++|.+.++. +.+.+|.+ .....+..++ .++.+|||||... +.....
T Consensus 50 ~k~~--kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~--~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r 123 (339)
T PRK15494 50 QKTV--SVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRS--IITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVR 123 (339)
T ss_pred ccee--EEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccC--cEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHH
Confidence 3444 9999999999999999999987653 22233322 2233445555 4689999999743 222211
Q ss_pred ---hccccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCceEEEEEcCCCCCccchhh-hhhhcCC-CCceEEeecc
Q psy1417 109 ---TYYRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRILGLRLGLNQRSIDEV-NLCHRGS-VDGSVESTSV 181 (188)
Q Consensus 109 ---~~~~~~~~vilv~d~~~~~s~~~~~-~~~~~i~~~~~~~pilvgnK~Dl~~~~i~~~-~~~~~~~-~~~~~e~~~~ 181 (188)
..+.++|++++|+|..+ ++.... .|+..+... ...|++|+||+|+....+.+. +.+.... ...++.+|..
T Consensus 124 ~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~-~~p~IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 124 CAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL-NIVPIFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred HHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc-CCCEEEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEecc
Confidence 23678999999999765 455554 355555432 234555599999943332222 3333222 2456666654
No 155
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.69 E-value=3e-16 Score=116.65 Aligned_cols=108 Identities=18% Similarity=0.254 Sum_probs=72.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcc----------cccccchhccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQE----------RFRTITSTYYR 112 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~----------~~~~~~~~~~~ 112 (188)
+|+|+|++|+|||||++++.+..+...+.++.+..........++ .+.+||+||.. .+......+++
T Consensus 20 ~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~ 96 (179)
T TIGR03598 20 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLE 96 (179)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHHHHHH
Confidence 999999999999999999998765555556665444333333332 58999999942 23333334444
Q ss_pred ---cCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 113 ---GTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 113 ---~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
.++++++|+|.+++.+..... ++..+... +.|+++ +||+|+
T Consensus 97 ~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~~--~~pviiv~nK~D~ 141 (179)
T TIGR03598 97 KRENLKGVVLLMDIRHPLKELDLE-MLEWLRER--GIPVLIVLTKADK 141 (179)
T ss_pred hChhhcEEEEEecCCCCCCHHHHH-HHHHHHHc--CCCEEEEEECccc
Confidence 357999999998765544442 22333322 477777 999998
No 156
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.69 E-value=2.1e-16 Score=128.98 Aligned_cols=111 Identities=18% Similarity=0.225 Sum_probs=80.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCC--ccceeeeeeEEEEEEeCCeEEEEEEEeCCCcc---------cccccchhcc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGS--YITTIGVDFKIRTIDVNGEKVKLQIWDTAGQE---------RFRTITSTYY 111 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~---------~~~~~~~~~~ 111 (188)
+|+++|.+|||||||+++|.+...... ..+|. +.....+.+.+. ..+.+|||+|.. .|...+. .+
T Consensus 191 ~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~--d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tle-~~ 266 (351)
T TIGR03156 191 TVALVGYTNAGKSTLFNALTGADVYAADQLFATL--DPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATLE-EV 266 (351)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeccCCcccc--CCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHHH-HH
Confidence 999999999999999999997764322 22343 334455556322 468999999972 2222222 36
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCCC
Q psy1417 112 RGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGLN 157 (188)
Q Consensus 112 ~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl~ 157 (188)
.++|++++|+|++++.+++.+..|...+.... .+.|+++ +||+|+.
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 78999999999999988888777766666533 3578776 9999983
No 157
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.69 E-value=4.1e-16 Score=114.77 Aligned_cols=134 Identities=17% Similarity=0.216 Sum_probs=85.7
Q ss_pred EEeCCCCCHHHHHHHHHhCCCC-CCc-cceeeeeeEEEEEEeCCeEEEEEEEeCCCccc----ccccc---hhccccCCE
Q psy1417 46 FLQLVGVGKSSLLIRFSDNTFS-GSY-ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER----FRTIT---STYYRGTHG 116 (188)
Q Consensus 46 vvG~~~~GKssLi~~l~~~~~~-~~~-~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----~~~~~---~~~~~~~~~ 116 (188)
++|++|||||||+++|.+.... ..+ .+|....+. .+.++ ....+.+||+||... ..... ...++.+|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLG--VVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcce--EEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCE
Confidence 5899999999999999977541 222 233332222 23344 135689999999632 11121 234678999
Q ss_pred EEEEEeCCCh------hhHHHHHHHHHHHHhhC--------CCceEEE-EEcCCCC-Cccchhh--hhhhcCCCCceEEe
Q psy1417 117 VIVVYDVTSG------ETFANVKRWLHEIENNC--------EVVNRIL-GLRLGLN-QRSIDEV--NLCHRGSVDGSVES 178 (188)
Q Consensus 117 vilv~d~~~~------~s~~~~~~~~~~i~~~~--------~~~pilv-gnK~Dl~-~~~i~~~--~~~~~~~~~~~~e~ 178 (188)
+++|+|+++. .+++.+..|...+.... .+.|+++ +||+|+. ...+... ...........+++
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPI 157 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEE
Confidence 9999999987 57888888888887643 3578877 9999983 3333332 22233334456776
Q ss_pred eccc
Q psy1417 179 TSVD 182 (188)
Q Consensus 179 ~~~~ 182 (188)
+..+
T Consensus 158 Sa~~ 161 (176)
T cd01881 158 SAKT 161 (176)
T ss_pred ehhh
Confidence 6543
No 158
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.68 E-value=6e-16 Score=125.45 Aligned_cols=136 Identities=18% Similarity=0.136 Sum_probs=88.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCC-Cc-cceeeeeeEEEEEEeCCeEEEEEEEeCCCccc-------ccccchhcccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSG-SY-ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER-------FRTITSTYYRG 113 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~-~~-~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-------~~~~~~~~~~~ 113 (188)
.|.+||.++||||||++++...+... .| .+|...... .+.+. ....+.+||+||.-+ .....-..+++
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G--~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLG--VVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEE--EEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 67899999999999999998654321 22 133332222 23332 224589999999632 11122234668
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhCC---CceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 114 THGVIVVYDVTSGETFANVKRWLHEIENNCE---VVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 114 ~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~---~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
++++++|+|+++.++++.+..|..++..+.+ +.|++| +||+|+. ...+.+. .++...+ ...+++|..+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~-~~i~~iSAkt 312 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALG-GPVFLISAVT 312 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcC-CCEEEEEcCC
Confidence 9999999999988889999999999987653 578777 9999983 3333322 1222222 3456666543
No 159
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.68 E-value=1.4e-15 Score=109.55 Aligned_cols=130 Identities=19% Similarity=0.087 Sum_probs=83.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCC-CccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccccc--------chhccc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSG-SYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTI--------TSTYYR 112 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~--------~~~~~~ 112 (188)
++|+++|++|+|||||++++.+..... ...+....++....+..++ ..+.+||+||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 389999999999999999998765321 1122223233333444444 56899999997655322 123567
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCccchhhhhhhcCCCCceEEeeccc
Q psy1417 113 GTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSIDEVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 113 ~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~~~~~~~~~~~~~~~e~~~~~ 182 (188)
.+|++++|+|+++..+......|.. ....|+++ +||+|+...... ........+++++..+
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~~~~~~----~~~~~~~~~~~~Sa~~ 141 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLLPDSEL----LSLLAGKPIIAISAKT 141 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcCCcccc----ccccCCCceEEEECCC
Confidence 8999999999998877776655433 34577777 999998322211 2222334556665443
No 160
>PRK04213 GTP-binding protein; Provisional
Probab=99.68 E-value=1.2e-16 Score=120.73 Aligned_cols=107 Identities=16% Similarity=0.153 Sum_probs=69.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCC-----------cccccccchhcc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAG-----------QERFRTITSTYY 111 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g-----------~~~~~~~~~~~~ 111 (188)
+|+++|++|||||||+++|.+..+...+.++. ++....+.++ .+.+|||+| ++.+...+..++
T Consensus 11 ~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 11 EIVFVGRSNVGKSTLVRELTGKKVRVGKRPGV--TRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccCCCCce--eeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 99999999999999999999877655544543 3333333333 489999999 455655555554
Q ss_pred c----cCCEEEEEEeCCChhhH-HH--------H-HHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 112 R----GTHGVIVVYDVTSGETF-AN--------V-KRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 112 ~----~~~~vilv~d~~~~~s~-~~--------~-~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
. .++++++|+|.++...+ +. . ......+.. .++|+++ +||+|+.
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~ 143 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKI 143 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECcccc
Confidence 3 35788888887653221 00 0 111222222 3577777 9999983
No 161
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.67 E-value=8.8e-16 Score=129.19 Aligned_cols=108 Identities=21% Similarity=0.137 Sum_probs=78.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCC-CCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccccc--------chhcccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTF-SGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTI--------TSTYYRG 113 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~--------~~~~~~~ 113 (188)
||+++|.+|||||||+++|.+.+. .....+....++....+.+++ ..+.+|||+|...+... ...+++.
T Consensus 217 kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~ 294 (449)
T PRK05291 217 KVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAIEE 294 (449)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHh
Confidence 999999999999999999997653 122223333345555666666 56899999998654322 1235788
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 114 THGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 114 ~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
+|++++|||++++.+++....|.. ..+.|+++ +||+|+.
T Consensus 295 aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~ 334 (449)
T PRK05291 295 ADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLT 334 (449)
T ss_pred CCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhcc
Confidence 999999999999888776655543 44578776 9999983
No 162
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.66 E-value=1.7e-15 Score=127.13 Aligned_cols=132 Identities=17% Similarity=0.122 Sum_probs=85.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCC-CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccc--------ccccchhcccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFS-GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER--------FRTITSTYYRG 113 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~--------~~~~~~~~~~~ 113 (188)
+|+++|.+|||||||+++|.+.... ....+....+.....+.+++ ..+.+|||+|.+. +......++..
T Consensus 3 ~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 8999999999999999999876531 11123333344445556666 6799999999876 22223456788
Q ss_pred CCEEEEEEeCCChhhHH--HHHHHHHHHHhhCCCceEEE-EEcCCCCCccchhhhhhhcCCCCceEEeeccc
Q psy1417 114 THGVIVVYDVTSGETFA--NVKRWLHEIENNCEVVNRIL-GLRLGLNQRSIDEVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 114 ~~~vilv~d~~~~~s~~--~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~~~~~~~~~~~~~~~e~~~~~ 182 (188)
+|++++|+|+++..+.. .+.+|+... +.|+++ +||+|+.+......++ ...+...++++|..+
T Consensus 81 ad~il~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~~~~~~~~~~-~~lg~~~~~~iSa~~ 146 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEEIAKILRKS-----NKPVILVVNKVDGPDEEADAYEF-YSLGLGEPYPISAEH 146 (435)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCccchhhHHHH-HhcCCCCCEEEEeeC
Confidence 99999999998754432 334554432 478777 9999974322222222 344555566666543
No 163
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.66 E-value=1.6e-15 Score=109.42 Aligned_cols=131 Identities=15% Similarity=0.079 Sum_probs=81.3
Q ss_pred EEEeCCCCCHHHHHHHHHhCC--CCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccc--------cchhccccC
Q psy1417 45 SFLQLVGVGKSSLLIRFSDNT--FSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT--------ITSTYYRGT 114 (188)
Q Consensus 45 ~vvG~~~~GKssLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~--------~~~~~~~~~ 114 (188)
+++|.+|||||||++++.+.. +.....+ ...+........++ ..+.+|||||...+.. .....++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPG-VTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCC-ceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 479999999999999998764 2222222 22223333444444 6799999999877543 233457889
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCccchhhhhhhcCCCCceEEeeccc
Q psy1417 115 HGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSIDEVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 115 ~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~~~~~~~~~~~~~~~e~~~~~ 182 (188)
|++++|+|..+..+.... .....+.+. +.|+++ +||+|+...... .+.....+....++++.++
T Consensus 78 d~ii~v~d~~~~~~~~~~-~~~~~~~~~--~~piiiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~Sa~~ 142 (157)
T cd01894 78 DVILFVVDGREGLTPADE-EIAKYLRKS--KKPVILVVNKVDNIKEEDE-AAEFYSLGFGEPIPISAEH 142 (157)
T ss_pred CEEEEEEeccccCCccHH-HHHHHHHhc--CCCEEEEEECcccCChHHH-HHHHHhcCCCCeEEEeccc
Confidence 999999999876544332 122223322 377777 999998443322 2223334555667777553
No 164
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.65 E-value=2.8e-15 Score=121.37 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=86.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCC-Ccc-ceeeeeeEEEEEEeCCeEEEEEEEeCCCcccc----cccchh---ccc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSG-SYI-TTIGVDFKIRTIDVNGEKVKLQIWDTAGQERF----RTITST---YYR 112 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~-~~~-~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~----~~~~~~---~~~ 112 (188)
..|+++|.++||||||++++...+... .|. +|..... -.+.+++ ...+.+||+||..+. ..+... .++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~i--g~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhie 234 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNL--GVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIE 234 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEE--EEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence 378899999999999999998765321 121 2222122 1233332 356899999996421 122222 345
Q ss_pred cCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhC---CCceEEE-EEcCCCCC-ccchhh--hhhhcCCCCceEEeeccc
Q psy1417 113 GTHGVIVVYDVTSG---ETFANVKRWLHEIENNC---EVVNRIL-GLRLGLNQ-RSIDEV--NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 113 ~~~~vilv~d~~~~---~s~~~~~~~~~~i~~~~---~~~pilv-gnK~Dl~~-~~i~~~--~~~~~~~~~~~~e~~~~~ 182 (188)
+++++++|+|+++. ++++.+..|..++.... .+.|++| +||+|+.. ..+.+. ++++..+ ...+++|.++
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~-~~vi~iSAkt 313 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALG-KPVFPISALT 313 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcC-CcEEEEEccC
Confidence 79999999999976 67888888888887654 3577777 99999833 222211 2333333 3466666544
No 165
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.65 E-value=4.6e-15 Score=128.05 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=84.0
Q ss_pred CCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCC
Q psy1417 36 PTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTH 115 (188)
Q Consensus 36 ~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~ 115 (188)
..+.. +|+++|+.++|||||+++|.+.++...+.+.+..+.....+.+++. ..+.+|||||++.|..++...+..+|
T Consensus 84 ~~r~p--~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aD 160 (587)
T TIGR00487 84 VERPP--VVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTD 160 (587)
T ss_pred ccCCC--EEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCC
Confidence 34556 9999999999999999999988776655444444444445555433 26899999999999988888899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC
Q psy1417 116 GVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 116 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~ 158 (188)
++++|||+++...-+....+ .... ..++|+++ +||+|+..
T Consensus 161 iaILVVda~dgv~~qT~e~i-~~~~--~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 161 IVVLVVAADDGVMPQTIEAI-SHAK--AANVPIIVAINKIDKPE 201 (587)
T ss_pred EEEEEEECCCCCCHhHHHHH-HHHH--HcCCCEEEEEECccccc
Confidence 99999998874322222222 2222 23478887 99999854
No 166
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=3.8e-15 Score=108.48 Aligned_cols=120 Identities=25% Similarity=0.372 Sum_probs=90.0
Q ss_pred cceeEEEEeCCCCCHHHHHHHHHhCCC--------CCC----ccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy1417 40 FSQKSSFLQLVGVGKSSLLIRFSDNTF--------SGS----YITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTIT 107 (188)
Q Consensus 40 ~~~ki~vvG~~~~GKssLi~~l~~~~~--------~~~----~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~ 107 (188)
...||+|+|+-++||||++++++.... ..+ ...|+..+|....+. ....+.+++||||++|..+|
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~---~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD---EDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc---CcceEEEecCCCcHHHHHHH
Confidence 345999999999999999999986542 111 124666666655442 23568999999999999999
Q ss_pred hhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC-Cccchhh
Q psy1417 108 STYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN-QRSIDEV 164 (188)
Q Consensus 108 ~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~-~~~i~~~ 164 (188)
..+++++.+.|+++|.+....+ .....+..+....+ +|++| .||.|+. ....++.
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~-ip~vVa~NK~DL~~a~ppe~i 142 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP-IPVVVAINKQDLFDALPPEKI 142 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC-CCEEEEeeccccCCCCCHHHH
Confidence 9999999999999999999888 44444444443333 99999 9999994 4444433
No 167
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.64 E-value=3.4e-15 Score=126.58 Aligned_cols=113 Identities=19% Similarity=0.167 Sum_probs=80.0
Q ss_pred cccceeEEEEeCCCCCHHHHHHHHHhCCCC-CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcc----------ccccc
Q psy1417 38 HIFSQKSSFLQLVGVGKSSLLIRFSDNTFS-GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQE----------RFRTI 106 (188)
Q Consensus 38 ~~~~~ki~vvG~~~~GKssLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~----------~~~~~ 106 (188)
..+ ||+++|.++||||||+++|++..+. ....++...+.....+.+++.. +.+|||+|.. .+...
T Consensus 210 ~~~--kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~ 285 (472)
T PRK03003 210 GPR--RVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASL 285 (472)
T ss_pred cce--EEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHH
Confidence 345 9999999999999999999977642 2333444444445566667654 6799999952 22222
Q ss_pred c-hhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 107 T-STYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 107 ~-~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
. ..+++.+|++++|+|+++..+++.+. ++..+.. .+.|++| +||+|+.
T Consensus 286 ~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~--~~~piIiV~NK~Dl~ 335 (472)
T PRK03003 286 RTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE--AGRALVLAFNKWDLV 335 (472)
T ss_pred HHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccC
Confidence 2 23578999999999999988887764 4444443 3478777 9999993
No 168
>KOG0076|consensus
Probab=99.64 E-value=2.4e-16 Score=113.55 Aligned_cols=112 Identities=24% Similarity=0.404 Sum_probs=91.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC-------CCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN-------TFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTH 115 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~ 115 (188)
.++++|.+++|||||+...-.. --+.+-.+|+|.+.....+ . ...+.+||.+|++..+.+|..||..+|
T Consensus 19 ~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v--~--~~~l~fwdlgGQe~lrSlw~~yY~~~H 94 (197)
T KOG0076|consen 19 SVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV--C--NAPLSFWDLGGQESLRSLWKKYYWLAH 94 (197)
T ss_pred hheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee--c--cceeEEEEcCChHHHHHHHHHHHHHhc
Confidence 7899999999999999887521 1123456888877764444 3 356999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHh--hCCCceEEE-EEcCCCCC
Q psy1417 116 GVIVVYDVTSGETFANVKRWLHEIEN--NCEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 116 ~vilv~d~~~~~s~~~~~~~~~~i~~--~~~~~pilv-gnK~Dl~~ 158 (188)
++++++|+++++.|+..+.-++.+.. ...++|+++ +||.|+++
T Consensus 95 ~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~ 140 (197)
T KOG0076|consen 95 GIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQN 140 (197)
T ss_pred eeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhh
Confidence 99999999999999998876666665 447799999 99999943
No 169
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.64 E-value=3.6e-15 Score=117.90 Aligned_cols=132 Identities=17% Similarity=0.138 Sum_probs=80.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCC--CccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccc--------cchhccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSG--SYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT--------ITSTYYR 112 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~--------~~~~~~~ 112 (188)
+|+++|.+|||||||+|+|.+.++.. ....|.. . ....+...+ ..++.+|||||...... ....+++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr-~-~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTR-N-RISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCccc-C-cEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 68999999999999999999876431 1111211 1 112222222 25689999999643211 1234578
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC-ccchh--hhhhhcCCCCceEEeecc
Q psy1417 113 GTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ-RSIDE--VNLCHRGSVDGSVESTSV 181 (188)
Q Consensus 113 ~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~-~~i~~--~~~~~~~~~~~~~e~~~~ 181 (188)
++|++++|+|+++..+.+ ..++..+.. .+.|+++ +||+|+.. ..+.+ .+++...+....+..|.+
T Consensus 79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~ 147 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG--EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISAL 147 (270)
T ss_pred hCCEEEEEEECCCCCchH--HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecC
Confidence 899999999999876664 334444443 2477776 99999832 22211 133333344456666654
No 170
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.64 E-value=1.7e-14 Score=120.05 Aligned_cols=136 Identities=13% Similarity=0.159 Sum_probs=86.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCC-Cc-cceeeeeeEEEEEEeCCeEEEEEEEeCCCccc----ccccchh---cccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSG-SY-ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER----FRTITST---YYRG 113 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~-~~-~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----~~~~~~~---~~~~ 113 (188)
.|+++|.++||||||++++.+.+... .| -+|...+.. .+.++ ....+.+||+||... ...+... .+++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG--~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier 236 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLG--VVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIER 236 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEE--EEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence 78899999999999999999765321 12 123332222 22232 135689999999632 1122222 3556
Q ss_pred CCEEEEEEeCCCh---hhHHHHHHHHHHHHhhCC---CceEEE-EEcCCCCCccchhhhhhhcCCCCceEEeeccc
Q psy1417 114 THGVIVVYDVTSG---ETFANVKRWLHEIENNCE---VVNRIL-GLRLGLNQRSIDEVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 114 ~~~vilv~d~~~~---~s~~~~~~~~~~i~~~~~---~~pilv-gnK~Dl~~~~i~~~~~~~~~~~~~~~e~~~~~ 182 (188)
++++++|+|+++. +.++....|..++..+.+ +.|++| +||+|+....-..++++...+ ...+.+|+.+
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~-~~i~~iSA~t 311 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG-PKVFPISALT 311 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC-CcEEEEeCCC
Confidence 9999999999864 678888888888887543 578777 999998433222234444444 3466666554
No 171
>KOG1707|consensus
Probab=99.63 E-value=6.1e-16 Score=129.39 Aligned_cols=113 Identities=21% Similarity=0.261 Sum_probs=88.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
++|+++|+.||||||||-.+....|++...+-...-...... .-..+...+.|++..+..+.....-++.+|++.+||
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadv--tPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvy 87 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADV--TPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVY 87 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCcc--CcCcCceEEEecccccchhHHHHHHHhhcCEEEEEE
Confidence 399999999999999999999998887654432211111111 223355889999866665555566789999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhC---CCceEEE-EEcCCC
Q psy1417 122 DVTSGETFANVK-RWLHEIENNC---EVVNRIL-GLRLGL 156 (188)
Q Consensus 122 d~~~~~s~~~~~-~~~~~i~~~~---~~~pilv-gnK~Dl 156 (188)
+++++.+++.+. .|++.+++.+ .++|||+ |||+|.
T Consensus 88 avd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~ 127 (625)
T KOG1707|consen 88 AVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDN 127 (625)
T ss_pred ecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCC
Confidence 999999999996 7999999977 6799988 999998
No 172
>PRK11058 GTPase HflX; Provisional
Probab=99.63 E-value=6.6e-15 Score=122.88 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=76.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccc--cccch------hccccC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERF--RTITS------TYYRGT 114 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~--~~~~~------~~~~~~ 114 (188)
+|+++|.+|||||||+|+|.+.+......+....+.....+.+.+. ..+.+|||+|..+. ...+. ..++.+
T Consensus 199 ~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 199 TVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 8999999999999999999876543222222222333344545442 25789999997331 11111 235789
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhh-CCCceEEE-EEcCCCC
Q psy1417 115 HGVIVVYDVTSGETFANVKRWLHEIENN-CEVVNRIL-GLRLGLN 157 (188)
Q Consensus 115 ~~vilv~d~~~~~s~~~~~~~~~~i~~~-~~~~pilv-gnK~Dl~ 157 (188)
|++++|+|++++.+++.+..|...+... ..++|+++ +||+|+.
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC
Confidence 9999999999988888776554444442 23578776 9999984
No 173
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.63 E-value=3.2e-15 Score=114.23 Aligned_cols=111 Identities=23% Similarity=0.261 Sum_probs=77.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCc-----------------cceeeeeeEEEEEE--e---CCeEEEEEEEeCCCc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSY-----------------ITTIGVDFKIRTID--V---NGEKVKLQIWDTAGQ 100 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~--~---~~~~~~l~l~D~~g~ 100 (188)
+|+++|+.++|||||+.+|+........ ....|..+....+. + ++..+.+++|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 7899999999999999999865432210 01112222212221 1 356789999999999
Q ss_pred ccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 101 ERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 101 ~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
..|......++..+|++++|+|+++..++.. ..|+...... +.|+++ +||+|+
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~~--~~p~iiviNK~D~ 135 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAILE--GLPIVLVINKIDR 135 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc--CCCEEEEEECccc
Confidence 9988777788999999999999988766543 3444444332 377766 999996
No 174
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.62 E-value=4.1e-15 Score=110.50 Aligned_cols=110 Identities=19% Similarity=0.147 Sum_probs=77.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccce----------------eeeeeEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITT----------------IGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTI 106 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t----------------~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~ 106 (188)
+|+++|..|+|||||++.+.+........+. .........+... ...+.+||+||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 5899999999999999999977655433111 1112222223333 467999999999888877
Q ss_pred chhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 107 TSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 107 ~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
+..+++.+|++++|+|+++..+... ..++..+.. .+.|+++ +||+|+.
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~--~~~~i~iv~nK~D~~ 127 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE--GGLPIIVAINKIDRV 127 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH--CCCCeEEEEECCCCc
Confidence 8888999999999999987654432 234444443 4578777 9999983
No 175
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.62 E-value=2.7e-15 Score=112.74 Aligned_cols=113 Identities=19% Similarity=0.171 Sum_probs=71.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC----CCCCCc-----cceeeeeeEEEEEE----------eCCeEEEEEEEeCCCccc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDN----TFSGSY-----ITTIGVDFKIRTID----------VNGEKVKLQIWDTAGQER 102 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~----~~~~~~-----~~t~~~~~~~~~~~----------~~~~~~~l~l~D~~g~~~ 102 (188)
+||+++|+.++|||||+++|... .+...+ ..|++..+....+. ..+..+.+++||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 38999999999999999999862 121111 23444443333332 123357899999999876
Q ss_pred ccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 103 FRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 103 ~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
+..........+|++++|+|+++.........|. +.... +.|+++ +||+|+.
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~-~~~~iiv~NK~Dl~ 133 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL-CKKLIVVLNKIDLI 133 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc-CCCEEEEEECcccC
Confidence 5333323456689999999998754444333332 11222 457666 9999983
No 176
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.62 E-value=2e-15 Score=110.24 Aligned_cols=122 Identities=20% Similarity=0.185 Sum_probs=76.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccc----ccccchhccccCCEEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER----FRTITSTYYRGTHGVI 118 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----~~~~~~~~~~~~~~vi 118 (188)
||+++|.+++|||||++++.+. +.. ..++.+. .++.. .+||+||... +.......++.+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~-~~~-~~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGN-YTL-ARKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCC-Ccc-CccceEE-------EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 7999999999999999997643 221 1233222 22222 2699999632 2111122368899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCccchh-hhhhhcCCC-CceEEeeccc
Q psy1417 119 VVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSIDE-VNLCHRGSV-DGSVESTSVD 182 (188)
Q Consensus 119 lv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~~-~~~~~~~~~-~~~~e~~~~~ 182 (188)
+|+|+++.+++ +..|+..+ ..+.|+++ +||+|+.....+. .+++.+.+. ..++++|..+
T Consensus 70 ~v~d~~~~~s~--~~~~~~~~---~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~ 131 (158)
T PRK15467 70 YVHGANDPESR--LPAGLLDI---GVSKRQIAVISKTDMPDADVAATRKLLLETGFEEPIFELNSHD 131 (158)
T ss_pred EEEeCCCcccc--cCHHHHhc---cCCCCeEEEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCC
Confidence 99999988765 33454443 23567666 9999995433222 245555555 3677777654
No 177
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.61 E-value=9.1e-15 Score=109.76 Aligned_cols=106 Identities=22% Similarity=0.303 Sum_probs=70.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCc----------ccccccchhccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQ----------ERFRTITSTYYR 112 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~----------~~~~~~~~~~~~ 112 (188)
+|+++|++|||||||++++.+..+...+.++.+.......... ...+.+||+||. +.+......+++
T Consensus 26 ~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 102 (196)
T PRK00454 26 EIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLR 102 (196)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999987666666666664443332222 257999999994 233333344444
Q ss_pred c---CCEEEEEEeCCChhhHHH--HHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 113 G---THGVIVVYDVTSGETFAN--VKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 113 ~---~~~vilv~d~~~~~s~~~--~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
. .+++++|+|.++..+... +..|+ .. .+.|+++ +||+|+
T Consensus 103 ~~~~~~~~~~v~d~~~~~~~~~~~i~~~l---~~--~~~~~iiv~nK~Dl 147 (196)
T PRK00454 103 TRENLKGVVLLIDSRHPLKELDLQMIEWL---KE--YGIPVLIVLTKADK 147 (196)
T ss_pred hCccceEEEEEEecCCCCCHHHHHHHHHH---HH--cCCcEEEEEECccc
Confidence 4 367888899877544332 22333 22 2477666 999998
No 178
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.60 E-value=1e-14 Score=126.08 Aligned_cols=106 Identities=15% Similarity=0.170 Sum_probs=80.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHh---CCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD---NTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIV 119 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vil 119 (188)
.|+++|..++|||||+++|.+ +.+++++.+++..+.....+..++ ..+.+||+||++.|.......+.++|++++
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aIL 79 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAALL 79 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEEE
Confidence 789999999999999999985 345555555555555555666665 779999999999988777777889999999
Q ss_pred EEeCCC---hhhHHHHHHHHHHHHhhCCCce-EEE-EEcCCC
Q psy1417 120 VYDVTS---GETFANVKRWLHEIENNCEVVN-RIL-GLRLGL 156 (188)
Q Consensus 120 v~d~~~---~~s~~~~~~~~~~i~~~~~~~p-ilv-gnK~Dl 156 (188)
|+|+++ +++++.+. + +... ++| ++| +||+|+
T Consensus 80 VVDa~~G~~~qT~ehl~-i---l~~l--gi~~iIVVlNK~Dl 115 (581)
T TIGR00475 80 VVDADEGVMTQTGEHLA-V---LDLL--GIPHTIVVITKADR 115 (581)
T ss_pred EEECCCCCcHHHHHHHH-H---HHHc--CCCeEEEEEECCCC
Confidence 999998 45554442 2 2222 355 665 999998
No 179
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.60 E-value=2.2e-14 Score=120.28 Aligned_cols=131 Identities=18% Similarity=0.184 Sum_probs=83.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCC-CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcc--------cccccchhcccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFS-GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQE--------RFRTITSTYYRG 113 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~--------~~~~~~~~~~~~ 113 (188)
+|+++|.+|||||||+++|.+.... ....+....+.....+.+++ ..+.+|||||.. .+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999976531 11123333334444555555 459999999953 333445556789
Q ss_pred CCEEEEEEeCCChhhHHH--HHHHHHHHHhhCCCceEEE-EEcCCCCCccchhhhhhhcCCCCceEEeecc
Q psy1417 114 THGVIVVYDVTSGETFAN--VKRWLHEIENNCEVVNRIL-GLRLGLNQRSIDEVNLCHRGSVDGSVESTSV 181 (188)
Q Consensus 114 ~~~vilv~d~~~~~s~~~--~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~~~~~~~~~~~~~~~e~~~~ 181 (188)
+|++++|+|..+..+... +..|+. +. +.|+++ +||+|+....... ......+....+++|..
T Consensus 79 ad~vl~vvD~~~~~~~~d~~i~~~l~---~~--~~piilVvNK~D~~~~~~~~-~~~~~lg~~~~~~vSa~ 143 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDEEIAKWLR---KS--GKPVILVANKIDGKKEDAVA-AEFYSLGFGEPIPISAE 143 (429)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHH---Hh--CCCEEEEEECccCCcccccH-HHHHhcCCCCeEEEeCC
Confidence 999999999987544332 334443 32 477777 9999984322222 22345566667776654
No 180
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.59 E-value=1.8e-14 Score=124.87 Aligned_cols=137 Identities=20% Similarity=0.245 Sum_probs=91.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC--CCC-----Cc------cceeeeeeEEEE--EEe---CCeEEEEEEEeCCCccccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT--FSG-----SY------ITTIGVDFKIRT--IDV---NGEKVKLQIWDTAGQERFR 104 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~--~~~-----~~------~~t~~~~~~~~~--~~~---~~~~~~l~l~D~~g~~~~~ 104 (188)
||+++|+.++|||||+.+|+... +.. .+ ..+.|.++.... +.+ ++..+.+++|||||+..|.
T Consensus 9 Ni~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~ 88 (600)
T PRK05433 9 NFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFS 88 (600)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHH
Confidence 89999999999999999998531 110 11 011233332222 222 5567899999999999998
Q ss_pred ccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCccchh--hhhhhcCCCC--ceEEee
Q psy1417 105 TITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSIDE--VNLCHRGSVD--GSVEST 179 (188)
Q Consensus 105 ~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~~--~~~~~~~~~~--~~~e~~ 179 (188)
..+..+++.+|++++|+|+++....+....|..... .++|+++ +||+|+.....+. .++....+.. ..+.+|
T Consensus 89 ~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~iS 165 (600)
T PRK05433 89 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVLVS 165 (600)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEEEe
Confidence 888889999999999999998776666666654432 2467766 9999985332221 2343333332 245555
Q ss_pred ccc
Q psy1417 180 SVD 182 (188)
Q Consensus 180 ~~~ 182 (188)
..+
T Consensus 166 Akt 168 (600)
T PRK05433 166 AKT 168 (600)
T ss_pred cCC
Confidence 443
No 181
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.59 E-value=3.7e-14 Score=103.63 Aligned_cols=110 Identities=23% Similarity=0.169 Sum_probs=71.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCC-CccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccc----------c-chhc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSG-SYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT----------I-TSTY 110 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~----------~-~~~~ 110 (188)
+|+++|++|+|||||++++.+..... ...+....+.....+..++. .+.+||++|...... . ....
T Consensus 4 ~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 4 RIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 99999999999999999998765321 11222222222334445553 478999999644311 1 1124
Q ss_pred cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 111 ~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
+..+|++++|+|+++..+..... ++..+... +.|+++ +||+|+.
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~~--~~~~iiv~nK~Dl~ 126 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLR-IAGLILEE--GKALVIVVNKWDLV 126 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHH-HHHHHHhc--CCCEEEEEeccccC
Confidence 56899999999999887765543 33333322 467766 9999983
No 182
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.59 E-value=9.6e-15 Score=113.33 Aligned_cols=113 Identities=15% Similarity=0.154 Sum_probs=78.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCC--------C-----Ccc---ceeeeeeEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFS--------G-----SYI---TTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTI 106 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~--------~-----~~~---~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~ 106 (188)
+|+++|..|+|||||+++|+...-. . ++. ...+..+......++...+++++|||||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999853110 0 000 11122222223333334578999999999999888
Q ss_pred chhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC
Q psy1417 107 TSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 107 ~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~ 158 (188)
...+++.+|++++|+|+++.... ....|+..+.+. ++|+++ +||+|+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~--~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL--NIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc--CCCEEEEEECccccC
Confidence 88899999999999999986543 234455555543 478777 99999853
No 183
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.59 E-value=3.2e-14 Score=103.05 Aligned_cols=135 Identities=16% Similarity=0.115 Sum_probs=78.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccc--------cchhcccc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT--------ITSTYYRG 113 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~--------~~~~~~~~ 113 (188)
.+|+++|.+|+|||||++++.+................... ........+.+||+||...... .....+..
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRG-IYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEE-EEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 38999999999999999999876532111110011111111 1223346789999999654322 22334778
Q ss_pred CCEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCCC-Cc-cchh--hhhhhcCCCCceEEeecc
Q psy1417 114 THGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGLN-QR-SIDE--VNLCHRGSVDGSVESTSV 181 (188)
Q Consensus 114 ~~~vilv~d~~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl~-~~-~i~~--~~~~~~~~~~~~~e~~~~ 181 (188)
+|++++|+|.++.. .... .+...+... +.|+++ +||+|+. .. .+.+ ..+....+....++++++
T Consensus 83 ~d~i~~v~d~~~~~--~~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 152 (168)
T cd04163 83 VDLVLFVVDASEPI--GEGDEFILELLKKS--KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISAL 152 (168)
T ss_pred CCEEEEEEECCCcc--CchHHHHHHHHHHh--CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEec
Confidence 99999999999862 2222 233333332 366666 9999984 22 2221 134444444566766654
No 184
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.58 E-value=2.9e-15 Score=115.25 Aligned_cols=111 Identities=18% Similarity=0.241 Sum_probs=75.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCc---cceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccc-----cchhccccC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSY---ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT-----ITSTYYRGT 114 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-----~~~~~~~~~ 114 (188)
||+++|+.++||||+.+.+..+-.+.+. .+|...+.. .+. ....+.+++||+||+..+.. .....++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~--~v~-~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKS--HVR-FLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEE--EEE-CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEE--EEe-cCCCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence 7999999999999999999866544332 134332222 221 22346799999999976543 356778999
Q ss_pred CEEEEEEeCCChh---hHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 115 HGVIVVYDVTSGE---TFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 115 ~~vilv~d~~~~~---s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
.++|+|+|+.+.+ .+..+...+..+.+..|++.+-| .+|.|+
T Consensus 78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~ 123 (232)
T PF04670_consen 78 GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDL 123 (232)
T ss_dssp SEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCC
T ss_pred CEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeeccc
Confidence 9999999999543 45555678888888999999888 999998
No 185
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.58 E-value=3e-14 Score=125.96 Aligned_cols=116 Identities=18% Similarity=0.174 Sum_probs=83.1
Q ss_pred CCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCC
Q psy1417 36 PTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTH 115 (188)
Q Consensus 36 ~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~ 115 (188)
..+.. .|+++|..++|||||+++|....+.......+........+.+++ ..++||||||++.|..++...+..+|
T Consensus 287 ~~R~p--vV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aD 362 (787)
T PRK05306 287 VPRPP--VVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTD 362 (787)
T ss_pred ccCCC--EEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCC
Confidence 45556 999999999999999999987776554433333333334455555 56899999999999988888899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC
Q psy1417 116 GVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 116 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~ 158 (188)
++++|||+++...-+....| ..+. ..++|++| +||+|+..
T Consensus 363 iaILVVdAddGv~~qT~e~i-~~a~--~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 363 IVVLVVAADDGVMPQTIEAI-NHAK--AAGVPIIVAINKIDKPG 403 (787)
T ss_pred EEEEEEECCCCCCHhHHHHH-HHHH--hcCCcEEEEEECccccc
Confidence 99999999874322222222 1122 23478877 99999954
No 186
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.57 E-value=8e-14 Score=123.40 Aligned_cols=133 Identities=15% Similarity=0.129 Sum_probs=83.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCC-CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccc--------ccccchhcccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFS-GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER--------FRTITSTYYRG 113 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~--------~~~~~~~~~~~ 113 (188)
+|+++|.++||||||+++|.+.... ....+.+..+.......+++ ..+.+|||+|.+. +......+++.
T Consensus 277 ~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 354 (712)
T PRK09518 277 VVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIAVSL 354 (712)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHHHHh
Confidence 8999999999999999999976531 12223333333333444444 4688999999653 22333456789
Q ss_pred CCEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCCCCccchhhhhhhcCCCCceEEeeccc
Q psy1417 114 THGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGLNQRSIDEVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 114 ~~~vilv~d~~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~~~~~~~~~~~~~~~e~~~~~ 182 (188)
+|++++|+|+++.-. ... .|...+++ .+.|+++ +||+|+.+......++ ...+....+.+|..+
T Consensus 355 aD~iL~VvDa~~~~~--~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~~~~~~~-~~lg~~~~~~iSA~~ 420 (712)
T PRK09518 355 ADAVVFVVDGQVGLT--STDERIVRMLRR--AGKPVVLAVNKIDDQASEYDAAEF-WKLGLGEPYPISAMH 420 (712)
T ss_pred CCEEEEEEECCCCCC--HHHHHHHHHHHh--cCCCEEEEEECcccccchhhHHHH-HHcCCCCeEEEECCC
Confidence 999999999986422 222 45555544 3578877 9999984322111222 233555566666543
No 187
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.57 E-value=2.6e-14 Score=112.69 Aligned_cols=113 Identities=13% Similarity=0.155 Sum_probs=75.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC-CCC----------------Cccc---eeeeeeEEEEEEeCCeEEEEEEEeCCCccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT-FSG----------------SYIT---TIGVDFKIRTIDVNGEKVKLQIWDTAGQER 102 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~-~~~----------------~~~~---t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~ 102 (188)
+|+++|..|+|||||+++|+... ... ++.+ .-+..+......++...+++++|||||+.+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 89999999999999999998421 000 0000 012222333334444558899999999998
Q ss_pred ccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC
Q psy1417 103 FRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 103 ~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~ 158 (188)
|.......++.+|++++|+|+++..... ...++..... .++|+++ +||+|+..
T Consensus 84 f~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~--~~~P~iivvNK~D~~~ 137 (267)
T cd04169 84 FSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL--RGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh--cCCCEEEEEECCccCC
Confidence 8776667789999999999998754322 2333333332 3478777 99999843
No 188
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.57 E-value=2e-14 Score=126.21 Aligned_cols=119 Identities=18% Similarity=0.157 Sum_probs=83.9
Q ss_pred CCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceee--eeeEEEEEEeCCeEEEEEEEeCCCcccccccchhcccc
Q psy1417 36 PTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIG--VDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG 113 (188)
Q Consensus 36 ~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ 113 (188)
..+.. +|+++|..++|||||+++|....+.....+++. .......+..++....+.+|||||++.|..++...+..
T Consensus 241 ~~r~p--~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~ 318 (742)
T CHL00189 241 INRPP--IVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANV 318 (742)
T ss_pred cccCC--EEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHH
Confidence 34556 999999999999999999987766544333222 22222334444556889999999999999999889999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCc
Q psy1417 114 THGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQR 159 (188)
Q Consensus 114 ~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~ 159 (188)
+|++++|+|+++....+....| ..+. ..++|++| +||+|+...
T Consensus 319 aDiaILVVDA~dGv~~QT~E~I-~~~k--~~~iPiIVViNKiDl~~~ 362 (742)
T CHL00189 319 TDIAILIIAADDGVKPQTIEAI-NYIQ--AANVPIIVAINKIDKANA 362 (742)
T ss_pred CCEEEEEEECcCCCChhhHHHH-HHHH--hcCceEEEEEECCCcccc
Confidence 9999999999874322222222 1222 23488887 999999543
No 189
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.56 E-value=8.4e-14 Score=116.74 Aligned_cols=110 Identities=24% Similarity=0.167 Sum_probs=74.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCC-CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccc-----------hhc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFS-GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTIT-----------STY 110 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~-----------~~~ 110 (188)
|++++|.+++|||||+++|++.... ....+....+.....+..++. .+.+|||+|..++.... ..+
T Consensus 174 ~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~ 251 (429)
T TIGR03594 174 KIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKA 251 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHHHHH
Confidence 9999999999999999999976522 111222222233344445553 68999999975443221 235
Q ss_pred cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 111 ~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
++.+|++++|+|+++..+.+... ++..+.+. +.|+++ +||+|+.
T Consensus 252 ~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~~--~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 252 IERADVVLLVLDATEGITEQDLR-IAGLILEA--GKALVIVVNKWDLV 296 (429)
T ss_pred HHhCCEEEEEEECCCCccHHHHH-HHHHHHHc--CCcEEEEEECcccC
Confidence 78899999999999887766653 33333333 477777 9999984
No 190
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.56 E-value=3.4e-14 Score=102.99 Aligned_cols=125 Identities=17% Similarity=0.147 Sum_probs=79.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccc------ccchhcc--cc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR------TITSTYY--RG 113 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~------~~~~~~~--~~ 113 (188)
++|+++|.++||||||+|+|.+.+......|....+...-.+.+.+ ..+.+.|+||-.... .....++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 3899999999999999999998764333334444445555666666 568999999943322 1112222 57
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC---CCccchhhhhhhcCCCC
Q psy1417 114 THGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL---NQRSIDEVNLCHRGSVD 173 (188)
Q Consensus 114 ~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl---~~~~i~~~~~~~~~~~~ 173 (188)
.|+++.|+|+++.+.-. ....++.+.. +|+++ .||+|+ ....++..++.+..+..
T Consensus 79 ~D~ii~VvDa~~l~r~l---~l~~ql~e~g--~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~p 137 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNL---YLTLQLLELG--IPVVVVLNKMDEAERKGIEIDAEKLSERLGVP 137 (156)
T ss_dssp SSEEEEEEEGGGHHHHH---HHHHHHHHTT--SSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-
T ss_pred CCEEEEECCCCCHHHHH---HHHHHHHHcC--CCEEEEEeCHHHHHHcCCEECHHHHHHHhCCC
Confidence 89999999998754322 3334444433 88887 999998 34456666777776664
No 191
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.56 E-value=2.3e-14 Score=110.07 Aligned_cols=111 Identities=17% Similarity=0.178 Sum_probs=75.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCC--CCC--------------ccceeeeeeEEEEEEeC--------CeEEEEEEEeCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTF--SGS--------------YITTIGVDFKIRTIDVN--------GEKVKLQIWDTA 98 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~--~~~--------------~~~t~~~~~~~~~~~~~--------~~~~~l~l~D~~ 98 (188)
+|+++|..++|||||+.+|+...- ... ....+........+.++ +..+.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 789999999999999999984321 100 00001111111122222 447889999999
Q ss_pred CcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 99 GQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 99 g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
|+..|......+++.+|++++|||+.+..+.+....|.. ... .++|+++ +||+|+
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~-~~~--~~~p~ilviNKiD~ 137 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQ-ALK--ERVKPVLVINKIDR 137 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHH-HHH--cCCCEEEEEECCCc
Confidence 999998888889999999999999998766655333332 222 2356666 999997
No 192
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.56 E-value=4.4e-14 Score=111.93 Aligned_cols=112 Identities=19% Similarity=0.211 Sum_probs=73.5
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCCCCCC----------ccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccc-------
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGS----------YITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERF------- 103 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~------- 103 (188)
.+||+++|++|+|||||+++|++..+... ..+|++.......+..+|..+.+++|||||-...
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 45999999999999999999998775443 3456666666666777788899999999993221
Q ss_pred -------------------cccchhccc--cCCEEEEEEeCCChhhHHHH-HHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 104 -------------------RTITSTYYR--GTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 104 -------------------~~~~~~~~~--~~~~vilv~d~~~~~s~~~~-~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
...+...+. ++|+++++++.+.. .+... ...+..+. ..+|+++ +||+|+
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~~v~vi~VinK~D~ 155 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---KRVNIIPVIAKADT 155 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---ccCCEEEEEECCCc
Confidence 111212333 35677777776542 12222 22333333 2477766 999998
No 193
>KOG0072|consensus
Probab=99.55 E-value=7.6e-15 Score=102.82 Aligned_cols=115 Identities=23% Similarity=0.342 Sum_probs=89.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
+|+++|..|+|||+++.++.-++. ....||+|. ++..+++.+ .++++||.+|+-..+++|+.||.+.+++|+|+|
T Consensus 20 rililgldGaGkttIlyrlqvgev-vttkPtigf--nve~v~yKN--Lk~~vwdLggqtSirPyWRcYy~dt~avIyVVD 94 (182)
T KOG0072|consen 20 RILILGLDGAGKTTILYRLQVGEV-VTTKPTIGF--NVETVPYKN--LKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVD 94 (182)
T ss_pred EEEEeeccCCCeeEEEEEcccCcc-cccCCCCCc--Ccccccccc--ccceeeEccCcccccHHHHHHhcccceEEEEEe
Confidence 899999999999999999986663 356788884 444555544 779999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHh--hCCCceEEE-EEcCCCCCccch
Q psy1417 123 VTSGETFANVKRWLHEIEN--NCEVVNRIL-GLRLGLNQRSID 162 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~--~~~~~pilv-gnK~Dl~~~~i~ 162 (188)
.++.+........+..+.+ ......++| +||.|.+.+...
T Consensus 95 ssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~ 137 (182)
T KOG0072|consen 95 SSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTR 137 (182)
T ss_pred ccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhH
Confidence 9998877776654444333 223456666 999999554433
No 194
>PRK10218 GTP-binding protein; Provisional
Probab=99.55 E-value=8.2e-14 Score=120.58 Aligned_cols=113 Identities=15% Similarity=0.163 Sum_probs=82.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHh--CCCCCCc------------cceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccch
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD--NTFSGSY------------ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITS 108 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~ 108 (188)
||+++|..++|||||+.+|+. +.+...+ ..+.|.++......++...+++++|||||+..|...+.
T Consensus 7 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~ 86 (607)
T PRK10218 7 NIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVE 86 (607)
T ss_pred EEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHH
Confidence 999999999999999999986 3333221 13445555555555555668899999999999998889
Q ss_pred hccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC
Q psy1417 109 TYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 109 ~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~ 158 (188)
.+++.+|++++|+|+++....+.. .++..+... ++|+++ .||+|+..
T Consensus 87 ~~l~~aDg~ILVVDa~~G~~~qt~-~~l~~a~~~--gip~IVviNKiD~~~ 134 (607)
T PRK10218 87 RVMSMVDSVLLVVDAFDGPMPQTR-FVTKKAFAY--GLKPIVVINKVDRPG 134 (607)
T ss_pred HHHHhCCEEEEEEecccCccHHHH-HHHHHHHHc--CCCEEEEEECcCCCC
Confidence 999999999999999876433332 233333332 366666 99999843
No 195
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.54 E-value=1.5e-13 Score=98.35 Aligned_cols=107 Identities=16% Similarity=0.104 Sum_probs=70.9
Q ss_pred EEeCCCCCHHHHHHHHHhCCCC-CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccc-------hhccccCCEE
Q psy1417 46 FLQLVGVGKSSLLIRFSDNTFS-GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTIT-------STYYRGTHGV 117 (188)
Q Consensus 46 vvG~~~~GKssLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~-------~~~~~~~~~v 117 (188)
++|..|+|||||++++.+.... ....+.............. ....+.+||++|........ ..++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999866443 1112211112222222222 14579999999976654333 3467889999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 118 IVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 118 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
++|+|.++..+..... |...... .+.|+++ +||+|+
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~--~~~~~ivv~nK~D~ 116 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE--RGKPVLLVLNKIDL 116 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh--cCCeEEEEEEcccc
Confidence 9999999987766665 3333332 3577777 999998
No 196
>PRK00089 era GTPase Era; Reviewed
Probab=99.53 E-value=9.5e-14 Score=110.88 Aligned_cols=134 Identities=16% Similarity=0.132 Sum_probs=76.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCC-ccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccc--------ccchhcccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGS-YITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR--------TITSTYYRG 113 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~--------~~~~~~~~~ 113 (188)
.|+++|++|||||||+++|++.+.... ..+... ......+... ....+.+|||||..... ......+..
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt-~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~ 84 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTT-RHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKD 84 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcc-cccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhc
Confidence 789999999999999999997764221 111111 1111122111 23679999999964322 122335678
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC-C-ccchh--hhhhhcCCCCceEEeecc
Q psy1417 114 THGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN-Q-RSIDE--VNLCHRGSVDGSVESTSV 181 (188)
Q Consensus 114 ~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~-~-~~i~~--~~~~~~~~~~~~~e~~~~ 181 (188)
+|++++|+|+++. +.....++....+. .+.|+++ +||+|+. . ..+.. ..+....+....+.+|..
T Consensus 85 ~D~il~vvd~~~~--~~~~~~~i~~~l~~-~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~ 154 (292)
T PRK00089 85 VDLVLFVVDADEK--IGPGDEFILEKLKK-VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISAL 154 (292)
T ss_pred CCEEEEEEeCCCC--CChhHHHHHHHHhh-cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCC
Confidence 9999999999883 22222222222221 2467776 9999984 3 22221 133333444555666543
No 197
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.53 E-value=7.1e-14 Score=120.61 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=76.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCC----ccceeeeeeEEEEEE------------eCCeEEEEEEEeCCCccccccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGS----YITTIGVDFKIRTID------------VNGEKVKLQIWDTAGQERFRTI 106 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~----~~~t~~~~~~~~~~~------------~~~~~~~l~l~D~~g~~~~~~~ 106 (188)
-|+++|+.++|||||+++|.+..+... ..+++|..+...... ++.....+.+|||||++.|..+
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l 85 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL 85 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence 689999999999999999997766433 233344333211110 0001123889999999999988
Q ss_pred chhccccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 107 TSTYYRGTHGVIVVYDVTS---GETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 107 ~~~~~~~~~~vilv~d~~~---~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
+..+++.+|++++|||+++ +++++.+..+ .. .++|+++ +||+|+.
T Consensus 86 ~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~--~~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 86 RKRGGALADLAILIVDINEGFKPQTQEALNIL----RM--YKTPFVVAANKIDRI 134 (590)
T ss_pred HHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH--cCCCEEEEEECCCcc
Confidence 8888999999999999987 4555554322 22 2478777 9999983
No 198
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.53 E-value=1.5e-14 Score=107.06 Aligned_cols=110 Identities=19% Similarity=0.327 Sum_probs=71.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEe-CCeEEEEEEEeCCCcccccccchh---ccccCCEEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDV-NGEKVKLQIWDTAGQERFRTITST---YYRGTHGVI 118 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~~~~~~~~---~~~~~~~vi 118 (188)
.|+++|+.|+|||+|..+|..+...+.+.+. ..+. ...+ +...-.+.+.|+||+++.+..... +...+.++|
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 6899999999999999999998665544333 2111 1222 122345889999999988754433 477899999
Q ss_pred EEEeCCC-hhhHHHHHHHHHHHHhhC----CCceEEE-EEcCCC
Q psy1417 119 VVYDVTS-GETFANVKRWLHEIENNC----EVVNRIL-GLRLGL 156 (188)
Q Consensus 119 lv~d~~~-~~s~~~~~~~~~~i~~~~----~~~pilv-gnK~Dl 156 (188)
+|+|.+. ...+..+.+++..+.... ..+||+| +||+|+
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl 124 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDL 124 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTS
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccc
Confidence 9999874 456777776666665422 4589999 999998
No 199
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.53 E-value=1.3e-13 Score=116.43 Aligned_cols=112 Identities=13% Similarity=0.162 Sum_probs=73.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCC-Cc-cceeeeeeEEEEEEeCCeEEEEEEEeCCCccc----ccc---cchhccc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSG-SY-ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER----FRT---ITSTYYR 112 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~-~~-~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----~~~---~~~~~~~ 112 (188)
.+|++||.++||||||+++|.+.+... .| .+|... ..-.+.+.+ ..+.+||+||... ... ..-..++
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P--~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVP--NLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccc--eEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 378899999999999999998764322 22 123322 222333444 5799999999521 111 1122467
Q ss_pred cCCEEEEEEeCCC----hhhHHHHHHHHHHHHhhC------------CCceEEE-EEcCCCC
Q psy1417 113 GTHGVIVVYDVTS----GETFANVKRWLHEIENNC------------EVVNRIL-GLRLGLN 157 (188)
Q Consensus 113 ~~~~vilv~d~~~----~~s~~~~~~~~~~i~~~~------------~~~pilv-gnK~Dl~ 157 (188)
+++++++|+|+++ ++.++.+..|..++.++. ...|++| +||+|+.
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~ 297 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVP 297 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccch
Confidence 8999999999985 345666666666665533 2478777 9999994
No 200
>KOG0077|consensus
Probab=99.52 E-value=2e-14 Score=102.99 Aligned_cols=110 Identities=22% Similarity=0.399 Sum_probs=89.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
|++++|.+++|||||++-|-+++ ...+.||...... .+.+.| .+++-+|.+|+..-+..|..|+-.+|++++.+|
T Consensus 22 KllFlGLDNAGKTTLLHMLKdDr-l~qhvPTlHPTSE--~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvd 96 (193)
T KOG0077|consen 22 KLLFLGLDNAGKTTLLHMLKDDR-LGQHVPTLHPTSE--ELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVD 96 (193)
T ss_pred eEEEEeecCCchhhHHHHHcccc-ccccCCCcCCChH--HheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEeeee
Confidence 89999999999999999886554 4456677654333 333444 779999999998888899999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCC
Q psy1417 123 VTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLN 157 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~ 157 (188)
+.+.+.|.+.+.-++.+... ..++|++| |||+|.+
T Consensus 97 a~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p 134 (193)
T KOG0077|consen 97 AYDQERFAESKKELDALLSDESLATVPFLILGNKIDIP 134 (193)
T ss_pred hhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCC
Confidence 99999999998776666653 36789888 9999984
No 201
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.52 E-value=1.7e-13 Score=99.46 Aligned_cols=106 Identities=22% Similarity=0.309 Sum_probs=70.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccc----------ccccchhccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER----------FRTITSTYYR 112 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----------~~~~~~~~~~ 112 (188)
+|+++|++|+|||||++.+.++.+.....++.+.+.....+..++ .+.+||++|... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 479999999999999999997666666666666544444443333 789999998432 2233333333
Q ss_pred ---cCCEEEEEEeCCChh--hHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 113 ---GTHGVIVVYDVTSGE--TFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 113 ---~~~~vilv~d~~~~~--s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
..+++++++|..+.. ....+..|+... ..|+++ +||+|+
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~ 122 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVVLTKADK 122 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEEEEchhc
Confidence 356889999987653 223344555443 267666 999998
No 202
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.51 E-value=1.1e-13 Score=119.78 Aligned_cols=113 Identities=17% Similarity=0.230 Sum_probs=80.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh--CCCCCCc------------cceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccch
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD--NTFSGSY------------ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITS 108 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~ 108 (188)
+|+++|..++|||||+.+|+. +.+.... ....|.++......++...+++++|||||+..|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 899999999999999999985 3332211 01123333333333333458899999999999988888
Q ss_pred hccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC
Q psy1417 109 TYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 109 ~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~ 158 (188)
.+++.+|++++|+|+.+.. ......|+..+... ++|++| +||+|+..
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~--~ip~IVviNKiD~~~ 130 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL--GLKPIVVINKIDRPS 130 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC--CCCEEEEEECCCCCC
Confidence 8999999999999998743 33445566666553 366666 99999843
No 203
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.51 E-value=8.3e-14 Score=99.02 Aligned_cols=120 Identities=17% Similarity=0.246 Sum_probs=83.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCc----ccccccchhccccCCEEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQ----ERFRTITSTYYRGTHGVI 118 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~----~~~~~~~~~~~~~~~~vi 118 (188)
||++||+.|||||||+++|.+... .|..|...+|.. .+.||||. ..|....-..-.++|+|+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~~------------~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYYD------------NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEecc------------cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 899999999999999999986543 444444433332 34599994 223333333346899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCCceEE-EEEcCCCC--Cccchhh-hhhhcCCCCceEEeeccc
Q psy1417 119 VVYDVTSGETFANVKRWLHEIENNCEVVNRI-LGLRLGLN--QRSIDEV-NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 119 lv~d~~~~~s~~~~~~~~~~i~~~~~~~pil-vgnK~Dl~--~~~i~~~-~~~~~~~~~~~~e~~~~~ 182 (188)
+|.|++++.+. +-+.+.+.+. .|++ |.||+|+. +..++.. ++-...|+...|+.|+++
T Consensus 69 ll~dat~~~~~-----~pP~fa~~f~-~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~ 130 (143)
T PF10662_consen 69 LLQDATEPRSV-----FPPGFASMFN-KPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVT 130 (143)
T ss_pred EEecCCCCCcc-----CCchhhcccC-CCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCC
Confidence 99999987664 4445555443 4554 69999996 5555544 667777888899998775
No 204
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.51 E-value=3e-13 Score=117.25 Aligned_cols=127 Identities=20% Similarity=0.185 Sum_probs=84.2
Q ss_pred eCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccccc------chhcc--ccCCEEEE
Q psy1417 48 QLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTI------TSTYY--RGTHGVIV 119 (188)
Q Consensus 48 G~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~------~~~~~--~~~~~vil 119 (188)
|++|||||||+|++.+.++...+.++...+.....+.+++ ..+++||+||+..+... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998776555556555555555666666 45799999998876543 22232 36899999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC-CCccc--hhhhhhhcCCCCceEEeeccc
Q psy1417 120 VYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL-NQRSI--DEVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 120 v~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl-~~~~i--~~~~~~~~~~~~~~~e~~~~~ 182 (188)
|+|.++.+. ...+..++.+ .++|+++ +||+|+ +++.+ +.+++++..+. ..++++.++
T Consensus 79 VvDat~ler---~l~l~~ql~~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~-pvv~tSA~t 139 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLLE--LGIPMILALNLVDEAEKKGIRIDEEKLEERLGV-PVVPTSATE 139 (591)
T ss_pred EecCCcchh---hHHHHHHHHh--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCC-CEEEEECCC
Confidence 999987432 2233334433 3478877 999998 33333 33456665553 456665443
No 205
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.51 E-value=2.9e-13 Score=111.87 Aligned_cols=112 Identities=17% Similarity=0.186 Sum_probs=75.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCC-c-cceeeeeeEEEEEEeCCeEEEEEEEeCCCccccc-------ccchhcccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGS-Y-ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR-------TITSTYYRG 113 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~-~-~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-------~~~~~~~~~ 113 (188)
.|.+||.++||||||++.|.+.+.... + ..|...... .+.+++ ...+.++|+||..+-. ...-..+++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~G--iv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLG--VVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEE--EEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 788999999999999999987653221 1 122222222 223322 2358999999964211 111124778
Q ss_pred CCEEEEEEeCC---ChhhHHHHHHHHHHHHhhC---CCceEEE-EEcCCCC
Q psy1417 114 THGVIVVYDVT---SGETFANVKRWLHEIENNC---EVVNRIL-GLRLGLN 157 (188)
Q Consensus 114 ~~~vilv~d~~---~~~s~~~~~~~~~~i~~~~---~~~pilv-gnK~Dl~ 157 (188)
++++++|+|++ +.+.++....|+.++.... .+.|++| +||+|+.
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 99999999988 4567788888888887754 3467766 9999983
No 206
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.50 E-value=1.9e-13 Score=121.01 Aligned_cols=109 Identities=17% Similarity=0.208 Sum_probs=75.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCC--CCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccc----------ccccc-hh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTF--SGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER----------FRTIT-ST 109 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----------~~~~~-~~ 109 (188)
||+++|.+|||||||+++|++.+. ...+ +....+.....+.+++.. +.+|||+|..+ +.... ..
T Consensus 452 kI~ivG~~nvGKSSLin~l~~~~~~~v~~~-~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 452 RVALVGRPNVGKSSLLNQLTHEERAVVNDL-AGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred EEEEECCCCCCHHHHHHHHhCccccccCCC-CCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 999999999999999999997763 2222 222234444555666654 67999999532 21111 23
Q ss_pred ccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 110 YYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 110 ~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
+++.+|++++|+|+++..+++...-| ..+.. .+.|+++ +||+|+.
T Consensus 529 ~i~~advvilViDat~~~s~~~~~i~-~~~~~--~~~piIiV~NK~DL~ 574 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLKVM-SMAVD--AGRALVLVFNKWDLM 574 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH--cCCCEEEEEEchhcC
Confidence 46889999999999998888776533 34433 2478777 9999983
No 207
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.49 E-value=1.8e-13 Score=114.72 Aligned_cols=114 Identities=16% Similarity=0.138 Sum_probs=74.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh--CCCCC-----------------------------CccceeeeeeEEEEEEeCCeEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSD--NTFSG-----------------------------SYITTIGVDFKIRTIDVNGEKV 90 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 90 (188)
++|+++|..++|||||+.+|+. +.... +....+..+.....+.. ..+
T Consensus 8 ~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~--~~~ 85 (426)
T TIGR00483 8 INVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET--DKY 85 (426)
T ss_pred eEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc--CCe
Confidence 4999999999999999999985 22110 11122333333334433 447
Q ss_pred EEEEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 91 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 91 ~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
.+.+||+||+++|.......+..+|++++|+|+++.+++...+ .+...+.+.....|++| +||+|+.
T Consensus 86 ~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~ 154 (426)
T TIGR00483 86 EVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSV 154 (426)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhcc
Confidence 8999999999888655555678899999999999875432111 11112233333456776 9999983
No 208
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.49 E-value=4.6e-13 Score=118.82 Aligned_cols=124 Identities=16% Similarity=0.115 Sum_probs=82.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccccc----------chhcc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTI----------TSTYY 111 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~----------~~~~~ 111 (188)
++|+++|.+|||||||+|++.+.+... .+..|.+...+...++....++.+||+||...+... ...++
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~v--gn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRV--GNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcc--CCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 389999999999999999998765432 233444444444444555577999999998766432 11222
Q ss_pred --ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC-Cccc--hhhhhhhcCCC
Q psy1417 112 --RGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN-QRSI--DEVNLCHRGSV 172 (188)
Q Consensus 112 --~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~-~~~i--~~~~~~~~~~~ 172 (188)
..+|++++|+|.++.+.. ..|..++.+. ++|+++ +||+|+. ++.+ +.+++.+..+.
T Consensus 82 ~~~~aD~vI~VvDat~ler~---l~l~~ql~e~--giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~ 143 (772)
T PRK09554 82 LSGDADLLINVVDASNLERN---LYLTLQLLEL--GIPCIVALNMLDIAEKQNIRIDIDALSARLGC 143 (772)
T ss_pred hccCCCEEEEEecCCcchhh---HHHHHHHHHc--CCCEEEEEEchhhhhccCcHHHHHHHHHHhCC
Confidence 478999999999885543 2344555443 378877 9999983 3333 33355555554
No 209
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.49 E-value=3.6e-13 Score=116.53 Aligned_cols=108 Identities=18% Similarity=0.186 Sum_probs=74.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCC----ccceeeeeeEEEEEE--eCCeEE----------EEEEEeCCCccccccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGS----YITTIGVDFKIRTID--VNGEKV----------KLQIWDTAGQERFRTI 106 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~----~~~t~~~~~~~~~~~--~~~~~~----------~l~l~D~~g~~~~~~~ 106 (188)
.|+++|+.++|||||+++|.+...... ..+++|..+...... ..+... .+++|||||++.|..+
T Consensus 8 ~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~~ 87 (586)
T PRK04004 8 IVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNL 87 (586)
T ss_pred EEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHHH
Confidence 799999999999999999975543222 223445333221110 001111 2789999999999888
Q ss_pred chhccccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 107 TSTYYRGTHGVIVVYDVTS---GETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 107 ~~~~~~~~~~vilv~d~~~---~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
+...+..+|++++|+|+++ +++++.+..+ .. .++|+++ +||+|+
T Consensus 88 ~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~~--~~vpiIvviNK~D~ 135 (586)
T PRK04004 88 RKRGGALADIAILVVDINEGFQPQTIEAINIL----KR--RKTPFVVAANKIDR 135 (586)
T ss_pred HHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----HH--cCCCEEEEEECcCC
Confidence 8888889999999999997 5666655432 22 2578777 999998
No 210
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.48 E-value=1.9e-13 Score=114.54 Aligned_cols=115 Identities=16% Similarity=0.117 Sum_probs=71.3
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCC--CC-----------------------------CCccceeeeeeEEEEEEeCCeE
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNT--FS-----------------------------GSYITTIGVDFKIRTIDVNGEK 89 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~ 89 (188)
+++|+++|..++|||||+++|+... .. ++..+ |.........++...
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~r--G~T~d~~~~~~~~~~ 83 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERER--GVTIDLAHKKFETDK 83 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhc--CccceeeeEEEecCC
Confidence 3499999999999999999998321 10 01111 222222222333445
Q ss_pred EEEEEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 90 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 90 ~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
+.+.+|||||++.|.......+..+|++++|+|+++...+.....+...+.......|++| +||+|+.
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~ 152 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAV 152 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccc
Confidence 7899999999988765444457789999999999873222222222222222222345665 9999984
No 211
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.48 E-value=3.5e-13 Score=102.60 Aligned_cols=111 Identities=19% Similarity=0.104 Sum_probs=68.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCC-CC------------------------------CccceeeeeeEEEEEEeCCeEEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTF-SG------------------------------SYITTIGVDFKIRTIDVNGEKVK 91 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~-~~------------------------------~~~~t~~~~~~~~~~~~~~~~~~ 91 (188)
||+++|..++|||||+++|+...- .. +..+.+..+.....+..++ ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 589999999999999999974321 11 0001111122222333333 56
Q ss_pred EEEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 92 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 92 l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
+.+|||||+++|.......++.+|++++|+|+++...-+.. .....+ +.....++++ +||+|+.
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~~~~-~~~~~~~iIvviNK~D~~ 143 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHSYIL-SLLGIRHVVVAVNKMDLV 143 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHHHHH-HHcCCCcEEEEEEchhcc
Confidence 88999999988765555668899999999999875322211 111222 2222244565 9999984
No 212
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.48 E-value=2.7e-13 Score=107.03 Aligned_cols=112 Identities=18% Similarity=0.226 Sum_probs=75.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCC--------c----------cceeeeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGS--------Y----------ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR 104 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~--------~----------~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~ 104 (188)
+|+++|..|+|||||+++++....... . ............+.++ .+.+++|||||...|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--GHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--CEEEEEEECcCHHHHH
Confidence 589999999999999999974321100 0 0011111222233344 3679999999998887
Q ss_pred ccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCc
Q psy1417 105 TITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQR 159 (188)
Q Consensus 105 ~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~ 159 (188)
.....+++.+|++++|+|+++.........|. .+... ++|+++ +||+|+...
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~~--~~p~iivvNK~D~~~~ 131 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADEA--GIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHHc--CCCEEEEEECCccCCC
Confidence 77778899999999999999876554444342 33332 477776 999998543
No 213
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.47 E-value=1.6e-12 Score=109.19 Aligned_cols=111 Identities=22% Similarity=0.136 Sum_probs=72.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCC-CCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccccc----------c-hh
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTF-SGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTI----------T-ST 109 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~----------~-~~ 109 (188)
++|+++|.+++|||||++++++... .....+....+.....+..++ ..+.+|||+|..+.... + ..
T Consensus 174 ~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 174 IKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 3999999999999999999986542 222222222223333444455 45789999995432211 1 23
Q ss_pred ccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 110 YYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 110 ~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
+++.+|++++|+|+++..+.+... ++..+.+. +.|+++ +||+|+.
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~--~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDLR-IAGLALEA--GRALVIVVNKWDLV 297 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHc--CCcEEEEEECccCC
Confidence 577899999999999887766553 23333332 367766 9999984
No 214
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.46 E-value=4.2e-13 Score=101.81 Aligned_cols=110 Identities=16% Similarity=0.132 Sum_probs=68.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCC---CCCcc--ceeeeeeEEEEEE-----------------------eC--C----e
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTF---SGSYI--TTIGVDFKIRTID-----------------------VN--G----E 88 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~---~~~~~--~t~~~~~~~~~~~-----------------------~~--~----~ 88 (188)
+|.++|..|+|||||+..+..... ..+.. -++...+...... .. + .
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 899999999999999999964311 11111 1111111110000 00 0 1
Q ss_pred EEEEEEEeCCCcccccccchhccccCCEEEEEEeCCCh----hhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 89 KVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSG----ETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 89 ~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~----~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
...+.+||+||++.|.......+..+|++++|+|++++ ++.+.+..| .. ....|++| +||+|+.
T Consensus 82 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~-~~~~~iiivvNK~Dl~ 150 (203)
T cd01888 82 VRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EI-MGLKHIIIVQNKIDLV 150 (203)
T ss_pred ccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HH-cCCCcEEEEEEchhcc
Confidence 26799999999998877666677889999999999863 333333322 21 12245665 9999983
No 215
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.46 E-value=2.4e-12 Score=99.72 Aligned_cols=89 Identities=22% Similarity=0.276 Sum_probs=58.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCC-Ccc-ceeeeeeEEEEEEeCCeEEEEEEEeCCCccccc-------ccchhcccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSG-SYI-TTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR-------TITSTYYRG 113 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~-~~~-~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-------~~~~~~~~~ 113 (188)
+++++|.+|+|||||+++|.+..... .+. +|.. .....+.+++ ..+++||+||..... .....++++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~--~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ 77 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLT--CVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVART 77 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCcccc--ceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhcc
Confidence 78999999999999999998765321 111 2222 2233444554 568999999974332 122346889
Q ss_pred CCEEEEEEeCCChh-hHHHHHHH
Q psy1417 114 THGVIVVYDVTSGE-TFANVKRW 135 (188)
Q Consensus 114 ~~~vilv~d~~~~~-s~~~~~~~ 135 (188)
+|++++|+|+++.+ ..+.+.+.
T Consensus 78 ad~il~V~D~t~~~~~~~~~~~~ 100 (233)
T cd01896 78 ADLILMVLDATKPEGHREILERE 100 (233)
T ss_pred CCEEEEEecCCcchhHHHHHHHH
Confidence 99999999998765 34433333
No 216
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.45 E-value=7.5e-13 Score=99.98 Aligned_cols=109 Identities=12% Similarity=0.132 Sum_probs=65.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeee-eeEEEEEEeC-CeEEEEEEEeCCCcccccccc-----hhccccC
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGV-DFKIRTIDVN-GEKVKLQIWDTAGQERFRTIT-----STYYRGT 114 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~-----~~~~~~~ 114 (188)
+||+++|++|+|||||++.+.+.....+...+.+. +.......+. .....+.+||++|........ ...+..+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~ 81 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSEY 81 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccCc
Confidence 49999999999999999999976554333333231 1110000111 112358999999965432222 2225678
Q ss_pred CEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 115 HGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 115 ~~vilv~d~~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
|+++++.+. .+.... .|+..+.+. ..|+++ +||+|+
T Consensus 82 d~~l~v~~~----~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~ 119 (197)
T cd04104 82 DFFIIISST----RFSSNDVKLAKAIQCM--GKKFYFVRTKVDR 119 (197)
T ss_pred CEEEEEeCC----CCCHHHHHHHHHHHHh--CCCEEEEEecccc
Confidence 888887432 244443 455656554 356665 999998
No 217
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.45 E-value=3.8e-13 Score=100.80 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=74.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCC------------------ccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGS------------------YITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERF 103 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~ 103 (188)
.+|+++|+.++|||||+.+|+....... .............+..+.....++++|+||+..|
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f 83 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDF 83 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHH
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccce
Confidence 3899999999999999999984331110 0011111222223331234467999999999998
Q ss_pred cccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 104 RTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 104 ~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
.......++.+|++++|+|+.+...-+.. +.+..+.... +|++| .||+|+.
T Consensus 84 ~~~~~~~~~~~D~ailvVda~~g~~~~~~-~~l~~~~~~~--~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 84 IKEMIRGLRQADIAILVVDANDGIQPQTE-EHLKILRELG--IPIIVVLNKMDLI 135 (188)
T ss_dssp HHHHHHHHTTSSEEEEEEETTTBSTHHHH-HHHHHHHHTT---SEEEEEETCTSS
T ss_pred eecccceecccccceeeeecccccccccc-cccccccccc--cceEEeeeeccch
Confidence 87777789999999999999876443322 2333343332 66666 9999985
No 218
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.44 E-value=1.4e-12 Score=102.98 Aligned_cols=111 Identities=17% Similarity=0.151 Sum_probs=74.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCC------------------CCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTF------------------SGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR 104 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~------------------~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~ 104 (188)
+|+++|..++|||||+++|+...- +++....+..+.....+.++ ..+++++||||+..|.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--DHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC--CEEEEEEECCCcHHHH
Confidence 589999999999999999974211 01111112222223333444 4678999999998888
Q ss_pred ccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC
Q psy1417 105 TITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 105 ~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~ 158 (188)
......++.+|++++|+|+.+...-+.. ..+..+.+. ++|+++ .||+|+..
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t~-~~~~~~~~~--~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQTE-TVWRQADRY--NVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHHH-HHHHHHHHc--CCCEEEEEECCCCCC
Confidence 7788889999999999999875432222 233333333 367777 99999843
No 219
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.44 E-value=1.2e-12 Score=111.95 Aligned_cols=113 Identities=12% Similarity=0.125 Sum_probs=76.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHh-CCCCCC-------------------ccceeeeeeEEEEEEeCCeEEEEEEEeCCCccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD-NTFSGS-------------------YITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER 102 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~-~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~ 102 (188)
+|+|+|..++|||||+.+|+. ...... .....|..+......++...+.+++|||||+..
T Consensus 13 niaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~d 92 (527)
T TIGR00503 13 TFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHED 92 (527)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChhh
Confidence 999999999999999999863 211110 001123333334444455568899999999988
Q ss_pred ccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC
Q psy1417 103 FRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 103 ~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~ 158 (188)
|.......++.+|++++|+|+++...- ....++..... .++|+++ +||+|+..
T Consensus 93 f~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~--~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 93 FSEDTYRTLTAVDNCLMVIDAAKGVET-RTRKLMEVTRL--RDTPIFTFMNKLDRDI 146 (527)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCH-HHHHHHHHHHh--cCCCEEEEEECccccC
Confidence 877666788999999999999874211 12334443333 3478877 99999843
No 220
>KOG1707|consensus
Probab=99.43 E-value=2.2e-12 Score=108.36 Aligned_cols=162 Identities=16% Similarity=0.238 Sum_probs=124.8
Q ss_pred ChhhhcccccccCCCCCCCCCCCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEE
Q psy1417 15 SPIRYVQGAREQIPTGRGKNGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQI 94 (188)
Q Consensus 15 s~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l 94 (188)
++...+..+|++.-........+.++ ++.++|++++|||.+++.++++.+...+..+....+..+.+...|....+.+
T Consensus 401 ~~~~ai~vtRkr~~d~~~~~~~R~Vf--~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL 478 (625)
T KOG1707|consen 401 SQASAIRVTRKRKLDRKKKQTDRKVF--QCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLIL 478 (625)
T ss_pred ccccceehhhhhhhhhccccccceee--eEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEE
Confidence 45566667777777756666667778 9999999999999999999998888777777777787777777788888999
Q ss_pred EeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC----ccchhhhhhhc
Q psy1417 95 WDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ----RSIDEVNLCHR 169 (188)
Q Consensus 95 ~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~----~~i~~~~~~~~ 169 (188)
-|.+-. ........- ..||+++++||.+++.+|+.+...+..-... ..+|+++ ++|+|+++ -.++..++|.+
T Consensus 479 ~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~ 555 (625)
T KOG1707|consen 479 REIGED-DQDFLTSKE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQ 555 (625)
T ss_pred eecCcc-ccccccCcc-ceeeeEEEecccCCchHHHHHHHHHHHhhhc-cCCceEEEeeccccchhhhccCCChHHHHHh
Confidence 988754 222222222 6799999999999999999887654443333 6789887 99999933 34667899999
Q ss_pred CCCCceEEeecc
Q psy1417 170 GSVDGSVESTSV 181 (188)
Q Consensus 170 ~~~~~~~e~~~~ 181 (188)
.++..+.-.++.
T Consensus 556 ~~i~~P~~~S~~ 567 (625)
T KOG1707|consen 556 LGLPPPIHISSK 567 (625)
T ss_pred cCCCCCeeeccC
Confidence 999888777655
No 221
>PRK13351 elongation factor G; Reviewed
Probab=99.43 E-value=7.9e-13 Score=116.86 Aligned_cols=109 Identities=19% Similarity=0.233 Sum_probs=79.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCC-------------CC-------CccceeeeeeEEEEEEeCCeEEEEEEEeCCCccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTF-------------SG-------SYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER 102 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~-------------~~-------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~ 102 (188)
||+|+|..++|||||+++|+...- .. ++..|+.... ..+.++ .+.+++|||||+.+
T Consensus 10 ni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~--~~~~~~--~~~i~liDtPG~~d 85 (687)
T PRK13351 10 NIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAA--TSCDWD--NHRINLIDTPGHID 85 (687)
T ss_pred EEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccce--EEEEEC--CEEEEEEECCCcHH
Confidence 999999999999999999984211 00 1122332222 233333 47899999999999
Q ss_pred ccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC
Q psy1417 103 FRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 103 ~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~ 158 (188)
|......+++.+|++++|+|+++..+.+....| ..+.+. ++|+++ +||+|+..
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~~--~~p~iiviNK~D~~~ 139 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADRY--GIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHhc--CCCEEEEEECCCCCC
Confidence 888888899999999999999988777665555 334333 477777 99999853
No 222
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.43 E-value=7.3e-13 Score=113.29 Aligned_cols=113 Identities=12% Similarity=0.173 Sum_probs=76.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHh--CCCC---------------CCcc---ceeeeeeEEEEEEeCCeEEEEEEEeCCCccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD--NTFS---------------GSYI---TTIGVDFKIRTIDVNGEKVKLQIWDTAGQER 102 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~--~~~~---------------~~~~---~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~ 102 (188)
+|+|+|..++|||||+.+|+. +... .++. ..-|..+......++...+.+++|||||+..
T Consensus 12 ni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~d 91 (526)
T PRK00741 12 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHED 91 (526)
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCchh
Confidence 899999999999999999973 1100 0000 0112223333333333457899999999999
Q ss_pred ccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC
Q psy1417 103 FRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 103 ~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~ 158 (188)
|......+++.+|++++|+|+++..... ...++..... .++|+++ +||+|+..
T Consensus 92 f~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~--~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 92 FSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL--RDTPIFTFINKLDRDG 145 (526)
T ss_pred hHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh--cCCCEEEEEECCcccc
Confidence 8877777889999999999998754322 2334343333 3488887 99999843
No 223
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.42 E-value=5.5e-12 Score=87.13 Aligned_cols=102 Identities=22% Similarity=0.198 Sum_probs=63.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCC---CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccc----------cccchh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFS---GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERF----------RTITST 109 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~----------~~~~~~ 109 (188)
+|+++|.+|+|||||++.|.+.+.. .....|.. .....+.+++.. +.++||||-..- ....+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~--~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~ 76 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRD--PVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQ 76 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSS--EEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceee--eeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHH
Confidence 6899999999999999999975321 11122222 222444556655 579999995321 122233
Q ss_pred ccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEc
Q psy1417 110 YYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLR 153 (188)
Q Consensus 110 ~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK 153 (188)
+..+|++++|+|.++... +.....+.++. .+.|+++ .||
T Consensus 77 -~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 77 -ISKSDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp -HCTESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEEES
T ss_pred -HHHCCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEEcC
Confidence 378999999999777321 22333334442 4577776 998
No 224
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.41 E-value=1.6e-12 Score=99.80 Aligned_cols=111 Identities=17% Similarity=0.110 Sum_probs=69.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCC--C-------------------------C----CccceeeeeeEEEEEEeCCeEEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTF--S-------------------------G----SYITTIGVDFKIRTIDVNGEKVK 91 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~--~-------------------------~----~~~~t~~~~~~~~~~~~~~~~~~ 91 (188)
+|+++|..++|||||+.+|+...- . + +....+..+.....+.+ ....
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~--~~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET--EKYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee--CCeE
Confidence 589999999999999999973210 0 0 00111111222223333 4477
Q ss_pred EEEEeCCCcccccccchhccccCCEEEEEEeCCChh-------hHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 92 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGE-------TFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 92 l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~-------s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
+.+||+||+..|.......+..+|++++|+|+++.. ..+....|. .. ......|+++ +||+|+.
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LA-RTLGVKQLIVAVNKMDDV 150 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HH-HHcCCCeEEEEEEccccc
Confidence 999999999877665556678899999999998742 112222222 22 2333357776 9999985
No 225
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.39 E-value=2.1e-12 Score=114.48 Aligned_cols=111 Identities=18% Similarity=0.159 Sum_probs=77.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC---------------CCCCC---ccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN---------------TFSGS---YITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR 104 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~---------------~~~~~---~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~ 104 (188)
||+++|+.++|||||+.+|+.. .+.+. +..|+........+..++..+.+++|||||+..|.
T Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~ 100 (720)
T TIGR00490 21 NIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDFG 100 (720)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccccH
Confidence 9999999999999999999742 11111 22344433333334456677899999999999988
Q ss_pred ccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 105 TITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 105 ~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
......++.+|++++|+|+.+....+...-|.. ..+ .+.|+++ +||+|.
T Consensus 101 ~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~~--~~~p~ivviNKiD~ 150 (720)
T TIGR00490 101 GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-ALK--ENVKPVLFINKVDR 150 (720)
T ss_pred HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HHH--cCCCEEEEEEChhc
Confidence 777888999999999999887543333333322 222 2355555 999998
No 226
>COG1159 Era GTPase [General function prediction only]
Probab=99.38 E-value=1.6e-12 Score=101.73 Aligned_cols=107 Identities=20% Similarity=0.198 Sum_probs=68.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCC---CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccc--------ccchhcc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFS---GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR--------TITSTYY 111 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~--------~~~~~~~ 111 (188)
-++++|.++||||||+|++++.+.. .....|-. ....+. .....++.+.||||--+-+ ......+
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~---~I~GI~-t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRN---RIRGIV-TTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhh---heeEEE-EcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 6899999999999999999987642 22222211 122222 2235779999999943322 2233347
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 112 RGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 112 ~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
.++|++++|+|++.... .-..|+-+..+. .+.|+++ .||+|.
T Consensus 84 ~dvDlilfvvd~~~~~~--~~d~~il~~lk~-~~~pvil~iNKID~ 126 (298)
T COG1159 84 KDVDLILFVVDADEGWG--PGDEFILEQLKK-TKTPVILVVNKIDK 126 (298)
T ss_pred ccCcEEEEEEeccccCC--ccHHHHHHHHhh-cCCCeEEEEEcccc
Confidence 78999999999887432 233333333333 3467777 999997
No 227
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.38 E-value=5.4e-12 Score=95.19 Aligned_cols=112 Identities=14% Similarity=0.135 Sum_probs=72.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCC-----C-CCc--------cceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTF-----S-GSY--------ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTIT 107 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~-----~-~~~--------~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~ 107 (188)
++|+++|..++|||||+++|+.... . ..+ ...-|.........++....++.+.||||+..|....
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~ 82 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNM 82 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHH
Confidence 5999999999999999999985310 0 000 0012222333333344445678999999998887666
Q ss_pred hhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCce-EEE-EEcCCC
Q psy1417 108 STYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVN-RIL-GLRLGL 156 (188)
Q Consensus 108 ~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-ilv-gnK~Dl 156 (188)
...+..+|++++|+|+.....-+. ...+..+.+.. +| +++ .||+|+
T Consensus 83 ~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~~--~~~iIvviNK~D~ 130 (195)
T cd01884 83 ITGAAQMDGAILVVSATDGPMPQT-REHLLLARQVG--VPYIVVFLNKADM 130 (195)
T ss_pred HHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHcC--CCcEEEEEeCCCC
Confidence 667889999999999887532221 22333343332 55 545 999998
No 228
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.38 E-value=4e-12 Score=94.57 Aligned_cols=106 Identities=22% Similarity=0.320 Sum_probs=76.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCC----------cccccccchhccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAG----------QERFRTITSTYYR 112 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g----------~~~~~~~~~~~~~ 112 (188)
.|+++|.++||||||||.|.+.+-....+.|.|.+...+.+.+++. +.+.|.|| ++.+..+...|++
T Consensus 26 EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~ 102 (200)
T COG0218 26 EIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLE 102 (200)
T ss_pred EEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999986644555677787776666666654 78899998 3445555566665
Q ss_pred c---CCEEEEEEeCCChhhHHH--HHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 113 G---THGVIVVYDVTSGETFAN--VKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 113 ~---~~~vilv~d~~~~~s~~~--~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
. -.++++++|+...-.-.. +-+|+.+.. +|++| .||+|.
T Consensus 103 ~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~-----i~~~vv~tK~DK 147 (200)
T COG0218 103 KRANLKGVVLLIDARHPPKDLDREMIEFLLELG-----IPVIVVLTKADK 147 (200)
T ss_pred hchhheEEEEEEECCCCCcHHHHHHHHHHHHcC-----CCeEEEEEcccc
Confidence 4 458889999886533222 234444433 88777 999997
No 229
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.36 E-value=1.2e-11 Score=107.57 Aligned_cols=105 Identities=14% Similarity=0.104 Sum_probs=69.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHh---CCCCCCc--cceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD---NTFSGSY--ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 117 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~---~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~v 117 (188)
-|.++|..++|||||+++|.+ +.+.++. ..|+...+. .+...+ ...+.+||+||+++|.......+..+|++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~--~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~ 78 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYA--YWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHA 78 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeE--EEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEE
Confidence 478999999999999999985 3344443 334433332 222222 23489999999999865555668889999
Q ss_pred EEEEeCCC---hhhHHHHHHHHHHHHhhCCCce-E-EEEEcCCC
Q psy1417 118 IVVYDVTS---GETFANVKRWLHEIENNCEVVN-R-ILGLRLGL 156 (188)
Q Consensus 118 ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~p-i-lvgnK~Dl 156 (188)
++|+|+++ +++.+.+. .+.... +| + +|+||+|+
T Consensus 79 lLVVda~eg~~~qT~ehl~----il~~lg--i~~iIVVlNKiDl 116 (614)
T PRK10512 79 LLVVACDDGVMAQTREHLA----ILQLTG--NPMLTVALTKADR 116 (614)
T ss_pred EEEEECCCCCcHHHHHHHH----HHHHcC--CCeEEEEEECCcc
Confidence 99999887 34433332 222222 33 3 45999998
No 230
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.36 E-value=6.7e-12 Score=110.93 Aligned_cols=115 Identities=19% Similarity=0.197 Sum_probs=78.5
Q ss_pred CcccceeEEEEeCCCCCHHHHHHHHHhCCC-C---CCc--------------cceeeeeeEEEEEEeCCeEEEEEEEeCC
Q psy1417 37 THIFSQKSSFLQLVGVGKSSLLIRFSDNTF-S---GSY--------------ITTIGVDFKIRTIDVNGEKVKLQIWDTA 98 (188)
Q Consensus 37 ~~~~~~ki~vvG~~~~GKssLi~~l~~~~~-~---~~~--------------~~t~~~~~~~~~~~~~~~~~~l~l~D~~ 98 (188)
.++. +|+|+|..++|||||+++|+...- . ... ...+..+.....+.+++ +++++||||
T Consensus 8 ~~ir--ni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTP 83 (689)
T TIGR00484 8 NRFR--NIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTP 83 (689)
T ss_pred cccc--EEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECC
Confidence 3445 999999999999999999974211 0 000 11122222333444444 679999999
Q ss_pred CcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC
Q psy1417 99 GQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 99 g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~ 158 (188)
|+..+.......++.+|++++|+|+.+....+...-| ..+.+. ++|+++ +||+|+..
T Consensus 84 G~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~--~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 84 GHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANRY--EVPRIAFVNKMDKTG 141 (689)
T ss_pred CCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHHc--CCCEEEEEECCCCCC
Confidence 9988877778889999999999999886555543333 333333 377777 99999843
No 231
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.33 E-value=9.1e-12 Score=86.39 Aligned_cols=86 Identities=23% Similarity=0.177 Sum_probs=65.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCcc-ceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYI-TTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
+|++++|+.|+|||+|+.++..+.+...+. ++++ +......+++.++++++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 389999999999999999998777754443 4433 222334467788999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC
Q psy1417 121 YDVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL 156 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl 156 (188)
|+.++.++++.+ |.+.+.... .++|+++ +||.|+
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl 89 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVL 89 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhh
Confidence 999999999876 887776643 4467666 999998
No 232
>PRK12735 elongation factor Tu; Reviewed
Probab=99.31 E-value=2.3e-11 Score=101.14 Aligned_cols=111 Identities=12% Similarity=0.108 Sum_probs=71.0
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhC-------CC---------CCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDN-------TF---------SGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR 104 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~-------~~---------~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~ 104 (188)
+++|+++|..++|||||+++|+.. .+ .++. .-|.........++.....+.++||||+..|.
T Consensus 12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~--~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEK--ARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHH--hcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 459999999999999999999852 10 0011 11222222233343344568999999998876
Q ss_pred ccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCce-EEE-EEcCCC
Q psy1417 105 TITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVN-RIL-GLRLGL 156 (188)
Q Consensus 105 ~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-ilv-gnK~Dl 156 (188)
......+..+|++++|+|+.+...-+. ...+..+... ++| +++ .||+|+
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~~~--gi~~iivvvNK~Dl 140 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV--GVPYIVVFLNKCDM 140 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHHHc--CCCeEEEEEEecCC
Confidence 555566778999999999987432221 2233333322 366 444 999998
No 233
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.31 E-value=4.1e-11 Score=98.97 Aligned_cols=108 Identities=20% Similarity=0.114 Sum_probs=73.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCC-CCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccc--------hhcccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTF-SGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTIT--------STYYRG 113 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~--------~~~~~~ 113 (188)
|++++|.++||||||+|.|++.+- .....|....++-...+.++| +.+.+.||.|-.+..... ...++.
T Consensus 219 kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ 296 (454)
T COG0486 219 KVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAIEE 296 (454)
T ss_pred eEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHHHh
Confidence 999999999999999999996542 122233333455556667777 779999999965432221 223678
Q ss_pred CCEEEEEEeCCChhhHHH-HHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 114 THGVIVVYDVTSGETFAN-VKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 114 ~~~vilv~d~~~~~s~~~-~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
+|.+++|+|.+.+.+-+. ...+ ....+.|+++ .||.|+.
T Consensus 297 ADlvL~v~D~~~~~~~~d~~~~~-----~~~~~~~~i~v~NK~DL~ 337 (454)
T COG0486 297 ADLVLFVLDASQPLDKEDLALIE-----LLPKKKPIIVVLNKADLV 337 (454)
T ss_pred CCEEEEEEeCCCCCchhhHHHHH-----hcccCCCEEEEEechhcc
Confidence 999999999998622222 2222 3344577776 9999994
No 234
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.29 E-value=1.9e-11 Score=100.62 Aligned_cols=108 Identities=19% Similarity=0.135 Sum_probs=72.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCC-CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccc---------ccchhccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFS-GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR---------TITSTYYR 112 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~---------~~~~~~~~ 112 (188)
.|+++|.++||||||.|||.+.+.. .+..|.+..+..+....+.+.. +.+.||+|-+... ......+.
T Consensus 5 ~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 5 VVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred EEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 7999999999999999999976532 1223444444444555666644 8999999965322 22344567
Q ss_pred cCCEEEEEEeCCChhhHHH--HHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 113 GTHGVIVVYDVTSGETFAN--VKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 113 ~~~~vilv~d~~~~~s~~~--~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
.||+++||+|....-+-+. +.+|+. ..+.|+++ .||+|-.
T Consensus 83 eADvilfvVD~~~Git~~D~~ia~~Lr-----~~~kpviLvvNK~D~~ 125 (444)
T COG1160 83 EADVILFVVDGREGITPADEEIAKILR-----RSKKPVILVVNKIDNL 125 (444)
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHH-----hcCCCEEEEEEcccCc
Confidence 8999999999887543222 334433 22377766 9999964
No 235
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.29 E-value=1.2e-11 Score=103.20 Aligned_cols=112 Identities=17% Similarity=0.170 Sum_probs=66.8
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCCC---CCC--ccceeeeeeEEEEE----------------EeC--C----eEEEEE
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNTF---SGS--YITTIGVDFKIRTI----------------DVN--G----EKVKLQ 93 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~~---~~~--~~~t~~~~~~~~~~----------------~~~--~----~~~~l~ 93 (188)
+++|+++|..++|||||+.+|.+... .++ ...|+...+....+ ..+ + ....++
T Consensus 9 ~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 88 (411)
T PRK04000 9 EVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVS 88 (411)
T ss_pred cEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEE
Confidence 45999999999999999999854211 111 11233322211010 001 0 135799
Q ss_pred EEeCCCcccccccchhccccCCEEEEEEeCCCh----hhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 94 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSG----ETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 94 l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~----~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
+||+||++.|..........+|++++|+|+++. ++.+.+.. +.. ....|+++ +||+|+.
T Consensus 89 liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~----l~~-~~i~~iiVVlNK~Dl~ 152 (411)
T PRK04000 89 FVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMA----LDI-IGIKNIVIVQNKIDLV 152 (411)
T ss_pred EEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHH----HHH-cCCCcEEEEEEeeccc
Confidence 999999988765444445567999999999954 33333322 222 22234555 9999983
No 236
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.29 E-value=2.7e-11 Score=100.66 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=70.4
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhC-----C--C---------CCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDN-----T--F---------SGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR 104 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~-----~--~---------~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~ 104 (188)
+++|+++|..++|||||+++|+.. + + .++... |.......+.++.....+.+||+||+++|.
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~r--G~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKAR--GITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhc--CcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 349999999999999999999732 0 0 011111 222223334444455678999999998886
Q ss_pred ccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCce-EEE-EEcCCC
Q psy1417 105 TITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVN-RIL-GLRLGL 156 (188)
Q Consensus 105 ~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-ilv-gnK~Dl 156 (188)
.........+|++++|+|+.+...-+.. +.+..+... ++| +++ .||+|+
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~~--gi~~iIvvvNK~Dl 140 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQV--GVPYIVVFLNKCDM 140 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc--CCCEEEEEEEeccc
Confidence 5444456678999999999874222221 222223322 355 444 999998
No 237
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.28 E-value=1.3e-11 Score=102.84 Aligned_cols=116 Identities=14% Similarity=0.109 Sum_probs=69.7
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCCC---CCC--ccceeeeeeEEEE------------EEe----CC------eEEEEE
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNTF---SGS--YITTIGVDFKIRT------------IDV----NG------EKVKLQ 93 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~~---~~~--~~~t~~~~~~~~~------------~~~----~~------~~~~l~ 93 (188)
+++|+++|..++|||||+++|.+... .++ ..-|+...+.... ++. ++ ....++
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 45999999999999999999964321 111 1112222111000 001 11 136799
Q ss_pred EEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 94 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 94 l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
+||+||++.|..........+|++++|+|+++........+.+..+. .....|++| +||+|+.
T Consensus 84 liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~gi~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 84 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALE-IIGIKNIVIVQNKIDLV 147 (406)
T ss_pred EEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHH-HcCCCeEEEEEEccccC
Confidence 99999999987776666778899999999996431111112222222 222245555 9999983
No 238
>PLN03126 Elongation factor Tu; Provisional
Probab=99.28 E-value=3.4e-11 Score=101.94 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=72.3
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhC------CCCCCc--------cceeeeeeEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDN------TFSGSY--------ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTI 106 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~------~~~~~~--------~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~ 106 (188)
.++|+++|..++|||||+++|+.. ...+.+ ...-|.........++.....+.++|+||+++|...
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~~ 160 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKN 160 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHHH
Confidence 349999999999999999999852 111110 111122222222223233457899999999988665
Q ss_pred chhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCce-EEE-EEcCCC
Q psy1417 107 TSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVN-RIL-GLRLGL 156 (188)
Q Consensus 107 ~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-ilv-gnK~Dl 156 (188)
....+..+|++++|+|+.+...-+. .+++..+... ++| +++ .||+|+
T Consensus 161 ~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~--gi~~iIvvvNK~Dl 209 (478)
T PLN03126 161 MITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV--GVPNMVVFLNKQDQ 209 (478)
T ss_pred HHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCeEEEEEecccc
Confidence 5666778999999999887543222 3333334433 366 555 999998
No 239
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.28 E-value=4.8e-11 Score=91.87 Aligned_cols=111 Identities=17% Similarity=0.141 Sum_probs=68.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccc-----------------------eeeeeeEEEEE-------------EeC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYIT-----------------------TIGVDFKIRTI-------------DVN 86 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~-----------------------t~~~~~~~~~~-------------~~~ 86 (188)
||+++|+.++|||||+.+|..+.+.+.... .+|.+.....+ .+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999997665432110 01111100000 011
Q ss_pred CeEEEEEEEeCCCcccccccchhccc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 87 GEKVKLQIWDTAGQERFRTITSTYYR--GTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 87 ~~~~~l~l~D~~g~~~~~~~~~~~~~--~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
.....+++.|+||+++|.......+. .+|++++|+|+.....- ....++..+.... +|+++ .||+|+
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~~~~--ip~ivvvNK~D~ 150 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLALALN--IPVFVVVTKIDL 150 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHHHcC--CCEEEEEECccc
Confidence 12356899999999888544333343 68999999998765331 1223334444333 67666 999998
No 240
>PRK12736 elongation factor Tu; Reviewed
Probab=99.27 E-value=3.8e-11 Score=99.75 Aligned_cols=113 Identities=15% Similarity=0.122 Sum_probs=71.5
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCCCCC--------------CccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSG--------------SYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTI 106 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~ 106 (188)
+++|+++|..++|||||+.+|++..... +....-|.........++.....+.++|+||+++|...
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~ 91 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVKN 91 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHHH
Confidence 4499999999999999999998521000 00001122223333444444567899999999888655
Q ss_pred chhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCce-EEE-EEcCCC
Q psy1417 107 TSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVN-RIL-GLRLGL 156 (188)
Q Consensus 107 ~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-ilv-gnK~Dl 156 (188)
.......+|++++|+|++....-+. ...+..+... ++| ++| .||+|+
T Consensus 92 ~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~--g~~~~IvviNK~D~ 140 (394)
T PRK12736 92 MITGAAQMDGAILVVAATDGPMPQT-REHILLARQV--GVPYLVVFLNKVDL 140 (394)
T ss_pred HHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc--CCCEEEEEEEecCC
Confidence 5555678899999999886422221 2222333333 366 555 999998
No 241
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.26 E-value=9.3e-11 Score=92.94 Aligned_cols=110 Identities=16% Similarity=0.194 Sum_probs=73.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCC-Cccc-eeeeeeEEEEEEeCCeEEEEEEEeCCCcc-c-----ccccchhc--c-
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSG-SYIT-TIGVDFKIRTIDVNGEKVKLQIWDTAGQE-R-----FRTITSTY--Y- 111 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~-~~~~-t~~~~~~~~~~~~~~~~~~l~l~D~~g~~-~-----~~~~~~~~--~- 111 (188)
.|+|.|.++||||||++.+...+... .|.- |-+.... .++.+...+++.||||-- + ..-..+.. +
T Consensus 170 TivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vG----hfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 170 TIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVG----HFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred eEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEe----eeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence 78999999999999999998776433 2322 2222111 223344579999999941 1 11111111 1
Q ss_pred ccCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 112 RGTHGVIVVYDVTSG--ETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 112 ~~~~~vilv~d~~~~--~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
.-.++|+|+||.+.. -+.+.....++++..... .|+++ .||.|+.
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~ 293 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIA 293 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEeccccc
Confidence 226799999998864 467777788899998776 67766 9999983
No 242
>KOG0090|consensus
Probab=99.26 E-value=1.6e-11 Score=91.62 Aligned_cols=109 Identities=17% Similarity=0.271 Sum_probs=78.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccc---cCCEEEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYR---GTHGVIV 119 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~---~~~~vil 119 (188)
.++++|+.++|||+|.-+|..+.+...+.+. ..+- .....++.. .++.|.||+.+.+.....+++ .+-++||
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi-epn~--a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 40 AVLLVGLSDSGKTSLFTQLITGSHRGTVTSI-EPNE--ATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred cEEEEecCCCCceeeeeehhcCCccCeeeee-ccce--eeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 7899999999999999999988654433222 2122 222223222 789999999998876666666 7889999
Q ss_pred EEeCC-ChhhHHHHHHHHHHHHhhC---C-CceEEE-EEcCCC
Q psy1417 120 VYDVT-SGETFANVKRWLHEIENNC---E-VVNRIL-GLRLGL 156 (188)
Q Consensus 120 v~d~~-~~~s~~~~~~~~~~i~~~~---~-~~pilv-gnK~Dl 156 (188)
|+|.. .......+.+++..+...+ . .+|++| .||.|+
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl 157 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDL 157 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhh
Confidence 99954 4555777777776666544 3 378998 999998
No 243
>PRK12739 elongation factor G; Reviewed
Probab=99.25 E-value=5.8e-11 Score=105.06 Aligned_cols=114 Identities=19% Similarity=0.203 Sum_probs=77.1
Q ss_pred cccceeEEEEeCCCCCHHHHHHHHHhCCC--------CC----------CccceeeeeeEEEEEEeCCeEEEEEEEeCCC
Q psy1417 38 HIFSQKSSFLQLVGVGKSSLLIRFSDNTF--------SG----------SYITTIGVDFKIRTIDVNGEKVKLQIWDTAG 99 (188)
Q Consensus 38 ~~~~~ki~vvG~~~~GKssLi~~l~~~~~--------~~----------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g 99 (188)
++. +|+++|..++|||||+++|+...- .. +....+..+.....+.+++ .+++++||||
T Consensus 7 ~ir--ni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG 82 (691)
T PRK12739 7 KTR--NIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPG 82 (691)
T ss_pred Cee--EEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCC
Confidence 445 999999999999999999974210 00 0112222233334444444 6789999999
Q ss_pred cccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC
Q psy1417 100 QERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 100 ~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~ 158 (188)
+..|.......++.+|++++|+|+.+...-+...-| ..+.+. ++|+++ .||+|+..
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~-~~~~~~--~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVW-RQADKY--GVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHH-HHHHHc--CCCEEEEEECCCCCC
Confidence 988877778889999999999999876543333222 333333 367767 99999843
No 244
>CHL00071 tufA elongation factor Tu
Probab=99.23 E-value=1.1e-10 Score=97.37 Aligned_cols=110 Identities=14% Similarity=0.099 Sum_probs=71.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCC----------------CCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTF----------------SGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT 105 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~ 105 (188)
++|+++|..++|||||+++|+.... .++..+ |.........+......+.+.|+||+..|..
T Consensus 13 ~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~r--g~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~ 90 (409)
T CHL00071 13 VNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKAR--GITINTAHVEYETENRHYAHVDCPGHADYVK 90 (409)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcC--CEeEEccEEEEccCCeEEEEEECCChHHHHH
Confidence 4999999999999999999985311 011112 2222222233333445688999999988765
Q ss_pred cchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCce-EEE-EEcCCC
Q psy1417 106 ITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVN-RIL-GLRLGL 156 (188)
Q Consensus 106 ~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-ilv-gnK~Dl 156 (188)
.....+..+|++++|+|+.....-+ ....+..+... ++| +++ .||+|+
T Consensus 91 ~~~~~~~~~D~~ilVvda~~g~~~q-t~~~~~~~~~~--g~~~iIvvvNK~D~ 140 (409)
T CHL00071 91 NMITGAAQMDGAILVVSAADGPMPQ-TKEHILLAKQV--GVPNIVVFLNKEDQ 140 (409)
T ss_pred HHHHHHHhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCEEEEEEEccCC
Confidence 5566678899999999988643221 22233333333 266 555 999998
No 245
>KOG1423|consensus
Probab=99.23 E-value=5.4e-11 Score=93.41 Aligned_cols=121 Identities=17% Similarity=0.157 Sum_probs=74.2
Q ss_pred CCCCCCCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccc--------
Q psy1417 31 RGKNGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER-------- 102 (188)
Q Consensus 31 ~~~~~~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-------- 102 (188)
+.+....+.. .++++|.++||||||.|.+++.+.... +..+........-.+..+.+++.++||||--.
T Consensus 64 rde~e~~k~L--~vavIG~PNvGKStLtN~mig~kv~~v-S~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~ 140 (379)
T KOG1423|consen 64 RDEEEAQKSL--YVAVIGAPNVGKSTLTNQMIGQKVSAV-SRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHH 140 (379)
T ss_pred CCchhcceEE--EEEEEcCCCcchhhhhhHhhCCccccc-cccccceeeeeeEEEecCceEEEEecCCcccccchhhhHH
Confidence 3334445556 999999999999999999998765432 22222222222223344668899999999321
Q ss_pred ----ccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCce-EEEEEcCCC
Q psy1417 103 ----FRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVN-RILGLRLGL 156 (188)
Q Consensus 103 ----~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-ilvgnK~Dl 156 (188)
+.+.-......+|++++|+|+++....-. ...+..+.+. .++| +++.||.|.
T Consensus 141 l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y-s~ips~lvmnkid~ 197 (379)
T KOG1423|consen 141 LMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY-SKIPSILVMNKIDK 197 (379)
T ss_pred HHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH-hcCCceeeccchhc
Confidence 11122334667999999999996322111 1223333332 2456 566999996
No 246
>KOG0462|consensus
Probab=99.21 E-value=3.2e-10 Score=95.04 Aligned_cols=124 Identities=21% Similarity=0.206 Sum_probs=90.1
Q ss_pred CcccceeEEEEeCCCCCHHHHHHHHHhCCC-CC--------------CccceeeeeeEEEEEEe-CCeEEEEEEEeCCCc
Q psy1417 37 THIFSQKSSFLQLVGVGKSSLLIRFSDNTF-SG--------------SYITTIGVDFKIRTIDV-NGEKVKLQIWDTAGQ 100 (188)
Q Consensus 37 ~~~~~~ki~vvG~~~~GKssLi~~l~~~~~-~~--------------~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~ 100 (188)
.+.- |+.||-.-.-|||||..+|+.-.- .+ +....+........+.+ ++..+.+++.||||+
T Consensus 58 ~~iR--NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 58 ENIR--NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred hhcc--ceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 4555 889999999999999999984211 11 11111221122222222 367799999999999
Q ss_pred ccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcCCCCCccchhh
Q psy1417 101 ERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQRSIDEV 164 (188)
Q Consensus 101 ~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~Dl~~~~i~~~ 164 (188)
..|.....+.+..|+++++|+|++.....+.+..++..+.... .+|.|.||+|++...++..
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L--~iIpVlNKIDlp~adpe~V 197 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGL--AIIPVLNKIDLPSADPERV 197 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCC--eEEEeeeccCCCCCCHHHH
Confidence 9999999999999999999999999888888887766666543 5666799999966555433
No 247
>PRK00049 elongation factor Tu; Reviewed
Probab=99.21 E-value=2e-10 Score=95.46 Aligned_cols=112 Identities=13% Similarity=0.116 Sum_probs=72.4
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCCC----------------CCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNTF----------------SGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR 104 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~ 104 (188)
+++|+++|..++|||||+.+|+.... .++..+ |.........+......+.+.||||+.+|.
T Consensus 12 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~r--g~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKAR--GITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred EEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhc--CeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 45999999999999999999986210 011112 222222333343344668899999998876
Q ss_pred ccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceE-EE-EEcCCCC
Q psy1417 105 TITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNR-IL-GLRLGLN 157 (188)
Q Consensus 105 ~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pi-lv-gnK~Dl~ 157 (188)
......+..+|++++|+|+.....-+ ....+..+... ++|+ +| .||+|+-
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~~--g~p~iiVvvNK~D~~ 141 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV--GVPYIVVFLNKCDMV 141 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHHc--CCCEEEEEEeecCCc
Confidence 55556678999999999988753222 22233334333 2664 34 8999983
No 248
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.21 E-value=9e-11 Score=88.47 Aligned_cols=108 Identities=17% Similarity=0.078 Sum_probs=64.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCc----cceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccc--------c---c
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSY----ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT--------I---T 107 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~--------~---~ 107 (188)
+|+++|.+|||||||+|.+++....... ..|.. .......+++ ..+.++||||-..... + .
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~--~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~ 77 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKT--CQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCL 77 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccc--cceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHH
Confidence 7999999999999999999976532221 12222 2222333444 4689999999543311 1 1
Q ss_pred hhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCC----CceEEEEEcCCC
Q psy1417 108 STYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE----VVNRILGLRLGL 156 (188)
Q Consensus 108 ~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~----~~pilvgnK~Dl 156 (188)
.....+.|++++|+++.+ -+-+. ...+..+.+.+. ...++|.|+.|.
T Consensus 78 ~~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~ 128 (196)
T cd01852 78 SLSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDD 128 (196)
T ss_pred HhcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccc
Confidence 112356899999999876 22111 223333433322 234455899885
No 249
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.20 E-value=1.6e-10 Score=97.36 Aligned_cols=112 Identities=15% Similarity=0.093 Sum_probs=73.2
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCCC-------------------------------CCCccceeeeeeEEEEEEeCCeE
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNTF-------------------------------SGSYITTIGVDFKIRTIDVNGEK 89 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~ 89 (188)
+++|+++|..++|||||+.+|+...- .++... |.........+....
T Consensus 7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~r--GiTi~~~~~~~~~~~ 84 (447)
T PLN00043 7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERER--GITIDIALWKFETTK 84 (447)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhc--CceEEEEEEEecCCC
Confidence 34999999999999999999973210 001111 112222223344455
Q ss_pred EEEEEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHH-------HHHHHHHHHhhCCCc-eEEE-EEcCCCC
Q psy1417 90 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFAN-------VKRWLHEIENNCEVV-NRIL-GLRLGLN 157 (188)
Q Consensus 90 ~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~-------~~~~~~~i~~~~~~~-pilv-gnK~Dl~ 157 (188)
+.+++.|+||+++|.......+..+|++++|+|+++. .|+. ..+.+..+.. .++ +++| +||+|+.
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~--~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT--LGVKQMICCCNKMDAT 158 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH--cCCCcEEEEEEcccCC
Confidence 7899999999999987777888999999999999873 3432 2222222222 235 4566 9999974
No 250
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.19 E-value=3.7e-10 Score=90.04 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=61.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCC--CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccch---hcc------
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFS--GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITS---TYY------ 111 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~---~~~------ 111 (188)
+|+++|.+|+||||++|++++.... ....+ .+..........++ ..+.++||||......... ..+
T Consensus 40 rIllvGktGVGKSSliNsIlG~~v~~vs~f~s-~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~ 116 (313)
T TIGR00991 40 TILVMGKGGVGKSSTVNSIIGERIATVSAFQS-EGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRFLLG 116 (313)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccccCCCC-cceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999976531 11111 11111111222344 6799999999654321111 111
Q ss_pred ccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhCC----CceEEEEEcCCC
Q psy1417 112 RGTHGVIVVYDVTSGETFANV-KRWLHEIENNCE----VVNRILGLRLGL 156 (188)
Q Consensus 112 ~~~~~vilv~d~~~~~s~~~~-~~~~~~i~~~~~----~~pilvgnK~Dl 156 (188)
...|++++|.+++.. .+... ...+..+...+. .-.|++.|+.|.
T Consensus 117 ~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~ 165 (313)
T TIGR00991 117 KTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQF 165 (313)
T ss_pred CCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCcc
Confidence 258899999665532 12222 223333443321 123444999996
No 251
>PLN03127 Elongation factor Tu; Provisional
Probab=99.19 E-value=2.4e-10 Score=96.25 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=69.7
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhC------C----------CCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDN------T----------FSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR 104 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~------~----------~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~ 104 (188)
+++|+++|..++|||||+++|.+. . ..++..+.+..+ .....++....++.+.||||+..|.
T Consensus 61 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~--~~~~~~~~~~~~i~~iDtPGh~~f~ 138 (447)
T PLN03127 61 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIA--TAHVEYETAKRHYAHVDCPGHADYV 138 (447)
T ss_pred eEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceee--eeEEEEcCCCeEEEEEECCCccchH
Confidence 349999999999999999999621 1 011111222222 2333344444678999999998876
Q ss_pred ccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCce-EEE-EEcCCC
Q psy1417 105 TITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVN-RIL-GLRLGL 156 (188)
Q Consensus 105 ~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-ilv-gnK~Dl 156 (188)
.........+|++++|+|+++...-+. .+.+..+... ++| +++ .||+|+
T Consensus 139 ~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~~--gip~iIvviNKiDl 189 (447)
T PLN03127 139 KNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV--GVPSLVVFLNKVDV 189 (447)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc--CCCeEEEEEEeecc
Confidence 544445667999999999886532221 2222233333 266 445 999998
No 252
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.17 E-value=1.1e-10 Score=97.40 Aligned_cols=111 Identities=19% Similarity=0.140 Sum_probs=68.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCC-CCC--------------------------------ccceeeeeeEEEEEEeCCeE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTF-SGS--------------------------------YITTIGVDFKIRTIDVNGEK 89 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~-~~~--------------------------------~~~t~~~~~~~~~~~~~~~~ 89 (188)
+|+++|..++|||||+.+|+...- ... ....+..+.....+.. ..
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~--~~ 79 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST--DK 79 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc--CC
Confidence 899999999999999999973211 000 0000111222223323 34
Q ss_pred EEEEEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 90 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 90 ~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
.++.++|+||+++|.......+..+|++++|+|+.....-+....|. .+. .....+++| .||+|+.
T Consensus 80 ~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~-~~~~~~iivviNK~D~~ 146 (406)
T TIGR02034 80 RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IAS-LLGIRHVVLAVNKMDLV 146 (406)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHH-HcCCCcEEEEEEecccc
Confidence 57899999999988655555688999999999988653222222221 122 212234665 9999983
No 253
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.16 E-value=2.4e-11 Score=94.24 Aligned_cols=111 Identities=17% Similarity=0.251 Sum_probs=72.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEE-EEEeCCeEEEEEEEeCCCccc-------ccccchhccccC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIR-TIDVNGEKVKLQIWDTAGQER-------FRTITSTYYRGT 114 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~l~l~D~~g~~~-------~~~~~~~~~~~~ 114 (188)
+++++|.+|+|||||||.|+.++..+...-.++.+.... ...+++ -.+++||+||-+. ++.....++...
T Consensus 41 nvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~ 118 (296)
T COG3596 41 NVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKL 118 (296)
T ss_pred eEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHHhhhc
Confidence 999999999999999999997654332111112111111 112333 4599999998543 555566678889
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 115 HGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 115 ~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
|.++.+.++.++. +..-.+++..+.-.+-+.++++ .|.+|+
T Consensus 119 DLvL~l~~~~dra-L~~d~~f~~dVi~~~~~~~~i~~VtQ~D~ 160 (296)
T COG3596 119 DLVLWLIKADDRA-LGTDEDFLRDVIILGLDKRVLFVVTQADR 160 (296)
T ss_pred cEEEEeccCCCcc-ccCCHHHHHHHHHhccCceeEEEEehhhh
Confidence 9999999988864 2222334455554444467666 999997
No 254
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.16 E-value=1.8e-10 Score=97.69 Aligned_cols=111 Identities=21% Similarity=0.131 Sum_probs=67.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCC-CCC------------cc--------------------ceeeeeeEEEEEEeCCeE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTF-SGS------------YI--------------------TTIGVDFKIRTIDVNGEK 89 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~-~~~------------~~--------------------~t~~~~~~~~~~~~~~~~ 89 (188)
||+++|..++|||||+.+|+...- ... .. ..+..+.....+.. ..
T Consensus 29 ~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~--~~ 106 (474)
T PRK05124 29 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST--EK 106 (474)
T ss_pred EEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc--CC
Confidence 999999999999999999984321 110 00 00111222222333 34
Q ss_pred EEEEEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 90 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 90 ~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
.++.++||||++.|.......+..+|++++|+|++....-+....|. .+... ...|++| .||+|+.
T Consensus 107 ~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~~~l-g~~~iIvvvNKiD~~ 173 (474)
T PRK05124 107 RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IATLL-GIKHLVVAVNKMDLV 173 (474)
T ss_pred cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HHHHh-CCCceEEEEEeeccc
Confidence 57899999999888654444578999999999988643211111111 11111 1235665 9999983
No 255
>PRK00007 elongation factor G; Reviewed
Probab=99.15 E-value=2.1e-10 Score=101.47 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=76.6
Q ss_pred CcccceeEEEEeCCCCCHHHHHHHHHh--CCC------CC----------CccceeeeeeEEEEEEeCCeEEEEEEEeCC
Q psy1417 37 THIFSQKSSFLQLVGVGKSSLLIRFSD--NTF------SG----------SYITTIGVDFKIRTIDVNGEKVKLQIWDTA 98 (188)
Q Consensus 37 ~~~~~~ki~vvG~~~~GKssLi~~l~~--~~~------~~----------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~ 98 (188)
.++. ||+++|..++|||||+++|+. +.. .. +....+..+.....+.+.+ ..+++.|||
T Consensus 8 ~~Ir--ni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTP 83 (693)
T PRK00007 8 ERYR--NIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTP 83 (693)
T ss_pred ccee--EEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCC
Confidence 3455 999999999999999999973 211 00 0111222223333444444 679999999
Q ss_pred CcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC
Q psy1417 99 GQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 99 g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~ 158 (188)
|+..|.......+..+|++++|+|+.....-+...-|. .+.+.. +|+++ .||+|+..
T Consensus 84 G~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~~~--~p~iv~vNK~D~~~ 141 (693)
T PRK00007 84 GHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADKYK--VPRIAFVNKMDRTG 141 (693)
T ss_pred CcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHHcC--CCEEEEEECCCCCC
Confidence 99887666666788899999999988765554444333 333332 66666 99999843
No 256
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.15 E-value=1.9e-10 Score=94.90 Aligned_cols=112 Identities=22% Similarity=0.182 Sum_probs=70.6
Q ss_pred cccceeEEEEeCCCCCHHHHHHHHHhCCC-CCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcc----------ccccc
Q psy1417 38 HIFSQKSSFLQLVGVGKSSLLIRFSDNTF-SGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQE----------RFRTI 106 (188)
Q Consensus 38 ~~~~~ki~vvG~~~~GKssLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~----------~~~~~ 106 (188)
..+ ||+++|.+++|||||+|++++.+- .....+....+.-...+.++++ .+.+.||.|-. .|.-.
T Consensus 177 ~~i--kiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~ 252 (444)
T COG1160 177 DPI--KIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVA 252 (444)
T ss_pred Cce--EEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeeh
Confidence 567 999999999999999999996542 1121222222333445555664 47899999932 23211
Q ss_pred -chhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 107 -TSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 107 -~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
....+..++++++|.|++.+-+-+...- ...+.+. ..+++| .||.|+
T Consensus 253 rt~~aI~~a~vvllviDa~~~~~~qD~~i-a~~i~~~--g~~~vIvvNKWDl 301 (444)
T COG1160 253 RTLKAIERADVVLLVIDATEGISEQDLRI-AGLIEEA--GRGIVIVVNKWDL 301 (444)
T ss_pred hhHhHHhhcCEEEEEEECCCCchHHHHHH-HHHHHHc--CCCeEEEEEcccc
Confidence 1234667999999999998765444331 1112222 255555 999997
No 257
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.15 E-value=3.6e-10 Score=97.11 Aligned_cols=126 Identities=17% Similarity=0.117 Sum_probs=88.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccc-------ccchhcc-ccC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR-------TITSTYY-RGT 114 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-------~~~~~~~-~~~ 114 (188)
+++++|.+|||||||.|++.+.+....+-|.+..+...-.+...++. +++.|.||--... -.++..+ .+.
T Consensus 5 ~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~ 82 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEGKP 82 (653)
T ss_pred eEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcCCC
Confidence 79999999999999999999887666667766666666666666644 8899999943332 1223333 346
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC---ccchhhhhhhcCCCCce
Q psy1417 115 HGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ---RSIDEVNLCHRGSVDGS 175 (188)
Q Consensus 115 ~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~---~~i~~~~~~~~~~~~~~ 175 (188)
|+++-|+|+++-+.--.+.-.+.++ +.|+++ .|++|..+ -.++.+++.+..|+...
T Consensus 83 D~ivnVvDAtnLeRnLyltlQLlE~-----g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv 142 (653)
T COG0370 83 DLIVNVVDATNLERNLYLTLQLLEL-----GIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVV 142 (653)
T ss_pred CEEEEEcccchHHHHHHHHHHHHHc-----CCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEE
Confidence 9999999999866543333222222 278877 99999832 36777788877776544
No 258
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.15 E-value=1.9e-10 Score=103.68 Aligned_cols=117 Identities=17% Similarity=0.161 Sum_probs=78.1
Q ss_pred CCcccceeEEEEeCCCCCHHHHHHHHHhCCCC-C----------Cc-----cceeeeeeEEEEEEe--------------
Q psy1417 36 PTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFS-G----------SY-----ITTIGVDFKIRTIDV-------------- 85 (188)
Q Consensus 36 ~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~-~----------~~-----~~t~~~~~~~~~~~~-------------- 85 (188)
+.++. +|+|+|..++|||||+.+|+...-. . ++ ...+..+.....+.+
T Consensus 16 ~~~Ir--ni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
T PLN00116 16 KHNIR--NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGER 93 (843)
T ss_pred ccCcc--EEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccccc
Confidence 34455 9999999999999999999843210 0 00 011111111112222
Q ss_pred CCeEEEEEEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 86 NGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 86 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
++..+.+++.||||+..|.......++.+|++++|+|+.+....+...-|.. +... ++|+++ .||+|..
T Consensus 94 ~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~~~~--~~p~i~~iNK~D~~ 163 (843)
T PLN00116 94 DGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALGE--RIRPVLTVNKMDRC 163 (843)
T ss_pred CCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-HHHC--CCCEEEEEECCccc
Confidence 2235788999999999998888888899999999999998765555444433 3222 377666 9999984
No 259
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.15 E-value=5.5e-10 Score=90.29 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=56.6
Q ss_pred EEEEEEEeCCCcccccccchhccccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHh--hCCCceEEE-EEcCC
Q psy1417 89 KVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSG----------ETFANVKRWLHEIEN--NCEVVNRIL-GLRLG 155 (188)
Q Consensus 89 ~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~----------~s~~~~~~~~~~i~~--~~~~~pilv-gnK~D 155 (188)
.+.+.+||++|+...+..|.+++.+++++++|+|+++- ..+.+....++.+.+ ...++|++| +||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 46789999999999999999999999999999999873 345555555555554 225689988 99999
Q ss_pred CCCccc
Q psy1417 156 LNQRSI 161 (188)
Q Consensus 156 l~~~~i 161 (188)
+-...+
T Consensus 240 ~f~~ki 245 (317)
T cd00066 240 LFEEKI 245 (317)
T ss_pred HHHHhh
Confidence 843333
No 260
>KOG3886|consensus
Probab=99.14 E-value=4.1e-11 Score=90.64 Aligned_cols=111 Identities=25% Similarity=0.346 Sum_probs=78.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCC---CccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccc-----cccchhccccC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSG---SYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERF-----RTITSTYYRGT 114 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~-----~~~~~~~~~~~ 114 (188)
||+++|.+|+|||++-..+..+-..- ...+|+..+-....+ - +...+++||++|++.+ .......+++.
T Consensus 6 KvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rf--l-Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 6 KVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRF--L-GNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred eEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhh--h-hhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 99999999999999877766332111 112333332222211 1 2356999999999854 23456678899
Q ss_pred CEEEEEEeCCChhh---HHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 115 HGVIVVYDVTSGET---FANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 115 ~~vilv~d~~~~~s---~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
+++++|||++..+- +...++.++.+.++.|..-|.+ .+|.|+
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDL 128 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDL 128 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechh
Confidence 99999999998754 4445677888888989888877 999998
No 261
>KOG3905|consensus
Probab=99.14 E-value=7.1e-10 Score=87.92 Aligned_cols=116 Identities=17% Similarity=0.274 Sum_probs=83.4
Q ss_pred ccChhhhcccccccCCCCCCCCCCCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeC--CeEE
Q psy1417 13 LYSPIRYVQGAREQIPTGRGKNGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVN--GEKV 90 (188)
Q Consensus 13 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~ 90 (188)
.||.+...-+++.+....+++ +|+|+|+.++|||||+.+|.+.+ .+.+..|.+|.+..+.-+ ....
T Consensus 33 lWs~iLsev~T~~~sklpsgk---------~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~t 100 (473)
T KOG3905|consen 33 LWSEILSEVSTRTRSKLPSGK---------NVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLT 100 (473)
T ss_pred HHHHHHHHhhhcccccCCCCC---------eEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhh
Confidence 344555555566665555555 89999999999999999997654 445666777766555432 2346
Q ss_pred EEEEEeCCCcccccccchhccccC----CEEEEEEeCCChhh-HHHHHHHHHHHH
Q psy1417 91 KLQIWDTAGQERFRTITSTYYRGT----HGVIVVYDVTSGET-FANVKRWLHEIE 140 (188)
Q Consensus 91 ~l~l~D~~g~~~~~~~~~~~~~~~----~~vilv~d~~~~~s-~~~~~~~~~~i~ 140 (188)
++.+|-..|+.....+....+... ..||++.|+++++. ++.++.|..-++
T Consensus 101 r~~VWiLDGd~~h~~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ 155 (473)
T KOG3905|consen 101 RCNVWILDGDLYHKGLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLR 155 (473)
T ss_pred hcceEEecCchhhhhHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHH
Confidence 789999999877777776666543 38999999999966 566788877655
No 262
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.13 E-value=5.2e-10 Score=94.28 Aligned_cols=112 Identities=17% Similarity=0.093 Sum_probs=70.8
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhC--CCC-----------------------------CCccceeeeeeEEEEEEeCCeE
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDN--TFS-----------------------------GSYITTIGVDFKIRTIDVNGEK 89 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~--~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~ 89 (188)
+++|+++|..++|||||+.+|+.. ... ++... |.........++...
T Consensus 7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~r--GiTid~~~~~~~~~~ 84 (446)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERER--GITIDIALWKFETPK 84 (446)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhc--CEeEEeeeEEEccCC
Confidence 349999999999999999999741 100 01111 112222222334445
Q ss_pred EEEEEEeCCCcccccccchhccccCCEEEEEEeCCChhh---H---HHHHHHHHHHHhhCCCce-EEE-EEcCCC
Q psy1417 90 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGET---F---ANVKRWLHEIENNCEVVN-RIL-GLRLGL 156 (188)
Q Consensus 90 ~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s---~---~~~~~~~~~i~~~~~~~p-ilv-gnK~Dl 156 (188)
..+++.|+||+.+|.......+..+|++++|+|++...- | ....+-+..+... ++| ++| .||+|.
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~--gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL--GVKQMIVCINKMDD 157 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc--CCCeEEEEEEcccc
Confidence 779999999999997777777889999999999886530 1 0111212222222 254 555 999995
No 263
>KOG1489|consensus
Probab=99.13 E-value=8.3e-10 Score=87.18 Aligned_cols=136 Identities=15% Similarity=0.165 Sum_probs=84.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCC-Cccc-eeeeeeEEEEEEeCCeEEEEEEEeCCCcccc----cc---cchhcccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSG-SYIT-TIGVDFKIRTIDVNGEKVKLQIWDTAGQERF----RT---ITSTYYRG 113 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~-~~~~-t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~----~~---~~~~~~~~ 113 (188)
.+-+||-+++|||||++.+...+... .|.- |+..... .+.+++ ...+.+-|.||--+- +. ..-..+++
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG--~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG--TVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccc--eeeccc-cceeEeccCccccccccccCcccHHHHHHHHh
Confidence 34599999999999999998765322 2221 2111111 222332 234899999984221 11 11223678
Q ss_pred CCEEEEEEeCCCh---hhHHHHHHHHHHHHhhC---CCceEEE-EEcCCCCCccchh-hhhhhcCCCCceEEeecc
Q psy1417 114 THGVIVVYDVTSG---ETFANVKRWLHEIENNC---EVVNRIL-GLRLGLNQRSIDE-VNLCHRGSVDGSVESTSV 181 (188)
Q Consensus 114 ~~~vilv~d~~~~---~s~~~~~~~~~~i~~~~---~~~pilv-gnK~Dl~~~~i~~-~~~~~~~~~~~~~e~~~~ 181 (188)
|+.+++|+|++.. ..++.++...+++..+. .+.|.+| +||+|+++.+-+. .+++...+-...+..+.+
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvsA~ 350 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVSAK 350 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEeeec
Confidence 9999999999988 77888887777777644 3467766 9999995333222 455555554444554444
No 264
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.11 E-value=3.3e-10 Score=99.44 Aligned_cols=110 Identities=20% Similarity=0.124 Sum_probs=66.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCC-CCC------------ccc--------------------eeeeeeEEEEEEeCCeE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTF-SGS------------YIT--------------------TIGVDFKIRTIDVNGEK 89 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~-~~~------------~~~--------------------t~~~~~~~~~~~~~~~~ 89 (188)
+|+++|..++|||||+++|+...- ... ... .+..+.....+.. ..
T Consensus 26 ~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~--~~ 103 (632)
T PRK05506 26 RFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT--PK 103 (632)
T ss_pred EEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc--CC
Confidence 899999999999999999985321 110 000 0111111122222 33
Q ss_pred EEEEEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 90 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 90 ~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
.++.++||||++.|.......+..+|++++|+|++....-+... .+..+... ...+++| .||+|+
T Consensus 104 ~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e-~~~~~~~~-~~~~iivvvNK~D~ 169 (632)
T PRK05506 104 RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR-HSFIASLL-GIRHVVLAVNKMDL 169 (632)
T ss_pred ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH-HHHHHHHh-CCCeEEEEEEeccc
Confidence 56889999999887654445578899999999997653221111 11122222 2245665 999998
No 265
>PTZ00416 elongation factor 2; Provisional
Probab=99.10 E-value=4.1e-10 Score=101.40 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=74.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCC-C---------------CccceeeeeeEEEEEEeC--------CeEEEEEEEeCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFS-G---------------SYITTIGVDFKIRTIDVN--------GEKVKLQIWDTA 98 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~-~---------------~~~~t~~~~~~~~~~~~~--------~~~~~l~l~D~~ 98 (188)
+|+++|..++|||||+.+|+...-. . +....+........+.++ +..+.+++.|||
T Consensus 21 ni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDtP 100 (836)
T PTZ00416 21 NMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSP 100 (836)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcCC
Confidence 9999999999999999999852210 0 000011111111122222 235779999999
Q ss_pred CcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 99 GQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 99 g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
|+.+|.......++.+|++++|+|+.+...-+...-| ..+.+. ++|+++ .||+|+.
T Consensus 101 G~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~~--~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 101 GHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQE--RIRPVLFINKVDRA 157 (836)
T ss_pred CHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHHc--CCCEEEEEEChhhh
Confidence 9998877778889999999999999886544443333 333332 367666 9999984
No 266
>PRK12740 elongation factor G; Reviewed
Probab=99.09 E-value=4.2e-10 Score=99.38 Aligned_cols=107 Identities=21% Similarity=0.212 Sum_probs=72.5
Q ss_pred EeCCCCCHHHHHHHHHhCCCC--------C----------CccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccch
Q psy1417 47 LQLVGVGKSSLLIRFSDNTFS--------G----------SYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITS 108 (188)
Q Consensus 47 vG~~~~GKssLi~~l~~~~~~--------~----------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~ 108 (188)
+|..++|||||+++|+...-. . +....+........+.+++ +.+++|||||+..+.....
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 589999999999999642210 0 0011122222333444444 7799999999988877777
Q ss_pred hccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC
Q psy1417 109 TYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 109 ~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~ 158 (188)
..++.+|++++|+|.+.........-|. .+... ++|+++ +||+|+..
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~~--~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVWR-QAEKY--GVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHHc--CCCEEEEEECCCCCC
Confidence 7889999999999999876665554443 33332 477766 99999843
No 267
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.08 E-value=1.5e-09 Score=84.85 Aligned_cols=110 Identities=19% Similarity=0.185 Sum_probs=62.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCC--cc-ceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccc---c-------ch
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGS--YI-TTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT---I-------TS 108 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~--~~-~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~---~-------~~ 108 (188)
++|+++|.+|||||||+|.+++...... +. .|.. ........++ ..+.++||||-..... . ..
T Consensus 32 ~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~--~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 32 LTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLR--VREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEE--EEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 3999999999999999999997653221 11 2222 2222333444 5689999999654310 1 11
Q ss_pred hccc--cCCEEEEEEeCCChh-hHHHHHHHHHHHHhhCC----CceEEEEEcCCC
Q psy1417 109 TYYR--GTHGVIVVYDVTSGE-TFANVKRWLHEIENNCE----VVNRILGLRLGL 156 (188)
Q Consensus 109 ~~~~--~~~~vilv~d~~~~~-s~~~~~~~~~~i~~~~~----~~pilvgnK~Dl 156 (188)
.+++ ..+++++|..++... .... ...+..+...++ ...++|.||+|.
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~ 161 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAAS 161 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCcc
Confidence 2232 467888887665421 2221 123333443222 123445999997
No 268
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.06 E-value=2.2e-09 Score=88.87 Aligned_cols=138 Identities=20% Similarity=0.213 Sum_probs=96.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC--CC---------C----CccceeeeeeEEEEEEe---CCeEEEEEEEeCCCccccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT--FS---------G----SYITTIGVDFKIRTIDV---NGEKVKLQIWDTAGQERFR 104 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~--~~---------~----~~~~t~~~~~~~~~~~~---~~~~~~l~l~D~~g~~~~~ 104 (188)
|+.++..-.-|||||..|++... .. + +....+..-.....+.+ +|..|.+++.||||+-.|.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 78999999999999999998421 11 0 11111221122233333 4688999999999999998
Q ss_pred ccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcCCCCCccchhh--hhhhcCCC--CceEEeec
Q psy1417 105 TITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQRSIDEV--NLCHRGSV--DGSVESTS 180 (188)
Q Consensus 105 ~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~Dl~~~~i~~~--~~~~~~~~--~~~~e~~~ 180 (188)
....+.+..|.+.++|+|+++....+.+...+..+.+.. -.|.|.||+||+...++.. ++.+..|+ ...+.+|.
T Consensus 91 YEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~L--eIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~SA 168 (603)
T COG0481 91 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNL--EIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLVSA 168 (603)
T ss_pred EEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCc--EEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeEec
Confidence 888888999999999999999988999998888887653 2233489999976665533 44444444 33355554
Q ss_pred cc
Q psy1417 181 VD 182 (188)
Q Consensus 181 ~~ 182 (188)
++
T Consensus 169 Kt 170 (603)
T COG0481 169 KT 170 (603)
T ss_pred cc
Confidence 43
No 269
>COG2262 HflX GTPases [General function prediction only]
Probab=99.05 E-value=9.8e-10 Score=89.53 Aligned_cols=116 Identities=17% Similarity=0.194 Sum_probs=77.3
Q ss_pred CcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCc---------ccccccc
Q psy1417 37 THIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQ---------ERFRTIT 107 (188)
Q Consensus 37 ~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~---------~~~~~~~ 107 (188)
...+ .|.++|-+++|||||+|.|.+.....+..-....+-..+.+.+.+ ...+.+-||.|- +.|+...
T Consensus 190 ~~~p--~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL 266 (411)
T COG2262 190 SGIP--LVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL 266 (411)
T ss_pred cCCC--eEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH
Confidence 4455 889999999999999999986554332222122233345555553 344777899882 2233333
Q ss_pred hhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhh-CCCceEEE-EEcCCC
Q psy1417 108 STYYRGTHGVIVVYDVTSGETFANVKRWLHEIENN-CEVVNRIL-GLRLGL 156 (188)
Q Consensus 108 ~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~-~~~~pilv-gnK~Dl 156 (188)
+. ...+|+++.|+|++++...+.+..-..-+... ...+|+++ .||+|+
T Consensus 267 EE-~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~ 316 (411)
T COG2262 267 EE-VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDL 316 (411)
T ss_pred HH-hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccc
Confidence 32 45699999999999997666666555555552 35589887 999996
No 270
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.03 E-value=7.2e-10 Score=98.69 Aligned_cols=111 Identities=17% Similarity=0.163 Sum_probs=73.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCC-C----------Ccc-------ceeeeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFS-G----------SYI-------TTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR 104 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~-~----------~~~-------~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~ 104 (188)
+|+++|..++|||||+.+|+...-. . ++. -|+........+.+++..+.+++.||||+..|.
T Consensus 22 ni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df~ 101 (731)
T PRK07560 22 NIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFG 101 (731)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccChH
Confidence 8999999999999999999842210 0 000 011111111112234456889999999999888
Q ss_pred ccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 105 TITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 105 ~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
......++.+|++++|+|+......+...-|... .+. +.|+++ .||+|+
T Consensus 102 ~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~-~~~--~~~~iv~iNK~D~ 151 (731)
T PRK07560 102 GDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQA-LRE--RVKPVLFINKVDR 151 (731)
T ss_pred HHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHH-HHc--CCCeEEEEECchh
Confidence 7777888999999999998876444433444332 222 244455 999997
No 271
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.02 E-value=3.3e-10 Score=77.92 Aligned_cols=123 Identities=20% Similarity=0.209 Sum_probs=82.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCc----ccccccchhccccCCEEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQ----ERFRTITSTYYRGTHGVI 118 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~----~~~~~~~~~~~~~~~~vi 118 (188)
||.+||..|+|||||.+.+.+... -|..|-..+|..+ -..||||. ..+....-....++++++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~~d~-----------~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEFNDK-----------GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccceeeccCc-----------cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 899999999999999999986654 3344544444322 13489984 222223334467899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcCCCC-Cccchhh-hhhhcCCCCceEEeecccc
Q psy1417 119 VVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLN-QRSIDEV-NLCHRGSVDGSVESTSVDY 183 (188)
Q Consensus 119 lv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~Dl~-~~~i~~~-~~~~~~~~~~~~e~~~~~~ 183 (188)
+|-.+++++|- +-+.+........|-|.+|.||. ...|+-. ++-.+.|....|+.++++.
T Consensus 70 ~v~~and~~s~-----f~p~f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~ 131 (148)
T COG4917 70 YVHAANDPESR-----FPPGFLDIGVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDN 131 (148)
T ss_pred eeecccCcccc-----CCcccccccccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCc
Confidence 99999998774 33333333333444459999995 5555543 5666778888899988763
No 272
>KOG1145|consensus
Probab=98.95 E-value=1.3e-08 Score=85.64 Aligned_cols=116 Identities=18% Similarity=0.230 Sum_probs=80.6
Q ss_pred CCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCC----ccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhcc
Q psy1417 36 PTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGS----YITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYY 111 (188)
Q Consensus 36 ~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~ 111 (188)
..+++ =+-++|.-.-|||||+..|-+...... -...+| .....++ .| -+++|.||||+..|..++.+--
T Consensus 150 ~~RpP--VVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIG--AF~V~~p-~G--~~iTFLDTPGHaAF~aMRaRGA 222 (683)
T KOG1145|consen 150 EPRPP--VVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIG--AFTVTLP-SG--KSITFLDTPGHAAFSAMRARGA 222 (683)
T ss_pred CCCCC--eEEEeecccCChhhHHHHHhhCceehhhcCCccceec--eEEEecC-CC--CEEEEecCCcHHHHHHHHhccC
Confidence 33555 678999999999999999975543211 112222 2223333 34 5689999999999999998888
Q ss_pred ccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCccchhh
Q psy1417 112 RGTHGVIVVYDVTSG---ETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSIDEV 164 (188)
Q Consensus 112 ~~~~~vilv~d~~~~---~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~~~ 164 (188)
+-+|++++|+.+.|. ++.+.++- . ..-++||+| .||+|.+...++..
T Consensus 223 ~vtDIvVLVVAadDGVmpQT~EaIkh----A--k~A~VpiVvAinKiDkp~a~pekv 273 (683)
T KOG1145|consen 223 NVTDIVVLVVAADDGVMPQTLEAIKH----A--KSANVPIVVAINKIDKPGANPEKV 273 (683)
T ss_pred ccccEEEEEEEccCCccHhHHHHHHH----H--HhcCCCEEEEEeccCCCCCCHHHH
Confidence 889999999998875 33333321 1 234599999 99999876655533
No 273
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.94 E-value=3.9e-09 Score=80.62 Aligned_cols=111 Identities=18% Similarity=0.108 Sum_probs=59.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCcc--ceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccc--------cc---h
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYI--TTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT--------IT---S 108 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~--------~~---~ 108 (188)
++|+++|.+|+||||++|.+++........ .............+++ ..+.++||||-..... +. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 389999999999999999999776433221 1111223333446677 5589999999322110 11 1
Q ss_pred hccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCC----CceEEEEEcCCC
Q psy1417 109 TYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE----VVNRILGLRLGL 156 (188)
Q Consensus 109 ~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~----~~pilvgnK~Dl 156 (188)
....+.|++++|+.+. +-+-+.. ..+..+.+.++ +-.|+|.|..|.
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~-~~l~~l~~~FG~~~~k~~ivvfT~~d~ 128 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDR-EVLELLQEIFGEEIWKHTIVVFTHADE 128 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHH-HHHHHHHHHHCGGGGGGEEEEEEEGGG
T ss_pred hccCCCeEEEEEEecC-cchHHHH-HHHHHHHHHccHHHHhHhhHHhhhccc
Confidence 1234689999999988 3222222 22233333222 234555777775
No 274
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.92 E-value=8.1e-09 Score=85.38 Aligned_cols=116 Identities=16% Similarity=0.211 Sum_probs=78.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC--CCCCC------------ccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccch
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN--TFSGS------------YITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITS 108 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~--~~~~~------------~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~ 108 (188)
||+|+-.-.-|||||+..|+.. .|.+. -...-|.....+...++...+.+++.||||+..|....+
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE 86 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE 86 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhh
Confidence 8999999999999999999843 23221 011123333333333334448899999999999999999
Q ss_pred hccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcCCCCCcc
Q psy1417 109 TYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQRS 160 (188)
Q Consensus 109 ~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~Dl~~~~ 160 (188)
+.+...|++++++|+.+.--= ....-+.... ...-.||+|.||+|.+...
T Consensus 87 Rvl~MVDgvlLlVDA~EGpMP-QTrFVlkKAl-~~gL~PIVVvNKiDrp~Ar 136 (603)
T COG1217 87 RVLSMVDGVLLLVDASEGPMP-QTRFVLKKAL-ALGLKPIVVINKIDRPDAR 136 (603)
T ss_pred hhhhhcceEEEEEEcccCCCC-chhhhHHHHH-HcCCCcEEEEeCCCCCCCC
Confidence 999999999999999874211 1111111111 2233789999999995443
No 275
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.91 E-value=1.3e-08 Score=78.46 Aligned_cols=103 Identities=15% Similarity=0.187 Sum_probs=62.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
.|+++|.+|+|||||++.+....-........| .+. .... ...++.++|+||.. .... ...+.+|++++++|
T Consensus 41 ~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i~--i~~~--~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllviD 112 (225)
T cd01882 41 VVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PIT--VVTG--KKRRLTFIECPNDI--NAMI-DIAKVADLVLLLID 112 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccCccccccc-cEE--EEec--CCceEEEEeCCchH--HHHH-HHHHhcCEEEEEEe
Confidence 789999999999999999975421111111112 111 1112 34568899999854 2222 23578999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhCCCce-EE-EEEcCCC
Q psy1417 123 VTSGETFANVKRWLHEIENNCEVVN-RI-LGLRLGL 156 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~~~~~p-il-vgnK~Dl 156 (188)
.+....... ...+..+.... .| ++ |.||.|+
T Consensus 113 a~~~~~~~~-~~i~~~l~~~g--~p~vi~VvnK~D~ 145 (225)
T cd01882 113 ASFGFEMET-FEFLNILQVHG--FPRVMGVLTHLDL 145 (225)
T ss_pred cCcCCCHHH-HHHHHHHHHcC--CCeEEEEEecccc
Confidence 886443322 22333333332 44 45 5999998
No 276
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.90 E-value=1.1e-08 Score=82.58 Aligned_cols=81 Identities=17% Similarity=0.232 Sum_probs=55.4
Q ss_pred EEEEeCCCCCHHHHHHHHHhCCCC------CCccceeeeeeEEEE---------------EEeCC-eEEEEEEEeCCCc-
Q psy1417 44 SSFLQLVGVGKSSLLIRFSDNTFS------GSYITTIGVDFKIRT---------------IDVNG-EKVKLQIWDTAGQ- 100 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~~~~~~------~~~~~t~~~~~~~~~---------------~~~~~-~~~~l~l~D~~g~- 100 (188)
|.++|.++||||||++++.+.... ....|++|..+.... ...++ ..+.+++||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999977642 123455554332111 01223 3477999999997
Q ss_pred ---ccccccchh---ccccCCEEEEEEeCC
Q psy1417 101 ---ERFRTITST---YYRGTHGVIVVYDVT 124 (188)
Q Consensus 101 ---~~~~~~~~~---~~~~~~~vilv~d~~ 124 (188)
.++..+... .++.+|++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 444444334 388999999999997
No 277
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.88 E-value=1.6e-08 Score=85.37 Aligned_cols=95 Identities=15% Similarity=0.333 Sum_probs=71.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeC--CeEEEEEEEeCCCcccccccchhccccC----CE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVN--GEKVKLQIWDTAGQERFRTITSTYYRGT----HG 116 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~l~l~D~~g~~~~~~~~~~~~~~~----~~ 116 (188)
.|+|+|+.++|||||+.+|.+. +++.++.+.+|....+.-+ ....++.+|...|...+..+.+..+... -+
T Consensus 27 ~vlvlG~~~~GKttli~~L~~~---e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~ 103 (472)
T PF05783_consen 27 SVLVLGDKGSGKTTLIARLQGI---EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTL 103 (472)
T ss_pred eEEEEeCCCCchHHHHHHhhcc---CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceE
Confidence 8899999999999999998653 3456788888877665433 2335789999988777777777666543 38
Q ss_pred EEEEEeCCChhhH-HHHHHHHHHHH
Q psy1417 117 VIVVYDVTSGETF-ANVKRWLHEIE 140 (188)
Q Consensus 117 vilv~d~~~~~s~-~~~~~~~~~i~ 140 (188)
||+|.|.+.++.+ +.+..|+..++
T Consensus 104 vvIvlDlS~PW~~~esL~~W~~vl~ 128 (472)
T PF05783_consen 104 VVIVLDLSKPWNIMESLEKWLSVLR 128 (472)
T ss_pred EEEEecCCChHHHHHHHHHHHHHHH
Confidence 9999999999874 45667766654
No 278
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=3e-08 Score=83.30 Aligned_cols=114 Identities=16% Similarity=0.185 Sum_probs=77.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeC-CeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVN-GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
=+.++|.-.-|||||+..+-..+....-.-.+.-...-..+..+ +..-.+.|.||||++.|..++.+=.+-+|+++||+
T Consensus 7 vVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVV 86 (509)
T COG0532 7 VVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVV 86 (509)
T ss_pred EEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEE
Confidence 67999999999999999997665433211111111222233332 12235899999999999999988888899999999
Q ss_pred eCCCh---hhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCccch
Q psy1417 122 DVTSG---ETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSID 162 (188)
Q Consensus 122 d~~~~---~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~ 162 (188)
++++. ++.+.+. .++ .-++|++| .||+|..+..+.
T Consensus 87 a~dDGv~pQTiEAI~----hak--~a~vP~iVAiNKiDk~~~np~ 125 (509)
T COG0532 87 AADDGVMPQTIEAIN----HAK--AAGVPIVVAINKIDKPEANPD 125 (509)
T ss_pred EccCCcchhHHHHHH----HHH--HCCCCEEEEEecccCCCCCHH
Confidence 99985 3333322 222 23499999 999999654444
No 279
>KOG1191|consensus
Probab=98.87 E-value=7.1e-09 Score=86.14 Aligned_cols=112 Identities=24% Similarity=0.204 Sum_probs=69.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCC-CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccc-cccc--------chhccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFS-GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER-FRTI--------TSTYYR 112 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-~~~~--------~~~~~~ 112 (188)
+|+++|+++||||||+|.|.+.+.. ....|....+.-...++++| +++.+.||.|-.+ -... -...++
T Consensus 270 ~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~ 347 (531)
T KOG1191|consen 270 QIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARKRIE 347 (531)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHHHHh
Confidence 9999999999999999999866522 12222222233444556666 6789999999543 1111 123367
Q ss_pred cCCEEEEEEeCCChh--hHHHHHHHHHHHHhhC-------CCceEEE-EEcCCC
Q psy1417 113 GTHGVIVVYDVTSGE--TFANVKRWLHEIENNC-------EVVNRIL-GLRLGL 156 (188)
Q Consensus 113 ~~~~vilv~d~~~~~--s~~~~~~~~~~i~~~~-------~~~pilv-gnK~Dl 156 (188)
.+|++++|+|+...+ +-..+...+......+ ...++++ .||+|+
T Consensus 348 ~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~ 401 (531)
T KOG1191|consen 348 RADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDL 401 (531)
T ss_pred hcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhc
Confidence 799999999994432 2222233333333211 1246666 999998
No 280
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.84 E-value=3.2e-08 Score=79.10 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=68.7
Q ss_pred EEEeCCCCCHHHHHHHHHhCCCC-CCccc-eeeeeeEEEEEEeCCeEEEEEEEeCCCcccc-------cccchhccccCC
Q psy1417 45 SFLQLVGVGKSSLLIRFSDNTFS-GSYIT-TIGVDFKIRTIDVNGEKVKLQIWDTAGQERF-------RTITSTYYRGTH 115 (188)
Q Consensus 45 ~vvG~~~~GKssLi~~l~~~~~~-~~~~~-t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~-------~~~~~~~~~~~~ 115 (188)
-+||.+++|||||++.+...+.- ..|.- |+-.+..+..+ ...-.+.+-|.||--+- -...-..++++.
T Consensus 163 GLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 163 GLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 38999999999999999876532 23332 22222222222 22344889999983211 111122367899
Q ss_pred EEEEEEeCCChhh---HHHHHHHHHHHHhhC---CCceEEE-EEcCCC
Q psy1417 116 GVIVVYDVTSGET---FANVKRWLHEIENNC---EVVNRIL-GLRLGL 156 (188)
Q Consensus 116 ~vilv~d~~~~~s---~~~~~~~~~~i~~~~---~~~pilv-gnK~Dl 156 (188)
+++.|+|++..+. .+..+....++.++. .+.|.+| .||+|+
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~ 287 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDL 287 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCC
Confidence 9999999986543 566666666666654 3467666 999996
No 281
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=2.5e-08 Score=87.62 Aligned_cols=116 Identities=20% Similarity=0.224 Sum_probs=83.0
Q ss_pred CCcccceeEEEEeCCCCCHHHHHHHHHhCC--CCC--Cc------------cceeeeeeEEEEEEeCCe-EEEEEEEeCC
Q psy1417 36 PTHIFSQKSSFLQLVGVGKSSLLIRFSDNT--FSG--SY------------ITTIGVDFKIRTIDVNGE-KVKLQIWDTA 98 (188)
Q Consensus 36 ~~~~~~~ki~vvG~~~~GKssLi~~l~~~~--~~~--~~------------~~t~~~~~~~~~~~~~~~-~~~l~l~D~~ 98 (188)
..+.. ||.++|+-++|||||..+++... ... +. ...-|........+...+ .+.+++.|||
T Consensus 7 ~~~~R--NigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTP 84 (697)
T COG0480 7 LERIR--NIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTP 84 (697)
T ss_pred cccce--EEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCC
Confidence 34455 99999999999999999998321 110 00 001222333333333333 5889999999
Q ss_pred CcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 99 GQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 99 g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
|+-.|.......++-+|+.++|+|+......+.-.-|....... +|.++ .||.|.
T Consensus 85 GHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~---vp~i~fiNKmDR 140 (697)
T COG0480 85 GHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYG---VPRILFVNKMDR 140 (697)
T ss_pred CccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcC---CCeEEEEECccc
Confidence 99999999999999999999999999887777767775544433 77666 999997
No 282
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.82 E-value=3.9e-08 Score=81.72 Aligned_cols=83 Identities=19% Similarity=0.282 Sum_probs=54.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCC-Cc-----cceeeeeeEEEEE---------------EeCC-eEEEEEEEeCCC
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSG-SY-----ITTIGVDFKIRTI---------------DVNG-EKVKLQIWDTAG 99 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~-~~-----~~t~~~~~~~~~~---------------~~~~-~~~~l~l~D~~g 99 (188)
+||.++|.++||||||+++|.+..... .| .|++|.-+....+ ..++ ....+++||++|
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 399999999999999999999776532 22 2444432211000 0111 236789999999
Q ss_pred c----ccccccchhc---cccCCEEEEEEeCC
Q psy1417 100 Q----ERFRTITSTY---YRGTHGVIVVYDVT 124 (188)
Q Consensus 100 ~----~~~~~~~~~~---~~~~~~vilv~d~~ 124 (188)
. .....+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 2333333344 78899999999997
No 283
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.81 E-value=7.9e-08 Score=70.28 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=42.4
Q ss_pred EEEEEeCCCccc----ccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcC
Q psy1417 91 KLQIWDTAGQER----FRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRL 154 (188)
Q Consensus 91 ~l~l~D~~g~~~----~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~ 154 (188)
.+.|+|+||-.. .......++..+|++++|.+.+...+-.....+.......... .++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~-~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSR-TIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSS-EEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCe-EEEEEcCC
Confidence 368899999532 2355667789999999999999866655555665555544433 45557874
No 284
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=4.2e-08 Score=80.20 Aligned_cols=116 Identities=20% Similarity=0.215 Sum_probs=71.3
Q ss_pred cceeEEEEeCCCCCHHHHHHHHHhC--CCCC--------C--------------ccc-----eeeeeeEEEEEEeCCeEE
Q psy1417 40 FSQKSSFLQLVGVGKSSLLIRFSDN--TFSG--------S--------------YIT-----TIGVDFKIRTIDVNGEKV 90 (188)
Q Consensus 40 ~~~ki~vvG~~~~GKssLi~~l~~~--~~~~--------~--------------~~~-----t~~~~~~~~~~~~~~~~~ 90 (188)
.+++++++|+..+|||||+-||+.. .+.+ + .+. --|.........++...+
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 3559999999999999999999842 1111 0 000 012223333334445567
Q ss_pred EEEEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHH------HHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 91 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANV------KRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 91 ~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~------~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
.+++.|+||+..|....-.-...||+.|||+|+.+.+ |+.- ..-...+.+...---++| .||.|+
T Consensus 86 ~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~e-fE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~ 157 (428)
T COG5256 86 NFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGE-FEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDL 157 (428)
T ss_pred eEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCc-cccccccCCchhHHHHHHHhcCCceEEEEEEcccc
Confidence 8999999998877644444567799999999998764 2221 111112222222223455 999998
No 285
>KOG0468|consensus
Probab=98.78 E-value=3.7e-08 Score=84.56 Aligned_cols=116 Identities=23% Similarity=0.347 Sum_probs=81.2
Q ss_pred CCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCC---------ccce------eeeeeEEEEE-----EeCCeEEEEEEE
Q psy1417 36 PTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGS---------YITT------IGVDFKIRTI-----DVNGEKVKLQIW 95 (188)
Q Consensus 36 ~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~---------~~~t------~~~~~~~~~~-----~~~~~~~~l~l~ 95 (188)
+.++. ++.++|.-..|||+|...|.....++- |..+ -|......-. ..+++.+-+++.
T Consensus 125 p~~ir--nV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 125 PERIR--NVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred cceEE--EEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 44455 999999999999999999986543322 1111 1111111111 125778899999
Q ss_pred eCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 96 DTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 96 D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
||||+.+|.......++.+|++++|+|+.+...+..-.-..+.+. .+.|+++ .||.|.
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq---~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ---NRLPIVVVINKVDR 261 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh---ccCcEEEEEehhHH
Confidence 999999999888888999999999999998877654333222222 2378877 999996
No 286
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.76 E-value=1.2e-07 Score=75.34 Aligned_cols=112 Identities=16% Similarity=0.199 Sum_probs=63.4
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCCCCCCc----------cceeeeeeEEEEEEeCCeEEEEEEEeCCCccc--------
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGSY----------ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER-------- 102 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-------- 102 (188)
+++|+|+|..|+|||||++.|++....... .++.........+.-++..+.++++||||-..
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 469999999999999999999976543321 12333333344555578889999999998211
Q ss_pred ----------c--------cccchhcc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 103 ----------F--------RTITSTYY--RGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 103 ----------~--------~~~~~~~~--~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
| ...+ ... .+.|++++.++.+.. .+..+. +..+.+..+.+++|- ..|.|.
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R-~~~~D~RVH~cLYfI~pt~~-~L~~~D--i~~mk~Ls~~vNvIPvIaKaD~ 154 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINR-PRIEDTRVHACLYFIPPTGH-GLKPLD--IEFMKRLSKRVNVIPVIAKADT 154 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS--TTS----EEEEEEEE-TTSS-SS-HHH--HHHHHHHTTTSEEEEEESTGGG
T ss_pred HHHHHHHHHHHHHHHHHhhcccc-cCcCCCCcceEEEEEcCCCc-cchHHH--HHHHHHhcccccEEeEEecccc
Confidence 0 0000 001 135799999887643 122222 223333444455554 889996
No 287
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.75 E-value=1.4e-07 Score=81.68 Aligned_cols=113 Identities=20% Similarity=0.130 Sum_probs=67.0
Q ss_pred cceeEEEEeCCCCCHHHHHHHHHhCCC-CCCc--cceeeeeeEEEEEEeCCeEEEEEEEeCCCccccc-------cc---
Q psy1417 40 FSQKSSFLQLVGVGKSSLLIRFSDNTF-SGSY--ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR-------TI--- 106 (188)
Q Consensus 40 ~~~ki~vvG~~~~GKssLi~~l~~~~~-~~~~--~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-------~~--- 106 (188)
+.++|+++|.+|+||||++|.+++... .... ..|.. ........++ ..+.++||||-.... .+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr--~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~ 192 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS--VQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSS 192 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE--EEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHH
Confidence 445999999999999999999997653 2221 11111 1112223344 568999999965431 11
Q ss_pred chhccc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCC----ceEEEEEcCCC
Q psy1417 107 TSTYYR--GTHGVIVVYDVTSGETFANVKRWLHEIENNCEV----VNRILGLRLGL 156 (188)
Q Consensus 107 ~~~~~~--~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~----~pilvgnK~Dl 156 (188)
...++. ..|+|++|..++.......-..++..+.+.+.. -.|||.|+.|.
T Consensus 193 Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~ 248 (763)
T TIGR00993 193 VKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAAS 248 (763)
T ss_pred HHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCcc
Confidence 111233 478999999876433222223456666654432 34555888886
No 288
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.73 E-value=1.1e-07 Score=75.66 Aligned_cols=93 Identities=20% Similarity=0.251 Sum_probs=61.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCC-CccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccc-------cccchhccccC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSG-SYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERF-------RTITSTYYRGT 114 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~-------~~~~~~~~~~~ 114 (188)
.+++||.++||||||++.|.+.+... +|.-| ..+...-.+.+++ .++++.|+||--.- ....-...+.|
T Consensus 65 ~v~lVGfPsvGKStLL~~LTnt~seva~y~FT-Tl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~A 141 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLTNTKSEVADYPFT-TLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARNA 141 (365)
T ss_pred EEEEEcCCCccHHHHHHHHhCCCccccccCce-ecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeeccC
Confidence 78999999999999999998765433 23222 1122223445555 67999999973211 12223457889
Q ss_pred CEEEEEEeCCChhh-HHHHHHHHHH
Q psy1417 115 HGVIVVYDVTSGET-FANVKRWLHE 138 (188)
Q Consensus 115 ~~vilv~d~~~~~s-~~~~~~~~~~ 138 (188)
|++++|.|+..... .+.+.+.++.
T Consensus 142 DlIiiVld~~~~~~~~~~i~~ELe~ 166 (365)
T COG1163 142 DLIIIVLDVFEDPHHRDIIERELED 166 (365)
T ss_pred CEEEEEEecCCChhHHHHHHHHHHh
Confidence 99999999997665 5455554444
No 289
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.73 E-value=4.6e-08 Score=82.63 Aligned_cols=117 Identities=13% Similarity=0.109 Sum_probs=69.6
Q ss_pred ccceeEEEEeCCCCCHHHHHHHHHhCC---CCCCc--cceeeeeeEEEEE-------------EeCC-------------
Q psy1417 39 IFSQKSSFLQLVGVGKSSLLIRFSDNT---FSGSY--ITTIGVDFKIRTI-------------DVNG------------- 87 (188)
Q Consensus 39 ~~~~ki~vvG~~~~GKssLi~~l~~~~---~~~~~--~~t~~~~~~~~~~-------------~~~~------------- 87 (188)
..+++|.++|.-..|||||++.|.+-. +.++- .-|+..-|..... ....
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 445699999999999999999998532 22221 1122221211100 0000
Q ss_pred ---eEEEEEEEeCCCcccccccchhccccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 88 ---EKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGE-TFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 88 ---~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
....+.+.|+||++.|....-..+..+|++++|+|+++.. .-+.. +.+..+ ......+++| .||+|+.
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl~i~-~~lgi~~iIVvlNKiDlv 184 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHLAAV-EIMKLKHIIILQNKIDLV 184 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHHHHH-HHcCCCcEEEEEeccccc
Confidence 0236899999999988655555577899999999998741 22222 222222 2222245555 9999983
No 290
>KOG3887|consensus
Probab=98.72 E-value=2.4e-08 Score=76.40 Aligned_cols=111 Identities=18% Similarity=0.193 Sum_probs=75.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEE--EEEEeCCeEEEEEEEeCCCccccc---ccchhccccCCEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKI--RTIDVNGEKVKLQIWDTAGQERFR---TITSTYYRGTHGV 117 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~l~l~D~~g~~~~~---~~~~~~~~~~~~v 117 (188)
+|+++|...+||||+.+....+..+.+ |.-.+... ..-.+.+..+.+.+||.||+..+- .-.++.++.+.++
T Consensus 29 ~ilLMG~rRsGKsSI~KVVFhkMsPne---TlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 29 RILLMGLRRSGKSSIQKVVFHKMSPNE---TLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred eEEEEeecccCcchhhheeeeccCCCc---eeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 789999999999999998876554332 22222111 111233456789999999996552 2246678999999
Q ss_pred EEEEeCCCh--hhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 118 IVVYDVTSG--ETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 118 ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
++|+|+.+. +.+..+........+-.|++.+-| ..|.|-
T Consensus 106 ifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDG 147 (347)
T KOG3887|consen 106 IFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDG 147 (347)
T ss_pred EEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccC
Confidence 999998764 333334444444555668888878 999995
No 291
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.69 E-value=8.3e-08 Score=87.59 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=46.5
Q ss_pred EEEEeCCCcccccccchhccccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 92 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTS---GETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 92 l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~---~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
+.+|||||++.|..+....+..+|++++|+|+++ +++++.+.. +... ++|+++ +||+|+
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~----lk~~--~iPiIVViNKiDL 590 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINI----LRQY--KTPFVVAANKIDL 590 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHH----HHHc--CCCEEEEEECCCC
Confidence 8999999999998877777888999999999986 455555442 2222 478777 999998
No 292
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=2e-07 Score=76.74 Aligned_cols=126 Identities=13% Similarity=0.164 Sum_probs=82.2
Q ss_pred eEEEEeCCCCCHHHHHHHHH--hCCCCC--------------------CccceeeeeeEEEEEEeCCeEEEEEEEeCCCc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFS--DNTFSG--------------------SYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQ 100 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~--~~~~~~--------------------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 100 (188)
.++||-.+.+|||||...|+ ++.... +... |....+-.+.++-....+++.||||+
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqR--GISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQR--GISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhc--CceEEeeEEEeccCCeEEeccCCCCc
Confidence 56999999999999999987 221110 1112 33333333444444577999999999
Q ss_pred ccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCccchhh--hhhhcCCCC
Q psy1417 101 ERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSIDEV--NLCHRGSVD 173 (188)
Q Consensus 101 ~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~~~--~~~~~~~~~ 173 (188)
+.|..-..+.+..+|..++|+|+.....-+.++ .++-.+ ..++||+- .||.|.+.+..-+- ++..+.++.
T Consensus 92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~K-LfeVcr--lR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~ 164 (528)
T COG4108 92 EDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLK-LFEVCR--LRDIPIFTFINKLDREGRDPLELLDEIEEELGIQ 164 (528)
T ss_pred cccchhHHHHHHhhheeeEEEecccCccHHHHH-HHHHHh--hcCCceEEEeeccccccCChHHHHHHHHHHhCcc
Confidence 999988888899999999999988754333332 222222 23599998 99999855433221 444444443
No 293
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.66 E-value=2.5e-08 Score=81.67 Aligned_cols=108 Identities=13% Similarity=0.095 Sum_probs=51.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeee---eeEEEEEEeCCeEEEEEEEeCCCcccccccchh-----cccc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGV---DFKIRTIDVNGEKVKLQIWDTAGQERFRTITST-----YYRG 113 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~-----~~~~ 113 (188)
++|+|+|++|+|||||||.|.+-...++.....|. ........... .=.+.+||.||-......... -+..
T Consensus 36 l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~ 114 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVKFYR 114 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHccccc
Confidence 49999999999999999999643222221111111 11111221111 113899999985433222222 2556
Q ss_pred CCEEEEEEeCCChhhHHHHHHH-HHHHHhhCCCceEE-EEEcCCC
Q psy1417 114 THGVIVVYDVTSGETFANVKRW-LHEIENNCEVVNRI-LGLRLGL 156 (188)
Q Consensus 114 ~~~vilv~d~~~~~s~~~~~~~-~~~i~~~~~~~pil-vgnK~Dl 156 (188)
-|.+|++.+-. |....-| ...+.+.. .|+. |-+|+|.
T Consensus 115 yD~fiii~s~r----f~~ndv~La~~i~~~g--K~fyfVRTKvD~ 153 (376)
T PF05049_consen 115 YDFFIIISSER----FTENDVQLAKEIQRMG--KKFYFVRTKVDS 153 (376)
T ss_dssp -SEEEEEESSS------HHHHHHHHHHHHTT---EEEEEE--HHH
T ss_pred cCEEEEEeCCC----CchhhHHHHHHHHHcC--CcEEEEEecccc
Confidence 78888876533 4333322 33344332 5554 4999995
No 294
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.66 E-value=2.2e-07 Score=75.90 Aligned_cols=83 Identities=16% Similarity=0.186 Sum_probs=62.2
Q ss_pred cceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEeCCCh----------hhHHHHHHHHHHHH
Q psy1417 71 ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSG----------ETFANVKRWLHEIE 140 (188)
Q Consensus 71 ~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~----------~s~~~~~~~~~~i~ 140 (188)
.||.|.. ...+.+++ +.+.+||++|+...+..|..++.+++++++|+|+++- ..+++....++.+.
T Consensus 169 ~~T~Gi~--~~~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~ 244 (342)
T smart00275 169 VPTTGIQ--ETAFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESIC 244 (342)
T ss_pred CCccceE--EEEEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHH
Confidence 3555533 33444544 6689999999999999999999999999999999962 34666555556655
Q ss_pred h--hCCCceEEE-EEcCCCC
Q psy1417 141 N--NCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 141 ~--~~~~~pilv-gnK~Dl~ 157 (188)
+ ...++|++| +||.|+-
T Consensus 245 ~~~~~~~~piil~~NK~D~~ 264 (342)
T smart00275 245 NSRWFANTSIILFLNKIDLF 264 (342)
T ss_pred cCccccCCcEEEEEecHHhH
Confidence 5 336689988 9999983
No 295
>KOG1490|consensus
Probab=98.62 E-value=4.2e-08 Score=81.85 Aligned_cols=137 Identities=17% Similarity=0.107 Sum_probs=83.9
Q ss_pred ecccChhhhcccccccCCCCCCCCCCCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEe---CC
Q psy1417 11 KELYSPIRYVQGAREQIPTGRGKNGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDV---NG 87 (188)
Q Consensus 11 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~ 87 (188)
.++.+++.|....+...........+.+ .++++|-++||||||++.+........+-+. ..+.+-+ +-
T Consensus 142 k~q~~sl~yLeqVrqhl~rlPsIDp~tr----TlllcG~PNVGKSSf~~~vtradvevqpYaF-----TTksL~vGH~dy 212 (620)
T KOG1490|consen 142 KRQKSSLEYLEQVRQHLSRLPAIDPNTR----TLLVCGYPNVGKSSFNNKVTRADDEVQPYAF-----TTKLLLVGHLDY 212 (620)
T ss_pred HHhcchHHHHHHHHHHHhcCCCCCCCcC----eEEEecCCCCCcHhhcccccccccccCCccc-----ccchhhhhhhhh
Confidence 3445566665545555444444455555 5599999999999999998866543322121 1112211 22
Q ss_pred eEEEEEEEeCCCccccc----ccchh--cccc---CCEEEEEEeCCChh--hHHHHHHHHHHHHhhCCCceEEE-EEcCC
Q psy1417 88 EKVKLQIWDTAGQERFR----TITST--YYRG---THGVIVVYDVTSGE--TFANVKRWLHEIENNCEVVNRIL-GLRLG 155 (188)
Q Consensus 88 ~~~~l~l~D~~g~~~~~----~~~~~--~~~~---~~~vilv~d~~~~~--s~~~~~~~~~~i~~~~~~~pilv-gnK~D 155 (188)
.-..+++.||||--... ...++ ...- -.+|+++.|++... |....-+.++.|.-.+.+.|.|+ .||+|
T Consensus 213 kYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D 292 (620)
T KOG1490|consen 213 KYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKID 292 (620)
T ss_pred heeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeeccc
Confidence 22456777999942221 11111 1111 24899999999754 56666678888988888887766 99999
Q ss_pred C
Q psy1417 156 L 156 (188)
Q Consensus 156 l 156 (188)
+
T Consensus 293 ~ 293 (620)
T KOG1490|consen 293 A 293 (620)
T ss_pred c
Confidence 7
No 296
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.61 E-value=9.8e-08 Score=68.18 Aligned_cols=54 Identities=22% Similarity=0.239 Sum_probs=38.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQ 100 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 100 (188)
+++++|.+|+|||||+|++.+..... .....|.+.....+.+++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 88999999999999999999776532 223334334444454543 4789999984
No 297
>KOG0082|consensus
Probab=98.58 E-value=7.9e-07 Score=72.12 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=50.6
Q ss_pred EEEEEEeCCCcccccccchhccccCCEEEEEEeCCChh----------hHHHHHHHHHHHHh--hCCCceEEE-EEcCCC
Q psy1417 90 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGE----------TFANVKRWLHEIEN--NCEVVNRIL-GLRLGL 156 (188)
Q Consensus 90 ~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~----------s~~~~~~~~~~i~~--~~~~~pilv-gnK~Dl 156 (188)
..+.++|++||..-+..|-+++.+.++|+||+++++-+ .+.+....++.+-+ -+.+.++++ .||.|+
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL 274 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence 67899999999888888999999999999999988521 12222233344443 225688888 999999
Q ss_pred CCc
Q psy1417 157 NQR 159 (188)
Q Consensus 157 ~~~ 159 (188)
-+.
T Consensus 275 FeE 277 (354)
T KOG0082|consen 275 FEE 277 (354)
T ss_pred HHH
Confidence 433
No 298
>PTZ00258 GTP-binding protein; Provisional
Probab=98.56 E-value=7e-07 Score=73.82 Aligned_cols=80 Identities=23% Similarity=0.260 Sum_probs=49.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccc--eeeeeeEEEEEEeCCe---------------EEEEEEEeCCCccccc-
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYIT--TIGVDFKIRTIDVNGE---------------KVKLQIWDTAGQERFR- 104 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~---------------~~~l~l~D~~g~~~~~- 104 (188)
+|.++|.++||||||++.|.+.......-| |+..+.. .+.+.+. ..++.+.|+||-..-.
T Consensus 23 kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g--~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~ 100 (390)
T PTZ00258 23 KMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTA--RVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGAS 100 (390)
T ss_pred EEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEE--EEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCc
Confidence 999999999999999999976553322112 2222222 2222211 2358999999943211
Q ss_pred ---cc---chhccccCCEEEEEEeCC
Q psy1417 105 ---TI---TSTYYRGTHGVIVVYDVT 124 (188)
Q Consensus 105 ---~~---~~~~~~~~~~vilv~d~~ 124 (188)
.+ .-..++.+|++++|+|..
T Consensus 101 ~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 101 EGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred chhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 11 112357899999999974
No 299
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.52 E-value=1.3e-06 Score=67.90 Aligned_cols=66 Identities=12% Similarity=0.192 Sum_probs=39.5
Q ss_pred EEEEEEeCCCcccc-------------cccchhccc-cCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEE-EEEcC
Q psy1417 90 VKLQIWDTAGQERF-------------RTITSTYYR-GTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRI-LGLRL 154 (188)
Q Consensus 90 ~~l~l~D~~g~~~~-------------~~~~~~~~~-~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pil-vgnK~ 154 (188)
..+.+.|+||-... ..+...|++ ..+++++|+|++..-.-.........+... ..+++ |.||.
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~--~~rti~ViTK~ 202 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQ--GERTIGVITKL 202 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHc--CCcEEEEEECC
Confidence 45788999996321 123445566 455899999887543322333344444433 36666 49999
Q ss_pred CCC
Q psy1417 155 GLN 157 (188)
Q Consensus 155 Dl~ 157 (188)
|..
T Consensus 203 D~~ 205 (240)
T smart00053 203 DLM 205 (240)
T ss_pred CCC
Confidence 983
No 300
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.50 E-value=2.4e-07 Score=73.27 Aligned_cols=79 Identities=19% Similarity=0.192 Sum_probs=48.5
Q ss_pred EEEEeCCCCCHHHHHHHHHhCCCCCCcc--ceeeeeeEEEEEEeCCe---------------EEEEEEEeCCCccccc--
Q psy1417 44 SSFLQLVGVGKSSLLIRFSDNTFSGSYI--TTIGVDFKIRTIDVNGE---------------KVKLQIWDTAGQERFR-- 104 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~---------------~~~l~l~D~~g~~~~~-- 104 (188)
|.++|.++||||||++.+.+.+.....- .|+..... .+.+.+. ...+.++|+||-..-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g--~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVG--IVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceee--eEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 4789999999999999998766432211 23222222 2222221 2358999999943211
Q ss_pred --cc---chhccccCCEEEEEEeCC
Q psy1417 105 --TI---TSTYYRGTHGVIVVYDVT 124 (188)
Q Consensus 105 --~~---~~~~~~~~~~vilv~d~~ 124 (188)
.+ .-..++.+|+++.|+|+.
T Consensus 79 ~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 79 GEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 11 112256799999999864
No 301
>PRK13768 GTPase; Provisional
Probab=98.49 E-value=2.1e-07 Score=73.04 Aligned_cols=66 Identities=18% Similarity=0.094 Sum_probs=39.9
Q ss_pred EEEEEeCCCcccc---cccchhccc---c--CCEEEEEEeCCChhhHHHH--HHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 91 KLQIWDTAGQERF---RTITSTYYR---G--THGVIVVYDVTSGETFANV--KRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 91 ~l~l~D~~g~~~~---~~~~~~~~~---~--~~~vilv~d~~~~~s~~~~--~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
.+.+||+||+.+. +.....+++ . .+++++++|+....+.... ..|+........+.|+++ .||+|+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~ 174 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL 174 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh
Confidence 5899999997653 233322222 2 7899999999764433332 233333332223466665 999998
No 302
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.48 E-value=8.5e-07 Score=72.62 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=50.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCC-c-cceeeeeeEEEEEEeCCe---------------EEEEEEEeCCCccccc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGS-Y-ITTIGVDFKIRTIDVNGE---------------KVKLQIWDTAGQERFR 104 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~-~-~~t~~~~~~~~~~~~~~~---------------~~~l~l~D~~g~~~~~ 104 (188)
.+|.++|.++||||||++.+.+...... | ..|+..... .+.+.+. ...+.+.|+||-..-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G--~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVG--VVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEE--EEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 3899999999999999999987653221 1 123222222 2222221 1358999999943211
Q ss_pred ----cc---chhccccCCEEEEEEeCC
Q psy1417 105 ----TI---TSTYYRGTHGVIVVYDVT 124 (188)
Q Consensus 105 ----~~---~~~~~~~~~~vilv~d~~ 124 (188)
.+ .-..++.+|++++|+|+.
T Consensus 81 ~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11 112367899999999984
No 303
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.46 E-value=7.3e-07 Score=69.63 Aligned_cols=79 Identities=14% Similarity=0.245 Sum_probs=56.0
Q ss_pred ccccccchhccccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhCCCceEEE-EEcCCC-CCccchhh--hhhhcCCCCce
Q psy1417 101 ERFRTITSTYYRGTHGVIVVYDVTSGE-TFANVKRWLHEIENNCEVVNRIL-GLRLGL-NQRSIDEV--NLCHRGSVDGS 175 (188)
Q Consensus 101 ~~~~~~~~~~~~~~~~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl-~~~~i~~~--~~~~~~~~~~~ 175 (188)
+++..+.+.+++++|++++|||++++. +++.+..|+..+.. .++|+++ +||+|| +++.+..+ +.....+ ..+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g-~~v 100 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIG-YQV 100 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHHCC-CeE
Confidence 566777778999999999999999877 89999999987754 3466655 999999 34443322 2222333 356
Q ss_pred EEeeccc
Q psy1417 176 VESTSVD 182 (188)
Q Consensus 176 ~e~~~~~ 182 (188)
+++|.++
T Consensus 101 ~~~SAkt 107 (245)
T TIGR00157 101 LMTSSKN 107 (245)
T ss_pred EEEecCC
Confidence 7776544
No 304
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.45 E-value=6.1e-07 Score=65.00 Aligned_cols=53 Identities=25% Similarity=0.322 Sum_probs=38.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAG 99 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g 99 (188)
+++++|.+++|||||++++.+.. ...+.++.|.+.....+..++ .+.+|||||
T Consensus 103 ~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 103 KVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 88999999999999999998544 344556666544433333332 588999998
No 305
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.43 E-value=6.5e-07 Score=66.02 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=38.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQ 100 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 100 (188)
+++++|.+++|||||++++.+..+. ...+..+.......+.++ ..+.++||||-
T Consensus 117 ~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 117 RAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 8999999999999999999976653 223333444444444443 34789999983
No 306
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.41 E-value=1.1e-06 Score=63.91 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=34.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAG 99 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g 99 (188)
+|+++|.+|||||||+|+|.+.... ...++.|.......+..++ .+.+.||||
T Consensus 104 ~v~~~G~~nvGKStliN~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 104 SVGFIGYPNVGKSSIINTLRSKKVC-KVAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred EEEEEeCCCCChHHHHHHHhcCCce-eeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 8899999999999999999865422 1223333333323333322 267899998
No 307
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.40 E-value=4.2e-06 Score=67.75 Aligned_cols=60 Identities=15% Similarity=0.293 Sum_probs=45.5
Q ss_pred cceeEEEEeCCCCCHHHHHHHHHhCCCCCC----------ccceeeeeeEEEEEEeCCeEEEEEEEeCCC
Q psy1417 40 FSQKSSFLQLVGVGKSSLLIRFSDNTFSGS----------YITTIGVDFKIRTIDVNGEKVKLQIWDTAG 99 (188)
Q Consensus 40 ~~~ki~vvG~~~~GKssLi~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g 99 (188)
+.++|.++|+.|.||||++|.|++...... ..+++........+.-++..+.+++.||||
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpG 91 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPG 91 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCC
Confidence 344999999999999999999996532221 235555555655666678888999999998
No 308
>KOG1547|consensus
Probab=98.39 E-value=2.5e-06 Score=65.49 Aligned_cols=61 Identities=26% Similarity=0.327 Sum_probs=43.1
Q ss_pred ccceeEEEEeCCCCCHHHHHHHHHhCCCCC---------CccceeeeeeEEEEEEeCCeEEEEEEEeCCC
Q psy1417 39 IFSQKSSFLQLVGVGKSSLLIRFSDNTFSG---------SYITTIGVDFKIRTIDVNGEKVKLQIWDTAG 99 (188)
Q Consensus 39 ~~~~ki~vvG~~~~GKssLi~~l~~~~~~~---------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g 99 (188)
-|.++|.|||.+|.|||||++.+....... .+..|.........+.-++-..++++.||||
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPG 113 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPG 113 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCC
Confidence 355699999999999999999998544322 2233444444444444567778899999998
No 309
>PRK09866 hypothetical protein; Provisional
Probab=98.37 E-value=5.5e-06 Score=71.94 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=42.8
Q ss_pred EEEEEEeCCCcccc-----cccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 90 VKLQIWDTAGQERF-----RTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 90 ~~l~l~D~~g~~~~-----~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
..+.+.||||-... .......+..+|+|++|+|.+...+.... ..+..+.+...+.|+++ .||+|+.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhcCCCCCEEEEEEcccCC
Confidence 35688899996432 21223468899999999999875433331 23344444433357776 9999983
No 310
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.37 E-value=1.8e-07 Score=72.64 Aligned_cols=67 Identities=16% Similarity=0.085 Sum_probs=33.6
Q ss_pred EEEEEeCCCcccccccchhcc--------ccCCEEEEEEeCCChhh-HHHHHHHHHHHHh-hCCCceEEE-EEcCCCC
Q psy1417 91 KLQIWDTAGQERFRTITSTYY--------RGTHGVIVVYDVTSGET-FANVKRWLHEIEN-NCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 91 ~l~l~D~~g~~~~~~~~~~~~--------~~~~~vilv~d~~~~~s-~~~~~~~~~~i~~-~~~~~pilv-gnK~Dl~ 157 (188)
.+.++|||||.++...+.... ...-++++++|.....+ ...+..++..+.- ..-..|.+. .||+|+-
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcc
Confidence 689999999977644443322 23458888999764433 2223333333322 113488877 9999983
No 311
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.34 E-value=1.4e-06 Score=64.40 Aligned_cols=53 Identities=23% Similarity=0.362 Sum_probs=36.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAG 99 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g 99 (188)
+++++|.+++|||||+|++.+.... ...+..|.......+..+. .+.++||||
T Consensus 119 ~~~~vG~pnvGKSslin~l~~~~~~-~~~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 119 TVGVVGFPNVGKSSLINSLKRSRAC-NVGATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred EEEEEcCCCCCHHHHHHHHhCcccc-eecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 9999999999999999999975532 2233344444333444332 478999998
No 312
>KOG4273|consensus
Probab=98.34 E-value=1.5e-06 Score=67.10 Aligned_cols=111 Identities=16% Similarity=0.246 Sum_probs=74.1
Q ss_pred eEEEEeCCCC--CHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEE--EEEEeCCC-cccccccchhccccCCEE
Q psy1417 43 KSSFLQLVGV--GKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVK--LQIWDTAG-QERFRTITSTYYRGTHGV 117 (188)
Q Consensus 43 ki~vvG~~~~--GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--l~l~D~~g-~~~~~~~~~~~~~~~~~v 117 (188)
-.+|+|-.|| ||-+|+.+|....|..+..+.-..++..+++ +++-|. +++.-.+- .+.+-... ..-....++
T Consensus 6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwti--d~kyysadi~lcishicde~~lpn~-~~a~pl~a~ 82 (418)
T KOG4273|consen 6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTI--DNKYYSADINLCISHICDEKFLPNA-EIAEPLQAF 82 (418)
T ss_pred eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEe--cceeeecceeEEeecccchhccCCc-ccccceeeE
Confidence 5689999999 9999999998888776654444444544433 333322 22222221 12222222 223445799
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcCCC
Q psy1417 118 IVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGL 156 (188)
Q Consensus 118 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~Dl 156 (188)
++|||.+....+..++.|+....-+.-++.+.||||.|.
T Consensus 83 vmvfdlse~s~l~alqdwl~htdinsfdillcignkvdr 121 (418)
T KOG4273|consen 83 VMVFDLSEKSGLDALQDWLPHTDINSFDILLCIGNKVDR 121 (418)
T ss_pred EEEEeccchhhhHHHHhhccccccccchhheeccccccc
Confidence 999999999999999999987666655677777999996
No 313
>KOG2655|consensus
Probab=98.32 E-value=9e-06 Score=66.17 Aligned_cols=60 Identities=27% Similarity=0.385 Sum_probs=44.5
Q ss_pred cceeEEEEeCCCCCHHHHHHHHHhCCCCCC---------ccceeeeeeEEEEEEeCCeEEEEEEEeCCC
Q psy1417 40 FSQKSSFLQLVGVGKSSLLIRFSDNTFSGS---------YITTIGVDFKIRTIDVNGEKVKLQIWDTAG 99 (188)
Q Consensus 40 ~~~ki~vvG~~~~GKssLi~~l~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g 99 (188)
+.+.+.++|+.|.|||||+|.|+...+... ...++........+.-+|-.+.|++.||||
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPG 88 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPG 88 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCC
Confidence 445999999999999999999986643321 223455555555555677888999999998
No 314
>KOG0705|consensus
Probab=98.30 E-value=9.2e-07 Score=74.67 Aligned_cols=134 Identities=22% Similarity=0.315 Sum_probs=96.3
Q ss_pred cceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEE
Q psy1417 40 FSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIV 119 (188)
Q Consensus 40 ~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vil 119 (188)
.+.|+-|||..++|||+|+.+++.+.+..+-.|. |..|. +.+..++....+-+.|-+|... ..+....|++|+
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e-~~~~k-kE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf 101 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE-GGRFK-KEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF 101 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCc-Cccce-eeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence 4559999999999999999999999887764443 43443 5566788888888999877322 224567899999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCC---CCccchhh---hhhhcCCCCceEEeec
Q psy1417 120 VYDVTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGL---NQRSIDEV---NLCHRGSVDGSVESTS 180 (188)
Q Consensus 120 v~d~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl---~~~~i~~~---~~~~~~~~~~~~e~~~ 180 (188)
||.+.+.++|+.++.+...+..+ ...+|+++ |++.-. ..+++.+. +++..+.-..+|++..
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~a 171 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCA 171 (749)
T ss_pred EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecch
Confidence 99999999999998877776653 24577666 777655 23444433 5566666666666643
No 315
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.29 E-value=1.6e-06 Score=64.85 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=36.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCC-------CccceeeeeeEEEEEEeCCeEEEEEEEeCCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSG-------SYITTIGVDFKIRTIDVNGEKVKLQIWDTAG 99 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g 99 (188)
+++++|.+|||||||+|.|.+..... ...+..|.......+..+. .+.++||||
T Consensus 129 ~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 129 DVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 78999999999999999998643211 1122234444444554443 368999998
No 316
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.26 E-value=1.3e-05 Score=66.41 Aligned_cols=112 Identities=21% Similarity=0.182 Sum_probs=68.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC----CCCCC----------ccceee-------eee---EEEEE-EeCCeEEEEEEEeC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN----TFSGS----------YITTIG-------VDF---KIRTI-DVNGEKVKLQIWDT 97 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~----~~~~~----------~~~t~~-------~~~---~~~~~-~~~~~~~~l~l~D~ 97 (188)
-|.++|+.++|||||+++|.+. +..++ .++..| .-+ ....+ ..++-...+.+.||
T Consensus 19 yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDc 98 (492)
T TIGR02836 19 YIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDC 98 (492)
T ss_pred EEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEEC
Confidence 6899999999999999999976 32211 111122 111 11112 22455677899999
Q ss_pred CCccc--------ccc---------------------cchhccc-cCCEEEEEE-eCC----ChhhHHHH-HHHHHHHHh
Q psy1417 98 AGQER--------FRT---------------------ITSTYYR-GTHGVIVVY-DVT----SGETFANV-KRWLHEIEN 141 (188)
Q Consensus 98 ~g~~~--------~~~---------------------~~~~~~~-~~~~vilv~-d~~----~~~s~~~~-~~~~~~i~~ 141 (188)
.|-.. -.. -....++ .+++.++|. |.+ .++.+... ..|+.++.+
T Consensus 99 vG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~ 178 (492)
T TIGR02836 99 VGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE 178 (492)
T ss_pred CCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHh
Confidence 98211 111 0222344 688888887 664 23445555 468888877
Q ss_pred hCCCceEEE-EEcCCC
Q psy1417 142 NCEVVNRIL-GLRLGL 156 (188)
Q Consensus 142 ~~~~~pilv-gnK~Dl 156 (188)
.. +|.++ .||.|-
T Consensus 179 ~~--kPfiivlN~~dp 192 (492)
T TIGR02836 179 LN--KPFIILLNSTHP 192 (492)
T ss_pred cC--CCEEEEEECcCC
Confidence 65 89887 999993
No 317
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.25 E-value=2.3e-05 Score=59.28 Aligned_cols=84 Identities=11% Similarity=0.082 Sum_probs=44.9
Q ss_pred EEEEEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcCCCCC---ccchh--h
Q psy1417 90 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQ---RSIDE--V 164 (188)
Q Consensus 90 ~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~Dl~~---~~i~~--~ 164 (188)
....+.++.|..-.....+ . -++.++.|+|+.+.++... .+..++. ..=++++||+|+.. ..+.. +
T Consensus 92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~qi~----~ad~~~~~k~d~~~~~~~~~~~~~~ 162 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGPGIT----RSDLLVINKIDLAPMVGADLGVMER 162 (199)
T ss_pred CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHhHhh----hccEEEEEhhhccccccccHHHHHH
Confidence 4556777777322111111 1 2578999999997665321 1112221 12256699999842 12221 2
Q ss_pred hhhhcCCCCceEEeeccc
Q psy1417 165 NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 165 ~~~~~~~~~~~~e~~~~~ 182 (188)
+...-+....++++++++
T Consensus 163 ~~~~~~~~~~i~~~Sa~~ 180 (199)
T TIGR00101 163 DAKKMRGEKPFIFTNLKT 180 (199)
T ss_pred HHHHhCCCCCEEEEECCC
Confidence 222324567788888765
No 318
>KOG0467|consensus
Probab=98.21 E-value=6.2e-06 Score=72.06 Aligned_cols=113 Identities=19% Similarity=0.241 Sum_probs=80.0
Q ss_pred CCcccceeEEEEeCCCCCHHHHHHHHHhCCC------------CC--CccceeeeeeEEEEEEeCCeEEEEEEEeCCCcc
Q psy1417 36 PTHIFSQKSSFLQLVGVGKSSLLIRFSDNTF------------SG--SYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQE 101 (188)
Q Consensus 36 ~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~------------~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 101 (188)
...+- +|+++..-.-|||||+..|+..+- .+ +...+-|..-..-.+..-.+.+.+++.|+||+-
T Consensus 6 ~~~ir--n~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 6 SEGIR--NICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCcee--EEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 34445 899999999999999999985331 11 111223322223333344567889999999999
Q ss_pred cccccchhccccCCEEEEEEeCCChhhHHHH---H-HHHHHHHhhCCCceEEEEEcCCC
Q psy1417 102 RFRTITSTYYRGTHGVIVVYDVTSGETFANV---K-RWLHEIENNCEVVNRILGLRLGL 156 (188)
Q Consensus 102 ~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~---~-~~~~~i~~~~~~~pilvgnK~Dl 156 (188)
.|........+-+|+.++.+|+.....-+.. . .|++.+ .|++|.||+|.
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~------~~~lvinkidr 136 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGL------KPILVINKIDR 136 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccC------ceEEEEehhhh
Confidence 9999988888889999999998876444433 2 365444 78999999993
No 319
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.21 E-value=4.2e-06 Score=66.46 Aligned_cols=54 Identities=24% Similarity=0.344 Sum_probs=37.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQ 100 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 100 (188)
+++++|.+|||||||+|++.+...... .+..|.+.....+..+. .+.++||||-
T Consensus 120 ~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 120 RAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 999999999999999999986553221 23334333334444432 3689999996
No 320
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.20 E-value=6e-06 Score=65.97 Aligned_cols=55 Identities=24% Similarity=0.321 Sum_probs=38.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQE 101 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 101 (188)
+++++|.++||||||+|.|.+.+... ..+..|.+.....+..++ .+.++||||-.
T Consensus 123 ~~~~~G~pnvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 123 RAMIIGIPNVGKSTLINRLAGKKIAK-TGNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCccc-cCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 89999999999999999998765322 233334444434444432 37899999963
No 321
>KOG0458|consensus
Probab=98.20 E-value=2.7e-05 Score=66.34 Aligned_cols=113 Identities=17% Similarity=0.183 Sum_probs=71.3
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCC--C-----------------------------CCCccceeeeeeEEEEEEeCCeE
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNT--F-----------------------------SGSYITTIGVDFKIRTIDVNGEK 89 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~--~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 89 (188)
++.++++|.-++|||||.-+++..- . .++... |..-......++-..
T Consensus 177 ~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERer--GvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 177 HLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERER--GVTMDVKTTWFESKS 254 (603)
T ss_pred ceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhc--ceeEEeeeEEEecCc
Confidence 3499999999999999999998421 0 011112 222233344445566
Q ss_pred EEEEEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHH------HHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 90 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANV------KRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 90 ~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~------~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
..+++.|.||+..|....-.-...+|+.++|+|++.. .|+.- .+-...+.+...-.-++| .||.|+
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~ 327 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRSLGISQLIVAINKMDL 327 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHHcCcceEEEEeecccc
Confidence 7799999999888865544445678999999998854 24331 122222333222334555 999998
No 322
>KOG0461|consensus
Probab=98.19 E-value=1.1e-05 Score=64.93 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=66.1
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCC----CCCCccc-----eeeeeeEEEEEE-----eCCeEEEEEEEeCCCccccccc
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNT----FSGSYIT-----TIGVDFKIRTID-----VNGEKVKLQIWDTAGQERFRTI 106 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~----~~~~~~~-----t~~~~~~~~~~~-----~~~~~~~l~l~D~~g~~~~~~~ 106 (188)
++|+-++|.-.+|||||.+++..-. |.....+ |...-+..-... ..+++.++.+.|+||+...-..
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt 86 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT 86 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence 3599999999999999999997422 2221111 122222211111 2467788999999998655333
Q ss_pred chhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcCCC
Q psy1417 107 TSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGL 156 (188)
Q Consensus 107 ~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~Dl 156 (188)
.-.--.-.|..++|+|+.....-+.+.-.+ +........++|.||+|.
T Consensus 87 iiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~~c~klvvvinkid~ 134 (522)
T KOG0461|consen 87 IIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGELLCKKLVVVINKIDV 134 (522)
T ss_pred HHhhhheeeeeeEEEehhcccccccchhhh--hhhhhccceEEEEecccc
Confidence 222334468899999998654333332211 222222234555788886
No 323
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.18 E-value=1.6e-05 Score=64.19 Aligned_cols=110 Identities=23% Similarity=0.192 Sum_probs=65.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCC--CC-------------------------------CccceeeeeeEEEEEEeCCeE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTF--SG-------------------------------SYITTIGVDFKIRTIDVNGEK 89 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~--~~-------------------------------~~~~t~~~~~~~~~~~~~~~~ 89 (188)
+++-+|.-.=||||||-||+.+.- .+ +....+..+..++-+ .-..
T Consensus 8 RfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF--sT~K 85 (431)
T COG2895 8 RFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF--STEK 85 (431)
T ss_pred eEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec--cccc
Confidence 899999999999999999985321 00 011112222222222 2244
Q ss_pred EEEEEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 90 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 90 ~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
.++.+-||||++.|-.....--.-||+.|+++|+...- ++.. .--..|.....-.-++| .||+||
T Consensus 86 RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QT-rRHs~I~sLLGIrhvvvAVNKmDL 151 (431)
T COG2895 86 RKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQT-RRHSFIASLLGIRHVVVAVNKMDL 151 (431)
T ss_pred ceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHh-HHHHHHHHHhCCcEEEEEEeeecc
Confidence 67899999999988644444455689999999985432 1111 11111222222223455 999999
No 324
>KOG1532|consensus
Probab=98.13 E-value=5.3e-06 Score=64.89 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|+++|..|+||||+++||..
T Consensus 21 ~ilVvGMAGSGKTTF~QrL~~ 41 (366)
T KOG1532|consen 21 IILVVGMAGSGKTTFMQRLNS 41 (366)
T ss_pred EEEEEecCCCCchhHHHHHHH
Confidence 789999999999999999973
No 325
>KOG1954|consensus
Probab=98.12 E-value=1.4e-05 Score=64.88 Aligned_cols=111 Identities=14% Similarity=0.174 Sum_probs=70.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCC---ccceeeeeeEEEEEEe-------------C--------------------
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGS---YITTIGVDFKIRTIDV-------------N-------------------- 86 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~---~~~t~~~~~~~~~~~~-------------~-------------------- 86 (188)
-|+++|.-+.||||+|+.|+...++.- ..||.. +-...+.- +
T Consensus 60 mill~GqyStGKTtfi~yLle~dypg~riGpEPTtd--~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 60 MILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTD--RFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred eEEEEeccccchhHHHHHHHhCCCCccccCCCCCcc--eeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 789999999999999999998887642 123321 11111110 0
Q ss_pred -----C-eEEEEEEEeCCCccc-----------ccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEE
Q psy1417 87 -----G-EKVKLQIWDTAGQER-----------FRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRI 149 (188)
Q Consensus 87 -----~-~~~~l~l~D~~g~~~-----------~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pil 149 (188)
+ ---.+++.||||--. |...++-+..++|.++++||...-+--++.+..+..++.+.. ..-+
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Ed-kiRV 216 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHED-KIRV 216 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcc-eeEE
Confidence 0 012468999998311 223334456789999999998876555555566666665443 3345
Q ss_pred EEEcCCC
Q psy1417 150 LGLRLGL 156 (188)
Q Consensus 150 vgnK~Dl 156 (188)
|.||.|.
T Consensus 217 VLNKADq 223 (532)
T KOG1954|consen 217 VLNKADQ 223 (532)
T ss_pred Eeccccc
Confidence 5799996
No 326
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.11 E-value=6.7e-06 Score=66.71 Aligned_cols=54 Identities=22% Similarity=0.311 Sum_probs=40.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQ 100 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 100 (188)
++.++|-++||||||||+|.+... ....+..|.+.....+..+.. +.++||||-
T Consensus 134 ~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 134 RVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred EEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence 899999999999999999997654 333444465555556655543 789999994
No 327
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.03 E-value=3.2e-05 Score=59.56 Aligned_cols=84 Identities=19% Similarity=0.056 Sum_probs=51.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC--CCCCC---ccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccc------cchhcc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN--TFSGS---YITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT------ITSTYY 111 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~--~~~~~---~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~------~~~~~~ 111 (188)
-|.|+|+.++|||+|+|++++. .|... ...|.|.-.+...+.. +....+.+.||+|-..... ..-..+
T Consensus 9 vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l 87 (224)
T cd01851 9 VVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARLFAL 87 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHHHHH
Confidence 5789999999999999999987 55322 1234443222222211 2346799999999643321 112223
Q ss_pred cc--CCEEEEEEeCCChh
Q psy1417 112 RG--THGVIVVYDVTSGE 127 (188)
Q Consensus 112 ~~--~~~vilv~d~~~~~ 127 (188)
.. ++++|+..+.+..+
T Consensus 88 ~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 88 ATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHhCEEEEeccCcccH
Confidence 33 78888877766443
No 328
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.02 E-value=7.3e-06 Score=59.74 Aligned_cols=22 Identities=41% Similarity=0.477 Sum_probs=20.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++++|++|||||||+|.|...
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6799999999999999999865
No 329
>KOG0464|consensus
Probab=98.02 E-value=4.8e-06 Score=68.55 Aligned_cols=111 Identities=14% Similarity=0.221 Sum_probs=85.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHh--------CCCCCCc--------cceeeeeeEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD--------NTFSGSY--------ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTI 106 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~--------~~~~~~~--------~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~ 106 (188)
+|-++..-.+||||...|++. +...+.. ...-|....+.-++++.+++++++.||||+..|.-.
T Consensus 39 nigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~le 118 (753)
T KOG0464|consen 39 NIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLE 118 (753)
T ss_pred cceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEE
Confidence 889999999999999999873 1111111 111355566667777888899999999999999999
Q ss_pred chhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 107 TSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 107 ~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
.+++++--|+++.|||.+....-+.+.-|...- + -++|-.. .||.|.
T Consensus 119 verclrvldgavav~dasagve~qtltvwrqad-k--~~ip~~~finkmdk 166 (753)
T KOG0464|consen 119 VERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD-K--FKIPAHCFINKMDK 166 (753)
T ss_pred HHHHHHHhcCeEEEEeccCCcccceeeeehhcc-c--cCCchhhhhhhhhh
Confidence 999999999999999999887777787884322 2 2478766 999997
No 330
>KOG0410|consensus
Probab=98.01 E-value=1.6e-05 Score=63.58 Aligned_cols=116 Identities=12% Similarity=0.204 Sum_probs=67.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCc--cceeeeeeEEEEEEeCCeEEEEEEEeCCCc---------ccccccchhcc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSY--ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQ---------ERFRTITSTYY 111 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~---------~~~~~~~~~~~ 111 (188)
-|.+||-+++|||||++.|.+....+.. -.|.........++ .|. .+.+-||-|- ..|....+. .
T Consensus 180 viavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp-sg~--~vlltDTvGFisdLP~~LvaAF~ATLee-V 255 (410)
T KOG0410|consen 180 VIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP-SGN--FVLLTDTVGFISDLPIQLVAAFQATLEE-V 255 (410)
T ss_pred eEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC-CCc--EEEEeechhhhhhCcHHHHHHHHHHHHH-H
Confidence 6799999999999999999865543321 12332222222222 222 3556688872 223333332 4
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCceEE-----EEEcCCCCCccch
Q psy1417 112 RGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRI-----LGLRLGLNQRSID 162 (188)
Q Consensus 112 ~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~pil-----vgnK~Dl~~~~i~ 162 (188)
..+|.++=|.|++.++--+....-+.-++... +..|.+ |-||+|.....++
T Consensus 256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e 312 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE 312 (410)
T ss_pred hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc
Confidence 57999999999999864333334444444422 333332 3799998444443
No 331
>KOG1144|consensus
Probab=97.99 E-value=2e-05 Score=68.89 Aligned_cols=108 Identities=19% Similarity=0.251 Sum_probs=73.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCcc----ceeeeeeEEEE--------EEeCCe-E---EEEEEEeCCCccccccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYI----TTIGVDFKIRT--------IDVNGE-K---VKLQIWDTAGQERFRTI 106 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~----~t~~~~~~~~~--------~~~~~~-~---~~l~l~D~~g~~~~~~~ 106 (188)
=|+|+|.-.+|||-|+..+-+.+..+... ..+|.+|.... +.-++. . =-+.+.||||++.|..+
T Consensus 477 IcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnl 556 (1064)
T KOG1144|consen 477 ICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNL 556 (1064)
T ss_pred eEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhh
Confidence 68999999999999999998655544322 22444333221 000011 0 12678899999999999
Q ss_pred chhccccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 107 TSTYYRGTHGVIVVYDVTSG---ETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 107 ~~~~~~~~~~vilv~d~~~~---~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
+.+-...||..|+|+|+... ++++.+ ..++. .+.|.+| .||+|.
T Consensus 557 RsrgsslC~~aIlvvdImhGlepqtiESi----~lLR~--rktpFivALNKiDR 604 (1064)
T KOG1144|consen 557 RSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLRM--RKTPFIVALNKIDR 604 (1064)
T ss_pred hhccccccceEEEEeehhccCCcchhHHH----HHHHh--cCCCeEEeehhhhh
Confidence 88888899999999998864 444333 22332 3489998 999996
No 332
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.97 E-value=2.5e-05 Score=56.54 Aligned_cols=52 Identities=19% Similarity=0.317 Sum_probs=33.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCC-CCCccceeeeeeEEEEEEeCCeEEEEEEEeCCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTF-SGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAG 99 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g 99 (188)
+++++|.+++|||||+|.+.+... .....+ +.......+..+ ..+.+.||||
T Consensus 102 ~~~~~G~~~~GKstlin~l~~~~~~~~~~~~--~~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 102 TVGVIGYPNVGKSSVINALLNKLKLKVGNVP--GTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred EEEEEccCCCCHHHHHHHHHccccccccCCC--CcccceEEEEec---CCEEEEECCC
Confidence 899999999999999999996542 111111 211222223332 2478999998
No 333
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=4.5e-05 Score=60.35 Aligned_cols=113 Identities=13% Similarity=0.140 Sum_probs=70.4
Q ss_pred CCcccceeEEEEeCCCCCHHHHHHHHHh---CC-------------CCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCC
Q psy1417 36 PTHIFSQKSSFLQLVGVGKSSLLIRFSD---NT-------------FSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAG 99 (188)
Q Consensus 36 ~~~~~~~ki~vvG~~~~GKssLi~~l~~---~~-------------~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g 99 (188)
.+...++||..+|.-+-|||||...+.. .. -+++.. -|..++...+.++-....+...|+||
T Consensus 7 ~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~--rGITIntahveyet~~rhyahVDcPG 84 (394)
T COG0050 7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKA--RGITINTAHVEYETANRHYAHVDCPG 84 (394)
T ss_pred cCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhh--cCceeccceeEEecCCceEEeccCCC
Confidence 3444567999999999999999888752 11 111211 23344444444544445578899999
Q ss_pred cccccccchhccccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhCCCce-EEE-EEcCCC
Q psy1417 100 QERFRTITSTYYRGTHGVIVVYDVTSG---ETFANVKRWLHEIENNCEVVN-RIL-GLRLGL 156 (188)
Q Consensus 100 ~~~~~~~~~~~~~~~~~vilv~d~~~~---~s~~~~~~~~~~i~~~~~~~p-ilv-gnK~Dl 156 (188)
+..|....-.--..+|+.|+|+++++. ++-+.+. +.++. .+| |++ .||+|+
T Consensus 85 HaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL-----larqv-Gvp~ivvflnK~Dm 140 (394)
T COG0050 85 HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL-----LARQV-GVPYIVVFLNKVDM 140 (394)
T ss_pred hHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh-----hhhhc-CCcEEEEEEecccc
Confidence 988753322224468999999999874 3332221 22222 355 555 999999
No 334
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.93 E-value=5.9e-05 Score=61.33 Aligned_cols=60 Identities=10% Similarity=0.100 Sum_probs=38.1
Q ss_pred EEEEEEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcCCCC
Q psy1417 89 KVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLN 157 (188)
Q Consensus 89 ~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~Dl~ 157 (188)
.+.+.+.||+|..... ......+|.+++|.+....+.++.++.-..++. -++|.||.|+.
T Consensus 148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~a------DIiVVNKaDl~ 207 (332)
T PRK09435 148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIKKGIMELA------DLIVINKADGD 207 (332)
T ss_pred CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHHhhhhhhh------heEEeehhccc
Confidence 4778999999865222 224667999999977555555555443111221 26669999983
No 335
>KOG1486|consensus
Probab=97.93 E-value=0.00013 Score=56.59 Aligned_cols=94 Identities=23% Similarity=0.307 Sum_probs=58.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCC-CccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccc------c-ccchhccccC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSG-SYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERF------R-TITSTYYRGT 114 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~------~-~~~~~~~~~~ 114 (188)
+++++|-++||||||+..+....... .|.-| .....+-.+.+++ ..+++.|.||--.- + ...-...+-+
T Consensus 64 RValIGfPSVGKStlLs~iT~T~SeaA~yeFT-TLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArta 140 (364)
T KOG1486|consen 64 RVALIGFPSVGKSTLLSKITSTHSEAASYEFT-TLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVARTA 140 (364)
T ss_pred EEEEecCCCccHHHHHHHhhcchhhhhceeee-EEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeecc
Confidence 78999999999999999987543221 12211 1223334556666 45889999983221 1 1112235678
Q ss_pred CEEEEEEeCCChhhHHH-HHHHHHHH
Q psy1417 115 HGVIVVYDVTSGETFAN-VKRWLHEI 139 (188)
Q Consensus 115 ~~vilv~d~~~~~s~~~-~~~~~~~i 139 (188)
|.+++|.|++..+--.. +.+-++.+
T Consensus 141 DlilMvLDatk~e~qr~~le~ELe~v 166 (364)
T KOG1486|consen 141 DLILMVLDATKSEDQREILEKELEAV 166 (364)
T ss_pred cEEEEEecCCcchhHHHHHHHHHHHh
Confidence 99999999998665443 34444443
No 336
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.90 E-value=6.4e-05 Score=54.75 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=19.1
Q ss_pred EEEEeCCCCCHHHHHHHHHhC
Q psy1417 44 SSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~~~ 64 (188)
++++|..|+|||||+++++..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 589999999999999999864
No 337
>PRK12288 GTPase RsgA; Reviewed
Probab=97.88 E-value=3.4e-05 Score=63.20 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=20.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT 65 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~ 65 (188)
-++++|.+|||||||+|+|+...
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcccc
Confidence 36899999999999999998553
No 338
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=7.3e-05 Score=63.94 Aligned_cols=113 Identities=17% Similarity=0.218 Sum_probs=68.3
Q ss_pred CCCCCCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhcc
Q psy1417 32 GKNGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYY 111 (188)
Q Consensus 32 ~~~~~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~ 111 (188)
.+.+...++ -++|+|++|+||||||+.|... +.. .|+..-....++ +.|+...++++++|. ...++.. ..
T Consensus 62 tp~d~PPPf--IvavvGPpGtGKsTLirSlVrr-~tk---~ti~~i~GPiTv-vsgK~RRiTflEcp~--Dl~~miD-va 131 (1077)
T COG5192 62 TPKDLPPPF--IVAVVGPPGTGKSTLIRSLVRR-FTK---QTIDEIRGPITV-VSGKTRRITFLECPS--DLHQMID-VA 131 (1077)
T ss_pred CcccCCCCe--EEEeecCCCCChhHHHHHHHHH-HHH---hhhhccCCceEE-eecceeEEEEEeChH--HHHHHHh-HH
Confidence 344444455 7789999999999999998743 211 122111111222 456777899999993 2223332 34
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEE--EEEcCCCC
Q psy1417 112 RGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRI--LGLRLGLN 157 (188)
Q Consensus 112 ~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pil--vgnK~Dl~ 157 (188)
+-+|.|++.+|.+-.-..+.+. ++..+..+. .|-+ |.++.|+.
T Consensus 132 KIaDLVlLlIdgnfGfEMETmE-FLnil~~HG--mPrvlgV~ThlDlf 176 (1077)
T COG5192 132 KIADLVLLLIDGNFGFEMETME-FLNILISHG--MPRVLGVVTHLDLF 176 (1077)
T ss_pred HhhheeEEEeccccCceehHHH-HHHHHhhcC--CCceEEEEeecccc
Confidence 5689999999988754333333 333344444 4533 48999993
No 339
>PRK13796 GTPase YqeH; Provisional
Probab=97.85 E-value=2.9e-05 Score=64.14 Aligned_cols=55 Identities=20% Similarity=0.248 Sum_probs=35.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCC----ccceeeeeeEEEEEEeCCeEEEEEEEeCCCc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGS----YITTIGVDFKIRTIDVNGEKVKLQIWDTAGQ 100 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 100 (188)
++.++|.+|||||||+|+|+....... .++..|.+.....+..++. ..++||||-
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi 220 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI 220 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence 789999999999999999985431111 1222333333444444433 369999995
No 340
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.85 E-value=4.1e-05 Score=63.09 Aligned_cols=56 Identities=20% Similarity=0.286 Sum_probs=35.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCC----CccceeeeeeEEEEEEeCCeEEEEEEEeCCCcc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSG----SYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQE 101 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 101 (188)
++.++|.+|||||||+|.++...... ..++..|.+.....+..++. +.++||||-.
T Consensus 156 ~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~ 215 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGII 215 (360)
T ss_pred eEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCC
Confidence 79999999999999999998643211 11222233333334444221 4699999953
No 341
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.84 E-value=3.6e-05 Score=60.13 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=20.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|.+|||||||+|.+...
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhh
Confidence 6789999999999999999864
No 342
>PRK12289 GTPase RsgA; Reviewed
Probab=97.82 E-value=3.9e-05 Score=62.94 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=19.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++|+|.+|||||||+|.|+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCc
Confidence 3699999999999999999854
No 343
>KOG2486|consensus
Probab=97.73 E-value=6.1e-05 Score=59.08 Aligned_cols=106 Identities=20% Similarity=0.131 Sum_probs=61.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccc-eeeeeeEEEEEEeCCeEEEEEEEeCCC----------cccccccchhcc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYIT-TIGVDFKIRTIDVNGEKVKLQIWDTAG----------QERFRTITSTYY 111 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~l~D~~g----------~~~~~~~~~~~~ 111 (188)
.++++|..+||||+|++.+........... +.|... .++.-.-.-.+.+.|.|| ...+....+.|+
T Consensus 138 e~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq---~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~ 214 (320)
T KOG2486|consen 138 ELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQ---AINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYL 214 (320)
T ss_pred eeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccce---eeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHHH
Confidence 899999999999999999986543332222 333222 222222234577889998 122333344444
Q ss_pred ccCC---EEEEEEeCCChh-hHHH-HHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 112 RGTH---GVIVVYDVTSGE-TFAN-VKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 112 ~~~~---~vilv~d~~~~~-s~~~-~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
.+-+ -+++.+|++.+- .-+. ...|+.+-. +|+.+ .||+|.
T Consensus 215 leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~-----VP~t~vfTK~DK 260 (320)
T KOG2486|consen 215 LERENLVRVFLLVDASVPIQPTDNPEIAWLGENN-----VPMTSVFTKCDK 260 (320)
T ss_pred HhhhhhheeeeeeeccCCCCCCChHHHHHHhhcC-----CCeEEeeehhhh
Confidence 3332 445555665431 1222 234544433 99877 999997
No 344
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.72 E-value=6.4e-05 Score=59.83 Aligned_cols=59 Identities=22% Similarity=0.217 Sum_probs=35.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC------CCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT------FSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR 104 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~ 104 (188)
-.+++|.+|||||||+|+|.... ..+.....-..+.....+.+.++. .+.||||-..+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 45899999999999999998422 112211222223344555554333 367999965443
No 345
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.72 E-value=0.00014 Score=59.86 Aligned_cols=81 Identities=16% Similarity=0.055 Sum_probs=50.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCC-CC-Cccc-eeeeeeEEEEEEeCC---------------eEEEEEEEeCCCcccc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTF-SG-SYIT-TIGVDFKIRTIDVNG---------------EKVKLQIWDTAGQERF 103 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~-~~-~~~~-t~~~~~~~~~~~~~~---------------~~~~l~l~D~~g~~~~ 103 (188)
.|+.++|.+++|||||.+.+.+... .. .|.. |+..+... +.+.+ ....+.+.|.+|--.-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~--v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g 80 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGV--VNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG 80 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeE--EEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence 3899999999999999999987654 22 2222 23322222 22222 1235788899984321
Q ss_pred ----cc---cchhccccCCEEEEEEeCC
Q psy1417 104 ----RT---ITSTYYRGTHGVIVVYDVT 124 (188)
Q Consensus 104 ----~~---~~~~~~~~~~~vilv~d~~ 124 (188)
.. ..-..++.+|+++.|++..
T Consensus 81 As~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 81 ASKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred hhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 11 2223467899999999975
No 346
>KOG3859|consensus
Probab=97.67 E-value=3.1e-05 Score=60.76 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=49.3
Q ss_pred CCCCCCCCCCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCcc----ceeeeeeEEEEEEeCCeEEEEEEEeCCC
Q psy1417 28 PTGRGKNGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYI----TTIGVDFKIRTIDVNGEKVKLQIWDTAG 99 (188)
Q Consensus 28 ~~~~~~~~~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~l~l~D~~g 99 (188)
|.+-.+.+...-|+++|+.||.+|.|||||+..|.+.+|..... |++........+.-.+-..++++.||.|
T Consensus 29 PdQLV~ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 29 PDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred hHHHHHHHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 33333344444566699999999999999999999888765433 3344333333333356778899999997
No 347
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=6.7e-05 Score=60.04 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=62.7
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCC---CCCCccc--eeeeeeEEEEE----------------EeC------CeEEEEE
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNT---FSGSYIT--TIGVDFKIRTI----------------DVN------GEKVKLQ 93 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~---~~~~~~~--t~~~~~~~~~~----------------~~~------~~~~~l~ 93 (188)
+++|-++|.-.-|||||.+.|.+-. +.++-.. |+-.-|....+ ... .-...+.
T Consensus 10 ~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VS 89 (415)
T COG5257 10 EVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVS 89 (415)
T ss_pred ceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEE
Confidence 4499999999999999999998532 2221111 11111110000 000 1224578
Q ss_pred EEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcCCC
Q psy1417 94 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGL 156 (188)
Q Consensus 94 l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~Dl 156 (188)
|.|.||++-.....-.--.-+|+.++|+.++.+.---...+-+..+.-..-.-.|++-||+|+
T Consensus 90 fVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDl 152 (415)
T COG5257 90 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDL 152 (415)
T ss_pred EeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccce
Confidence 999999986542221112336899999999865322222222222222221233445999999
No 348
>KOG0448|consensus
Probab=97.58 E-value=0.00097 Score=58.16 Aligned_cols=66 Identities=11% Similarity=0.273 Sum_probs=41.0
Q ss_pred EEEEEeCCCcc---cccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCc
Q psy1417 91 KLQIWDTAGQE---RFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQR 159 (188)
Q Consensus 91 ~l~l~D~~g~~---~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~ 159 (188)
.+.+.|.||-+ ....-...+..++|++|+|.++.+..+.. .++++....+. ..-|.| .||.|....
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~s-ek~Ff~~vs~~--KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLS-EKQFFHKVSEE--KPNIFILNNKWDASAS 276 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHH-HHHHHHHhhcc--CCcEEEEechhhhhcc
Confidence 35677888843 23333456678899999999877654432 33455555544 233555 899998433
No 349
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.58 E-value=0.00042 Score=65.21 Aligned_cols=108 Identities=17% Similarity=0.121 Sum_probs=62.6
Q ss_pred EEEEeCCCCCHHHHHHHHHhCCCCCCc------cceeeeeeEEEEEEeCCeEEEEEEEeCCCccc--------ccccchh
Q psy1417 44 SSFLQLVGVGKSSLLIRFSDNTFSGSY------ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER--------FRTITST 109 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~--------~~~~~~~ 109 (188)
.+|+|++|+||||++.+- +-.|+-.. ...++.+. .....+.+ .-.++|++|... ....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 489999999999999986 34443221 11112111 11111222 246889998321 1122333
Q ss_pred cc---------ccCCEEEEEEeCCChh-----hH----HHHHHHHHHHHhhC-CCceEEE-EEcCCC
Q psy1417 110 YY---------RGTHGVIVVYDVTSGE-----TF----ANVKRWLHEIENNC-EVVNRIL-GLRLGL 156 (188)
Q Consensus 110 ~~---------~~~~~vilv~d~~~~~-----s~----~~~~~~~~~i~~~~-~~~pilv-gnK~Dl 156 (188)
++ +..|+||+++|+.+-- .. ..+...+.++.+.. -..||-| .||+|+
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dl 255 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADL 255 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchh
Confidence 32 3479999999987532 11 23345666666643 4688877 999997
No 350
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.57 E-value=0.00074 Score=49.61 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=38.3
Q ss_pred EEEEEEEeCCCccccc----ccchhc--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcCCCCCc
Q psy1417 89 KVKLQIWDTAGQERFR----TITSTY--YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQR 159 (188)
Q Consensus 89 ~~~l~l~D~~g~~~~~----~~~~~~--~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~Dl~~~ 159 (188)
.+.+.+.|++|..... .....+ ....+.+++|+|...... ..++...+.+... +--+|.||.|...+
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC-CCEEEEECCcCCCC
Confidence 4567889999964221 111111 124789999999865432 2234444544333 34455899997443
No 351
>PRK00098 GTPase RsgA; Reviewed
Probab=97.57 E-value=0.00018 Score=57.75 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT 65 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~ 65 (188)
.++++|.+|||||||+|.|++..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999998543
No 352
>KOG1491|consensus
Probab=97.56 E-value=0.00057 Score=55.15 Aligned_cols=85 Identities=16% Similarity=0.163 Sum_probs=51.4
Q ss_pred cceeEEEEeCCCCCHHHHHHHHHhCCCCCCccc--eeeeeeEEEEEEe-------------CCeEEEEEEEeCCCcccc-
Q psy1417 40 FSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYIT--TIGVDFKIRTIDV-------------NGEKVKLQIWDTAGQERF- 103 (188)
Q Consensus 40 ~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~--t~~~~~~~~~~~~-------------~~~~~~l~l~D~~g~~~~- 103 (188)
.+.|+-+||.++||||||.|.+.+.......-| |+..+.....+.- ...+..++++|+.|--+-
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 345999999999999999999987654443323 3332222111110 124467999999873221
Q ss_pred ---cccch---hccccCCEEEEEEeCC
Q psy1417 104 ---RTITS---TYYRGTHGVIVVYDVT 124 (188)
Q Consensus 104 ---~~~~~---~~~~~~~~vilv~d~~ 124 (188)
..+-. ..++.+|+++=|+++.
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEec
Confidence 11212 2256688888887654
No 353
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.56 E-value=0.0002 Score=57.20 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT 65 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~ 65 (188)
.++++|.+|||||||+|.|++..
T Consensus 163 ~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 163 TSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred eEEEECCCCCCHHHHHHHHhchh
Confidence 78999999999999999998654
No 354
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.54 E-value=0.00053 Score=55.13 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=19.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|.|+|.+|+|||||+..+..
T Consensus 36 ~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 36 RVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 779999999999999999863
No 355
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.53 E-value=0.00058 Score=57.34 Aligned_cols=67 Identities=15% Similarity=0.184 Sum_probs=38.1
Q ss_pred EEEEEEEeCCCcccccc----cchhc--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcCCCCCc
Q psy1417 89 KVKLQIWDTAGQERFRT----ITSTY--YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQR 159 (188)
Q Consensus 89 ~~~l~l~D~~g~~~~~~----~~~~~--~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~Dl~~~ 159 (188)
.+.+.+.||+|...... ....+ ....+.+++|.|++..+.-.... ..+.+. -++--+|.||.|...+
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a---~~F~~~-~~~~g~IlTKlD~~ar 254 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA---KAFKDS-VDVGSVIITKLDGHAK 254 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH---HHHHhc-cCCcEEEEECccCCCC
Confidence 47899999999643321 11111 12467899999987654332222 222221 1244567999997443
No 356
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.48 E-value=0.0011 Score=52.54 Aligned_cols=88 Identities=13% Similarity=0.143 Sum_probs=46.5
Q ss_pred eEEEEEEEeCCCcccccccc----hh---cc-----ccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhCCCceEEEEEcC
Q psy1417 88 EKVKLQIWDTAGQERFRTIT----ST---YY-----RGTHGVIVVYDVTSG-ETFANVKRWLHEIENNCEVVNRILGLRL 154 (188)
Q Consensus 88 ~~~~l~l~D~~g~~~~~~~~----~~---~~-----~~~~~vilv~d~~~~-~s~~~~~~~~~~i~~~~~~~pilvgnK~ 154 (188)
..+.+.+.||+|........ .. .. ..++.+++|.|++.. +.+..+ ..+.+.. ++--+|.||.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~-~~~g~IlTKl 227 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV-GLTGIILTKL 227 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC-CCCEEEEEcc
Confidence 34778999999965432111 11 11 137899999998753 223222 3333222 2345669999
Q ss_pred CCCCccchhhhhhhcCCCCceEEeec
Q psy1417 155 GLNQRSIDEVNLCHRGSVDGSVESTS 180 (188)
Q Consensus 155 Dl~~~~i~~~~~~~~~~~~~~~e~~~ 180 (188)
|...+.=..-......+....+-+.+
T Consensus 228 De~~~~G~~l~~~~~~~~Pi~~~~~G 253 (272)
T TIGR00064 228 DGTAKGGIILSIAYELKLPIKFIGVG 253 (272)
T ss_pred CCCCCccHHHHHHHHHCcCEEEEeCC
Confidence 98443322223333444544444443
No 357
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00064 Score=55.56 Aligned_cols=83 Identities=19% Similarity=0.177 Sum_probs=51.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCC-Ccc-ceeeeeeEEEEEEe----------C----CeEEEEEEEeCCCccc---
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSG-SYI-TTIGVDFKIRTIDV----------N----GEKVKLQIWDTAGQER--- 102 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~-~~~-~t~~~~~~~~~~~~----------~----~~~~~l~l~D~~g~~~--- 102 (188)
+++-+||.++||||||.+.+....-.. .|. .|+..+.....++. . -....+.++|+.|--.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 489999999999999999998665321 221 23333332222211 1 1346789999987321
Q ss_pred -ccccch---hccccCCEEEEEEeCC
Q psy1417 103 -FRTITS---TYYRGTHGVIVVYDVT 124 (188)
Q Consensus 103 -~~~~~~---~~~~~~~~vilv~d~~ 124 (188)
-..+-. .-++.+|+++-|+|+.
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEec
Confidence 112222 2267799999999877
No 358
>KOG1143|consensus
Probab=97.46 E-value=0.00023 Score=58.17 Aligned_cols=123 Identities=16% Similarity=0.224 Sum_probs=77.5
Q ss_pred CCCCCCCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCC-----------------------ccceeeeeeEEEEEEeC-
Q psy1417 31 RGKNGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGS-----------------------YITTIGVDFKIRTIDVN- 86 (188)
Q Consensus 31 ~~~~~~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~-----------------------~~~t~~~~~~~~~~~~~- 86 (188)
+.-.+....++++++++|-..+|||||+-.|..+..... ...++|.+...+.+++.
T Consensus 157 RKvPd~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~ 236 (591)
T KOG1143|consen 157 RKVPDSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQ 236 (591)
T ss_pred hhCCCcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhh
Confidence 444556667888999999999999999988875433221 11223433333344432
Q ss_pred ---------CeEEEEEEEeCCCcccccccchhcccc--CCEEEEEEeCCChhhHHHH--HHHHHHHHhhCCCceEEE-EE
Q psy1417 87 ---------GEKVKLQIWDTAGQERFRTITSTYYRG--THGVIVVYDVTSGETFANV--KRWLHEIENNCEVVNRIL-GL 152 (188)
Q Consensus 87 ---------~~~~~l~l~D~~g~~~~~~~~~~~~~~--~~~vilv~d~~~~~s~~~~--~~~~~~i~~~~~~~pilv-gn 152 (188)
...--+++.|..|+.+|....-.-+.. .|..++|++++.......- ...+..+ ++|..| .+
T Consensus 237 ~~taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL-----~iPfFvlvt 311 (591)
T KOG1143|consen 237 NMTAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAAL-----NIPFFVLVT 311 (591)
T ss_pred cccHHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHh-----CCCeEEEEE
Confidence 223457899999999887554444433 5788888888765443221 1222222 389888 99
Q ss_pred cCCCCC
Q psy1417 153 RLGLNQ 158 (188)
Q Consensus 153 K~Dl~~ 158 (188)
|.|+-+
T Consensus 312 K~Dl~~ 317 (591)
T KOG1143|consen 312 KMDLVD 317 (591)
T ss_pred eecccc
Confidence 999933
No 359
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.46 E-value=0.0007 Score=56.41 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=50.7
Q ss_pred EEEEEEeCCCcccccccchhccccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHh--hCCCceEEE-EEcCCC
Q psy1417 90 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSG----------ETFANVKRWLHEIEN--NCEVVNRIL-GLRLGL 156 (188)
Q Consensus 90 ~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~----------~s~~~~~~~~~~i~~--~~~~~pilv-gnK~Dl 156 (188)
..+.++|++|+..-+..|.+++.+.++||+|+++++- ..+.+....+..+.+ ...+.|++| .||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 6689999999988888999999999999999998732 224444445455554 335689888 999997
No 360
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.45 E-value=0.001 Score=54.02 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=18.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|+++|++|+||||++..+..
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 678999999999999999863
No 361
>KOG0469|consensus
Probab=97.45 E-value=0.00052 Score=58.09 Aligned_cols=120 Identities=19% Similarity=0.255 Sum_probs=79.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC------------CCCCc--cceeeeeeEEEEEE----------------eCCeEEEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT------------FSGSY--ITTIGVDFKIRTID----------------VNGEKVKL 92 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~------------~~~~~--~~t~~~~~~~~~~~----------------~~~~~~~l 92 (188)
++.++..-.-|||||...|.... |.+.. ...-+....+.-+. -++..+-+
T Consensus 21 NmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLi 100 (842)
T KOG0469|consen 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLI 100 (842)
T ss_pred cceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeE
Confidence 78999999999999999987321 11110 01112222222221 13556789
Q ss_pred EEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcCCC--CCccchhh
Q psy1417 93 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGL--NQRSIDEV 164 (188)
Q Consensus 93 ~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~Dl--~~~~i~~~ 164 (188)
++.|.||+-.|.......++-.|+.+.|+|.-+....+.-.-....+.+.. .|+++.||.|. -+-+++.+
T Consensus 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERI--kPvlv~NK~DRAlLELq~~~E 172 (842)
T KOG0469|consen 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERI--KPVLVMNKMDRALLELQLSQE 172 (842)
T ss_pred EeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhc--cceEEeehhhHHHHhhcCCHH
Confidence 999999999999999999999999999999877655444333333333322 79999999996 33444444
No 362
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.45 E-value=0.0017 Score=47.24 Aligned_cols=54 Identities=22% Similarity=0.366 Sum_probs=36.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCC
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTA 98 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~ 98 (188)
.||.+.|++||||||++.++.+.--. . .-+++ -+....+.-+|+.+-+.+.|+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~-~-g~kvg-Gf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLRE-K-GYKVG-GFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHh-c-Cceee-eEEeeeeecCCeEeeeEEEEcc
Confidence 39999999999999999999743111 1 12233 2444555567777778888776
No 363
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.0019 Score=53.44 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.++++|++||||||++..|..
T Consensus 139 ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999999974
No 364
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.38 E-value=0.00088 Score=55.44 Aligned_cols=108 Identities=14% Similarity=0.188 Sum_probs=57.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceee-----------------------eeeEEEEEEe-------CCeEEEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIG-----------------------VDFKIRTIDV-------NGEKVKL 92 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~-----------------------~~~~~~~~~~-------~~~~~~l 92 (188)
.|++||++||||||-+-.|...-.-..-...++ .+.....-.- .-..+.+
T Consensus 205 vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d~ 284 (407)
T COG1419 205 VIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCDV 284 (407)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCCE
Confidence 679999999999998888753221011112222 1110000000 0133578
Q ss_pred EEEeCCCccccccc----chhcccc--CCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceE--EEEEcCCC
Q psy1417 93 QIWDTAGQERFRTI----TSTYYRG--THGVIVVYDVTSGETFANVKRWLHEIENNCEVVNR--ILGLRLGL 156 (188)
Q Consensus 93 ~l~D~~g~~~~~~~----~~~~~~~--~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pi--lvgnK~Dl 156 (188)
.+.||.|...+... ...++.. ..-+.||++++.. .+.+..-++ .+..+|+ +|.||.|.
T Consensus 285 ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~----~f~~~~i~~~I~TKlDE 350 (407)
T COG1419 285 ILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIK----QFSLFPIDGLIFTKLDE 350 (407)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHH----HhccCCcceeEEEcccc
Confidence 99999997554322 2223332 2356777887764 333433333 3334454 66999996
No 365
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.36 E-value=0.0019 Score=53.72 Aligned_cols=134 Identities=13% Similarity=0.157 Sum_probs=69.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCC----C------CC-----------ccceeeeeeEEEEEE------e---C-CeEEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTF----S------GS-----------YITTIGVDFKIRTID------V---N-GEKVK 91 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~----~------~~-----------~~~t~~~~~~~~~~~------~---~-~~~~~ 91 (188)
+|+++|++||||||++..|...-. . +. +....+..+....-. + . ...+.
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~D 322 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVD 322 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCC
Confidence 789999999999999999963100 0 00 000111111100000 0 0 11367
Q ss_pred EEEEeCCCcccccc----cchhcc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcCCCCCccchhhh
Q psy1417 92 LQIWDTAGQERFRT----ITSTYY--RGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQRSIDEVN 165 (188)
Q Consensus 92 l~l~D~~g~~~~~~----~~~~~~--~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~Dl~~~~i~~~~ 165 (188)
+.+.||+|...... .....+ ...+.++||.|++... ..+...+..+.. -++--+|.||.|...+.=..-.
T Consensus 323 vVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~--~~idglI~TKLDET~k~G~iLn 398 (436)
T PRK11889 323 YILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD--IHIDGIVFTKFDETASSGELLK 398 (436)
T ss_pred EEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC--CCCCEEEEEcccCCCCccHHHH
Confidence 89999999643221 112222 2356788998876432 233333333332 1233477999997554333335
Q ss_pred hhhcCCCCceEEeec
Q psy1417 166 LCHRGSVDGSVESTS 180 (188)
Q Consensus 166 ~~~~~~~~~~~e~~~ 180 (188)
++...+....+-+.|
T Consensus 399 i~~~~~lPIsyit~G 413 (436)
T PRK11889 399 IPAVSSAPIVLMTDG 413 (436)
T ss_pred HHHHHCcCEEEEeCC
Confidence 555555555555443
No 366
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.36 E-value=0.00094 Score=39.87 Aligned_cols=42 Identities=10% Similarity=0.104 Sum_probs=30.2
Q ss_pred CCEEEEEEeCCChh--hHHHHHHHHHHHHhhCCCceEEE-EEcCC
Q psy1417 114 THGVIVVYDVTSGE--TFANVKRWLHEIENNCEVVNRIL-GLRLG 155 (188)
Q Consensus 114 ~~~vilv~d~~~~~--s~~~~~~~~~~i~~~~~~~pilv-gnK~D 155 (188)
.+++++++|.+... +.+.....+++++..+++.|+++ .||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 67999999999754 56677789999999999999887 99998
No 367
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.35 E-value=0.00035 Score=51.45 Aligned_cols=52 Identities=23% Similarity=0.331 Sum_probs=31.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDT 97 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~ 97 (188)
||++.|++|+|||||+++++..- .....+.-| +....+.-++..+-+.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l-~~~~~~v~G--f~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL-KKKGLPVGG--FYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH-HHTCGGEEE--EEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHh-hccCCccce--EEeecccCCCceEEEEEEEC
Confidence 68999999999999999997431 111112223 33334444555555666665
No 368
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.34 E-value=0.00053 Score=54.82 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=39.0
Q ss_pred chhccccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 107 TSTYYRGTHGVIVVYDVTSGE-TFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 107 ~~~~~~~~~~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
.+..+.++|++++|+|+.++. ++..+..|+..+... ++|+++ +||+|+.
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~--~ip~iIVlNK~DL~ 122 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA--GIEPVIVLTKADLL 122 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc--CCCEEEEEEHHHCC
Confidence 344588999999999999988 888888998877653 355555 9999993
No 369
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.32 E-value=0.00024 Score=48.89 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=19.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.|+|.|.+||||||+++.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999999753
No 370
>KOG0460|consensus
Probab=97.29 E-value=0.00075 Score=54.56 Aligned_cols=121 Identities=15% Similarity=0.134 Sum_probs=73.2
Q ss_pred CCCCCCcccceeEEEEeCCCCCHHHHHHHHHh---C----CC---------CCCccceeeeeeEEEEEEeCCeEEEEEEE
Q psy1417 32 GKNGPTHIFSQKSSFLQLVGVGKSSLLIRFSD---N----TF---------SGSYITTIGVDFKIRTIDVNGEKVKLQIW 95 (188)
Q Consensus 32 ~~~~~~~~~~~ki~vvG~~~~GKssLi~~l~~---~----~~---------~~~~~~t~~~~~~~~~~~~~~~~~~l~l~ 95 (188)
.....+..+++||--+|.-.-|||||-..+.. . ++ +++.. -|..++...+.++-....+.=.
T Consensus 45 ~~~f~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEka--RGITIn~aHveYeTa~RhYaH~ 122 (449)
T KOG0460|consen 45 KAVFVRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKA--RGITINAAHVEYETAKRHYAHT 122 (449)
T ss_pred ccccccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhh--ccceEeeeeeeeeccccccccC
Confidence 34455666788999999999999999877652 1 11 11211 2334444455554444445667
Q ss_pred eCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 96 DTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 96 D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
|+||+..|-...-.--...|+.|+|+.+++..--+. .+-+ .+.++..-.-|+| .||.|+
T Consensus 123 DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQT-rEHl-LLArQVGV~~ivvfiNKvD~ 182 (449)
T KOG0460|consen 123 DCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQT-REHL-LLARQVGVKHIVVFINKVDL 182 (449)
T ss_pred CCCchHHHHHHhhcCccccCceEEEEEcCCCCCcch-HHHH-HHHHHcCCceEEEEEecccc
Confidence 999998875332222456799999999998542111 1111 1333333334666 999998
No 371
>PRK08118 topology modulation protein; Reviewed
Probab=97.27 E-value=0.00025 Score=52.14 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=20.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
||+|+|++|||||||.+.|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999743
No 372
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.27 E-value=0.0018 Score=45.04 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT 65 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~ 65 (188)
-+++.|++|+|||++++.+...-
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998553
No 373
>KOG1424|consensus
Probab=97.22 E-value=0.00042 Score=58.61 Aligned_cols=55 Identities=24% Similarity=0.224 Sum_probs=41.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQ 100 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 100 (188)
+.|-+||-++|||||+||.|.+.+-. ..++|.|-+-.-.++.+.. .+.+.|+||-
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 315 VTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 38999999999999999999987633 4567777655555555432 3678999994
No 374
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.20 E-value=0.0014 Score=54.94 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=19.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.+.++|++|+||||++..|..
T Consensus 193 vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 193 VYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998764
No 375
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.005 Score=53.06 Aligned_cols=21 Identities=14% Similarity=0.398 Sum_probs=19.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+|+|+.|+||||++..|..
T Consensus 352 vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 352 VIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 779999999999999998863
No 376
>PRK07261 topology modulation protein; Provisional
Probab=97.18 E-value=0.00036 Score=51.45 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
+|+|+|.+|+|||||++.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
No 377
>KOG0465|consensus
Probab=97.17 E-value=0.00079 Score=58.04 Aligned_cols=111 Identities=18% Similarity=0.210 Sum_probs=75.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC-----CCCCc--c---------ceeeeeeEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT-----FSGSY--I---------TTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTI 106 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~-----~~~~~--~---------~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~ 106 (188)
+|-++-.-.+||||+-.|++.-. +.+.. . ..-|....+.-.......+.+++.||||+-.|--.
T Consensus 41 NIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~E 120 (721)
T KOG0465|consen 41 NIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFE 120 (721)
T ss_pred ccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEE
Confidence 67788888999999999987321 10000 0 01122222222222234688999999999999988
Q ss_pred chhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 107 TSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 107 ~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
.++.++--|+.+++.+.-....-+...-|.. ..++. +|-+. .||.|.
T Consensus 121 VeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~ry~--vP~i~FiNKmDR 168 (721)
T KOG0465|consen 121 VERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKRYN--VPRICFINKMDR 168 (721)
T ss_pred ehhhhhhccCeEEEEEcccceehhhHHHHHH-HHhcC--CCeEEEEehhhh
Confidence 8899999999999999877665666666743 33333 88877 999996
No 378
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.15 E-value=0.00041 Score=49.06 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=18.4
Q ss_pred EEEEeCCCCCHHHHHHHHHh
Q psy1417 44 SSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~~ 63 (188)
|+++|++||||||+++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999973
No 379
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.15 E-value=0.00039 Score=51.66 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
||+|+|++|+||||++++|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999865
No 380
>PRK14974 cell division protein FtsY; Provisional
Probab=97.14 E-value=0.0027 Score=51.88 Aligned_cols=87 Identities=11% Similarity=0.074 Sum_probs=45.4
Q ss_pred EEEEEEeCCCcccccc----cchhcc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcCCCCCccchh
Q psy1417 90 VKLQIWDTAGQERFRT----ITSTYY--RGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQRSIDE 163 (188)
Q Consensus 90 ~~l~l~D~~g~~~~~~----~~~~~~--~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~Dl~~~~i~~ 163 (188)
+.+.+.||+|...... ...... ...+.+++|.|+...+..-. ....+.+. -++--+|.||.|...+.=..
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~---~a~~f~~~-~~~~giIlTKlD~~~~~G~~ 298 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVE---QAREFNEA-VGIDGVILTKVDADAKGGAA 298 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHH---HHHHHHhc-CCCCEEEEeeecCCCCccHH
Confidence 5689999999653221 111211 24688899999876432211 11222211 12456779999984432222
Q ss_pred hhhhhcCCCCceEEeec
Q psy1417 164 VNLCHRGSVDGSVESTS 180 (188)
Q Consensus 164 ~~~~~~~~~~~~~e~~~ 180 (188)
-..+...+....+-+.+
T Consensus 299 ls~~~~~~~Pi~~i~~G 315 (336)
T PRK14974 299 LSIAYVIGKPILFLGVG 315 (336)
T ss_pred HHHHHHHCcCEEEEeCC
Confidence 23334444554444443
No 381
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.12 E-value=0.00075 Score=50.41 Aligned_cols=50 Identities=16% Similarity=0.051 Sum_probs=35.4
Q ss_pred ccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 103 FRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 103 ~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
+..++..+++++|++++|+|+++... .|...+.....+.|+++ +||+|+.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~~~~~~ilV~NK~Dl~ 74 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFGGNNPVILVGNKIDLL 74 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhcCCCcEEEEEEchhcC
Confidence 56777888999999999999987542 13333333334567666 9999983
No 382
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.11 E-value=0.00085 Score=47.71 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=32.2
Q ss_pred hccccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 109 TYYRGTHGVIVVYDVTSGETFA--NVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 109 ~~~~~~~~vilv~d~~~~~s~~--~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
..++++|++++|+|+.++.+.. .+..|+... ..+.|+++ .||+|+
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL 54 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADL 54 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhc
Confidence 3578899999999998876543 344554433 24567766 999998
No 383
>KOG0447|consensus
Probab=97.11 E-value=0.0032 Score=54.03 Aligned_cols=66 Identities=14% Similarity=0.232 Sum_probs=39.0
Q ss_pred EEEEEeCCCc-------------ccccccchhccccCCEEEEEEeCCChhh-HHHHHHHHHHHHhhCCCceEEEEEcCCC
Q psy1417 91 KLQIWDTAGQ-------------ERFRTITSTYYRGTHGVIVVYDVTSGET-FANVKRWLHEIENNCEVVNRILGLRLGL 156 (188)
Q Consensus 91 ~l~l~D~~g~-------------~~~~~~~~~~~~~~~~vilv~d~~~~~s-~~~~~~~~~~i~~~~~~~pilvgnK~Dl 156 (188)
...+.|.||- +..-.+...++.+.+++|+|+.-.+-+. -..+.+....+.-. ..-.|+|.+|.|+
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~-GrRTIfVLTKVDl 491 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPH-GRRTIFVLTKVDL 491 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCC-CCeeEEEEeecch
Confidence 4678899982 2234566778899999999985332221 11223332222211 1246777999999
Q ss_pred C
Q psy1417 157 N 157 (188)
Q Consensus 157 ~ 157 (188)
.
T Consensus 492 A 492 (980)
T KOG0447|consen 492 A 492 (980)
T ss_pred h
Confidence 3
No 384
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.10 E-value=0.00072 Score=55.77 Aligned_cols=78 Identities=12% Similarity=0.165 Sum_probs=51.0
Q ss_pred cccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCccc--hhh-----hhhhcCC
Q psy1417 100 QERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSI--DEV-----NLCHRGS 171 (188)
Q Consensus 100 ~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i--~~~-----~~~~~~~ 171 (188)
.+.|..+...+.+.++++++|+|+.+.. ..|.+++.+...+.|+++ +||+|+-.+.+ ++. +.+.+.+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g 124 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELG 124 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcC
Confidence 4567777888888999999999987654 236667766655667766 99999832322 111 2344455
Q ss_pred CC--ceEEeeccc
Q psy1417 172 VD--GSVESTSVD 182 (188)
Q Consensus 172 ~~--~~~e~~~~~ 182 (188)
.. ..+.+|+++
T Consensus 125 ~~~~~i~~vSAk~ 137 (360)
T TIGR03597 125 LKPVDIILVSAKK 137 (360)
T ss_pred CCcCcEEEecCCC
Confidence 42 466666554
No 385
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.07 E-value=0.0024 Score=45.35 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=60.8
Q ss_pred EEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEeCC
Q psy1417 45 SFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVT 124 (188)
Q Consensus 45 ~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~ 124 (188)
+.-|..|+|||++...+...-- ....++.-.+.. .....-.+.+.++|+++.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 4567889999999888753210 111111111110 0001111678999999643 223345688899999999866
Q ss_pred ChhhHHHHHHHHHHHHhhCCCceE-EEEEcCCC
Q psy1417 125 SGETFANVKRWLHEIENNCEVVNR-ILGLRLGL 156 (188)
Q Consensus 125 ~~~s~~~~~~~~~~i~~~~~~~pi-lvgnK~Dl 156 (188)
..++..+...+..+.+.....++ +|.|+.+-
T Consensus 78 -~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 78 -PTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred -hhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 45566655555556554433444 55999985
No 386
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.06 E-value=0.0062 Score=51.36 Aligned_cols=88 Identities=13% Similarity=0.110 Sum_probs=44.1
Q ss_pred EEEEEEEeCCCccccc----ccchhccc---cCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcCCCCCccc
Q psy1417 89 KVKLQIWDTAGQERFR----TITSTYYR---GTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQRSI 161 (188)
Q Consensus 89 ~~~l~l~D~~g~~~~~----~~~~~~~~---~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~Dl~~~~i 161 (188)
.+.+.+.|++|..... .....++. ...-+.+|.+.+.. ...+...+..+.... +--+|.||.|.....=
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~~--~~~vI~TKlDet~~~G 374 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRLP--LDGLIFTKLDETSSLG 374 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCCC--CCEEEEeccccccccc
Confidence 3678999999964432 11222233 23466788887643 222232222222111 2236699999733322
Q ss_pred hhhhhhhcCCCCceEEeec
Q psy1417 162 DEVNLCHRGSVDGSVESTS 180 (188)
Q Consensus 162 ~~~~~~~~~~~~~~~e~~~ 180 (188)
.-.......+....+-+.|
T Consensus 375 ~i~~~~~~~~lPv~yit~G 393 (424)
T PRK05703 375 SILSLLIESGLPISYLTNG 393 (424)
T ss_pred HHHHHHHHHCCCEEEEeCC
Confidence 2334455555555554443
No 387
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.00 E-value=0.00056 Score=57.23 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=19.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-++++|++||||||++.+|..
T Consensus 225 vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999974
No 388
>PRK12289 GTPase RsgA; Reviewed
Probab=96.99 E-value=0.0023 Score=52.62 Aligned_cols=48 Identities=13% Similarity=0.172 Sum_probs=35.3
Q ss_pred chhccccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 107 TSTYYRGTHGVIVVYDVTSGE-TFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 107 ~~~~~~~~~~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
....+.++|.+++|+|+.++. +...+..|+..+.. .++|++| +||+|+
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~--~~ip~ILVlNK~DL 132 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES--TGLEIVLCLNKADL 132 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEchhc
Confidence 344578999999999998765 45566778776633 3466555 999998
No 389
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.0049 Score=51.07 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=18.5
Q ss_pred eEEEEeCCCCCHHHHHHHHH
Q psy1417 43 KSSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~ 62 (188)
.++++|+.||||||++..+.
T Consensus 208 ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 67899999999999999986
No 390
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.96 E-value=0.00051 Score=50.00 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=17.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999754
No 391
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.94 E-value=0.00098 Score=40.62 Aligned_cols=21 Identities=29% Similarity=0.252 Sum_probs=18.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
..+|.|+.|+|||||+..+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 369999999999999998863
No 392
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.92 E-value=0.0041 Score=50.46 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
=.++.|--|+|||||+++++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3578999999999999999854
No 393
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.92 E-value=0.0059 Score=50.93 Aligned_cols=110 Identities=15% Similarity=0.070 Sum_probs=67.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC---CCCC--ccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT---FSGS--YITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 117 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~---~~~~--~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~v 117 (188)
-|...|.-.-|||||++.+.+.. .+++ ...|+...+++.. -....+.+.|.||++++-...-.-+...|..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~----~~d~~~~fIDvpgh~~~i~~miag~~~~d~a 77 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRK----LEDGVMGFIDVPGHPDFISNLLAGLGGIDYA 77 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEecc----CCCCceEEeeCCCcHHHHHHHHhhhcCCceE
Confidence 36778999999999999997543 2222 2233443343222 2334789999999998865555556788999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcCCCC
Q psy1417 118 IVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLN 157 (188)
Q Consensus 118 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~Dl~ 157 (188)
++|++.++.-..+... .+.-+.-..-.--+++.||+|..
T Consensus 78 lLvV~~deGl~~qtgE-hL~iLdllgi~~giivltk~D~~ 116 (447)
T COG3276 78 LLVVAADEGLMAQTGE-HLLILDLLGIKNGIIVLTKADRV 116 (447)
T ss_pred EEEEeCccCcchhhHH-HHHHHHhcCCCceEEEEeccccc
Confidence 9999997543222221 11112222212235559999983
No 394
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.92 E-value=0.0044 Score=41.41 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=51.0
Q ss_pred EEEEe-CCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 44 SSFLQ-LVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 44 i~vvG-~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
|++.| ..|+||||+...+...- .....+. ..+..+. .+.+.++|+|+.... .....+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~-~~~~~~v-------l~~d~d~-~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAAL-ARRGKRV-------LLIDLDP-QYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH-HhCCCcE-------EEEeCCC-CCCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence 46666 56999999998875221 1111121 1222221 267899999975432 23356788999999987
Q ss_pred CCChhhHHHHHHHHH
Q psy1417 123 VTSGETFANVKRWLH 137 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~ 137 (188)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 54 556777776665
No 395
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.91 E-value=0.0085 Score=50.69 Aligned_cols=86 Identities=16% Similarity=0.133 Sum_probs=45.2
Q ss_pred EEEEEEeCCCccccccc----chh--ccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcCCCCCccchh
Q psy1417 90 VKLQIWDTAGQERFRTI----TST--YYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQRSIDE 163 (188)
Q Consensus 90 ~~l~l~D~~g~~~~~~~----~~~--~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~Dl~~~~i~~ 163 (188)
..+.+.||+|....... ... ....++.+++|+|++..+ .+......+.+.. ++--+|.||.|...+-=..
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l-~i~gvIlTKlD~~a~~G~~ 251 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV-GIGGIIITKLDGTAKGGGA 251 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC-CCCEEEEecccCCCcccHH
Confidence 47899999996543211 111 133578899999987653 2222223333221 1223558999975443222
Q ss_pred hhhhhcCCCCceEEee
Q psy1417 164 VNLCHRGSVDGSVEST 179 (188)
Q Consensus 164 ~~~~~~~~~~~~~e~~ 179 (188)
-......+....|-.+
T Consensus 252 ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 252 LSAVAETGAPIKFIGT 267 (437)
T ss_pred HHHHHHHCcCEEEEec
Confidence 2344444444444443
No 396
>KOG0066|consensus
Probab=96.88 E-value=0.0054 Score=51.56 Aligned_cols=97 Identities=18% Similarity=0.165 Sum_probs=56.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEE---------------------------eC---------
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTID---------------------------VN--------- 86 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~---------------------------~~--------- 86 (188)
+|+|||+.|||||||+..|++.--+ +-|......++. +.
T Consensus 615 RiaIVGPNGVGKSTlLkLL~Gkl~P-----~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG 689 (807)
T KOG0066|consen 615 RIAIVGPNGVGKSTLLKLLIGKLDP-----NDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLG 689 (807)
T ss_pred eeEEECCCCccHHHHHHHHhcCCCC-----CcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhh
Confidence 7899999999999999998854211 111111111111 00
Q ss_pred -----CeEEEEEEEeCCCccccc-ccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCC
Q psy1417 87 -----GEKVKLQIWDTAGQERFR-TITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEV 145 (188)
Q Consensus 87 -----~~~~~l~l~D~~g~~~~~-~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~ 145 (188)
..--.+.+-|.+|.+.-+ ...+.++...|++|+=- .++.--++.+....+.|+.+...
T Consensus 690 ~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDE-PTNNLDIESIDALaEAIney~Gg 753 (807)
T KOG0066|consen 690 TFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDE-PTNNLDIESIDALAEAINEYNGG 753 (807)
T ss_pred hhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecC-CCCCcchhhHHHHHHHHHhccCc
Confidence 112346778888765443 55677788888777633 34433355555566666665544
No 397
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.86 E-value=0.0012 Score=41.04 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=18.7
Q ss_pred EEEEeCCCCCHHHHHHHHHhC
Q psy1417 44 SSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~~~ 64 (188)
|++.|.+|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999743
No 398
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.85 E-value=0.0064 Score=48.19 Aligned_cols=133 Identities=13% Similarity=0.143 Sum_probs=68.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCC---------------------CccceeeeeeEEEEEE---------e-CCeEEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSG---------------------SYITTIGVDFKIRTID---------V-NGEKVK 91 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~---------------------~~~~t~~~~~~~~~~~---------~-~~~~~~ 91 (188)
+++++|++|+||||++..+...-... .+....+.++....-. . ....+.
T Consensus 77 ~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D 156 (270)
T PRK06731 77 TIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVD 156 (270)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCC
Confidence 89999999999999999885321000 0111112111110000 0 012468
Q ss_pred EEEEeCCCccccc-cc---chhcc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcCCCCCccchhhh
Q psy1417 92 LQIWDTAGQERFR-TI---TSTYY--RGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQRSIDEVN 165 (188)
Q Consensus 92 l~l~D~~g~~~~~-~~---~~~~~--~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~Dl~~~~i~~~~ 165 (188)
+.+.|++|..... .. +..++ ...+-+++|.|++.. .+.+..++..+.. -.+-=+|.||.|...+.=.--.
T Consensus 157 ~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~--~~~~~~I~TKlDet~~~G~~l~ 232 (270)
T PRK06731 157 YILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD--IHIDGIVFTKFDETASSGELLK 232 (270)
T ss_pred EEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC--CCCCEEEEEeecCCCCccHHHH
Confidence 8999999975321 11 11122 234578999997742 2233333333332 1233467999997544333334
Q ss_pred hhhcCCCCceEEee
Q psy1417 166 LCHRGSVDGSVEST 179 (188)
Q Consensus 166 ~~~~~~~~~~~e~~ 179 (188)
++...+....+-+.
T Consensus 233 ~~~~~~~Pi~~it~ 246 (270)
T PRK06731 233 IPAVSSAPIVLMTD 246 (270)
T ss_pred HHHHHCcCEEEEeC
Confidence 55555555554444
No 399
>PRK06217 hypothetical protein; Validated
Probab=96.82 E-value=0.0011 Score=49.20 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=20.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
+|+|+|.+|+||||+.++|...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999754
No 400
>PRK10867 signal recognition particle protein; Provisional
Probab=96.82 E-value=0.011 Score=49.83 Aligned_cols=87 Identities=13% Similarity=0.095 Sum_probs=44.6
Q ss_pred EEEEEEEeCCCcccccc----cchhc--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcCCCCCccch
Q psy1417 89 KVKLQIWDTAGQERFRT----ITSTY--YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQRSID 162 (188)
Q Consensus 89 ~~~l~l~D~~g~~~~~~----~~~~~--~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~Dl~~~~i~ 162 (188)
.+.+.+.||+|...... ....+ .-..+.+++|.|.... +.+......+.+.. ++--+|.||.|...+.=.
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~-~i~giIlTKlD~~~rgG~ 258 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL-GLTGVILTKLDGDARGGA 258 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC-CCCEEEEeCccCcccccH
Confidence 46789999999543211 11111 1246778999998653 23333333444322 123456899997433222
Q ss_pred hhhhhhcCCCCceEEee
Q psy1417 163 EVNLCHRGSVDGSVEST 179 (188)
Q Consensus 163 ~~~~~~~~~~~~~~e~~ 179 (188)
........+....|-..
T Consensus 259 alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 259 ALSIRAVTGKPIKFIGT 275 (433)
T ss_pred HHHHHHHHCcCEEEEeC
Confidence 33344444444444333
No 401
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.82 E-value=0.0097 Score=44.18 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.+.++|+.|+|||||++.+.+-
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 6789999999999999988754
No 402
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.81 E-value=0.0012 Score=46.44 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++|+|+.|+|||||++.+.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 6799999999999999988644
No 403
>PRK00098 GTPase RsgA; Reviewed
Probab=96.79 E-value=0.0037 Score=50.22 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=34.4
Q ss_pred ccccCCEEEEEEeCCChhhHHH-HHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 110 YYRGTHGVIVVYDVTSGETFAN-VKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 110 ~~~~~~~vilv~d~~~~~s~~~-~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
...++|++++|+|+.++..+.. +..|+..+.. .++|+++ +||+|+.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~ 124 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLL 124 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcC
Confidence 4688999999999988876555 4678777654 2455555 9999994
No 404
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.77 E-value=0.014 Score=49.33 Aligned_cols=88 Identities=11% Similarity=0.099 Sum_probs=46.9
Q ss_pred EEEEEEEeCCCccccccc----chhc--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcCCCCCccch
Q psy1417 89 KVKLQIWDTAGQERFRTI----TSTY--YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQRSID 162 (188)
Q Consensus 89 ~~~l~l~D~~g~~~~~~~----~~~~--~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~Dl~~~~i~ 162 (188)
.+.+.+.||+|....... ...+ .-..+.+++|+|.+.. +.+..+...+.... ++-=+|.||.|...+.=.
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v-~i~giIlTKlD~~~~~G~ 257 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL-GLTGVVLTKLDGDARGGA 257 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC-CCCEEEEeCccCcccccH
Confidence 467899999995332111 1111 2246788999998754 33344444444332 233456899996433222
Q ss_pred hhhhhhcCCCCceEEeec
Q psy1417 163 EVNLCHRGSVDGSVESTS 180 (188)
Q Consensus 163 ~~~~~~~~~~~~~~e~~~ 180 (188)
........+....|-.++
T Consensus 258 ~lsi~~~~~~PI~fi~~G 275 (428)
T TIGR00959 258 ALSVRSVTGKPIKFIGVG 275 (428)
T ss_pred HHHHHHHHCcCEEEEeCC
Confidence 334444445555444443
No 405
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.77 E-value=0.0017 Score=46.79 Aligned_cols=50 Identities=10% Similarity=0.046 Sum_probs=32.1
Q ss_pred cccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 104 RTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 104 ~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
+.+.++.++++|++++|+|++++...... .+...+.. .+.|+++ +||+|+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~--~~~p~iiv~NK~Dl 53 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE--LGKKLLIVLNKADL 53 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh--CCCcEEEEEEhHHh
Confidence 44567778889999999999875432221 12222221 2467666 999998
No 406
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.76 E-value=0.0012 Score=49.41 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=19.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
=|+|+|++|||||||+++|+..
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3689999999999999999864
No 407
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.75 E-value=0.0012 Score=51.16 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=19.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
=++++|++|||||||++-+.+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999988753
No 408
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.75 E-value=0.0016 Score=44.96 Aligned_cols=21 Identities=14% Similarity=0.349 Sum_probs=18.9
Q ss_pred EEEEeCCCCCHHHHHHHHHhC
Q psy1417 44 SSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~~~ 64 (188)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999744
No 409
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.73 E-value=0.0015 Score=45.21 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=19.0
Q ss_pred EEEEeCCCCCHHHHHHHHHhC
Q psy1417 44 SSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~~~ 64 (188)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999754
No 410
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.73 E-value=0.0015 Score=46.41 Aligned_cols=21 Identities=38% Similarity=0.483 Sum_probs=18.9
Q ss_pred EEEEeCCCCCHHHHHHHHHhC
Q psy1417 44 SSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~~~ 64 (188)
|+++|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 589999999999999999853
No 411
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.71 E-value=0.0015 Score=48.23 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++|+|++|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999998754
No 412
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.70 E-value=0.0017 Score=46.32 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-|.|+|..++|||||+..|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999843
No 413
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.70 E-value=0.0013 Score=48.90 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT 65 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~ 65 (188)
=+++.|++|||||||++.|+...
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 35899999999999999998664
No 414
>KOG1487|consensus
Probab=96.69 E-value=0.01 Score=46.52 Aligned_cols=87 Identities=25% Similarity=0.313 Sum_probs=53.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCC--ccceeeeeeEEEEEEeCCeEEEEEEEeCCCccc------ccc-cchhcccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGS--YITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER------FRT-ITSTYYRG 113 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~------~~~-~~~~~~~~ 113 (188)
+|-++|-+++||||++..+.+. +.+. |.-| ....-.-.+.+++ -++.+.|.||--+ -+. ..-...+-
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~-~s~vasyeft-tl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGT-FSEVAAYEFT-TLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred eeeEEecCccchhhhhhhhcCC-CCccccccce-eEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeec
Confidence 7889999999999999999743 2221 1111 0001111223444 4689999998321 111 11123466
Q ss_pred CCEEEEEEeCCChhhHHHHH
Q psy1417 114 THGVIVVYDVTSGETFANVK 133 (188)
Q Consensus 114 ~~~vilv~d~~~~~s~~~~~ 133 (188)
|+.+++|.|+..+-+...+.
T Consensus 137 cnli~~vld~~kp~~hk~~i 156 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPLSHKKII 156 (358)
T ss_pred ccEEEEEeeccCcccHHHHH
Confidence 89999999999988877764
No 415
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.65 E-value=0.015 Score=44.93 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=29.1
Q ss_pred ccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 110 YYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 110 ~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
..+++|.++.|+|.+. +++..+.+. .++.....-.++.+ .||.|-.
T Consensus 152 ~~~~vD~vivVvDpS~-~sl~taeri-~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 152 TIEGVDLVIVVVDPSY-KSLRTAERI-KELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cccCCCEEEEEeCCcH-HHHHHHHHH-HHHHHHhCCceEEEEEeeccch
Confidence 3567999999999874 455555543 33333333345555 9999953
No 416
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.64 E-value=0.0018 Score=48.28 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6799999999999999999644
No 417
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=96.63 E-value=0.014 Score=49.48 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=17.5
Q ss_pred EEEeCCCCCHHHHHHHHHh
Q psy1417 45 SFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 45 ~vvG~~~~GKssLi~~l~~ 63 (188)
+++|..|+|||||.+-|.+
T Consensus 34 aLLGENGAGKSTLm~iL~G 52 (501)
T COG3845 34 ALLGENGAGKSTLMKILFG 52 (501)
T ss_pred EEeccCCCCHHHHHHHHhC
Confidence 6999999999999999874
No 418
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.63 E-value=0.002 Score=44.32 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT 65 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~ 65 (188)
.++++|++|+|||+++..+...-
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 4 VILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhcc
Confidence 78999999999999999998553
No 419
>PRK14530 adenylate kinase; Provisional
Probab=96.63 E-value=0.0019 Score=49.33 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
+|+|+|.+||||||+.+.|..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999963
No 420
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.63 E-value=0.0017 Score=47.84 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=19.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-|+++|++|+|||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5799999999999999999853
No 421
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.62 E-value=0.0021 Score=45.38 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999744
No 422
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.62 E-value=0.021 Score=51.31 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=18.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|+++|++||||||.+..|..
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 468999999999999999873
No 423
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.61 E-value=0.0024 Score=48.71 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=19.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT 65 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~ 65 (188)
.++++|++|+|||||++.+-.-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 67999999999999999986443
No 424
>PRK03839 putative kinase; Provisional
Probab=96.60 E-value=0.002 Score=47.60 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
+|+++|.+|+||||+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999743
No 425
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.57 E-value=0.0028 Score=48.10 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-|+|+|++|||||||++.|...
T Consensus 15 ~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 15 LVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred EEEEECcCCCCHHHHHHHHHhc
Confidence 5789999999999999999743
No 426
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.56 E-value=0.0019 Score=50.64 Aligned_cols=20 Identities=35% Similarity=0.458 Sum_probs=18.4
Q ss_pred EEEEeCCCCCHHHHHHHHHh
Q psy1417 44 SSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~~ 63 (188)
++++|+.|||||||++.+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999975
No 427
>KOG0463|consensus
Probab=96.56 E-value=0.0045 Score=50.91 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=27.5
Q ss_pred CCCCCCCcccceeEEEEeCCCCCHHHHHHHHHhC
Q psy1417 31 RGKNGPTHIFSQKSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 31 ~~~~~~~~~~~~ki~vvG~~~~GKssLi~~l~~~ 64 (188)
+......++++.+++++|.-.+|||||+-.|..+
T Consensus 123 Rk~~~~~DF~E~RVAVVGNVDAGKSTLLGVLTHg 156 (641)
T KOG0463|consen 123 RKPPTEKDFIEARVAVVGNVDAGKSTLLGVLTHG 156 (641)
T ss_pred eCCCCCccceeEEEEEEecccCCcceeEeeeeec
Confidence 4455667788899999999999999998766533
No 428
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.54 E-value=0.002 Score=49.54 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=18.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-++|+|++|||||||++-+..
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 468999999999999998853
No 429
>PRK13949 shikimate kinase; Provisional
Probab=96.52 E-value=0.0025 Score=46.87 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
+|+++|.+|+||||+.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 430
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.50 E-value=0.01 Score=41.95 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-|++.|+.|+|||||++.+...
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999865
No 431
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.49 E-value=0.0024 Score=49.63 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=21.8
Q ss_pred cccceeEEEEeCCCCCHHHHHHHHHhC
Q psy1417 38 HIFSQKSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 38 ~~~~~ki~vvG~~~~GKssLi~~l~~~ 64 (188)
..+ +++|+|.+|+|||+|+..++..
T Consensus 12 ~~f--r~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 12 DPF--RMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCc--eEEEECCCCCCHHHHHHHHHHh
Confidence 345 9999999999999999999854
No 432
>KOG3347|consensus
Probab=96.49 E-value=0.0025 Score=45.81 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=20.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
||+|.|-+|+|||||..++..
T Consensus 9 NILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHH
Confidence 999999999999999999974
No 433
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.49 E-value=0.03 Score=36.12 Aligned_cols=77 Identities=16% Similarity=0.134 Sum_probs=46.8
Q ss_pred EEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccccc-chhccccCCEEEEEEe
Q psy1417 44 SSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTI-TSTYYRGTHGVIVVYD 122 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~-~~~~~~~~~~vilv~d 122 (188)
+++.|..|+|||+++..+...--.. | +. ...++ .+.+.|+++....... .......++.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~------g--~~--v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR------G--KR--VLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC------C--Ce--EEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 5788999999999999986331111 1 11 11122 5788999876433221 1345667899999887
Q ss_pred CCChhhHHHHHHH
Q psy1417 123 VTSGETFANVKRW 135 (188)
Q Consensus 123 ~~~~~s~~~~~~~ 135 (188)
... .+.......
T Consensus 68 ~~~-~~~~~~~~~ 79 (99)
T cd01983 68 PEA-LAVLGARRL 79 (99)
T ss_pred Cch-hhHHHHHHH
Confidence 664 345454443
No 434
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.49 E-value=0.0024 Score=47.23 Aligned_cols=20 Identities=15% Similarity=0.054 Sum_probs=18.8
Q ss_pred eEEEEeCCCCCHHHHHHHHH
Q psy1417 43 KSSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~ 62 (188)
-|+++|.+||||||+++.+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 67999999999999999997
No 435
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.48 E-value=0.025 Score=46.01 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=18.8
Q ss_pred EEEEeCCCCCHHHHHHHHHhCC
Q psy1417 44 SSFLQLVGVGKSSLLIRFSDNT 65 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~~~~ 65 (188)
.++-|-=|+|||||+++++.+.
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~ 25 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANR 25 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhcc
Confidence 4678888999999999999654
No 436
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.46 E-value=0.0028 Score=47.00 Aligned_cols=20 Identities=25% Similarity=0.164 Sum_probs=18.6
Q ss_pred eEEEEeCCCCCHHHHHHHHH
Q psy1417 43 KSSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~ 62 (188)
.++++|+.|+|||||++.++
T Consensus 23 ~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 67999999999999999886
No 437
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.45 E-value=0.015 Score=47.74 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=20.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.+|+|+|++|+|||||++.++..
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcc
Confidence 48999999999999999999854
No 438
>PRK14531 adenylate kinase; Provisional
Probab=96.44 E-value=0.0031 Score=46.92 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
+|+++|.+|+||||+.+++..
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999964
No 439
>PRK14532 adenylate kinase; Provisional
Probab=96.44 E-value=0.0029 Score=47.05 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
+|+++|.+||||||+.+++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 440
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.44 E-value=0.0028 Score=47.80 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=19.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-|+|+|++|+|||||++.+.+.
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5799999999999999999754
No 441
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.43 E-value=0.0031 Score=43.73 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=18.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++|.|++|+|||++++++...
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999854
No 442
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.43 E-value=0.0079 Score=44.87 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=20.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT 65 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~ 65 (188)
.++|+|++|+|||||+|-+.+-.
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhcc
Confidence 78999999999999999886543
No 443
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.42 E-value=0.0079 Score=52.07 Aligned_cols=104 Identities=13% Similarity=0.150 Sum_probs=0.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEE--------------------------------
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKV-------------------------------- 90 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-------------------------------- 90 (188)
||.+||..|+|||||++-+.+...+..-.-+.......-.+..+-...
T Consensus 31 riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~ 110 (530)
T COG0488 31 RIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLAD 110 (530)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhccc
Q ss_pred -------------------------------------EEEEEeCCCccccc-ccchhccccCCEEEEEEeCCChhhHHHH
Q psy1417 91 -------------------------------------KLQIWDTAGQERFR-TITSTYYRGTHGVIVVYDVTSGETFANV 132 (188)
Q Consensus 91 -------------------------------------~l~l~D~~g~~~~~-~~~~~~~~~~~~vilv~d~~~~~s~~~~ 132 (188)
.-.+-+.+|.++.+ .+....+...|++++ ..+-+.-.+
T Consensus 111 ~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLL----DEPTNHLD~ 186 (530)
T COG0488 111 PDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLL----DEPTNHLDL 186 (530)
T ss_pred chhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEE----cCCCcccCH
Q ss_pred H--HHHHHHHhhCCCceEEE
Q psy1417 133 K--RWLHEIENNCEVVNRIL 150 (188)
Q Consensus 133 ~--~~~~~i~~~~~~~pilv 150 (188)
. .|++...+..++..|+|
T Consensus 187 ~~i~WLe~~L~~~~gtviiV 206 (530)
T COG0488 187 ESIEWLEDYLKRYPGTVIVV 206 (530)
T ss_pred HHHHHHHHHHHhCCCcEEEE
No 444
>PRK08233 hypothetical protein; Provisional
Probab=96.42 E-value=0.003 Score=46.49 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=18.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|+|.|.+|+|||||+++|..
T Consensus 5 iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578889999999999999974
No 445
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.41 E-value=0.031 Score=37.71 Aligned_cols=88 Identities=16% Similarity=0.059 Sum_probs=51.9
Q ss_pred EeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEeCCCh
Q psy1417 47 LQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSG 126 (188)
Q Consensus 47 vG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~ 126 (188)
=+..|+||||+...|...--.....++.-.+. .... ...+.+.|+++.... .....+..+|.++++.+.+ .
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~-----d~~~-~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~ 76 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDL-----DLQF-GDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-L 76 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEEC-----CCCC-CCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-h
Confidence 35679999999888853211110111111111 1111 116899999975422 2344678899999998755 5
Q ss_pred hhHHHHHHHHHHHHhhC
Q psy1417 127 ETFANVKRWLHEIENNC 143 (188)
Q Consensus 127 ~s~~~~~~~~~~i~~~~ 143 (188)
.++..+..++..+.+..
T Consensus 77 ~s~~~~~~~~~~l~~~~ 93 (106)
T cd03111 77 PSIRNAKRLLELLRVLD 93 (106)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 56777777777776643
No 446
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.41 E-value=0.0029 Score=47.10 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
+|+|+|.+|+||||+++.|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999743
No 447
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.40 E-value=0.0032 Score=42.80 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=18.4
Q ss_pred eEEEEeCCCCCHHHHHHHHH
Q psy1417 43 KSSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~ 62 (188)
-++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 57999999999999999986
No 448
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.38 E-value=0.0032 Score=47.32 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=18.3
Q ss_pred EEEEeCCCCCHHHHHHHHHh
Q psy1417 44 SSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~~ 63 (188)
|.|+|++|||||||++.|.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999964
No 449
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.36 E-value=0.0035 Score=46.73 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=20.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|++|+|||||++.+++.
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7899999999999999998754
No 450
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.35 E-value=0.01 Score=41.33 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-|++-|+=|+|||||++.+...
T Consensus 17 vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 17 VILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999854
No 451
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.35 E-value=0.0037 Score=47.41 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=19.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|.++|..|+|||||+++++.
T Consensus 24 ~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 24 VLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999999974
No 452
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.34 E-value=0.0045 Score=46.93 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|+|+|++|+|||||++.+.+
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999974
No 453
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.34 E-value=0.0043 Score=47.00 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|.|.|.+|||||||++.|..
T Consensus 8 iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 8 IIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999874
No 454
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.34 E-value=0.0032 Score=49.25 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-+.++|+.|+|||||++.+++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 468999999999999999986
No 455
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.34 E-value=0.0074 Score=48.32 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=21.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT 65 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~ 65 (188)
+++++|++|.|||+++++|....
T Consensus 63 ~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 63 NLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred ceEEecCCCCcHHHHHHHHHHHC
Confidence 88999999999999999998655
No 456
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.34 E-value=0.0035 Score=47.77 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=19.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 6799999999999999999754
No 457
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.33 E-value=0.004 Score=50.71 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=18.9
Q ss_pred EEEEeCCCCCHHHHHHHHHhC
Q psy1417 44 SSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~~~ 64 (188)
++++|++|||||||++-+.+-
T Consensus 32 ~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 589999999999999998754
No 458
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.32 E-value=0.0033 Score=46.21 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=16.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.++|.|++|+|||+|++++..
T Consensus 26 ~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 26 NLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp -EEE-B-TTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999998863
No 459
>PRK02496 adk adenylate kinase; Provisional
Probab=96.32 E-value=0.0041 Score=46.16 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~ 63 (188)
.+++|+|.+|+||||+++.+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999999874
No 460
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.32 E-value=0.003 Score=45.87 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=18.5
Q ss_pred EEEEeCCCCCHHHHHHHHHhC
Q psy1417 44 SSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~~~ 64 (188)
|+++|++|+||||+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 579999999999999998744
No 461
>PF13173 AAA_14: AAA domain
Probab=96.31 E-value=0.004 Score=43.49 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTF 66 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~ 66 (188)
-+++.|+.+||||||++++.....
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 468999999999999999985543
No 462
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.31 E-value=0.0035 Score=46.34 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-+.|+|.+|+|||||+++++..
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHH
Confidence 5789999999999999999844
No 463
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.30 E-value=0.0038 Score=46.15 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=18.4
Q ss_pred EEEEeCCCCCHHHHHHHHHh
Q psy1417 44 SSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~~ 63 (188)
|+++|.+||||||+++++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999974
No 464
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.30 E-value=0.004 Score=45.90 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=20.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
+|+++|..|+||||+.+.+...
T Consensus 6 ~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 7899999999999999999743
No 465
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.28 E-value=0.0038 Score=47.46 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
||+|+|.+||||||+..+|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 466
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.28 E-value=0.0037 Score=47.39 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.+.++|+.|+|||||++.+.+-
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5689999999999999998754
No 467
>PRK00625 shikimate kinase; Provisional
Probab=96.27 E-value=0.0043 Score=45.87 Aligned_cols=21 Identities=24% Similarity=0.206 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
+|+++|.+||||||+.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999864
No 468
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.27 E-value=0.0038 Score=47.48 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6799999999999999999754
No 469
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.27 E-value=0.0037 Score=46.64 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+-
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999988754
No 470
>KOG2485|consensus
Probab=96.26 E-value=0.0066 Score=48.59 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.5
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCC
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNT 65 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~ 65 (188)
++++.|+|-+|+|||||++.+....
T Consensus 143 ~~~vmVvGvPNVGKSsLINa~r~~~ 167 (335)
T KOG2485|consen 143 EYNVMVVGVPNVGKSSLINALRNVH 167 (335)
T ss_pred ceeEEEEcCCCCChHHHHHHHHHHH
Confidence 4589999999999999999887543
No 471
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.25 E-value=0.01 Score=47.40 Aligned_cols=60 Identities=17% Similarity=0.140 Sum_probs=39.1
Q ss_pred eEEEEEEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcCCC
Q psy1417 88 EKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGL 156 (188)
Q Consensus 88 ~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~Dl 156 (188)
..+.+.|.+|.|---.. ......+|.+++|-=..-.+..+-++.=+.++. =+++.||.|.
T Consensus 142 aG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia------Di~vINKaD~ 201 (323)
T COG1703 142 AGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIA------DIIVINKADR 201 (323)
T ss_pred cCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhh------heeeEeccCh
Confidence 44667888888632111 123445788888876666777877776555553 3667999997
No 472
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.23 E-value=0.023 Score=42.79 Aligned_cols=21 Identities=29% Similarity=0.254 Sum_probs=18.8
Q ss_pred EEEEeCCCCCHHHHHHHHHhC
Q psy1417 44 SSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~~~ 64 (188)
|+|+|++|+||||+++.++..
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988754
No 473
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.22 E-value=0.004 Score=47.27 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.+.++|+.|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988754
No 474
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.22 E-value=0.004 Score=48.06 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=19.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999754
No 475
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.21 E-value=0.004 Score=48.07 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=18.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|+++|++|+|||||++.+-+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 479999999999999999854
No 476
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.21 E-value=0.0045 Score=46.99 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=19.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999754
No 477
>PF05729 NACHT: NACHT domain
Probab=96.21 E-value=0.0044 Score=44.51 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=18.4
Q ss_pred EEEEeCCCCCHHHHHHHHHh
Q psy1417 44 SSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~~ 63 (188)
++|.|++|+|||+++.++..
T Consensus 3 l~I~G~~G~GKStll~~~~~ 22 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQ 22 (166)
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 58999999999999999974
No 478
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.20 E-value=0.0059 Score=46.11 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=19.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.+.++|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999998754
No 479
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.0043 Score=47.01 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=19.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999999854
No 480
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.20 E-value=0.0054 Score=46.76 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+.
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999998754
No 481
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.19 E-value=0.0042 Score=48.14 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988754
No 482
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.18 E-value=0.023 Score=46.48 Aligned_cols=24 Identities=8% Similarity=-0.021 Sum_probs=21.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCC
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNT 65 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~ 65 (188)
.+|+|+|.+|+|||||++.++..-
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhC
Confidence 489999999999999999998543
No 483
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.17 E-value=0.0044 Score=46.98 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 4699999999999999999754
No 484
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.17 E-value=0.042 Score=40.10 Aligned_cols=64 Identities=11% Similarity=-0.022 Sum_probs=41.9
Q ss_pred EEEEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcCCCC
Q psy1417 91 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLN 157 (188)
Q Consensus 91 ~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~Dl~ 157 (188)
.+.++|+++.... .....+..+|.++++.+.+. .++..+..++..+.........+|.|+.+..
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 6899999975332 23345678999999988664 4566666666666653322334459999863
No 485
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.17 E-value=0.0048 Score=46.84 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998754
No 486
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.16 E-value=0.005 Score=43.98 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=19.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
+|+++|.+|+||||+.+.+..
T Consensus 1 ~i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 479999999999999999974
No 487
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.16 E-value=0.0047 Score=45.66 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.+.++|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999999754
No 488
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.16 E-value=0.006 Score=46.58 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.+.++|+.|+|||||++.+.+.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999998754
No 489
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.16 E-value=0.0049 Score=46.73 Aligned_cols=22 Identities=27% Similarity=0.202 Sum_probs=19.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999754
No 490
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.16 E-value=0.0067 Score=45.48 Aligned_cols=23 Identities=30% Similarity=0.226 Sum_probs=20.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT 65 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~ 65 (188)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67999999999999999998653
No 491
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.16 E-value=0.0049 Score=47.07 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999998754
No 492
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.15 E-value=0.0066 Score=45.76 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=19.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.+.++|++|+|||||++.+.+.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999999754
No 493
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.15 E-value=0.0051 Score=47.17 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT 65 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~ 65 (188)
.+.++|+.|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 57899999999999999987553
No 494
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.14 E-value=0.0041 Score=47.44 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=17.0
Q ss_pred EEEEeCCCCCHHHHHHHHH
Q psy1417 44 SSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~ 62 (188)
.+++|++|||||||++.+-
T Consensus 36 TAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 4799999999999999873
No 495
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.14 E-value=0.0048 Score=47.43 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=17.9
Q ss_pred EEEEeCCCCCHHHHHHHHHh
Q psy1417 44 SSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~~ 63 (188)
|.|.|.+|||||||++.|.+
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 57899999999999999874
No 496
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.0079 Score=46.28 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=22.9
Q ss_pred EEEeCCCCCHHHHHHHHHhCCCCCCccceee
Q psy1417 45 SFLQLVGVGKSSLLIRFSDNTFSGSYITTIG 75 (188)
Q Consensus 45 ~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~ 75 (188)
+++|+.|+|||||.+.+.+. +.|..|.|
T Consensus 34 aiMGPNGsGKSTLa~~i~G~---p~Y~Vt~G 61 (251)
T COG0396 34 AIMGPNGSGKSTLAYTIMGH---PKYEVTEG 61 (251)
T ss_pred EEECCCCCCHHHHHHHHhCC---CCceEecc
Confidence 79999999999999999854 35666655
No 497
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.14 E-value=0.0045 Score=47.23 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999988644
No 498
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.13 E-value=0.007 Score=45.56 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=19.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999988754
No 499
>PRK13947 shikimate kinase; Provisional
Probab=96.13 E-value=0.0055 Score=44.74 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
+|+++|.+||||||+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 500
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.12 E-value=0.0055 Score=43.76 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=18.6
Q ss_pred EEEEeCCCCCHHHHHHHHHhC
Q psy1417 44 SSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~~~ 64 (188)
+++.|.+||||||+.+.+...
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 589999999999999998754
Done!