Query psy1417
Match_columns 188
No_of_seqs 122 out of 1164
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 21:13:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 2.6E-32 8.8E-37 208.0 15.4 140 42-182 14-159 (216)
2 2hup_A RAS-related protein RAB 100.0 1.4E-28 4.8E-33 184.8 15.8 155 26-182 16-176 (201)
3 3q3j_B RHO-related GTP-binding 100.0 5.6E-28 1.9E-32 183.3 16.2 140 42-182 28-185 (214)
4 2a5j_A RAS-related protein RAB 100.0 3.6E-27 1.2E-31 175.3 17.4 149 31-182 13-167 (191)
5 3tw8_B RAS-related protein RAB 100.0 4.1E-27 1.4E-31 172.5 17.2 144 36-182 6-154 (181)
6 3c5c_A RAS-like protein 12; GD 100.0 2.9E-27 9.9E-32 175.6 15.8 140 40-182 20-169 (187)
7 1gwn_A RHO-related GTP-binding 100.0 4E-27 1.4E-31 177.6 16.4 141 40-181 27-185 (205)
8 2gf9_A RAS-related protein RAB 100.0 1.2E-26 4.2E-31 172.0 18.6 144 36-182 19-168 (189)
9 1z06_A RAS-related protein RAB 99.9 6.2E-27 2.1E-31 173.6 16.2 143 37-182 18-168 (189)
10 2ew1_A RAS-related protein RAB 99.9 7.3E-27 2.5E-31 175.7 16.7 140 42-182 27-172 (201)
11 1m7b_A RND3/RHOE small GTP-bin 99.9 8.2E-27 2.8E-31 172.4 16.7 139 42-181 8-164 (184)
12 2il1_A RAB12; G-protein, GDP, 99.9 2.9E-27 1E-31 176.1 14.1 153 28-182 15-173 (192)
13 3ihw_A Centg3; RAS, centaurin, 99.9 1.3E-26 4.4E-31 171.8 17.0 135 41-182 20-163 (184)
14 3kkq_A RAS-related protein M-R 99.9 1.5E-26 5.2E-31 170.3 17.2 138 42-181 19-163 (183)
15 3reg_A RHO-like small GTPase; 99.9 1.5E-26 5.3E-31 172.2 17.4 140 42-182 24-171 (194)
16 2fu5_C RAS-related protein RAB 99.9 4.2E-27 1.4E-31 173.3 14.1 140 42-182 9-154 (183)
17 2efe_B Small GTP-binding prote 99.9 3.6E-26 1.2E-30 167.7 18.6 141 41-182 12-158 (181)
18 1z2a_A RAS-related protein RAB 99.9 1E-26 3.4E-31 168.4 15.1 140 42-182 6-150 (168)
19 1wms_A RAB-9, RAB9, RAS-relate 99.9 2.5E-26 8.6E-31 168.0 17.2 141 42-182 8-157 (177)
20 2oil_A CATX-8, RAS-related pro 99.9 2E-26 6.9E-31 171.3 16.9 144 36-182 22-171 (193)
21 3t5g_A GTP-binding protein RHE 99.9 5E-26 1.7E-30 167.2 18.8 139 42-182 7-152 (181)
22 2g6b_A RAS-related protein RAB 99.9 3.2E-26 1.1E-30 167.9 17.6 144 36-182 7-157 (180)
23 1z0j_A RAB-22, RAS-related pro 99.9 4.9E-26 1.7E-30 165.1 18.3 140 42-182 7-152 (170)
24 1z0f_A RAB14, member RAS oncog 99.9 2.8E-26 9.4E-31 167.7 17.0 140 42-182 16-161 (179)
25 2q3h_A RAS homolog gene family 99.9 1.7E-26 5.6E-31 172.8 15.9 144 36-182 17-178 (201)
26 1z08_A RAS-related protein RAB 99.9 1.9E-26 6.6E-31 167.4 15.8 140 42-182 7-152 (170)
27 1g16_A RAS-related protein SEC 99.9 2E-26 6.7E-31 167.2 15.8 140 42-182 4-148 (170)
28 1ek0_A Protein (GTP-binding pr 99.9 3.3E-26 1.1E-30 165.8 17.0 141 41-182 3-152 (170)
29 1zbd_A Rabphilin-3A; G protein 99.9 4.3E-26 1.5E-30 170.7 18.1 140 42-182 9-154 (203)
30 2bcg_Y Protein YP2, GTP-bindin 99.9 6.6E-26 2.2E-30 170.2 19.0 140 42-182 9-154 (206)
31 2atx_A Small GTP binding prote 99.9 3.2E-26 1.1E-30 170.3 17.0 140 42-182 19-176 (194)
32 3dz8_A RAS-related protein RAB 99.9 1.2E-27 4.2E-32 177.8 9.1 141 41-182 23-169 (191)
33 3tkl_A RAS-related protein RAB 99.9 6E-26 2.1E-30 168.7 18.2 142 38-182 15-162 (196)
34 1x3s_A RAS-related protein RAB 99.9 5.5E-26 1.9E-30 168.6 17.1 141 41-182 15-161 (195)
35 1r2q_A RAS-related protein RAB 99.9 8.3E-26 2.9E-30 163.7 17.3 141 41-182 6-152 (170)
36 3gj0_A GTP-binding nuclear pro 99.9 1.1E-26 3.6E-31 176.6 12.9 141 41-182 15-158 (221)
37 3oes_A GTPase rhebl1; small GT 99.9 3.6E-26 1.2E-30 171.3 15.7 139 42-182 25-170 (201)
38 2gco_A H9, RHO-related GTP-bin 99.9 1.2E-25 4.1E-30 168.5 18.4 142 40-182 24-183 (201)
39 2j0v_A RAC-like GTP-binding pr 99.9 3E-26 1E-30 172.8 15.2 140 42-182 10-163 (212)
40 1c1y_A RAS-related protein RAP 99.9 5.2E-26 1.8E-30 164.5 15.8 140 42-182 4-150 (167)
41 2fg5_A RAB-22B, RAS-related pr 99.9 6.7E-26 2.3E-30 168.7 16.8 140 42-182 24-169 (192)
42 2bme_A RAB4A, RAS-related prot 99.9 8E-26 2.7E-30 166.7 16.9 140 42-182 11-156 (186)
43 3cbq_A GTP-binding protein REM 99.9 2E-26 6.9E-31 172.3 13.6 140 42-182 24-171 (195)
44 2fv8_A H6, RHO-related GTP-bin 99.9 7.9E-26 2.7E-30 170.2 16.8 143 39-182 23-183 (207)
45 3q85_A GTP-binding protein REM 99.9 5.2E-26 1.8E-30 165.1 15.1 140 42-182 3-150 (169)
46 2p5s_A RAS and EF-hand domain 99.9 2.8E-26 9.7E-31 171.6 14.0 144 36-182 25-180 (199)
47 1vg8_A RAS-related protein RAB 99.9 7.4E-26 2.5E-30 169.7 16.3 141 42-182 9-158 (207)
48 2f7s_A C25KG, RAS-related prot 99.9 1.6E-26 5.4E-31 174.9 12.6 140 42-182 26-182 (217)
49 2y8e_A RAB-protein 6, GH09086P 99.9 1.3E-25 4.3E-30 164.2 16.7 140 42-182 15-160 (179)
50 3cph_A RAS-related protein SEC 99.9 1.5E-25 5.2E-30 168.7 17.4 139 43-182 22-165 (213)
51 3clv_A RAB5 protein, putative; 99.9 2.3E-25 8E-30 165.8 18.3 139 42-182 8-187 (208)
52 2iwr_A Centaurin gamma 1; ANK 99.9 1.2E-25 4.1E-30 164.8 16.4 135 41-182 7-152 (178)
53 2hxs_A RAB-26, RAS-related pro 99.9 1.8E-26 6.3E-31 168.9 11.9 140 42-182 7-156 (178)
54 1ky3_A GTP-binding protein YPT 99.9 5.2E-26 1.8E-30 166.7 14.2 141 42-182 9-161 (182)
55 3bc1_A RAS-related protein RAB 99.9 1.3E-25 4.6E-30 166.0 16.2 140 42-182 12-168 (195)
56 2fn4_A P23, RAS-related protei 99.9 1.9E-25 6.5E-30 163.5 16.8 138 43-182 11-155 (181)
57 1mh1_A RAC1; GTP-binding, GTPa 99.9 1.7E-25 5.9E-30 164.6 16.6 140 42-182 6-163 (186)
58 3cpj_B GTP-binding protein YPT 99.9 1.1E-25 3.8E-30 171.4 15.9 140 42-182 14-159 (223)
59 2j1l_A RHO-related GTP-binding 99.9 1E-25 3.5E-30 170.6 15.2 140 42-182 35-192 (214)
60 2o52_A RAS-related protein RAB 99.9 9.4E-26 3.2E-30 169.1 14.6 140 42-182 26-171 (200)
61 4gzl_A RAS-related C3 botulinu 99.9 1.6E-25 5.6E-30 168.3 15.4 140 42-182 31-188 (204)
62 3bwd_D RAC-like GTP-binding pr 99.9 1.9E-26 6.4E-31 169.4 9.8 139 43-182 10-164 (182)
63 3t1o_A Gliding protein MGLA; G 99.9 3.6E-26 1.2E-30 169.7 11.0 141 41-182 14-175 (198)
64 1u8z_A RAS-related protein RAL 99.9 2.7E-25 9.3E-30 160.5 14.5 139 42-182 5-150 (168)
65 3l0i_B RAS-related protein RAB 99.9 1.2E-26 4.1E-31 173.6 7.5 144 36-182 30-179 (199)
66 1kao_A RAP2A; GTP-binding prot 99.9 4.7E-25 1.6E-29 159.1 15.6 139 42-182 4-149 (167)
67 2yc2_C IFT27, small RAB-relate 99.9 6E-26 2.1E-30 170.0 11.2 141 41-182 20-174 (208)
68 2a9k_A RAS-related protein RAL 99.9 3.4E-25 1.2E-29 163.0 15.0 139 42-182 19-164 (187)
69 2bov_A RAla, RAS-related prote 99.9 6.4E-25 2.2E-29 164.3 16.5 139 42-182 15-160 (206)
70 3q72_A GTP-binding protein RAD 99.9 6.1E-25 2.1E-29 159.0 15.7 138 42-182 3-147 (166)
71 2nzj_A GTP-binding protein REM 99.9 7.9E-25 2.7E-29 159.5 15.6 139 42-182 5-152 (175)
72 4dsu_A GTPase KRAS, isoform 2B 99.9 1.6E-24 5.5E-29 159.8 17.0 139 42-182 5-149 (189)
73 3con_A GTPase NRAS; structural 99.9 1.4E-24 4.8E-29 160.8 16.7 139 42-182 22-166 (190)
74 2ce2_X GTPase HRAS; signaling 99.9 1.5E-24 5E-29 156.2 16.4 139 42-182 4-148 (166)
75 4bas_A ADP-ribosylation factor 99.9 1.1E-24 3.7E-29 162.2 15.4 112 42-157 18-140 (199)
76 2erx_A GTP-binding protein DI- 99.9 7.8E-25 2.7E-29 158.9 13.6 139 42-182 4-150 (172)
77 1zd9_A ADP-ribosylation factor 99.9 1.1E-24 3.8E-29 161.5 14.6 113 42-158 23-138 (188)
78 2atv_A RERG, RAS-like estrogen 99.9 9.4E-25 3.2E-29 162.8 14.3 138 42-182 29-173 (196)
79 2zej_A Dardarin, leucine-rich 99.9 1.3E-25 4.3E-30 166.2 9.4 141 42-182 3-160 (184)
80 2g3y_A GTP-binding protein GEM 99.9 1.8E-24 6.2E-29 164.0 15.1 139 42-182 38-186 (211)
81 2h17_A ADP-ribosylation factor 99.9 1E-24 3.6E-29 160.6 13.3 117 35-158 17-136 (181)
82 1m2o_B GTP-binding protein SAR 99.9 6.7E-24 2.3E-28 157.8 17.7 111 43-158 25-138 (190)
83 2h57_A ADP-ribosylation factor 99.9 3.2E-24 1.1E-28 159.1 15.5 115 37-157 19-139 (190)
84 2gf0_A GTP-binding protein DI- 99.9 2.7E-24 9.4E-29 160.0 14.4 138 43-182 10-154 (199)
85 1ksh_A ARF-like protein 2; sma 99.9 1E-23 3.5E-28 155.6 16.3 110 43-157 20-132 (186)
86 1f6b_A SAR1; gtpases, N-termin 99.9 4.1E-24 1.4E-28 160.0 14.2 111 43-158 27-140 (198)
87 1r8s_A ADP-ribosylation factor 99.9 8.2E-24 2.8E-28 152.7 14.4 112 42-158 1-115 (164)
88 1zj6_A ADP-ribosylation factor 99.9 5.1E-24 1.7E-28 157.6 13.5 111 43-158 18-131 (187)
89 4djt_A GTP-binding nuclear pro 99.9 3E-24 1E-28 162.5 12.5 141 41-182 11-158 (218)
90 1upt_A ARL1, ADP-ribosylation 99.9 3E-23 1E-27 150.6 15.7 110 43-157 9-121 (171)
91 2cjw_A GTP-binding protein GEM 99.9 3.4E-23 1.2E-27 154.4 16.1 139 42-182 7-155 (192)
92 3llu_A RAS-related GTP-binding 99.9 6.2E-24 2.1E-28 158.6 12.0 120 32-156 13-141 (196)
93 2b6h_A ADP-ribosylation factor 99.9 1.7E-23 5.7E-28 155.9 14.3 111 43-158 31-144 (192)
94 2wkq_A NPH1-1, RAS-related C3 99.9 4.2E-23 1.4E-27 165.1 16.9 140 42-182 156-313 (332)
95 1fzq_A ADP-ribosylation factor 99.9 2.4E-23 8E-28 153.6 13.9 110 43-157 18-130 (181)
96 2f9l_A RAB11B, member RAS onco 99.9 1.6E-22 5.5E-27 151.2 17.3 140 42-182 6-151 (199)
97 1moz_A ARL1, ADP-ribosylation 99.9 2.4E-23 8.3E-28 152.9 12.3 111 43-158 20-133 (183)
98 1oix_A RAS-related protein RAB 99.9 2E-22 6.9E-27 150.0 17.1 140 42-182 30-175 (191)
99 3th5_A RAS-related C3 botulinu 99.8 1.8E-25 6E-30 167.8 0.0 118 37-157 28-147 (204)
100 2x77_A ADP-ribosylation factor 99.9 7.5E-23 2.6E-27 151.4 13.1 110 43-157 24-136 (189)
101 3c5h_A Glucocorticoid receptor 99.9 6E-24 2.1E-28 165.4 6.7 150 31-182 11-238 (255)
102 3r7w_B Gtpase2, GTP-binding pr 99.9 2.1E-23 7.1E-28 166.8 8.5 110 43-157 1-119 (331)
103 3r7w_A Gtpase1, GTP-binding pr 99.9 9.4E-23 3.2E-27 162.7 12.2 138 42-182 4-165 (307)
104 2fh5_B SR-beta, signal recogni 99.9 6E-22 2.1E-26 149.4 12.8 112 43-157 9-128 (214)
105 3o47_A ADP-ribosylation factor 99.9 4.8E-22 1.6E-26 160.0 11.8 112 42-158 166-280 (329)
106 2lkc_A Translation initiation 99.9 3.2E-21 1.1E-25 140.8 14.0 108 43-158 10-121 (178)
107 3lvq_E ARF-GAP with SH3 domain 99.9 6E-21 2.1E-25 161.2 15.8 112 42-158 323-437 (497)
108 2wji_A Ferrous iron transport 99.8 1.8E-20 6.3E-25 136.0 13.2 133 42-182 4-148 (165)
109 2dyk_A GTP-binding protein; GT 99.8 1.4E-20 4.8E-25 135.1 12.3 135 42-182 2-145 (161)
110 1nrj_B SR-beta, signal recogni 99.8 7.8E-22 2.7E-26 149.1 4.1 109 43-160 14-137 (218)
111 2qu8_A Putative nucleolar GTP- 99.8 1.7E-20 6E-25 143.1 11.1 142 37-182 27-188 (228)
112 2ged_A SR-beta, signal recogni 99.8 8.3E-21 2.8E-25 140.7 8.0 111 43-162 50-175 (193)
113 3dpu_A RAB family protein; roc 99.8 3.3E-21 1.1E-25 164.3 6.2 137 42-182 42-191 (535)
114 1svi_A GTP-binding protein YSX 99.8 5.8E-20 2E-24 136.2 11.0 134 43-182 25-178 (195)
115 2wjg_A FEOB, ferrous iron tran 99.8 1.1E-19 3.6E-24 134.1 11.2 133 42-182 8-152 (188)
116 2gj8_A MNME, tRNA modification 99.8 8.3E-20 2.8E-24 133.6 9.6 112 42-156 5-127 (172)
117 2cxx_A Probable GTP-binding pr 99.8 1.8E-20 6.1E-25 138.2 4.8 135 42-182 2-167 (190)
118 3pqc_A Probable GTP-binding pr 99.8 1.6E-18 5.6E-23 128.0 12.3 131 43-182 25-177 (195)
119 3a1s_A Iron(II) transport prot 99.8 1.7E-18 5.8E-23 134.9 12.1 133 42-182 6-150 (258)
120 3iby_A Ferrous iron transport 99.8 8.6E-19 2.9E-23 136.4 9.4 132 43-182 3-150 (256)
121 3i8s_A Ferrous iron transport 99.8 2.7E-18 9.2E-23 134.8 9.8 132 42-181 4-151 (274)
122 3b1v_A Ferrous iron uptake tra 99.7 3.4E-18 1.2E-22 134.1 9.2 132 42-182 4-147 (272)
123 1wf3_A GTP-binding protein; GT 99.7 3.8E-17 1.3E-21 129.9 14.7 112 42-157 8-130 (301)
124 3gee_A MNME, tRNA modification 99.7 7E-18 2.4E-22 141.7 10.6 137 42-182 234-381 (476)
125 3iev_A GTP-binding protein ERA 99.7 3.1E-17 1.1E-21 130.8 13.7 137 43-182 12-165 (308)
126 3k53_A Ferrous iron transport 99.7 2.3E-17 7.8E-22 129.1 11.2 133 42-181 4-148 (271)
127 4dhe_A Probable GTP-binding pr 99.7 3.3E-18 1.1E-22 129.4 6.0 112 43-157 31-157 (223)
128 3def_A T7I23.11 protein; chlor 99.7 9.9E-17 3.4E-21 125.0 13.0 111 42-156 37-163 (262)
129 1mky_A Probable GTP-binding pr 99.7 4.8E-17 1.6E-21 135.5 10.9 132 43-182 3-149 (439)
130 2hjg_A GTP-binding protein ENG 99.7 2.8E-17 9.6E-22 136.8 9.2 116 38-160 174-303 (436)
131 3lxx_A GTPase IMAP family memb 99.7 1.2E-16 4.2E-21 122.6 11.8 116 43-161 31-163 (239)
132 3qq5_A Small GTP-binding prote 99.7 2.5E-17 8.7E-22 136.3 6.8 133 43-182 36-179 (423)
133 2xtp_A GTPase IMAP family memb 99.7 5.6E-16 1.9E-20 120.2 13.8 115 43-159 24-154 (260)
134 2hjg_A GTP-binding protein ENG 99.7 3.7E-17 1.3E-21 136.1 7.2 135 43-182 5-148 (436)
135 2e87_A Hypothetical protein PH 99.7 4E-16 1.4E-20 126.7 13.1 134 43-181 169-318 (357)
136 3lxw_A GTPase IMAP family memb 99.7 1.2E-16 4.2E-21 123.5 9.2 116 42-159 22-154 (247)
137 1h65_A Chloroplast outer envel 99.7 1.4E-16 4.9E-21 124.5 9.2 110 43-156 41-166 (270)
138 1lnz_A SPO0B-associated GTP-bi 99.7 1.3E-16 4.4E-21 128.9 8.9 137 43-182 160-313 (342)
139 3cb4_D GTP-binding protein LEP 99.7 4.3E-16 1.5E-20 133.9 11.6 137 43-182 6-165 (599)
140 4fid_A G protein alpha subunit 99.7 1.8E-16 6E-21 127.6 8.0 69 89-157 160-241 (340)
141 4dcu_A GTP-binding protein ENG 99.7 2.6E-16 8.8E-21 131.7 9.4 138 38-182 194-352 (456)
142 3geh_A MNME, tRNA modification 99.6 3E-16 1E-20 131.3 9.1 109 42-157 225-343 (462)
143 2ywe_A GTP-binding protein LEP 99.6 1.6E-15 5.3E-20 130.3 13.3 137 43-182 8-167 (600)
144 1xzp_A Probable tRNA modificat 99.6 3.8E-16 1.3E-20 131.3 8.7 133 42-182 244-388 (482)
145 3j2k_7 ERF3, eukaryotic polype 99.6 4.1E-15 1.4E-19 123.9 13.6 114 42-157 18-168 (439)
146 3p26_A Elongation factor 1 alp 99.6 6.1E-16 2.1E-20 130.3 8.4 114 42-157 34-184 (483)
147 4dcu_A GTP-binding protein ENG 99.6 2.4E-16 8.1E-21 131.9 5.7 111 43-157 25-144 (456)
148 3t5d_A Septin-7; GTP-binding p 99.6 9.7E-16 3.3E-20 120.1 8.3 113 41-156 8-156 (274)
149 2qag_A Septin-2, protein NEDD5 99.6 4.3E-16 1.5E-20 126.7 6.3 119 41-162 37-193 (361)
150 3izy_P Translation initiation 99.6 3.2E-17 1.1E-21 139.1 -0.5 111 43-157 6-117 (537)
151 1jny_A EF-1-alpha, elongation 99.6 4.8E-16 1.6E-20 129.4 6.5 114 42-158 7-158 (435)
152 1s0u_A EIF-2-gamma, translatio 99.6 1.2E-14 4.2E-19 119.9 14.6 110 42-156 9-147 (408)
153 3sjy_A Translation initiation 99.6 1.2E-14 4E-19 119.8 13.9 115 42-157 9-142 (403)
154 1ega_A Protein (GTP-binding pr 99.6 1.2E-14 4.2E-19 115.4 12.9 133 43-181 10-157 (301)
155 3ohm_A Guanine nucleotide-bind 99.6 1.3E-14 4.6E-19 116.2 12.4 74 81-156 160-246 (327)
156 2qtf_A Protein HFLX, GTP-bindi 99.6 1.3E-14 4.4E-19 118.1 11.8 112 43-157 181-305 (364)
157 3tr5_A RF-3, peptide chain rel 99.6 3.3E-15 1.1E-19 126.9 8.4 111 43-158 15-148 (528)
158 1wb1_A Translation elongation 99.6 4.5E-15 1.5E-19 125.0 9.1 108 42-157 20-138 (482)
159 1r5b_A Eukaryotic peptide chai 99.6 3.1E-15 1.1E-19 125.5 6.7 112 42-157 44-194 (467)
160 2c78_A Elongation factor TU-A; 99.6 3.7E-15 1.2E-19 122.9 6.8 113 42-157 12-141 (405)
161 1kk1_A EIF2gamma; initiation o 99.6 3.4E-14 1.2E-18 117.3 12.6 111 42-157 11-150 (410)
162 1n0u_A EF-2, elongation factor 99.6 9.2E-15 3.1E-19 130.3 9.7 111 43-156 21-162 (842)
163 1zo1_I IF2, translation initia 99.6 1.3E-15 4.5E-20 128.3 3.8 107 43-157 6-116 (501)
164 1d2e_A Elongation factor TU (E 99.6 7.8E-15 2.7E-19 120.7 8.3 113 42-157 4-132 (397)
165 1g7s_A Translation initiation 99.6 7.7E-15 2.6E-19 126.1 8.5 109 43-157 7-135 (594)
166 1zun_B Sulfate adenylate trans 99.5 2.6E-14 9E-19 118.8 10.7 112 42-157 25-170 (434)
167 1mky_A Probable GTP-binding pr 99.5 6.1E-14 2.1E-18 116.7 12.3 109 43-156 182-304 (439)
168 1dar_A EF-G, elongation factor 99.5 2.8E-14 9.6E-19 124.8 10.4 110 43-159 14-144 (691)
169 2h5e_A Peptide chain release f 99.5 2.2E-14 7.4E-19 122.0 8.1 111 43-158 15-148 (529)
170 2aka_B Dynamin-1; fusion prote 99.5 2.5E-14 8.6E-19 112.8 8.0 112 43-156 28-204 (299)
171 3izq_1 HBS1P, elongation facto 99.5 5.1E-14 1.8E-18 121.5 10.1 114 42-157 168-318 (611)
172 2rdo_7 EF-G, elongation factor 99.5 1.4E-13 4.8E-18 120.5 13.0 115 37-158 8-148 (704)
173 1f60_A Elongation factor EEF1A 99.5 1.5E-14 5.1E-19 121.1 5.9 110 42-157 8-158 (458)
174 2xex_A Elongation factor G; GT 99.5 1.2E-13 4.1E-18 120.9 11.8 113 37-158 8-141 (693)
175 1pui_A ENGB, probable GTP-bind 99.5 2.7E-14 9.2E-19 106.8 5.4 106 43-156 28-149 (210)
176 2elf_A Protein translation elo 99.5 4.3E-14 1.5E-18 115.2 6.9 100 43-156 23-125 (370)
177 1jwy_B Dynamin A GTPase domain 99.5 2.7E-13 9.1E-18 107.7 9.7 65 90-156 131-210 (315)
178 3avx_A Elongation factor TS, e 99.5 8E-14 2.7E-18 126.1 7.2 114 41-157 296-425 (1289)
179 2qpt_A EH domain-containing pr 99.4 1.1E-13 3.7E-18 118.2 6.5 112 38-156 64-230 (550)
180 2dy1_A Elongation factor G; tr 99.4 2.4E-13 8.1E-18 118.5 8.4 112 43-157 11-139 (665)
181 1u0l_A Probable GTPase ENGC; p 99.4 1.8E-14 6.1E-19 114.4 1.2 119 56-182 32-156 (301)
182 3t34_A Dynamin-related protein 99.4 4.8E-13 1.6E-17 108.6 9.6 112 43-156 36-215 (360)
183 3mca_A HBS1, elongation factor 99.4 1.8E-14 6.1E-19 124.0 1.2 108 42-157 178-328 (592)
184 1azs_C GS-alpha; complex (lyas 99.4 1E-12 3.4E-17 107.9 10.4 74 81-156 210-296 (402)
185 2j69_A Bacterial dynamin-like 99.4 4.5E-13 1.5E-17 117.3 8.2 64 91-156 175-242 (695)
186 1wxq_A GTP-binding protein; st 99.4 1.3E-12 4.6E-17 107.3 9.8 85 42-126 1-114 (397)
187 2qnr_A Septin-2, protein NEDD5 99.4 1.5E-13 5.1E-18 109.2 3.5 137 40-180 17-196 (301)
188 1cip_A Protein (guanine nucleo 99.4 1E-12 3.4E-17 106.5 8.3 81 72-156 179-272 (353)
189 2xtz_A Guanine nucleotide-bind 99.4 1.2E-12 4.2E-17 106.0 8.0 69 88-156 181-262 (354)
190 1zcb_A G alpha I/13; GTP-bindi 99.3 3.3E-12 1.1E-16 103.8 8.2 82 72-157 187-281 (362)
191 2qag_C Septin-7; cell cycle, c 99.3 5E-12 1.7E-16 104.5 9.1 121 39-162 29-186 (418)
192 3vqt_A RF-3, peptide chain rel 99.3 1.3E-11 4.5E-16 105.3 11.5 113 43-160 33-168 (548)
193 2x2e_A Dynamin-1; nitration, h 99.3 3.3E-12 1.1E-16 103.5 5.5 25 43-67 33-57 (353)
194 1udx_A The GTP-binding protein 99.2 2.4E-11 8.2E-16 100.3 9.3 113 43-159 159-284 (416)
195 1jal_A YCHF protein; nucleotid 99.2 4E-11 1.4E-15 97.2 7.7 82 42-125 3-108 (363)
196 4fn5_A EF-G 1, elongation fact 99.2 1.2E-10 4E-15 102.3 10.8 117 37-158 11-151 (709)
197 2ohf_A Protein OLA1, GTP-bindi 99.1 3.5E-11 1.2E-15 98.5 5.4 87 43-129 24-132 (396)
198 4a9a_A Ribosome-interacting GT 99.1 1.7E-10 5.7E-15 94.0 7.7 112 43-156 74-194 (376)
199 3j25_A Tetracycline resistance 99.1 3.3E-11 1.1E-15 104.6 1.8 115 43-160 4-135 (638)
200 2hf9_A Probable hydrogenase ni 99.0 1.7E-12 5.7E-17 98.2 -7.7 36 43-78 40-75 (226)
201 2wsm_A Hydrogenase expression/ 98.9 6.4E-10 2.2E-14 83.6 5.0 104 43-156 32-166 (221)
202 2dby_A GTP-binding protein; GD 98.9 3.4E-09 1.2E-13 86.1 8.5 82 42-125 2-111 (368)
203 3zvr_A Dynamin-1; hydrolase, D 98.8 2.3E-08 7.7E-13 87.9 10.5 24 43-66 53-76 (772)
204 3p32_A Probable GTPase RV1496/ 98.8 8.8E-10 3E-14 89.3 1.4 58 90-157 172-230 (355)
205 2www_A Methylmalonic aciduria 98.7 1.1E-08 3.9E-13 82.5 4.4 58 90-157 167-225 (349)
206 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 5E-08 1.7E-12 79.8 7.5 83 43-125 22-127 (392)
207 1yrb_A ATP(GTP)binding protein 98.6 2.9E-08 1E-12 76.4 5.1 66 90-157 109-184 (262)
208 2p67_A LAO/AO transport system 98.6 9.8E-09 3.4E-13 82.6 1.7 58 90-157 149-207 (341)
209 2yv5_A YJEQ protein; hydrolase 98.5 3E-07 1E-11 72.8 7.3 80 100-182 66-152 (302)
210 3sop_A Neuronal-specific septi 98.4 6.9E-07 2.4E-11 69.6 7.7 25 41-65 2-26 (270)
211 2qm8_A GTPase/ATPase; G protei 98.3 4.2E-08 1.4E-12 78.9 -0.8 57 90-156 148-205 (337)
212 3l82_B F-box only protein 4; T 98.3 2.4E-07 8.1E-12 69.4 3.1 74 97-172 109-190 (227)
213 3cnl_A YLQF, putative uncharac 98.3 4.5E-07 1.6E-11 70.3 3.3 56 43-102 101-156 (262)
214 2qag_B Septin-6, protein NEDD5 98.2 5.8E-06 2E-10 68.2 9.6 23 43-65 44-66 (427)
215 3h2y_A GTPase family protein; 98.2 4.3E-07 1.5E-11 73.8 2.4 108 43-156 162-285 (368)
216 3ec1_A YQEH GTPase; atnos1, at 98.2 5E-07 1.7E-11 73.5 2.3 107 43-156 164-286 (369)
217 1puj_A YLQF, conserved hypothe 98.2 1.6E-06 5.6E-11 67.9 5.1 55 43-101 122-176 (282)
218 3l2o_B F-box only protein 4; s 98.1 1.3E-06 4.6E-11 68.4 3.5 74 97-172 194-275 (312)
219 2j37_W Signal recognition part 98.1 1.3E-06 4.5E-11 73.6 3.2 109 43-157 103-253 (504)
220 1bif_A 6-phosphofructo-2-kinas 97.9 3E-07 1E-11 77.0 -3.7 99 43-143 41-149 (469)
221 2v3c_C SRP54, signal recogniti 97.7 7.6E-05 2.6E-09 61.8 7.2 21 43-63 101-121 (432)
222 1f5n_A Interferon-induced guan 97.7 4.1E-05 1.4E-09 65.7 5.5 61 38-102 37-103 (592)
223 3dm5_A SRP54, signal recogniti 97.6 0.00013 4.6E-09 60.4 7.8 82 90-175 183-270 (443)
224 3h2y_A GTPase family protein; 97.5 4.6E-05 1.6E-09 61.8 3.6 54 99-157 55-109 (368)
225 1tq4_A IIGP1, interferon-induc 97.4 0.00034 1.2E-08 57.6 7.6 106 43-156 71-187 (413)
226 1j8m_F SRP54, signal recogniti 97.3 0.00068 2.3E-08 53.3 7.5 84 89-176 180-271 (297)
227 3ec1_A YQEH GTPase; atnos1, at 97.2 0.00015 5.3E-09 58.7 2.7 54 99-157 57-111 (369)
228 3ney_A 55 kDa erythrocyte memb 97.2 0.00031 1E-08 52.0 4.0 22 43-64 21-42 (197)
229 1ye8_A Protein THEP1, hypothet 97.1 0.00026 9E-09 51.4 3.3 22 43-64 2-23 (178)
230 3szr_A Interferon-induced GTP- 97.1 0.00055 1.9E-08 59.0 5.6 23 43-65 47-69 (608)
231 1kgd_A CASK, peripheral plasma 97.1 0.00029 9.8E-09 51.0 3.1 22 43-64 7-28 (180)
232 3kl4_A SRP54, signal recogniti 97.1 0.00013 4.3E-09 60.4 1.2 67 89-159 179-253 (433)
233 1lvg_A Guanylate kinase, GMP k 97.0 0.00037 1.3E-08 51.3 3.1 21 43-63 6-26 (198)
234 3q5d_A Atlastin-1; G protein, 97.0 0.00096 3.3E-08 55.4 5.5 21 43-63 69-89 (447)
235 1zp6_A Hypothetical protein AT 96.9 0.00056 1.9E-08 49.5 3.3 22 43-64 11-32 (191)
236 3a00_A Guanylate kinase, GMP k 96.9 0.00054 1.8E-08 49.8 3.1 21 44-64 4-24 (186)
237 3tr0_A Guanylate kinase, GMP k 96.9 0.00057 1.9E-08 50.0 3.2 22 43-64 9-30 (205)
238 1ex7_A Guanylate kinase; subst 96.9 0.0006 2.1E-08 50.0 3.1 21 44-64 4-24 (186)
239 1s96_A Guanylate kinase, GMP k 96.9 0.00063 2.1E-08 51.1 3.2 22 43-64 18-39 (219)
240 1znw_A Guanylate kinase, GMP k 96.8 0.00064 2.2E-08 50.3 3.2 22 43-64 22-43 (207)
241 1z6g_A Guanylate kinase; struc 96.8 0.00071 2.4E-08 50.6 3.2 22 43-64 25-46 (218)
242 3tau_A Guanylate kinase, GMP k 96.8 0.00075 2.6E-08 50.0 3.2 22 43-64 10-31 (208)
243 4gp7_A Metallophosphoesterase; 96.8 0.00058 2E-08 49.0 2.4 20 43-62 11-30 (171)
244 1htw_A HI0065; nucleotide-bind 96.7 0.001 3.4E-08 47.4 3.2 23 43-65 35-57 (158)
245 2qor_A Guanylate kinase; phosp 96.7 0.00098 3.3E-08 49.1 3.2 21 43-63 14-34 (204)
246 3c8u_A Fructokinase; YP_612366 96.7 0.00096 3.3E-08 49.3 3.0 21 43-63 24-44 (208)
247 3kb2_A SPBC2 prophage-derived 96.7 0.0011 3.8E-08 46.9 3.1 21 43-63 3-23 (173)
248 2bdt_A BH3686; alpha-beta prot 96.6 0.0012 4E-08 47.9 3.2 21 43-63 4-24 (189)
249 1kag_A SKI, shikimate kinase I 96.6 0.0012 4.2E-08 46.9 3.2 21 43-63 6-26 (173)
250 2j41_A Guanylate kinase; GMP, 96.6 0.0012 4.1E-08 48.3 3.2 22 43-64 8-29 (207)
251 1ly1_A Polynucleotide kinase; 96.6 0.0012 4.1E-08 47.1 3.1 21 43-63 4-24 (181)
252 3lw7_A Adenylate kinase relate 96.6 0.0012 4E-08 46.7 3.0 19 43-61 3-21 (179)
253 3tif_A Uncharacterized ABC tra 96.6 0.0011 3.7E-08 50.3 2.8 22 43-64 33-54 (235)
254 2pcj_A ABC transporter, lipopr 96.6 0.0012 4.3E-08 49.6 2.9 22 43-64 32-53 (224)
255 4eun_A Thermoresistant glucoki 96.6 0.0014 4.8E-08 48.0 3.2 21 43-63 31-51 (200)
256 2bbw_A Adenylate kinase 4, AK4 96.6 0.0014 4.8E-08 49.7 3.2 20 43-62 29-48 (246)
257 2i3b_A HCR-ntpase, human cance 96.5 0.0015 5.2E-08 47.8 3.1 21 43-63 3-23 (189)
258 3vaa_A Shikimate kinase, SK; s 96.5 0.0017 5.7E-08 47.6 3.4 21 43-63 27-47 (199)
259 3t61_A Gluconokinase; PSI-biol 96.5 0.0016 5.4E-08 47.7 3.2 21 43-63 20-40 (202)
260 1nks_A Adenylate kinase; therm 96.5 0.0018 6.1E-08 46.6 3.5 21 43-63 3-23 (194)
261 2onk_A Molybdate/tungstate ABC 96.5 0.0015 5.3E-08 49.6 3.1 22 43-64 26-47 (240)
262 3asz_A Uridine kinase; cytidin 96.5 0.0017 5.8E-08 47.8 3.3 21 43-63 8-28 (211)
263 1qhx_A CPT, protein (chloramph 96.5 0.0017 5.7E-08 46.4 3.1 21 43-63 5-25 (178)
264 2jaq_A Deoxyguanosine kinase; 96.5 0.0018 6.3E-08 47.1 3.4 21 43-63 2-22 (205)
265 1y63_A LMAJ004144AAA protein; 96.4 0.0027 9.4E-08 45.9 4.1 22 43-64 12-33 (184)
266 1b0u_A Histidine permease; ABC 96.4 0.0016 5.3E-08 50.3 2.8 22 43-64 34-55 (262)
267 2cbz_A Multidrug resistance-as 96.4 0.0016 5.5E-08 49.4 2.8 22 43-64 33-54 (237)
268 1knq_A Gluconate kinase; ALFA/ 96.4 0.002 6.9E-08 45.9 3.2 21 43-63 10-30 (175)
269 2eyu_A Twitching motility prot 96.4 0.0019 6.5E-08 49.8 3.2 21 43-63 27-47 (261)
270 1sgw_A Putative ABC transporte 96.4 0.0017 5.7E-08 48.6 2.8 22 43-64 37-58 (214)
271 2if2_A Dephospho-COA kinase; a 96.4 0.0022 7.5E-08 46.9 3.4 21 43-63 3-23 (204)
272 3uie_A Adenylyl-sulfate kinase 96.4 0.002 6.8E-08 47.2 3.2 21 43-63 27-47 (200)
273 3gfo_A Cobalt import ATP-bindi 96.4 0.0016 5.6E-08 50.5 2.8 22 43-64 36-57 (275)
274 3fb4_A Adenylate kinase; psych 96.4 0.0021 7.3E-08 47.4 3.3 21 43-63 2-22 (216)
275 1g6h_A High-affinity branched- 96.4 0.0017 5.9E-08 49.8 2.8 22 43-64 35-56 (257)
276 3trf_A Shikimate kinase, SK; a 96.4 0.0023 7.8E-08 46.0 3.3 21 43-63 7-27 (185)
277 1np6_A Molybdopterin-guanine d 96.4 0.0022 7.5E-08 46.4 3.2 22 43-64 8-29 (174)
278 2rhm_A Putative kinase; P-loop 96.4 0.003 1E-07 45.6 4.0 21 43-63 7-27 (193)
279 2d2e_A SUFC protein; ABC-ATPas 96.4 0.002 6.9E-08 49.2 3.1 22 43-64 31-52 (250)
280 2ff7_A Alpha-hemolysin translo 96.4 0.0018 6.1E-08 49.5 2.8 22 43-64 37-58 (247)
281 1kht_A Adenylate kinase; phosp 96.4 0.0022 7.5E-08 46.2 3.2 21 43-63 5-25 (192)
282 4a74_A DNA repair and recombin 96.4 0.0022 7.5E-08 47.6 3.3 21 43-63 27-47 (231)
283 2ehv_A Hypothetical protein PH 96.4 0.002 6.9E-08 48.4 3.1 20 43-62 32-51 (251)
284 1ji0_A ABC transporter; ATP bi 96.4 0.0018 6.2E-08 49.2 2.8 22 43-64 34-55 (240)
285 3dl0_A Adenylate kinase; phosp 96.4 0.0023 7.9E-08 47.3 3.3 21 43-63 2-22 (216)
286 2pze_A Cystic fibrosis transme 96.4 0.0018 6.3E-08 48.8 2.8 22 43-64 36-57 (229)
287 4g1u_C Hemin import ATP-bindin 96.4 0.0018 6.1E-08 50.1 2.7 22 43-64 39-60 (266)
288 1mv5_A LMRA, multidrug resista 96.3 0.002 6.8E-08 49.0 3.0 22 43-64 30-51 (243)
289 3ec2_A DNA replication protein 96.3 0.0017 6E-08 46.6 2.5 21 43-63 40-60 (180)
290 2zu0_C Probable ATP-dependent 96.3 0.0021 7.2E-08 49.6 3.1 22 43-64 48-69 (267)
291 2olj_A Amino acid ABC transpor 96.3 0.0019 6.4E-08 49.9 2.8 22 43-64 52-73 (263)
292 2rcn_A Probable GTPase ENGC; Y 96.3 0.002 6.7E-08 52.0 3.0 23 43-65 217-239 (358)
293 2qi9_C Vitamin B12 import ATP- 96.3 0.002 6.7E-08 49.3 2.8 22 43-64 28-49 (249)
294 2cdn_A Adenylate kinase; phosp 96.3 0.0035 1.2E-07 45.8 4.0 21 43-63 22-42 (201)
295 3b85_A Phosphate starvation-in 96.3 0.0017 5.9E-08 48.3 2.3 22 43-64 24-45 (208)
296 1via_A Shikimate kinase; struc 96.3 0.0026 8.9E-08 45.4 3.2 21 43-63 6-26 (175)
297 1cke_A CK, MSSA, protein (cyti 96.3 0.0026 9E-08 47.2 3.3 21 43-63 7-27 (227)
298 2ghi_A Transport protein; mult 96.3 0.0021 7.2E-08 49.5 2.8 22 43-64 48-69 (260)
299 1vpl_A ABC transporter, ATP-bi 96.3 0.0021 7.1E-08 49.4 2.8 22 43-64 43-64 (256)
300 2ixe_A Antigen peptide transpo 96.3 0.0021 7.2E-08 49.8 2.8 22 43-64 47-68 (271)
301 3iij_A Coilin-interacting nucl 96.3 0.0039 1.3E-07 44.6 4.1 21 43-63 13-33 (180)
302 3cm0_A Adenylate kinase; ATP-b 96.3 0.0028 9.6E-08 45.5 3.4 21 43-63 6-26 (186)
303 2v9p_A Replication protein E1; 96.3 0.0025 8.6E-08 50.3 3.3 21 43-63 128-148 (305)
304 1ukz_A Uridylate kinase; trans 96.3 0.0041 1.4E-07 45.4 4.3 21 43-63 17-37 (203)
305 2f6r_A COA synthase, bifunctio 96.3 0.0057 1.9E-07 47.5 5.3 25 36-62 72-96 (281)
306 2wwf_A Thymidilate kinase, put 96.3 0.0045 1.5E-07 45.4 4.4 21 43-63 12-32 (212)
307 2ihy_A ABC transporter, ATP-bi 96.2 0.0022 7.6E-08 49.9 2.8 22 43-64 49-70 (279)
308 3be4_A Adenylate kinase; malar 96.2 0.0029 1E-07 47.0 3.4 21 43-63 7-27 (217)
309 1e4v_A Adenylate kinase; trans 96.2 0.0031 1E-07 46.7 3.4 21 43-63 2-22 (214)
310 3lnc_A Guanylate kinase, GMP k 96.2 0.0016 5.4E-08 48.8 1.9 20 43-62 29-48 (231)
311 2yz2_A Putative ABC transporte 96.2 0.0024 8.2E-08 49.3 2.8 22 43-64 35-56 (266)
312 2f1r_A Molybdopterin-guanine d 96.2 0.0014 4.8E-08 47.3 1.4 22 43-64 4-25 (171)
313 3sr0_A Adenylate kinase; phosp 96.2 0.0031 1.1E-07 46.8 3.3 21 43-63 2-22 (206)
314 1lw7_A Transcriptional regulat 96.2 0.0021 7.3E-08 51.7 2.6 23 42-64 171-193 (365)
315 2nq2_C Hypothetical ABC transp 96.2 0.0024 8.2E-08 48.9 2.7 22 43-64 33-54 (253)
316 3aez_A Pantothenate kinase; tr 96.2 0.0028 9.6E-08 50.1 3.2 21 43-63 92-112 (312)
317 1zak_A Adenylate kinase; ATP:A 96.2 0.0039 1.3E-07 46.3 3.7 21 43-63 7-27 (222)
318 2yv5_A YJEQ protein; hydrolase 96.1 0.003 1E-07 49.6 3.1 20 43-62 167-186 (302)
319 2plr_A DTMP kinase, probable t 96.1 0.0038 1.3E-07 45.7 3.5 21 43-63 6-26 (213)
320 1jjv_A Dephospho-COA kinase; P 96.1 0.0039 1.3E-07 45.7 3.5 21 43-63 4-24 (206)
321 1zd8_A GTP:AMP phosphotransfer 96.1 0.0038 1.3E-07 46.6 3.4 21 43-63 9-29 (227)
322 1jbk_A CLPB protein; beta barr 96.1 0.0037 1.3E-07 44.5 3.2 21 43-63 45-65 (195)
323 1aky_A Adenylate kinase; ATP:A 96.1 0.0038 1.3E-07 46.3 3.3 21 43-63 6-26 (220)
324 2pt5_A Shikimate kinase, SK; a 96.1 0.0041 1.4E-07 43.9 3.3 21 43-63 2-22 (168)
325 1u0l_A Probable GTPase ENGC; p 96.1 0.0037 1.3E-07 49.0 3.4 23 43-65 171-193 (301)
326 2pjz_A Hypothetical protein ST 96.1 0.0033 1.1E-07 48.5 3.0 23 43-65 32-54 (263)
327 1ak2_A Adenylate kinase isoenz 96.1 0.0046 1.6E-07 46.4 3.7 21 43-63 18-38 (233)
328 1tev_A UMP-CMP kinase; ploop, 96.1 0.0044 1.5E-07 44.6 3.5 21 43-63 5-25 (196)
329 2ze6_A Isopentenyl transferase 96.1 0.0036 1.2E-07 47.8 3.1 21 43-63 3-23 (253)
330 1puj_A YLQF, conserved hypothe 96.1 0.0027 9.1E-08 49.5 2.4 55 96-157 5-63 (282)
331 1gtv_A TMK, thymidylate kinase 96.0 0.0016 5.3E-08 48.0 1.0 21 43-63 2-22 (214)
332 2bbs_A Cystic fibrosis transme 96.0 0.0036 1.2E-07 49.0 3.1 22 43-64 66-87 (290)
333 2c95_A Adenylate kinase 1; tra 96.0 0.0043 1.5E-07 44.8 3.2 21 43-63 11-31 (196)
334 2jeo_A Uridine-cytidine kinase 96.0 0.004 1.4E-07 47.1 3.2 21 43-63 27-47 (245)
335 3tlx_A Adenylate kinase 2; str 96.0 0.0051 1.8E-07 46.6 3.7 21 43-63 31-51 (243)
336 2yvu_A Probable adenylyl-sulfa 96.0 0.0063 2.2E-07 43.8 4.0 21 43-63 15-35 (186)
337 3fvq_A Fe(3+) IONS import ATP- 96.0 0.0041 1.4E-07 50.2 3.2 23 43-65 32-54 (359)
338 2z0h_A DTMP kinase, thymidylat 96.0 0.0044 1.5E-07 44.8 3.2 21 43-63 2-22 (197)
339 2qt1_A Nicotinamide riboside k 96.0 0.0051 1.8E-07 45.1 3.5 22 43-64 23-44 (207)
340 1gvn_B Zeta; postsegregational 96.0 0.0062 2.1E-07 47.4 4.2 21 43-63 35-55 (287)
341 2v54_A DTMP kinase, thymidylat 96.0 0.0048 1.6E-07 44.9 3.3 22 43-64 6-27 (204)
342 3jvv_A Twitching mobility prot 96.0 0.0042 1.4E-07 50.0 3.2 21 43-63 125-145 (356)
343 1rj9_A FTSY, signal recognitio 95.9 0.0043 1.5E-07 48.9 3.2 20 43-62 104-123 (304)
344 2bwj_A Adenylate kinase 5; pho 95.9 0.0048 1.7E-07 44.7 3.2 21 43-63 14-34 (199)
345 3b9q_A Chloroplast SRP recepto 95.9 0.0045 1.6E-07 48.7 3.2 21 43-63 102-122 (302)
346 1xjc_A MOBB protein homolog; s 95.9 0.005 1.7E-07 44.3 3.1 21 43-63 6-26 (169)
347 2gza_A Type IV secretion syste 95.9 0.007 2.4E-07 48.7 4.4 22 43-64 177-198 (361)
348 2xb4_A Adenylate kinase; ATP-b 95.9 0.0052 1.8E-07 45.9 3.4 21 43-63 2-22 (223)
349 1t9h_A YLOQ, probable GTPase E 95.9 0.0012 4.1E-08 52.1 -0.2 22 43-64 175-196 (307)
350 1z47_A CYSA, putative ABC-tran 95.9 0.0045 1.5E-07 49.8 3.1 22 43-64 43-64 (355)
351 3nh6_A ATP-binding cassette SU 95.9 0.0025 8.6E-08 50.3 1.6 21 43-63 82-102 (306)
352 1qf9_A UMP/CMP kinase, protein 95.9 0.008 2.8E-07 43.1 4.2 21 43-63 8-28 (194)
353 2kjq_A DNAA-related protein; s 95.9 0.0034 1.2E-07 44.1 2.1 22 43-64 38-59 (149)
354 2x8a_A Nuclear valosin-contain 95.9 0.0049 1.7E-07 47.7 3.2 21 43-63 46-66 (274)
355 2pbr_A DTMP kinase, thymidylat 95.9 0.0054 1.9E-07 44.1 3.2 21 43-63 2-22 (195)
356 2w0m_A SSO2452; RECA, SSPF, un 95.9 0.0052 1.8E-07 45.4 3.2 21 43-63 25-45 (235)
357 1ixz_A ATP-dependent metallopr 95.9 0.005 1.7E-07 46.7 3.1 22 43-64 51-72 (254)
358 1e6c_A Shikimate kinase; phosp 95.9 0.0053 1.8E-07 43.4 3.1 21 43-63 4-24 (173)
359 2yyz_A Sugar ABC transporter, 95.9 0.0048 1.7E-07 49.7 3.1 22 43-64 31-52 (359)
360 1odf_A YGR205W, hypothetical 3 95.9 0.0075 2.6E-07 47.1 4.2 20 43-62 33-52 (290)
361 1nn5_A Similar to deoxythymidy 95.8 0.0056 1.9E-07 44.9 3.3 21 43-63 11-31 (215)
362 1uf9_A TT1252 protein; P-loop, 95.8 0.007 2.4E-07 43.9 3.8 22 43-64 10-31 (203)
363 1rz3_A Hypothetical protein rb 95.8 0.0056 1.9E-07 44.9 3.2 21 43-63 24-44 (201)
364 2iyv_A Shikimate kinase, SK; t 95.8 0.0055 1.9E-07 44.0 3.1 21 43-63 4-24 (184)
365 2it1_A 362AA long hypothetical 95.8 0.005 1.7E-07 49.7 3.1 22 43-64 31-52 (362)
366 3a4m_A L-seryl-tRNA(SEC) kinas 95.8 0.0052 1.8E-07 47.0 3.1 21 43-63 6-26 (260)
367 3tui_C Methionine import ATP-b 95.8 0.0051 1.7E-07 49.7 3.1 22 43-64 56-77 (366)
368 3kta_A Chromosome segregation 95.8 0.0058 2E-07 43.8 3.2 20 44-63 29-48 (182)
369 3rlf_A Maltose/maltodextrin im 95.8 0.0051 1.8E-07 50.0 3.1 22 43-64 31-52 (381)
370 2ewv_A Twitching motility prot 95.8 0.0054 1.9E-07 49.6 3.3 21 43-63 138-158 (372)
371 2vp4_A Deoxynucleoside kinase; 95.8 0.0036 1.2E-07 46.9 2.1 22 43-64 22-43 (230)
372 2pt7_A CAG-ALFA; ATPase, prote 95.8 0.0047 1.6E-07 49.2 2.8 22 43-64 173-194 (330)
373 3e70_C DPA, signal recognition 95.8 0.0054 1.9E-07 48.8 3.1 21 43-63 131-151 (328)
374 3umf_A Adenylate kinase; rossm 95.8 0.0061 2.1E-07 45.7 3.2 20 44-63 32-51 (217)
375 1g29_1 MALK, maltose transport 95.8 0.0054 1.8E-07 49.7 3.1 22 43-64 31-52 (372)
376 3zvl_A Bifunctional polynucleo 95.8 0.013 4.4E-07 48.1 5.4 21 43-63 260-280 (416)
377 1v43_A Sugar-binding transport 95.8 0.0055 1.9E-07 49.6 3.1 22 43-64 39-60 (372)
378 1zcb_A G alpha I/13; GTP-bindi 95.7 0.0063 2.2E-07 49.1 3.4 24 37-62 31-54 (362)
379 1sq5_A Pantothenate kinase; P- 95.7 0.0061 2.1E-07 47.9 3.2 21 43-63 82-102 (308)
380 4e22_A Cytidylate kinase; P-lo 95.7 0.0065 2.2E-07 46.3 3.2 20 43-62 29-48 (252)
381 2p5t_B PEZT; postsegregational 95.7 0.0065 2.2E-07 46.2 3.2 21 43-63 34-54 (253)
382 2pez_A Bifunctional 3'-phospho 95.7 0.0069 2.4E-07 43.3 3.1 21 43-63 7-27 (179)
383 2p65_A Hypothetical protein PF 95.7 0.0051 1.7E-07 43.7 2.4 21 43-63 45-65 (187)
384 2vli_A Antibiotic resistance p 95.7 0.0049 1.7E-07 44.1 2.2 21 43-63 7-27 (183)
385 1cr0_A DNA primase/helicase; R 95.7 0.0069 2.4E-07 47.0 3.3 21 43-63 37-57 (296)
386 1zuh_A Shikimate kinase; alpha 95.6 0.0078 2.7E-07 42.5 3.3 21 43-63 9-29 (168)
387 1p9r_A General secretion pathw 95.6 0.0067 2.3E-07 49.9 3.2 22 43-64 169-190 (418)
388 3bos_A Putative DNA replicatio 95.6 0.0072 2.5E-07 44.8 3.2 21 43-63 54-74 (242)
389 2cvh_A DNA repair and recombin 95.6 0.0076 2.6E-07 44.3 3.2 21 43-63 22-42 (220)
390 1iy2_A ATP-dependent metallopr 95.6 0.0073 2.5E-07 46.5 3.1 22 43-64 75-96 (278)
391 1m7g_A Adenylylsulfate kinase; 95.6 0.0077 2.6E-07 44.4 3.2 21 43-63 27-47 (211)
392 2og2_A Putative signal recogni 95.6 0.0074 2.5E-07 48.7 3.2 21 43-63 159-179 (359)
393 3gd7_A Fusion complex of cysti 95.6 0.0074 2.5E-07 49.2 3.2 21 43-63 49-69 (390)
394 1in4_A RUVB, holliday junction 95.6 0.0073 2.5E-07 47.9 3.1 22 43-64 53-74 (334)
395 3d31_A Sulfate/molybdate ABC t 95.5 0.0044 1.5E-07 49.8 1.8 22 43-64 28-49 (348)
396 4eaq_A DTMP kinase, thymidylat 95.5 0.0082 2.8E-07 45.2 3.2 21 43-63 28-48 (229)
397 1nij_A Hypothetical protein YJ 95.5 0.0064 2.2E-07 48.1 2.7 22 43-64 6-27 (318)
398 3tqc_A Pantothenate kinase; bi 95.5 0.012 4.3E-07 46.6 4.4 20 43-62 94-113 (321)
399 3nwj_A ATSK2; P loop, shikimat 95.5 0.0085 2.9E-07 45.8 3.2 21 43-63 50-70 (250)
400 2npi_A Protein CLP1; CLP1-PCF1 95.5 0.008 2.7E-07 50.1 3.3 22 43-64 140-161 (460)
401 1n0w_A DNA repair protein RAD5 95.5 0.0085 2.9E-07 44.7 3.1 22 43-64 26-47 (243)
402 1lv7_A FTSH; alpha/beta domain 95.5 0.0086 2.9E-07 45.4 3.2 21 43-63 47-67 (257)
403 1njg_A DNA polymerase III subu 95.5 0.0092 3.1E-07 43.9 3.2 21 43-63 47-67 (250)
404 1vht_A Dephospho-COA kinase; s 95.5 0.011 3.6E-07 43.7 3.5 21 43-63 6-26 (218)
405 2yhs_A FTSY, cell division pro 95.4 0.0083 2.8E-07 50.4 3.1 21 43-63 295-315 (503)
406 2w58_A DNAI, primosome compone 95.4 0.011 3.6E-07 43.1 3.3 21 43-63 56-76 (202)
407 2obl_A ESCN; ATPase, hydrolase 95.4 0.0099 3.4E-07 47.7 3.4 23 43-65 73-95 (347)
408 2chg_A Replication factor C sm 95.4 0.0098 3.4E-07 43.2 3.2 21 43-63 40-60 (226)
409 2oap_1 GSPE-2, type II secreti 95.4 0.012 4.1E-07 49.7 4.0 22 43-64 262-283 (511)
410 1ltq_A Polynucleotide kinase; 95.4 0.0093 3.2E-07 46.3 3.1 21 43-63 4-24 (301)
411 2xtz_A Guanine nucleotide-bind 95.4 0.01 3.5E-07 47.7 3.3 21 42-62 10-30 (354)
412 1f2t_A RAD50 ABC-ATPase; DNA d 95.3 0.011 3.8E-07 41.4 3.1 19 44-62 26-44 (149)
413 1oxx_K GLCV, glucose, ABC tran 95.3 0.0044 1.5E-07 49.8 1.1 22 43-64 33-54 (353)
414 4ido_A Atlastin-1; GTPase, GTP 95.3 0.032 1.1E-06 46.3 6.2 59 43-101 69-151 (457)
415 1uj2_A Uridine-cytidine kinase 95.3 0.013 4.3E-07 44.5 3.5 21 43-63 24-44 (252)
416 1nlf_A Regulatory protein REPA 95.2 0.012 4.2E-07 45.2 3.3 21 43-63 32-52 (279)
417 3cwq_A Para family chromosome 95.2 0.07 2.4E-06 39.2 7.2 66 89-158 67-134 (209)
418 3n70_A Transport activator; si 95.1 0.014 4.9E-07 40.4 3.1 22 43-64 26-47 (145)
419 3r20_A Cytidylate kinase; stru 95.1 0.015 5.2E-07 44.0 3.3 20 43-62 11-30 (233)
420 2dpy_A FLII, flagellum-specifi 95.0 0.014 5E-07 48.2 3.4 23 43-65 159-181 (438)
421 3h4m_A Proteasome-activating n 95.0 0.014 4.7E-07 44.8 3.1 22 43-64 53-74 (285)
422 3b9p_A CG5977-PA, isoform A; A 95.0 0.014 4.8E-07 45.1 3.1 21 43-63 56-76 (297)
423 3b60_A Lipid A export ATP-bind 95.0 0.013 4.3E-07 50.2 3.1 22 43-64 371-392 (582)
424 2grj_A Dephospho-COA kinase; T 95.0 0.018 6.1E-07 42.2 3.5 24 41-64 12-35 (192)
425 2dr3_A UPF0273 protein PH0284; 95.0 0.015 5.2E-07 43.3 3.2 21 43-63 25-45 (247)
426 1cip_A Protein (guanine nucleo 95.0 0.015 5.2E-07 46.7 3.3 21 42-62 33-53 (353)
427 2qz4_A Paraplegin; AAA+, SPG7, 95.0 0.015 5.1E-07 43.9 3.1 21 43-63 41-61 (262)
428 1yqt_A RNAse L inhibitor; ATP- 95.0 0.019 6.7E-07 48.7 4.1 22 43-64 49-70 (538)
429 2qmh_A HPR kinase/phosphorylas 95.0 0.015 5.3E-07 43.0 3.0 22 43-64 36-57 (205)
430 3syl_A Protein CBBX; photosynt 95.0 0.025 8.6E-07 43.8 4.4 20 43-62 69-88 (309)
431 2qby_A CDC6 homolog 1, cell di 94.9 0.015 5.3E-07 46.1 3.2 21 43-63 47-67 (386)
432 3b5x_A Lipid A export ATP-bind 94.9 0.014 4.9E-07 49.9 3.1 22 43-64 371-392 (582)
433 3euj_A Chromosome partition pr 94.9 0.015 5.2E-07 48.7 3.1 21 43-63 31-51 (483)
434 2px0_A Flagellar biosynthesis 94.9 0.017 5.9E-07 45.2 3.3 83 90-176 183-271 (296)
435 3t15_A Ribulose bisphosphate c 94.8 0.025 8.6E-07 44.0 4.1 21 43-63 38-58 (293)
436 1svm_A Large T antigen; AAA+ f 94.8 0.017 5.7E-07 46.9 3.2 21 43-63 171-191 (377)
437 3a8t_A Adenylate isopentenyltr 94.8 0.018 6.1E-07 46.0 3.3 21 43-63 42-62 (339)
438 1q3t_A Cytidylate kinase; nucl 94.8 0.023 7.8E-07 42.6 3.7 21 43-63 18-38 (236)
439 3exa_A TRNA delta(2)-isopenten 94.8 0.019 6.5E-07 45.4 3.3 22 43-64 5-26 (322)
440 3crm_A TRNA delta(2)-isopenten 94.8 0.018 6.2E-07 45.7 3.2 21 43-63 7-27 (323)
441 1l8q_A Chromosomal replication 94.8 0.017 5.9E-07 45.3 3.1 21 43-63 39-59 (324)
442 3cf0_A Transitional endoplasmi 94.8 0.018 6.1E-07 45.0 3.1 21 43-63 51-71 (301)
443 3qf7_A RAD50; ABC-ATPase, ATPa 94.7 0.018 6E-07 46.5 3.1 19 44-62 26-44 (365)
444 3ozx_A RNAse L inhibitor; ATP 94.7 0.021 7.1E-07 48.5 3.6 22 43-64 27-48 (538)
445 3d3q_A TRNA delta(2)-isopenten 94.7 0.02 6.7E-07 45.8 3.2 21 43-63 9-29 (340)
446 1ofh_A ATP-dependent HSL prote 94.7 0.02 6.7E-07 44.3 3.1 21 43-63 52-72 (310)
447 3ake_A Cytidylate kinase; CMP 94.6 0.022 7.5E-07 41.4 3.2 21 43-63 4-24 (208)
448 1sxj_E Activator 1 40 kDa subu 94.6 0.017 5.8E-07 45.7 2.7 21 43-63 38-58 (354)
449 1fnn_A CDC6P, cell division co 94.6 0.02 7E-07 45.6 3.1 22 43-64 46-67 (389)
450 3j16_B RLI1P; ribosome recycli 94.6 0.026 8.9E-07 48.6 3.9 22 43-64 105-126 (608)
451 3foz_A TRNA delta(2)-isopenten 94.6 0.022 7.6E-07 45.0 3.2 22 43-64 12-33 (316)
452 1vma_A Cell division protein F 94.6 0.021 7.3E-07 44.9 3.1 20 43-62 106-125 (306)
453 1d2n_A N-ethylmaleimide-sensit 94.6 0.022 7.6E-07 43.5 3.2 22 43-64 66-87 (272)
454 1azs_C GS-alpha; complex (lyas 94.5 0.025 8.7E-07 46.2 3.6 24 37-62 38-61 (402)
455 2yl4_A ATP-binding cassette SU 94.5 0.013 4.5E-07 50.2 2.0 22 43-64 372-393 (595)
456 1pzn_A RAD51, DNA repair and r 94.5 0.023 7.8E-07 45.5 3.3 22 43-64 133-154 (349)
457 2qen_A Walker-type ATPase; unk 94.5 0.022 7.6E-07 44.6 3.1 22 43-64 33-54 (350)
458 1t9h_A YLOQ, probable GTPase E 94.5 0.056 1.9E-06 42.6 5.4 49 108-157 81-130 (307)
459 4fcw_A Chaperone protein CLPB; 94.5 0.023 7.8E-07 44.1 3.0 22 43-64 49-70 (311)
460 1yqt_A RNAse L inhibitor; ATP- 94.4 0.023 8E-07 48.2 3.3 22 43-64 314-335 (538)
461 2ocp_A DGK, deoxyguanosine kin 94.4 0.026 8.9E-07 42.4 3.2 21 43-63 4-24 (241)
462 2fna_A Conserved hypothetical 94.4 0.025 8.5E-07 44.4 3.3 22 43-64 32-53 (357)
463 3qf4_B Uncharacterized ABC tra 94.4 0.015 5.2E-07 49.9 2.1 22 43-64 383-404 (598)
464 3co5_A Putative two-component 94.4 0.013 4.6E-07 40.4 1.5 20 43-62 29-48 (143)
465 1sxj_C Activator 1 40 kDa subu 94.3 0.025 8.6E-07 44.8 3.1 22 43-64 48-69 (340)
466 3qks_A DNA double-strand break 94.3 0.027 9.2E-07 41.4 3.1 19 44-62 26-44 (203)
467 1tue_A Replication protein E1; 94.3 0.019 6.6E-07 42.6 2.2 21 43-63 60-80 (212)
468 3bk7_A ABC transporter ATP-bin 94.3 0.031 1.1E-06 48.2 3.8 22 43-64 384-405 (607)
469 3bk7_A ABC transporter ATP-bin 94.3 0.029 9.9E-07 48.3 3.6 22 43-64 119-140 (607)
470 3ozx_A RNAse L inhibitor; ATP 94.3 0.022 7.4E-07 48.4 2.8 22 43-64 296-317 (538)
471 4edh_A DTMP kinase, thymidylat 94.3 0.029 9.8E-07 41.7 3.2 20 43-62 8-27 (213)
472 1xwi_A SKD1 protein; VPS4B, AA 94.3 0.026 9E-07 44.5 3.1 22 43-64 47-68 (322)
473 3uk6_A RUVB-like 2; hexameric 94.3 0.028 9.6E-07 44.7 3.3 21 43-63 72-92 (368)
474 4a82_A Cystic fibrosis transme 94.2 0.014 4.7E-07 50.0 1.4 21 43-63 369-389 (578)
475 1p5z_B DCK, deoxycytidine kina 94.2 0.015 5.1E-07 44.4 1.5 21 43-63 26-46 (263)
476 1sxj_D Activator 1 41 kDa subu 94.2 0.029 9.8E-07 44.2 3.2 22 43-64 60-81 (353)
477 1tf7_A KAIC; homohexamer, hexa 94.2 0.028 9.5E-07 47.4 3.2 19 43-61 41-59 (525)
478 2v1u_A Cell division control p 94.2 0.024 8E-07 45.1 2.6 21 43-63 46-66 (387)
479 3qf4_A ABC transporter, ATP-bi 94.2 0.017 5.9E-07 49.5 1.9 21 43-63 371-391 (587)
480 3tqf_A HPR(Ser) kinase; transf 94.1 0.043 1.5E-06 39.7 3.6 22 43-64 18-39 (181)
481 3v9p_A DTMP kinase, thymidylat 94.1 0.023 8E-07 42.7 2.3 21 43-63 27-47 (227)
482 3eie_A Vacuolar protein sortin 94.1 0.033 1.1E-06 43.8 3.3 21 43-63 53-73 (322)
483 3pfi_A Holliday junction ATP-d 94.0 0.033 1.1E-06 43.9 3.2 22 43-64 57-78 (338)
484 2qby_B CDC6 homolog 3, cell di 94.0 0.033 1.1E-06 44.4 3.2 21 43-63 47-67 (384)
485 3lv8_A DTMP kinase, thymidylat 94.0 0.037 1.3E-06 41.9 3.3 21 43-63 29-49 (236)
486 2ga8_A Hypothetical 39.9 kDa p 94.0 0.035 1.2E-06 44.6 3.3 21 43-63 26-46 (359)
487 2bjv_A PSP operon transcriptio 94.0 0.035 1.2E-06 42.2 3.2 22 43-64 31-52 (265)
488 3j16_B RLI1P; ribosome recycli 94.0 0.03 1E-06 48.2 3.1 22 44-65 381-402 (608)
489 3pxg_A Negative regulator of g 94.0 0.031 1.1E-06 46.5 3.0 21 43-63 203-223 (468)
490 2r62_A Cell division protease 93.9 0.015 5.1E-07 44.3 0.9 21 43-63 46-66 (268)
491 4f4c_A Multidrug resistance pr 93.9 0.074 2.5E-06 49.8 5.7 21 43-63 446-466 (1321)
492 2iw3_A Elongation factor 3A; a 93.9 0.039 1.3E-06 50.0 3.7 24 43-66 463-486 (986)
493 3lda_A DNA repair protein RAD5 93.9 0.036 1.2E-06 45.2 3.2 20 43-62 180-199 (400)
494 1um8_A ATP-dependent CLP prote 93.8 0.036 1.2E-06 44.5 3.1 21 43-63 74-94 (376)
495 3eph_A TRNA isopentenyltransfe 93.8 0.037 1.3E-06 45.3 3.2 21 43-63 4-24 (409)
496 4tmk_A Protein (thymidylate ki 93.8 0.043 1.5E-06 40.8 3.3 21 43-63 5-25 (213)
497 2qgz_A Helicase loader, putati 93.8 0.041 1.4E-06 43.2 3.3 21 43-63 154-174 (308)
498 4b4t_K 26S protease regulatory 93.8 0.037 1.3E-06 45.6 3.2 21 43-63 208-228 (428)
499 2qp9_X Vacuolar protein sortin 93.8 0.039 1.3E-06 44.2 3.2 22 43-64 86-107 (355)
500 3cr8_A Sulfate adenylyltranfer 93.8 0.025 8.4E-07 48.2 2.1 21 43-63 371-391 (552)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=2.6e-32 Score=207.99 Aligned_cols=140 Identities=32% Similarity=0.598 Sum_probs=117.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+|+|++|||||||++||..+.|.+.+.||+|.++..+.+..++..+.+.+|||+|+++|..+++.++++++++++||
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~ 93 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVY 93 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEE
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEe
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh-CCCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENN-CEVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~-~~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++++||+++..|+..+.+. .+++|++| |||+|+ .++.++.+ +++.+.++ .++|+|.++
T Consensus 94 di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~-~~~e~SAkt 159 (216)
T 4dkx_A 94 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNV-MFIETSAKA 159 (216)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEEEBTTT
T ss_pred ecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCC-eeEEEeCCC
Confidence 999999999999999999874 57789887 999999 45666543 67777776 589998765
No 2
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=184.75 Aligned_cols=155 Identities=35% Similarity=0.645 Sum_probs=116.3
Q ss_pred cCCCCCCCCCCCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccc
Q psy1417 26 QIPTGRGKNGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT 105 (188)
Q Consensus 26 ~~~~~~~~~~~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~ 105 (188)
+.+.+.........+ ||+++|++|||||||+++|.++.+...+.+|++.++....+.+++..+.+.+||++|++++..
T Consensus 16 ~~~~~~~~~~~~~~~--ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 93 (201)
T 2hup_A 16 PRGSGDPDEQYDFLF--KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRT 93 (201)
T ss_dssp ----------CCEEE--EEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHH
T ss_pred cCCCCCcccccccce--EEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHH
Confidence 333334444445555 999999999999999999999998888889999888888888999889999999999999999
Q ss_pred cchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCCC-Cccchh---hhhhhcCCCCceEEee
Q psy1417 106 ITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGLN-QRSIDE---VNLCHRGSVDGSVEST 179 (188)
Q Consensus 106 ~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl~-~~~i~~---~~~~~~~~~~~~~e~~ 179 (188)
.+..+++.+|++++|||++++++|+.+..|+..+.+.. +++|++| +||+|+. .+.+.. .+++...+...++++|
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~S 173 (201)
T 2hup_A 94 ITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETS 173 (201)
T ss_dssp HHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECB
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEe
Confidence 99999999999999999999999999999999998865 6788877 9999993 344432 2566666666788888
Q ss_pred ccc
Q psy1417 180 SVD 182 (188)
Q Consensus 180 ~~~ 182 (188)
.++
T Consensus 174 A~~ 176 (201)
T 2hup_A 174 AKD 176 (201)
T ss_dssp TTT
T ss_pred CCC
Confidence 665
No 3
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.96 E-value=5.6e-28 Score=183.30 Aligned_cols=140 Identities=20% Similarity=0.456 Sum_probs=121.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.++.+...+.+|++..+. ..+.+++..+.+.+||++|++++...+..+++.+|++++||
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 106 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCF 106 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEE
Confidence 49999999999999999999999999999999997774 56778888899999999999999999999999999999999
Q ss_pred eCCChhhHHH-HHHHHHHHHhhCCCceEEE-EEcCCCCC-------------ccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFAN-VKRWLHEIENNCEVVNRIL-GLRLGLNQ-------------RSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~-~~~~~~~i~~~~~~~pilv-gnK~Dl~~-------------~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++.++|+. +..|+..+.+..+++|++| |||+|+.+ +.+..+ +++...++..++|+|.++
T Consensus 107 d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~ 185 (214)
T 3q3j_B 107 DISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFT 185 (214)
T ss_dssp ETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred ECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCC
Confidence 9999999999 6899999999888899888 99999943 344432 677777777889998765
No 4
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.95 E-value=3.6e-27 Score=175.28 Aligned_cols=149 Identities=36% Similarity=0.640 Sum_probs=119.4
Q ss_pred CCCCCCCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhc
Q psy1417 31 RGKNGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110 (188)
Q Consensus 31 ~~~~~~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~ 110 (188)
.........+ ||+++|++|||||||+++|.++.+...+.++++.++....+.+++..+.+.+||++|++.+...+..+
T Consensus 13 ~~~~~~~~~~--ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 90 (191)
T 2a5j_A 13 GLVPRGSYLF--KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSY 90 (191)
T ss_dssp CCCCTTCEEE--EEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHH
T ss_pred ccccccCcce--EEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHH
Confidence 3334444445 99999999999999999999999888888999988888888899999999999999999999999999
Q ss_pred cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 111 ~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
++.+|++++|||+++.++++.+..|+..+.+.. +++|+++ +||+|+ .++.+..+ +++...+. .++++|.++
T Consensus 91 ~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~ 167 (191)
T 2a5j_A 91 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGL-IFMETSAKT 167 (191)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEEECTTT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 999999999999999999999999999998854 5688877 999999 33444322 45544443 677877654
No 5
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.95 E-value=4.1e-27 Score=172.46 Aligned_cols=144 Identities=64% Similarity=1.007 Sum_probs=120.9
Q ss_pred CCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCC
Q psy1417 36 PTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTH 115 (188)
Q Consensus 36 ~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~ 115 (188)
..+.+ ||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|
T Consensus 6 ~~~~~--~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 83 (181)
T 3tw8_B 6 YDHLF--KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTH 83 (181)
T ss_dssp CCEEE--EEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCS
T ss_pred cCcce--EEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCC
Confidence 34455 9999999999999999999999888888899998898889999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 116 GVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 116 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
++++|||++++.+++.+..|+..+.+..+++|+++ +||+|+. .+.+... +++...+. .++++|.++
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 154 (181)
T 3tw8_B 84 GVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGI-QLFETSAKE 154 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-CEEECBTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCC-eEEEEECCC
Confidence 99999999999999999999999999888899887 9999983 3333322 44444444 577777654
No 6
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.95 E-value=2.9e-27 Score=175.58 Aligned_cols=140 Identities=24% Similarity=0.384 Sum_probs=114.1
Q ss_pred cceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEE
Q psy1417 40 FSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIV 119 (188)
Q Consensus 40 ~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vil 119 (188)
..+||+++|++|||||||+++|.++.+...+.+|++..+. ..+.+++..+.+.+||++|++++... ..+++.+|++++
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~il 97 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLV 97 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-EEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEE
Confidence 3459999999999999999999999998889999987763 56778889999999999999988765 668999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhC----CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeec-cc
Q psy1417 120 VYDVTSGETFANVKRWLHEIENNC----EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTS-VD 182 (188)
Q Consensus 120 v~d~~~~~s~~~~~~~~~~i~~~~----~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~-~~ 182 (188)
|||++++++|+.+..|+..+.+.. +++|+++ |||+|+ .++.+..+ +++...++ .++++|. ++
T Consensus 98 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~ 169 (187)
T 3c5c_A 98 VYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGC-LFFEVSACLD 169 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-EEEECCSSSC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCC-cEEEEeecCc
Confidence 999999999999999999998763 5788877 999999 34444432 56666554 6788887 44
No 7
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.95 E-value=4e-27 Score=177.63 Aligned_cols=141 Identities=21% Similarity=0.482 Sum_probs=121.0
Q ss_pred cceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEE
Q psy1417 40 FSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIV 119 (188)
Q Consensus 40 ~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vil 119 (188)
..+||+++|++|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+...+..+++.+|++++
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 345999999999999999999999999888889998776 3567778888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHH-HHHHHHHHhhCCCceEEE-EEcCCCCC-------------ccchhh---hhhhcCCCCceEEeecc
Q psy1417 120 VYDVTSGETFANV-KRWLHEIENNCEVVNRIL-GLRLGLNQ-------------RSIDEV---NLCHRGSVDGSVESTSV 181 (188)
Q Consensus 120 v~d~~~~~s~~~~-~~~~~~i~~~~~~~pilv-gnK~Dl~~-------------~~i~~~---~~~~~~~~~~~~e~~~~ 181 (188)
|||++++++|+.+ ..|+..+.+..+++|+++ |||+|+.. +.++.+ +++...+...++++|++
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 185 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 185 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeec
Confidence 9999999999999 789999998888899888 99999942 334332 55666566678999886
No 8
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.95 E-value=1.2e-26 Score=172.03 Aligned_cols=144 Identities=36% Similarity=0.722 Sum_probs=122.0
Q ss_pred CCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCC
Q psy1417 36 PTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTH 115 (188)
Q Consensus 36 ~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~ 115 (188)
..+.+ ||+++|++|||||||+++|.++.+...+.++++.++....+..++..+.+.+||++|++.+...+..+++.+|
T Consensus 19 ~~~~~--ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 96 (189)
T 2gf9_A 19 SDYMF--KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAM 96 (189)
T ss_dssp CSEEE--EEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCS
T ss_pred cCcee--EEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCC
Confidence 34455 9999999999999999999999988888899998888888888888999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccchh---hhhhhcCCCCceEEeeccc
Q psy1417 116 GVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSIDE---VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 116 ~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~~---~~~~~~~~~~~~~e~~~~~ 182 (188)
++++|||+++..+++.+..|+..+.+.. +++|+++ +||+|+ .++.+.. .+++...+. .++++|.++
T Consensus 97 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 168 (189)
T 2gf9_A 97 GFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGF-EFFEASAKE 168 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECBTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCC-eEEEEECCC
Confidence 9999999999999999999999998865 5688877 999999 3344432 245555554 677777654
No 9
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.95 E-value=6.2e-27 Score=173.63 Aligned_cols=143 Identities=36% Similarity=0.665 Sum_probs=121.0
Q ss_pred CcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccc-ccchhccccCC
Q psy1417 37 THIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR-TITSTYYRGTH 115 (188)
Q Consensus 37 ~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-~~~~~~~~~~~ 115 (188)
.+.+ ||+++|++|||||||+++|.++.+...+.++++.++....+.+++..+.+.+||++|++++. ..+..+++.+|
T Consensus 18 ~~~~--ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 18 SRIF--KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp -CEE--EEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CceE--EEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 3445 99999999999999999999999988888999988888888899989999999999999988 78888999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 116 GVIVVYDVTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 116 ~vilv~d~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
++++|||+++..+++.+..|+..+.+.. .++|+++ +||+|+ ..+.+..+ +++...+. .++++|.++
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~ 168 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSM-PLFETSAKN 168 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-CEEECCSSS
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCC-EEEEEeCCc
Confidence 9999999999999999999999998864 5688877 999999 34444322 45555554 577877665
No 10
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=7.3e-27 Score=175.73 Aligned_cols=140 Identities=41% Similarity=0.723 Sum_probs=119.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.++.+...+.+|++.++....+.+++..+.+.+||++|++++...+..+++.+|++++||
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 106 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTY 106 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEE
Confidence 49999999999999999999999998888999999998889999999999999999999999988999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++..+|+.+..|+..+.... .++|+++ |||+|+ .++.+..+ +++...+ ..++++|.++
T Consensus 107 D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 172 (201)
T 2ew1_A 107 DITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQD-MYYLETSAKE 172 (201)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT-CCEEECCTTT
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-CEEEEEeCCC
Confidence 9999999999999999998865 4688777 999998 34444332 3444444 3567777654
No 11
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.95 E-value=8.2e-27 Score=172.40 Aligned_cols=139 Identities=22% Similarity=0.490 Sum_probs=120.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.++.+...+.+|++..+. ..+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 86 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF 86 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEE
Confidence 49999999999999999999999998888899887664 56678888899999999999999999999999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHhhCCCceEEE-EEcCCCCC-------------ccchhh---hhhhcCCCCceEEeecc
Q psy1417 122 DVTSGETFANV-KRWLHEIENNCEVVNRIL-GLRLGLNQ-------------RSIDEV---NLCHRGSVDGSVESTSV 181 (188)
Q Consensus 122 d~~~~~s~~~~-~~~~~~i~~~~~~~pilv-gnK~Dl~~-------------~~i~~~---~~~~~~~~~~~~e~~~~ 181 (188)
|++++++|+.+ ..|+..+.+..+++|+++ |||+|+.+ +.++.+ +++...+...++++|++
T Consensus 87 d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 164 (184)
T 1m7b_A 87 DISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 164 (184)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTT
T ss_pred ECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeec
Confidence 99999999999 689999998888899888 99999942 334332 46666666688999886
No 12
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.9e-27 Score=176.14 Aligned_cols=153 Identities=38% Similarity=0.676 Sum_probs=116.4
Q ss_pred CCCCCCCCCCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy1417 28 PTGRGKNGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTIT 107 (188)
Q Consensus 28 ~~~~~~~~~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~ 107 (188)
+++..+......+ ||+++|+.|||||||+++|.++.+...+.++++.++....+.+++..+.+.+||++|++++...+
T Consensus 15 ~~~~~p~~~~~~~--ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 92 (192)
T 2il1_A 15 VPRGSPRPADFKL--QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSIT 92 (192)
T ss_dssp -------CCSEEE--EEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH
T ss_pred CCCCCCcccCCce--EEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHH
Confidence 3344444445556 99999999999999999999988888888999988888888899989999999999999999889
Q ss_pred hhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeecc
Q psy1417 108 STYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSV 181 (188)
Q Consensus 108 ~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~ 181 (188)
..+++.+|++++|||+++..+++.+..|+..+.... .++|++| +||+|+ .++.+..+ +++.......++++|.+
T Consensus 93 ~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 172 (192)
T 2il1_A 93 SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAK 172 (192)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTT
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCC
Confidence 999999999999999999999999999999988865 4688887 999999 34444332 45554445567888766
Q ss_pred c
Q psy1417 182 D 182 (188)
Q Consensus 182 ~ 182 (188)
+
T Consensus 173 ~ 173 (192)
T 2il1_A 173 D 173 (192)
T ss_dssp T
T ss_pred C
Confidence 5
No 13
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.95 E-value=1.3e-26 Score=171.81 Aligned_cols=135 Identities=21% Similarity=0.280 Sum_probs=113.8
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
++||+++|++|||||||+++|+++.+...+.+|.+ .+ ...+.+++..+.+.+||++|++.+. +++.+|++++|
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v 92 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFV 92 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEE
Confidence 44999999999999999999999999888888844 44 3778889999999999999998876 67889999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCCC---Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGLN---QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl~---~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
||++++.+|+.+..|+..+.... +++|+++ |||+|+. .+.++.+ +++...+...++++|.++
T Consensus 93 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 163 (184)
T 3ihw_A 93 FSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATY 163 (184)
T ss_dssp EETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTT
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCC
Confidence 99999999999999999998864 5688887 9999982 3444433 567776667889998765
No 14
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.95 E-value=1.5e-26 Score=170.27 Aligned_cols=138 Identities=28% Similarity=0.429 Sum_probs=118.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.++.+...+.++.+..+ ......++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVY 97 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEE
Confidence 4999999999999999999999999888999988777 677788999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeecc
Q psy1417 122 DVTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSV 181 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~ 181 (188)
|++++++|+.+..|+..+.+. ..++|+++ +||+|+ ..+.+..+ +++...+ ..++++|.+
T Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~ 163 (183)
T 3kkq_A 98 SVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSAK 163 (183)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT-CCEEEEBCS
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhC-CeEEEeccC
Confidence 999999999999999998763 35688877 999999 44444433 5666656 458888876
No 15
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.95 E-value=1.5e-26 Score=172.15 Aligned_cols=140 Identities=26% Similarity=0.535 Sum_probs=122.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.++.+...+.+|++..+. ..+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 102 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCF 102 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEE
Confidence 49999999999999999999999998888999987776 46778899999999999999999999999999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHhhCCCceEEE-EEcCCCCC---ccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANV-KRWLHEIENNCEVVNRIL-GLRLGLNQ---RSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~-~~~~~~i~~~~~~~pilv-gnK~Dl~~---~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++++.+ ..|+..+....+++|+++ |||+|+.+ +.+..+ +++...+...++++|.++
T Consensus 103 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 171 (194)
T 3reg_A 103 AVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVA 171 (194)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTT
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCC
Confidence 99999999997 679999998888899888 99999832 444333 567777777789988765
No 16
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.95 E-value=4.2e-27 Score=173.32 Aligned_cols=140 Identities=42% Similarity=0.840 Sum_probs=93.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.++.+...+.++++.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 88 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVY 88 (183)
T ss_dssp EEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEE
Confidence 49999999999999999999988888888899998888888888999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++.+++.+..|+..+.... +++|+++ +||+|+. ++.+..+ +++...+. .++++|+++
T Consensus 89 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~ 154 (183)
T 2fu5_C 89 DITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGI-KFMETSAKA 154 (183)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTC-EEEECCC--
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 9999999999999999998864 5688877 9999994 3444322 45555554 577777654
No 17
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.95 E-value=3.6e-26 Score=167.70 Aligned_cols=141 Identities=34% Similarity=0.600 Sum_probs=120.3
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
.+||+++|++|||||||+++|.++.+...+.++++.++....+.+++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 91 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEE
Confidence 34999999999999999999999998888889999888888888999899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
||+++..+++.+..|+..+.+.. +++|+++ +||+|+ ..+.+..+ +++...+. .++++|.++
T Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 158 (181)
T 2efe_B 92 FDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGL-FFMETSAKT 158 (181)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EEEECCSSS
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCC-EEEEEECCC
Confidence 99999999999999999998865 5788877 999999 34444332 45554443 567777654
No 18
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.95 E-value=1e-26 Score=168.43 Aligned_cols=140 Identities=33% Similarity=0.577 Sum_probs=120.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.++.+...+.++++.++....+.+++..+.+.+||++|++.+......+++.+|++++||
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 85 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVF 85 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEE
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEE
Confidence 39999999999999999999999988888999998888888889998999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++..+++.+..|+..+....++.|+++ +||+|+ ..+.+..+ +++...+. .++++|.++
T Consensus 86 d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 150 (168)
T 1z2a_A 86 STTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKL-RFYRTSVKE 150 (168)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-EEEECBTTT
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCC-eEEEEecCC
Confidence 99999999999999999988767788887 999998 33444322 45554444 667777654
No 19
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.95 E-value=2.5e-26 Score=167.98 Aligned_cols=141 Identities=33% Similarity=0.615 Sum_probs=117.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 87 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTF 87 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEE
Confidence 49999999999999999999999988888899998888888889999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-----CCceEEE-EEcCCCCCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-----EVVNRIL-GLRLGLNQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-----~~~pilv-gnK~Dl~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++..+++.+..|+..+.... .++|+++ +||+|+.++.+..+ +++.......++++|+++
T Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (177)
T 1wms_A 88 SVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKD 157 (177)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTT
T ss_pred ECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCC
Confidence 9999999999999999988743 5678877 99999965444332 444434556778887665
No 20
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.95 E-value=2e-26 Score=171.28 Aligned_cols=144 Identities=40% Similarity=0.678 Sum_probs=121.2
Q ss_pred CCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCC
Q psy1417 36 PTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTH 115 (188)
Q Consensus 36 ~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~ 115 (188)
....+ ||+|+|++|||||||+++|.++.+...+.++++.++....+.+++..+.+.+||++|++++...+..+++.+|
T Consensus 22 ~~~~~--ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 22 YNFVF--KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp CSEEE--EEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred cCcce--EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 34445 9999999999999999999999988888899998888888888999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 116 GVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 116 ~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
++++|||+++..+++.+..|+..+.... .++|+++ +||+|+ ..+.+..+ +++...+. .++++|.++
T Consensus 100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 171 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGL-LFLETSALD 171 (193)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEEECTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999999999999999998754 5688877 999999 33333322 45555454 677887654
No 21
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.95 E-value=5e-26 Score=167.21 Aligned_cols=139 Identities=33% Similarity=0.446 Sum_probs=117.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 85 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVY 85 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEE
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEE
Confidence 4999999999999999999999999989999998777 677788999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++++.+..|+..+.+.. +++|+++ +||+|+ ..+.+..+ +++...+. .++++|.++
T Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 152 (181)
T 3t5g_A 86 SVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNA-AFLESSAKE 152 (181)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EEEECCTTS
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCC-cEEEEecCC
Confidence 9999999999999999997754 4688877 999999 44555433 45555554 577877654
No 22
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=3.2e-26 Score=167.87 Aligned_cols=144 Identities=40% Similarity=0.745 Sum_probs=112.6
Q ss_pred CCcccceeEEEEeCCCCCHHHHHHHHHhCCCC-CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccC
Q psy1417 36 PTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFS-GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGT 114 (188)
Q Consensus 36 ~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~ 114 (188)
....+ ||+++|++|||||||+++|.++.+. ..+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+
T Consensus 7 ~~~~~--~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 7 YDVAF--KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CSEEE--EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred CCcce--EEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 34445 9999999999999999999998875 46778999888888888899999999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 115 HGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 115 ~~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++|||++++.+++.+..|+..+.... .++|+++ +||+|+. ++.+..+ +++...+. .++++|.++
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 157 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGL-PFMETSAKT 157 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 99999999999999999999999998865 5688887 9999993 4444322 45555454 577777654
No 23
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.95 E-value=4.9e-26 Score=165.12 Aligned_cols=140 Identities=35% Similarity=0.605 Sum_probs=120.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+|++++||
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 86 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVY 86 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEE
Confidence 49999999999999999999999988888999998888888889999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh-CCCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENN-CEVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~-~~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++.+++.+..|+..+... .+.+|+++ +||+|+ ..+.+..+ +++...+ ..++++|.++
T Consensus 87 d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 152 (170)
T 1z0j_A 87 DITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIH-AIFVETSAKN 152 (170)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECBTTT
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcC-CEEEEEeCCC
Confidence 999999999999999999886 46788877 999999 33444322 4455444 4677777654
No 24
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.95 E-value=2.8e-26 Score=167.74 Aligned_cols=140 Identities=39% Similarity=0.659 Sum_probs=119.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEE
Confidence 39999999999999999999999988888899998888888888999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++..+++.+..|+..+.... +++|+++ +||+|+ .++.+..+ +++...+ ..++++|+++
T Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 161 (179)
T 1z0f_A 96 DITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENG-LLFLEASAKT 161 (179)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECCTTT
T ss_pred eCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEeCCC
Confidence 9999999999999999998865 6788887 999999 33444322 4555544 3577777654
No 25
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.95 E-value=1.7e-26 Score=172.77 Aligned_cols=144 Identities=28% Similarity=0.478 Sum_probs=112.5
Q ss_pred CCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCC
Q psy1417 36 PTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTH 115 (188)
Q Consensus 36 ~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~ 115 (188)
....+ ||+++|++|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||++|++++...+..+++++|
T Consensus 17 ~~~~~--ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 17 EGRGV--KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp ---CE--EEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCcce--EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 34445 999999999999999999999888888888887655 456778888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCCCC-------------ccchh---hhhhhcCCCCceEE
Q psy1417 116 GVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGLNQ-------------RSIDE---VNLCHRGSVDGSVE 177 (188)
Q Consensus 116 ~vilv~d~~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl~~-------------~~i~~---~~~~~~~~~~~~~e 177 (188)
++++|||++++++++.+. .|+..+....+++|+++ |||+|+.. +.+.. .+++...+...+++
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE 173 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 999999999999999997 79999999888899888 99999832 33332 24555556667888
Q ss_pred eeccc
Q psy1417 178 STSVD 182 (188)
Q Consensus 178 ~~~~~ 182 (188)
+|.++
T Consensus 174 ~Sa~~ 178 (201)
T 2q3h_A 174 CSALT 178 (201)
T ss_dssp CCTTT
T ss_pred EecCC
Confidence 88664
No 26
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.95 E-value=1.9e-26 Score=167.39 Aligned_cols=140 Identities=32% Similarity=0.634 Sum_probs=112.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.++.+...+.++++.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 86 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVY 86 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEE
Confidence 49999999999999999999999988888899998888888888999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccchh---hhhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSIDE---VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~~---~~~~~~~~~~~~~e~~~~~ 182 (188)
|+++..+++.+..|+..+.... +++|+++ +||+|+ +++.+.. .+++...+ ..++++|+++
T Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 152 (170)
T 1z08_A 87 DITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVG-AKHYHTSAKQ 152 (170)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEEEBTTT
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcC-CeEEEecCCC
Confidence 9999999999999999988754 5688877 999999 3344432 24555544 4567877654
No 27
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.95 E-value=2e-26 Score=167.20 Aligned_cols=140 Identities=46% Similarity=0.838 Sum_probs=113.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 83 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVY 83 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEE
Confidence 49999999999999999999999988888899998888888888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCCCCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGLNQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++..+++.+..|+..+.... +++|+++ +||+|+..+.+..+ +++...+. .++++|.++
T Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (170)
T 1g16_A 84 DITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGI-PFIESSAKN 148 (170)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTC-CEEECBTTT
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCC-eEEEEECCC
Confidence 9999999999999999998865 5688877 99999955444322 45555554 577777654
No 28
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=3.3e-26 Score=165.83 Aligned_cols=141 Identities=33% Similarity=0.592 Sum_probs=119.4
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
++||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence 35999999999999999999999998888889999888888888999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CC---ccchhh---hhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQ---RSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~---~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
||++++.+++.+..|+..+.+.. +++|+++ +||+|+ .+ +.+..+ +++...+. .++++|+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~ 152 (170)
T 1ek0_A 83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGL-LFFETSAKT 152 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred EecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 99999999999999999998865 5788877 999998 22 334322 34444443 567777654
No 29
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.95 E-value=4.3e-26 Score=170.73 Aligned_cols=140 Identities=37% Similarity=0.720 Sum_probs=120.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+|+|++|||||||+++|.++.+...+.++++.++....+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 88 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMY 88 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEE
Confidence 39999999999999999999999988888899998888888888999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++..+++.+..|+..+.... +++|+++ +||+|+ ..+.+..+ +++...++ .++++|.++
T Consensus 89 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 154 (203)
T 1zbd_A 89 DITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGF-EFFEASAKD 154 (203)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTC-EEEECBTTT
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCC-eEEEEECCC
Confidence 9999999999999999998865 5688887 999999 33444322 45555454 577777654
No 30
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.95 E-value=6.6e-26 Score=170.23 Aligned_cols=140 Identities=51% Similarity=0.893 Sum_probs=120.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+|+|++|||||||+++|.++.+...+.++++.++....+.+++..+.+.+||++|++++...+..+++.+|++++||
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~ 88 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVY 88 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEE
Confidence 39999999999999999999999998888999999998888889999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++..+++.+..|+..+.... +++|+++ +||+|+. ++.+..+ +++...+. .++++|.++
T Consensus 89 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 154 (206)
T 2bcg_Y 89 DVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKM-PFLETSALD 154 (206)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-CEEECCTTT
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 9999999999999999998865 5688877 9999993 3444322 45555553 567777554
No 31
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=3.2e-26 Score=170.30 Aligned_cols=140 Identities=25% Similarity=0.439 Sum_probs=119.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||++|++++...+..+++.+|++++||
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 97 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 97 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEE
Confidence 4999999999999999999999999888889988666 456777888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCCCC-------------ccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGLNQ-------------RSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl~~-------------~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++|+.+. .|+..+.+..+++|+++ +||+|+.. +.+..+ +++...+...++++|.++
T Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 176 (194)
T 2atx_A 98 SVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALT 176 (194)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTT
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCC
Confidence 999999999997 79999999888899888 99999943 233322 456666666788888765
No 32
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=1.2e-27 Score=177.84 Aligned_cols=141 Identities=38% Similarity=0.703 Sum_probs=121.3
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
.+||+|+|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 102 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 102 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEE
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEE
Confidence 34999999999999999999999998888889999888888888888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
||++++++++.+..|+..+.... +++|+++ +||+|+ .++.+..+ +++...++ .++++|.++
T Consensus 103 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 169 (191)
T 3dz8_A 103 YDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGF-DFFEASAKE 169 (191)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECBTTT
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-eEEEEECCC
Confidence 99999999999999999999865 5788887 999999 34444332 45555554 678887654
No 33
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.94 E-value=6e-26 Score=168.68 Aligned_cols=142 Identities=54% Similarity=0.922 Sum_probs=122.4
Q ss_pred cccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEE
Q psy1417 38 HIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 117 (188)
Q Consensus 38 ~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~v 117 (188)
..+ ||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++
T Consensus 15 ~~~--ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 15 YLF--KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp EEE--EEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cce--EEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 445 999999999999999999999999988899999999989999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccchh---hhhhhcCCCCceEEeeccc
Q psy1417 118 IVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSIDE---VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 118 ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~~---~~~~~~~~~~~~~e~~~~~ 182 (188)
++|||+++..+++.+..|+..+.... +++|+++ +||+|+ ..+.+.. .+++...+. .++++|.++
T Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI-PFLETSAKN 162 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-CEEEECTTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC-cEEEEeCCC
Confidence 99999999999999999999998865 4688877 999998 4444442 245555554 577877654
No 34
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=5.5e-26 Score=168.61 Aligned_cols=141 Identities=47% Similarity=0.834 Sum_probs=120.6
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
.+||+++|++|||||||+++|.++.+...+.++++.++....+.+++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 94 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILV 94 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEE
Confidence 34999999999999999999999998888899999888888888999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCCCCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGLNQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
||++++.+++.+..|+..+.+.. .++|+++ +||+|+..+.+..+ +++...+. .+++++.++
T Consensus 95 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 161 (195)
T 1x3s_A 95 YDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSM-LFIEASAKT 161 (195)
T ss_dssp EETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCC-EEEEecCCC
Confidence 99999999999999999998754 5688777 99999965554422 45555443 567777554
No 35
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.94 E-value=8.3e-26 Score=163.71 Aligned_cols=141 Identities=36% Similarity=0.600 Sum_probs=119.5
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
.+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV 85 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEE
Confidence 34999999999999999999999998888889999888888888899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhh-CCCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANVKRWLHEIENN-CEVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~~-~~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
||++++.+++.+..|+..+.+. .+++|+++ |||+|+ .++.++.+ +++...+ ..++++|.++
T Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 152 (170)
T 1r2q_A 86 YDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNS-LLFMETSAKT 152 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEECCTTT
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcC-CeEEEEeCCC
Confidence 9999999999999999999885 46788877 999998 33444322 4444444 3567777554
No 36
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.94 E-value=1.1e-26 Score=176.57 Aligned_cols=141 Identities=26% Similarity=0.496 Sum_probs=121.3
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
.+||+++|++|||||||+++|+.+.+...+.++.+.++......+++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 94 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 94 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEE
Confidence 34999999999999999999888888888889999899888888999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCccchhh--hhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSIDEV--NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~~~--~~~~~~~~~~~~e~~~~~ 182 (188)
||+++..+++.+..|+..+.+..+++|+++ |||+|+.++.+..+ +++...+ ..++++|.++
T Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 158 (221)
T 3gj0_A 95 FDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN-LQYYDISAKS 158 (221)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHT-CEEEECBGGG
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcC-CEEEEEeCCC
Confidence 999999999999999999999888899888 99999944333222 4444444 3677777654
No 37
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.94 E-value=3.6e-26 Score=171.27 Aligned_cols=139 Identities=26% Similarity=0.450 Sum_probs=112.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 103 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVY 103 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEE
Confidence 3999999999999999999999999988889988777 566667777899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++.++++.+..|+..+.+.. .++|+++ +||+|+ .++.+... +++...+. .++++|.++
T Consensus 104 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~ 170 (201)
T 3oes_A 104 SVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGA-TFMESSARE 170 (201)
T ss_dssp ETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECCTTC
T ss_pred eCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCC-eEEEEeCCC
Confidence 9999999999999999998753 4678877 999998 34444432 45555554 677777654
No 38
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.94 E-value=1.2e-25 Score=168.54 Aligned_cols=142 Identities=28% Similarity=0.536 Sum_probs=119.6
Q ss_pred cceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEE
Q psy1417 40 FSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIV 119 (188)
Q Consensus 40 ~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vil 119 (188)
.++||+++|++|||||||+++|.++.+...+.++++.++. ..+.+++..+.+.+||++|++++...+..+++.+|++++
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 3459999999999999999999999998888899887775 446788888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHH-HHHHHHHHhhCCCceEEE-EEcCCCCC-------------ccchh---hhhhhcCCCCceEEeecc
Q psy1417 120 VYDVTSGETFANV-KRWLHEIENNCEVVNRIL-GLRLGLNQ-------------RSIDE---VNLCHRGSVDGSVESTSV 181 (188)
Q Consensus 120 v~d~~~~~s~~~~-~~~~~~i~~~~~~~pilv-gnK~Dl~~-------------~~i~~---~~~~~~~~~~~~~e~~~~ 181 (188)
|||+++.++++.+ ..|+..+....+++|+++ +||+|+.. +.+.. .+++...+...++++|.+
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 182 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCC
Confidence 9999999999999 689999988878899887 99999833 22322 245556666678888866
Q ss_pred c
Q psy1417 182 D 182 (188)
Q Consensus 182 ~ 182 (188)
+
T Consensus 183 ~ 183 (201)
T 2gco_A 183 T 183 (201)
T ss_dssp T
T ss_pred C
Confidence 5
No 39
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.94 E-value=3e-26 Score=172.80 Aligned_cols=140 Identities=28% Similarity=0.502 Sum_probs=117.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|..+.+...+.+|++..+ ...+.+++..+.+.+||++|++++...+..+++.+|++++||
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 88 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 88 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEE
Confidence 3999999999999999999999999888889988666 356678888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCC-CCccc--------h---hhhhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL-NQRSI--------D---EVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl-~~~~i--------~---~~~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++++.+. .|+..+....+++|++| |||+|+ .++.+ . ..+++...+...++++|.++
T Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (212)
T 2j0v_A 89 SLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT 163 (212)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence 999999999997 79999998888899887 999998 33321 2 22566666666788888765
No 40
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.94 E-value=5.2e-26 Score=164.51 Aligned_cols=140 Identities=29% Similarity=0.457 Sum_probs=117.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.++.+...+.+|.+..+. ..+.+++..+.+.+||++|++++...+..+++.+|++++||
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 82 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVY 82 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEE
Confidence 49999999999999999999999998888899886664 56677888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++++.+..|+..+.+. .+++|+++ +||+|+ .++.+..+ +++...+...++++|.++
T Consensus 83 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (167)
T 1c1y_A 83 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKS 150 (167)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCC
Confidence 999999999999999998874 35788877 999999 33444322 455554456678887654
No 41
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=6.7e-26 Score=168.65 Aligned_cols=140 Identities=33% Similarity=0.592 Sum_probs=119.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.++.+...+.++++.++....+.+++..+.+.+||++|++++...+..+++.+|++++||
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~ 103 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVY 103 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEE
Confidence 39999999999999999999999988888999999888888888888999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++..+++.+..|+..+.+.. +++|+++ +||+|+. .+.+..+ +++...+ ..++++|.++
T Consensus 104 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 169 (192)
T 2fg5_A 104 DITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIG-AIVVETSAKN 169 (192)
T ss_dssp ETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTT-CEEEECBTTT
T ss_pred eCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEeCCC
Confidence 9999999999999999998865 4688877 9999993 3444322 4555544 3577777654
No 42
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.94 E-value=8e-26 Score=166.70 Aligned_cols=140 Identities=38% Similarity=0.638 Sum_probs=119.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 90 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 90 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEE
Confidence 39999999999999999999999998888899998888888889998899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++.+++.+..|+..+.... +++|+++ +||+|+ .++.++.. +++...+ ..++++|+++
T Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 156 (186)
T 2bme_A 91 DITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENE-LMFLETSALT 156 (186)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEECCTTT
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEecCCC
Confidence 9999999999999999988754 6788887 999999 33444322 4444444 3567777654
No 43
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.94 E-value=2e-26 Score=172.32 Aligned_cols=140 Identities=22% Similarity=0.223 Sum_probs=112.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccc-cchhccccCCEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT-ITSTYYRGTHGVIVV 120 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-~~~~~~~~~~~vilv 120 (188)
+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+.. ++..+++.+|++++|
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv 103 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIV 103 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEE
Confidence 3999999999999999999975544334455666666677788899999999999999987764 777888999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
||++++++|+.+..|+..+.... .++|+++ |||+|+ .++.++.+ +++...+. .++|+|+++
T Consensus 104 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sa~~ 171 (195)
T 3cbq_A 104 FSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSC-KHIETSAAL 171 (195)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EEEEEBTTT
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCC-EEEEEcCCC
Confidence 99999999999999999998865 4688877 999999 34555432 45555553 688888765
No 44
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=7.9e-26 Score=170.24 Aligned_cols=143 Identities=26% Similarity=0.495 Sum_probs=113.0
Q ss_pred ccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEE
Q psy1417 39 IFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 118 (188)
Q Consensus 39 ~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vi 118 (188)
..++||+++|++|||||||+++|.++.+...+.++.+..+. ..+..++..+.+.+||++|++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 34459999999999999999999999988888888887665 34678888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhhCCCceEEE-EEcCCCCC-------------ccchh---hhhhhcCCCCceEEeec
Q psy1417 119 VVYDVTSGETFANV-KRWLHEIENNCEVVNRIL-GLRLGLNQ-------------RSIDE---VNLCHRGSVDGSVESTS 180 (188)
Q Consensus 119 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~pilv-gnK~Dl~~-------------~~i~~---~~~~~~~~~~~~~e~~~ 180 (188)
+|||+++.++++.+ ..|+..+....+++|+++ +||+|+.. +.+.. .+++...+...++++|.
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 181 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeC
Confidence 99999999999999 679999988878899887 99999832 22322 24555556667888876
Q ss_pred cc
Q psy1417 181 VD 182 (188)
Q Consensus 181 ~~ 182 (188)
++
T Consensus 182 ~~ 183 (207)
T 2fv8_A 182 KT 183 (207)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 45
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.94 E-value=5.2e-26 Score=165.13 Aligned_cols=140 Identities=22% Similarity=0.218 Sum_probs=103.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccc-cchhccccCCEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT-ITSTYYRGTHGVIVV 120 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-~~~~~~~~~~~vilv 120 (188)
+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+.. .+..+++.+|++++|
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v 82 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIV 82 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEE
Confidence 4999999999999999999997776666666666777778888999999999999999988875 677788999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhCC--CceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANVKRWLHEIENNCE--VVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~~~~--~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
||++++++++.+..|+..+.+..+ ++|+++ |||+|+. ++.+..+ +++...+. .++++|+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 150 (169)
T 3q85_A 83 FSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSC-KHIETSAAL 150 (169)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECBTTT
T ss_pred EECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCC-cEEEecCcc
Confidence 999999999999999999998764 788887 9999993 4444433 45555554 678887765
No 46
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.94 E-value=2.8e-26 Score=171.58 Aligned_cols=144 Identities=37% Similarity=0.668 Sum_probs=109.4
Q ss_pred CCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCC
Q psy1417 36 PTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTH 115 (188)
Q Consensus 36 ~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~ 115 (188)
....+ ||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|
T Consensus 25 ~~~~~--ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 25 SQKAY--KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp ---CE--EEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred cCCCe--EEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 34445 9999999999999999999999988888899998888888889999999999999999999988999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCCC-------Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 116 GVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGLN-------QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 116 ~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl~-------~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
++++|||+++..+++.+..|+..+.... +++|++| +||+|+. .+.+..+ +++...+. .++++|.++
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~ 180 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGA-LFCETSAKD 180 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCC-eEEEeeCCC
Confidence 9999999999999999999999998754 4688877 9999983 2333322 44444443 577777654
No 47
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.94 E-value=7.4e-26 Score=169.68 Aligned_cols=141 Identities=33% Similarity=0.584 Sum_probs=119.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+|+|++|||||||+++|.++.+...+.++++.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 88 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF 88 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEE
Confidence 39999999999999999999999988888999998888888888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-----CCceEEE-EEcCCCCCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-----EVVNRIL-GLRLGLNQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-----~~~pilv-gnK~Dl~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++.+++.+..|+..+.... .++|+++ +||+|+..+.+..+ +++.......++++|.++
T Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (207)
T 1vg8_A 89 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKE 158 (207)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTT
T ss_pred ECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCC
Confidence 9999999999999999988754 4678877 99999954443322 344434445678887654
No 48
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.94 E-value=1.6e-26 Score=174.94 Aligned_cols=140 Identities=37% Similarity=0.728 Sum_probs=117.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCe----------EEEEEEEeCCCcccccccchhcc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGE----------KVKLQIWDTAGQERFRTITSTYY 111 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~----------~~~l~l~D~~g~~~~~~~~~~~~ 111 (188)
+||+|+|++|||||||+++|.++.+...+.+|++.++....+.+++. .+.+.+||++|++.+...+..++
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~ 105 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFF 105 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHHh
Confidence 49999999999999999999999888888899998888777777766 78999999999999998899999
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 112 RGTHGVIVVYDVTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 112 ~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
+.+|++++|||+++..+++.+..|+..+.... .++|++| +||+|+ .++.+..+ +++...++ .+++++.++
T Consensus 106 ~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~ 182 (217)
T 2f7s_A 106 RDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGI-PYFETSAAT 182 (217)
T ss_dssp TTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-CEEEEBTTT
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCC-cEEEEECCC
Confidence 99999999999999999999999998887654 5788887 999999 33444322 45555554 578887665
No 49
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.94 E-value=1.3e-25 Score=164.20 Aligned_cols=140 Identities=33% Similarity=0.596 Sum_probs=119.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 94 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 94 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence 49999999999999999999999988888899998888888889999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++.+++.+..|+..+.... .++|+++ +||+|+ .++.+..+ +++...+ ..++++|+++
T Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 160 (179)
T 2y8e_A 95 DITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKA 160 (179)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHT-CEEEEEBTTT
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcC-CeEEEEeCCC
Confidence 9999999999999999988754 5688877 999998 34444322 3444444 3577777654
No 50
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=1.5e-25 Score=168.67 Aligned_cols=139 Identities=47% Similarity=0.839 Sum_probs=119.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+|+|++|||||||+++|.++.+...+.++++.++....+.+++..+.+.+||++|++.+...+..+++.+|++++|||
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 101 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYD 101 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEE
Confidence 99999999999999999999999888888999988888888899988999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhCC-CceEEE-EEcCCCCCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 123 VTSGETFANVKRWLHEIENNCE-VVNRIL-GLRLGLNQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~~~-~~pilv-gnK~Dl~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
+++..+++.+..|+..+....+ ++|+++ +||+|+..+.+..+ +++...++ .+++++.++
T Consensus 102 ~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 165 (213)
T 3cph_A 102 VTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGI-PFIESSAKN 165 (213)
T ss_dssp TTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTC-CEEECBTTT
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999999999988654 588877 99999954444322 45555454 577777554
No 51
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.94 E-value=2.3e-25 Score=165.77 Aligned_cols=139 Identities=30% Similarity=0.563 Sum_probs=116.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeE--------------------------------
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEK-------------------------------- 89 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~-------------------------------- 89 (188)
+||+|+|+.|||||||+++|+++.+...+.+|++.++....+.+++..
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYN 87 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccccc
Confidence 399999999999999999999999988899999988888888877755
Q ss_pred -----EEEEEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCccchh
Q psy1417 90 -----VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSIDE 163 (188)
Q Consensus 90 -----~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~~ 163 (188)
+.+.+||++|++.+......+++.+|++++|||++++.+++.+..|+..+....+ .|+++ +||+|+.++.+..
T Consensus 88 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~piilv~NK~D~~~~~~~~ 166 (208)
T 3clv_A 88 ENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN-YIIILVANKIDKNKFQVDI 166 (208)
T ss_dssp TTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-CEEEEEEECTTCC-CCSCH
T ss_pred CccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-CcEEEEEECCCcccccCCH
Confidence 8899999999999999999999999999999999999999999999999988665 78777 9999964444432
Q ss_pred h---hhhhcCCCCceEEeeccc
Q psy1417 164 V---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 164 ~---~~~~~~~~~~~~e~~~~~ 182 (188)
+ +++...+. .++++|.++
T Consensus 167 ~~~~~~~~~~~~-~~~~~Sa~~ 187 (208)
T 3clv_A 167 LEVQKYAQDNNL-LFIQTSAKT 187 (208)
T ss_dssp HHHHHHHHHTTC-EEEEECTTT
T ss_pred HHHHHHHHHcCC-cEEEEecCC
Confidence 2 45555554 677877654
No 52
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.94 E-value=1.2e-25 Score=164.76 Aligned_cols=135 Identities=19% Similarity=0.223 Sum_probs=108.3
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
++||+++|++|||||||+++|.++.+.+ +.+|++..+ ...+.+++..+.+.+||++|+++ ..+++++|++++|
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv 79 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV 79 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence 3499999999999999999999998876 788888555 57778899999999999999876 4578889999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhh----CCCceEEE-EEcCCC---CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANVKRWLHEIENN----CEVVNRIL-GLRLGL---NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~~----~~~~pilv-gnK~Dl---~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
||++++++|+.+..|+.++... .+++|+++ |||+|+ ..+.+..+ +++...+...++++|.++
T Consensus 80 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (178)
T 2iwr_A 80 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATY 152 (178)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTT
T ss_pred EECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccc
Confidence 9999999999999987666653 25688887 999998 23444433 344444445788888665
No 53
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.94 E-value=1.8e-26 Score=168.85 Aligned_cols=140 Identities=32% Similarity=0.531 Sum_probs=115.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCC-eEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNG-EKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
+||+++|++|||||||+++|.++.+...+.+|++.++....+.+++ ..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v 86 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLV 86 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEE
T ss_pred EEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEE
Confidence 4999999999999999999999988877889998888888888876 678999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhC---CCce-EEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANVKRWLHEIENNC---EVVN-RIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~~~---~~~p-ilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
||++++++++.+..|+..+.... ...| +++ +||+|+. ++.+..+ +++...+. .++++|.++
T Consensus 87 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 156 (178)
T 2hxs_A 87 YDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGF-SSHFVSAKT 156 (178)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-EEEEECTTT
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCC-cEEEEeCCC
Confidence 99999999999999999988743 2344 555 9999993 3444332 45555453 567877654
No 54
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.94 E-value=5.2e-26 Score=166.67 Aligned_cols=141 Identities=31% Similarity=0.582 Sum_probs=106.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeC-CeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVN-GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
+||+++|++|||||||+++|.++.+...+.++++.++....+.++ +..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 88 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLV 88 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEE
Confidence 399999999999999999999999888889999888888888777 5668899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhC-----CCceEEE-EEcCCCC--Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 121 YDVTSGETFANVKRWLHEIENNC-----EVVNRIL-GLRLGLN--QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~~~-----~~~pilv-gnK~Dl~--~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
||+++..+++.+..|+..+.... .++|+++ +||+|+. .+.+..+ +++.......++++|+++
T Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (182)
T 1ky3_A 89 YDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKN 161 (182)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTT
T ss_pred EECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCC
Confidence 99999999999999999988743 5688877 9999983 2333322 444434556678887665
No 55
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.94 E-value=1.3e-25 Score=166.04 Aligned_cols=140 Identities=33% Similarity=0.679 Sum_probs=117.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeE-EEEEEeCCe---------EEEEEEEeCCCcccccccchhcc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFK-IRTIDVNGE---------KVKLQIWDTAGQERFRTITSTYY 111 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~---------~~~l~l~D~~g~~~~~~~~~~~~ 111 (188)
+||+++|++|||||||+++|.++.+...+.+|++.++. ...+..++. .+.+.+||++|++.+...+..++
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 91 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFF 91 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHH
Confidence 49999999999999999999999988888899998887 667777765 78999999999999999999999
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 112 RGTHGVIVVYDVTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 112 ~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
+.+|++++|||+++..+++.+..|+..+.... +++|+++ +||+|+. ++.+..+ +++...+. .+++++.++
T Consensus 92 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 168 (195)
T 3bc1_A 92 RDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGI-PYFETSAAN 168 (195)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC-CEEEEECCC
Confidence 99999999999999999999999999998866 5788877 9999993 3444322 45555454 567777654
No 56
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.94 E-value=1.9e-25 Score=163.53 Aligned_cols=138 Identities=28% Similarity=0.443 Sum_probs=115.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|+.|||||||+++|.++.+...+.+|.+..+. ..+.+++..+.+.+||++|++++...+..+++.+|++++|||
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 89 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFA 89 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEe
Confidence 9999999999999999999999988888899887766 667788888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 123 VTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
+++..+++.+..|+..+.+. ..++|+++ +||+|+ ..+.+..+ +++...+. .++++|+++
T Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~ 155 (181)
T 2fn4_A 90 INDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHV-AYFEASAKL 155 (181)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECBTTT
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC-eEEEecCCC
Confidence 99999999999999998553 35688877 999998 33444322 44444443 677777654
No 57
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.94 E-value=1.7e-25 Score=164.59 Aligned_cols=140 Identities=29% Similarity=0.532 Sum_probs=118.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 84 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICF 84 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEE
Confidence 4999999999999999999999998888888887655 456678899999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCC-CC------------ccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL-NQ------------RSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl-~~------------~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++.+++.+. .|+..+....++.|+++ +||+|+ +. +.+..+ +++...+...++++|.++
T Consensus 85 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (186)
T 1mh1_A 85 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 163 (186)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred ECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCC
Confidence 999999999997 79999998877889887 999998 32 233322 455566666788887665
No 58
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.1e-25 Score=171.39 Aligned_cols=140 Identities=39% Similarity=0.697 Sum_probs=111.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+|+|++|||||||+++|.++.+...+.++++.++....+.+++..+.+.+||++|++++...+..+++.+|++++||
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~ 93 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVY 93 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEE
Confidence 39999999999999999999999998888899999998888889998899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++..+++.+..|+..+.... +++|++| +||+|+ ..+.+..+ +++...+ ..+++++.++
T Consensus 94 D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 159 (223)
T 3cpj_B 94 DISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQ-LLFTETSALN 159 (223)
T ss_dssp C-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTT-CEEEECCCC-
T ss_pred eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEeCCC
Confidence 9999999999999999998864 4688877 999998 33444322 4554444 3567776554
No 59
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.94 E-value=1e-25 Score=170.61 Aligned_cols=140 Identities=29% Similarity=0.540 Sum_probs=98.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 113 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCF 113 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEEEEE
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEE
Confidence 4999999999999999999999888888888887555 456778889999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCCC-Cc------------cchh---hhhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGLN-QR------------SIDE---VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl~-~~------------~i~~---~~~~~~~~~~~~~e~~~~~ 182 (188)
|+++..+|+.+. .|+..+....+++|+++ |||+|+. ++ .++. .+++...+...++++|.++
T Consensus 114 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~ 192 (214)
T 2j1l_A 114 DVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARL 192 (214)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTT
T ss_pred ECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCC
Confidence 999999999997 79999998888899887 9999983 22 2322 2566666666888988765
No 60
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.94 E-value=9.4e-26 Score=169.07 Aligned_cols=140 Identities=39% Similarity=0.656 Sum_probs=108.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+|+|++|||||||+++|.++.+...+.++++.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 105 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 105 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEE
Confidence 49999999999999999999999888888899998888888889998999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++..+++.+..|+..+.... +++|+++ +||+|+ .++.++.. +++...+ ..++++|.++
T Consensus 106 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~ 171 (200)
T 2o52_A 106 DITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENE-LMFLETSALT 171 (200)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEEECTTT
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcC-CEEEEEeCCC
Confidence 9999999999999999998754 5788887 999998 33444322 4444444 4577877654
No 61
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.94 E-value=1.6e-25 Score=168.34 Aligned_cols=140 Identities=28% Similarity=0.540 Sum_probs=117.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 109 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICF 109 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred EEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEE
Confidence 4999999999999999999999999888888887444 466778888999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCC-CCcc------------chh---hhhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL-NQRS------------IDE---VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl-~~~~------------i~~---~~~~~~~~~~~~~e~~~~~ 182 (188)
|++++.+++.+. .|+..+....+++|+++ +||+|+ .++. +.. .+++...+...++++|+++
T Consensus 110 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~ 188 (204)
T 4gzl_A 110 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 188 (204)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCC
Confidence 999999999997 79999999888899888 999998 3321 222 2566666777788888765
No 62
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.93 E-value=1.9e-26 Score=169.37 Aligned_cols=139 Identities=30% Similarity=0.535 Sum_probs=102.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|++|||||||++++..+.+...+.+|++..+. ..+.+++..+.+.+||++|++++...+..+++.+|++++|||
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 88 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 88 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEE
Confidence 9999999999999999999999988888888875553 334556777889999999999999999999999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCC-CCccc----------h---hhhhhhcCCCCceEEeeccc
Q psy1417 123 VTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL-NQRSI----------D---EVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 123 ~~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl-~~~~i----------~---~~~~~~~~~~~~~~e~~~~~ 182 (188)
++++.+++.+. .|+..+....+++|+++ +||+|+ .++.+ . ..+++...+...++++|.++
T Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (182)
T 3bwd_D 89 LISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKS 164 (182)
T ss_dssp TTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence 99999999997 79999998877889887 999998 33321 2 12566666666788888765
No 63
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.93 E-value=3.6e-26 Score=169.66 Aligned_cols=141 Identities=18% Similarity=0.205 Sum_probs=112.0
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCCCCCC-----------ccceeeeeeEEEEE-EeCCeEEEEEEEeCCCcccccccch
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGS-----------YITTIGVDFKIRTI-DVNGEKVKLQIWDTAGQERFRTITS 108 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~~~~~-----------~~~t~~~~~~~~~~-~~~~~~~~l~l~D~~g~~~~~~~~~ 108 (188)
.+||+++|++|||||||++.+ .+.+... +.+|++.++....+ .+++..+.+.+||++|++.+...+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 92 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWI-YSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRK 92 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHH-HHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHH-HhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHH
Confidence 349999999999999999655 4555554 34577777665555 6678889999999999999999999
Q ss_pred hccccCCEEEEEEeCC------ChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCcc-chh-hhhhhcCCCCceEEee
Q psy1417 109 TYYRGTHGVIVVYDVT------SGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRS-IDE-VNLCHRGSVDGSVEST 179 (188)
Q Consensus 109 ~~~~~~~~vilv~d~~------~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~-i~~-~~~~~~~~~~~~~e~~ 179 (188)
.+++.+|++++|||++ +.++|+.+..|+.++....+++|+++ |||+|+.... .++ .+++...+...++++|
T Consensus 93 ~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 172 (198)
T 3t1o_A 93 LILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEAV 172 (198)
T ss_dssp HHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEECB
T ss_pred HHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEEEe
Confidence 9999999999999999 66788888899998866667889888 9999994432 222 2566666665788888
Q ss_pred ccc
Q psy1417 180 SVD 182 (188)
Q Consensus 180 ~~~ 182 (188)
.++
T Consensus 173 a~~ 175 (198)
T 3t1o_A 173 ATE 175 (198)
T ss_dssp GGG
T ss_pred cCC
Confidence 765
No 64
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.93 E-value=2.7e-25 Score=160.54 Aligned_cols=139 Identities=29% Similarity=0.483 Sum_probs=111.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++.++.+...+.++.+..+. ..+.+++..+.+.+||++|++++...+..+++.+|++++||
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 83 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVF 83 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEE
Confidence 49999999999999999999999988888888876654 55678888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCC--CceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNCE--VVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~~--~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++.++++.+..|+..+.+... ++|+++ +||+|+ .++.+..+ +++...+. .+++++.++
T Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 150 (168)
T 1u8z_A 84 SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNV-NYVETSAKT 150 (168)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCC-eEEEeCCCC
Confidence 99999999999999999988554 688877 999998 33444322 34444443 567777554
No 65
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.93 E-value=1.2e-26 Score=173.62 Aligned_cols=144 Identities=53% Similarity=0.908 Sum_probs=115.4
Q ss_pred CCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCC
Q psy1417 36 PTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTH 115 (188)
Q Consensus 36 ~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~ 115 (188)
..+.+ ||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|
T Consensus 30 ~~~~~--ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 107 (199)
T 3l0i_B 30 YDYLF--KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 107 (199)
T ss_dssp CSEEE--EEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCS
T ss_pred cCcce--EEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCC
Confidence 34455 9999999999999999999998888888899998898889999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC-CCccch---hhhhhhcCCCCceEEeeccc
Q psy1417 116 GVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL-NQRSID---EVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 116 ~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl-~~~~i~---~~~~~~~~~~~~~~e~~~~~ 182 (188)
++++|||+++..+++.+..|+..+.... .++|+++ +||+|+ ..+.+. ..+++...++ .++++|.++
T Consensus 108 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~vSA~~ 179 (199)
T 3l0i_B 108 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI-PFLETSAKN 179 (199)
T ss_dssp EEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTC-CBCCCCC--
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCC-eEEEEECCC
Confidence 9999999999999999999999998755 4689888 999998 334333 2255555554 466666543
No 66
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.93 E-value=4.7e-25 Score=159.13 Aligned_cols=139 Identities=29% Similarity=0.445 Sum_probs=115.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 82 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVY 82 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEE
Confidence 4999999999999999999999998888888887544 567778898999999999999999988999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++..+++.+..|+..+.+.. .+.|+++ +||+|+ .++.+..+ +++...+. .++++|..+
T Consensus 83 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 149 (167)
T 1kao_A 83 SLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGC-PFMETSAKS 149 (167)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTS-CEEEECTTC
T ss_pred eCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCC-CEEEecCCC
Confidence 9999999999999999988754 4688877 999998 34444322 44544443 577777654
No 67
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.93 E-value=6e-26 Score=170.00 Aligned_cols=141 Identities=23% Similarity=0.388 Sum_probs=86.2
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhC--CCCCCccceeeeeeEEEEEEeCCe--EEEEEEEeCCCcccccccchhccccCCE
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDN--TFSGSYITTIGVDFKIRTIDVNGE--KVKLQIWDTAGQERFRTITSTYYRGTHG 116 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~--~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 116 (188)
.+||+++|++|||||||+++|.++ .+...+.+|++.++....+.+++. .+.+.+||++|++.+...+..+++.+|+
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 99 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYY 99 (208)
T ss_dssp EEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcE
Confidence 349999999999999999999988 788888899988888888888877 8999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhCC----CceEEE-EEcCCCC--Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 117 VIVVYDVTSGETFANVKRWLHEIENNCE----VVNRIL-GLRLGLN--QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 117 vilv~d~~~~~s~~~~~~~~~~i~~~~~----~~pilv-gnK~Dl~--~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
+++|||++++.+++.+..|+..+....+ ++|+++ +||+|+. ++.+..+ +++...+ ..++++|.++
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 174 (208)
T 2yc2_C 100 AILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNT-LDFFDVSANP 174 (208)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTT-CEEEECCC--
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcC-CEEEEeccCC
Confidence 9999999999999999999999998764 788887 9999994 4555432 5555555 3667776654
No 68
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.93 E-value=3.4e-25 Score=163.00 Aligned_cols=139 Identities=29% Similarity=0.483 Sum_probs=115.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 97 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVF 97 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEE-EEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEE
Confidence 49999999999999999999999988888888876653 55678888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCC--CceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNCE--VVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~~--~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++.++++.+..|+..+.+..+ ++|+++ +||+|+ ..+.+..+ +++...+. .+++++.++
T Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 164 (187)
T 2a9k_A 98 SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV-NYVETSAKT 164 (187)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCC-eEEEeCCCC
Confidence 99999999999999999988654 688877 999998 33444322 45555443 567777554
No 69
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.93 E-value=6.4e-25 Score=164.30 Aligned_cols=139 Identities=29% Similarity=0.483 Sum_probs=116.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+|+|++|||||||+++|.++.+...+.+|.+..+. ..+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 93 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVF 93 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE-EEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEE
Confidence 39999999999999999999999988888888886653 56678888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCC--CceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNCE--VVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~~--~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++.++++.+..|+..+..... ++|+++ +||+|+ ..+.+..+ +++...+. .++++|+.+
T Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (206)
T 2bov_A 94 SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV-NYVETSAKT 160 (206)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEEECTTT
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCC-eEEEEeCCC
Confidence 99999999999999999998654 688887 999999 33444322 44544444 577877654
No 70
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.93 E-value=6.1e-25 Score=159.01 Aligned_cols=138 Identities=22% Similarity=0.240 Sum_probs=91.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.+..+. ...++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 49999999999999999999865543 3456666555 466778999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++++.+..|+..+.+. .+++|+++ |||+|+ +++.+..+ +++...+ ..++++|+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 147 (166)
T 3q72_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFD-CKFIETSAAL 147 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTT-CEEEECBGGG
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhC-CcEEEeccCC
Confidence 999999999999999999875 35688887 999998 44544433 4444444 4678887665
No 71
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.93 E-value=7.9e-25 Score=159.54 Aligned_cols=139 Identities=22% Similarity=0.259 Sum_probs=103.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccc--ccccchhccccCCEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER--FRTITSTYYRGTHGVIV 119 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~--~~~~~~~~~~~~~~vil 119 (188)
+||+++|++|||||||+++|.++.+... .++.+.++....+.+++..+.+.+||++|++. +......+++.+|++++
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~ 83 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVI 83 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEE
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEE
Confidence 4999999999999999999998876554 34567777777888899999999999999987 56667788899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 120 VYDVTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 120 v~d~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|||++++.+|+.+..|+..+.+. .+++|+++ |||+|+ +.+.+..+ +++...+ ..++++|.++
T Consensus 84 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 152 (175)
T 2nzj_A 84 VYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFD-CKFIETSATL 152 (175)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHT-SEEEECBTTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcC-CeEEEEecCC
Confidence 99999999999999999998875 34688877 999999 44554433 3444434 3677877654
No 72
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.93 E-value=1.6e-24 Score=159.76 Aligned_cols=139 Identities=27% Similarity=0.446 Sum_probs=112.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.++.+...+.++.+. .....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 83 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 83 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCE-EEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchh-eEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEE
Confidence 49999999999999999999999988888888764 34466778899999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCCCCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGLNQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++..+++.+..|+..+.... +++|+++ +||+|+..+.+..+ +++...+. .++++|..+
T Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 149 (189)
T 4dsu_A 84 AINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGI-PFIETSAKT 149 (189)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 9999999999999999998844 4688877 99999955443322 45555443 567777654
No 73
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.93 E-value=1.4e-24 Score=160.79 Aligned_cols=139 Identities=27% Similarity=0.467 Sum_probs=104.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|+.|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 100 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEE
Confidence 4999999999999999999999988888888877555 356778888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCCCCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGLNQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|+++..+++.+..|+..+.... .++|+++ +||+|+..+.+..+ +++...++ .+++++..+
T Consensus 101 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 166 (190)
T 3con_A 101 AINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGI-PFIETSAKT 166 (190)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred ECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 9999999999999999988754 3688877 99999954443322 45555554 577776554
No 74
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.93 E-value=1.5e-24 Score=156.20 Aligned_cols=139 Identities=25% Similarity=0.448 Sum_probs=114.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..+++.+|++++||
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 82 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 82 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEE
Confidence 4999999999999999999999988888888877554 456678888899999999999999988888999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCC--CceEEE-EEcCCCCCccchh---hhhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNCE--VVNRIL-GLRLGLNQRSIDE---VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~~--~~pilv-gnK~Dl~~~~i~~---~~~~~~~~~~~~~e~~~~~ 182 (188)
|+++..+++.+..|+..+....+ ++|+++ +||+|+..+.+.. .+++...+. .+++++..+
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (166)
T 2ce2_X 83 AINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGI-PYIETSAKT 148 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTC-CEEEECTTT
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCC-eEEEecCCC
Confidence 99999999999999999888543 688877 9999985443332 245555554 577777554
No 75
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.93 E-value=1.1e-24 Score=162.22 Aligned_cols=112 Identities=20% Similarity=0.323 Sum_probs=94.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCC-CccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSG-SYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 120 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv 120 (188)
.||+|+|++|||||||+++|.++.+.. .+.+|++..+. .+.. ..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 93 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFEK--GRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFV 93 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEEE--TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEEe--CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEE
Confidence 399999999999999999999999888 78899884443 3333 447899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhC---------CCceEEE-EEcCCCC
Q psy1417 121 YDVTSGETFANVKRWLHEIENNC---------EVVNRIL-GLRLGLN 157 (188)
Q Consensus 121 ~d~~~~~s~~~~~~~~~~i~~~~---------~~~pilv-gnK~Dl~ 157 (188)
||+++.++|+.+..|+..+.+.. +++|++| +||+|+.
T Consensus 94 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 140 (199)
T 4bas_A 94 VDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAA 140 (199)
T ss_dssp EETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTST
T ss_pred EECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCC
Confidence 99999999999999998887642 2688887 9999994
No 76
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=7.8e-25 Score=158.85 Aligned_cols=139 Identities=27% Similarity=0.387 Sum_probs=112.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.++.+...+.++++..+. ..+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 82 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 82 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEE
Confidence 49999999999999999999999888888888886654 45667888899999999999999988889999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC---CCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC---EVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~---~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++++.+..|+..+.+.. ++.|+++ +||+|+ +.+.+... +++...+ ..++++|+.+
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 150 (172)
T 2erx_A 83 SITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWK-CAFMETSAKL 150 (172)
T ss_dssp ETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-CEEEECBTTT
T ss_pred ECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhC-CeEEEecCCC
Confidence 9999999999999988887743 5688877 999998 34444322 3444433 3567777654
No 77
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.92 E-value=1.1e-24 Score=161.50 Aligned_cols=113 Identities=23% Similarity=0.459 Sum_probs=98.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+|+|++|||||||+++|.++.+...+.+|++.++.. +... .+.+.+||++|++++...+..+++.+|++++||
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 98 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV 98 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEEEEE
Confidence 499999999999999999999999888888999876653 3333 477999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCCC
Q psy1417 122 DVTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~~ 158 (188)
|+++.++++.+..|+..+.+. ..++|+++ +||+|+..
T Consensus 99 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 99 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCcc
Confidence 999999999999999888764 36788877 99999943
No 78
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=9.4e-25 Score=162.80 Aligned_cols=138 Identities=27% Similarity=0.376 Sum_probs=113.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||++|++. ...+..+++.+|++++||
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~ 106 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVY 106 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEE
Confidence 3999999999999999999999999888889988666 35667888899999999999988 677788899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++++++.+..|+..+... .+++|+++ +||+|+. ++.+..+ +++...+ ..++++|.++
T Consensus 107 D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 173 (196)
T 2atv_A 107 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELA-CAFYECSACT 173 (196)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-SEEEECCTTT
T ss_pred ECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhC-CeEEEECCCc
Confidence 999999999999999998874 35788877 9999993 3444322 4554444 3577777654
No 79
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.92 E-value=1.3e-25 Score=166.21 Aligned_cols=141 Identities=23% Similarity=0.394 Sum_probs=103.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC--CCCCCccceeeeeeEEEEEEe---CCeEEEEEEEeCCCcccccccchhccccCCE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDN--TFSGSYITTIGVDFKIRTIDV---NGEKVKLQIWDTAGQERFRTITSTYYRGTHG 116 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~--~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 116 (188)
+||+++|++|||||||+++|.+. .+...+.+|++.++....+.+ ++..+.+.+||++|++++...++.+++++++
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRAL 82 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcE
Confidence 49999999999999999999874 456667889988877665543 3456789999999999998888999999999
Q ss_pred EEEEEeCCCh-hhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC-Cccch------hhhhhhcCCCC---ceEEeeccc
Q psy1417 117 VIVVYDVTSG-ETFANVKRWLHEIENNCEVVNRIL-GLRLGLN-QRSID------EVNLCHRGSVD---GSVESTSVD 182 (188)
Q Consensus 117 vilv~d~~~~-~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~-~~~i~------~~~~~~~~~~~---~~~e~~~~~ 182 (188)
+++|||+++. .+++.+..|+..+....+++|+++ |||+|+. ++.+. ..+++...++. .++++|.++
T Consensus 83 ~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 83 YLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 9999999997 589999999999988777889888 9999984 33332 12455555554 367777654
No 80
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.8e-24 Score=164.00 Aligned_cols=139 Identities=19% Similarity=0.225 Sum_probs=107.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCC--CCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccc-ccccchhccccCCEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNT--FSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER-FRTITSTYYRGTHGVI 118 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-~~~~~~~~~~~~~~vi 118 (188)
+||+|+|++|||||||+++|.+.. +...+ ++++.++..+.+.+++..+.+.+||++|.+. +..+...+++.+++++
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~i 116 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYL 116 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEE
Confidence 499999999999999999998543 34433 4567777778888999999999999999876 4556677888999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 119 VVYDVTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 119 lv~d~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
+|||++++++|+.+..|+..+.+. .+++|+++ |||+|+. ++.+..+ .++...+ ..++|+|.++
T Consensus 117 lVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~-~~~~e~SAk~ 186 (211)
T 2g3y_A 117 IVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFD-CKFIETSAAV 186 (211)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEECBTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcC-CEEEEEeCCC
Confidence 999999999999999999888763 35688877 9999993 4555433 3334433 3678887654
No 81
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.92 E-value=1e-24 Score=160.62 Aligned_cols=117 Identities=26% Similarity=0.380 Sum_probs=97.8
Q ss_pred CCCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccC
Q psy1417 35 GPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGT 114 (188)
Q Consensus 35 ~~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~ 114 (188)
.....+ ||+++|++|||||||+++|.++.+ ..+.+|++..+ ..+.+++ +.+.+||++|++++...+..+++.+
T Consensus 17 ~~~~~~--~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (181)
T 2h17_A 17 RGSQEH--KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNT 89 (181)
T ss_dssp ----CE--EEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTC
T ss_pred CCCcee--EEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccC
Confidence 334445 999999999999999999998887 56678887554 4455555 7899999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCCC
Q psy1417 115 HGVIVVYDVTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 115 ~~vilv~d~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~~ 158 (188)
|++++|||+++.++++.+..|+..+.+. ..++|+++ +||+|+..
T Consensus 90 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 90 EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp CEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 9999999999999999999999888875 46788887 99999943
No 82
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.92 E-value=6.7e-24 Score=157.81 Aligned_cols=111 Identities=20% Similarity=0.345 Sum_probs=97.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|++|||||||++++.++.+. .+.+|++.. ...+.+++ +.+.+||++|++.+...+..+++.+|++++|||
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 99 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD 99 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEE
Confidence 9999999999999999999988864 567888764 35666676 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCCC
Q psy1417 123 VTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~~ 158 (188)
++++++|+.+..|+..+.+. ..++|+++ |||+|+.+
T Consensus 100 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 100 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred CCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 99999999999999998763 35688887 99999954
No 83
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.92 E-value=3.2e-24 Score=159.08 Aligned_cols=115 Identities=20% Similarity=0.366 Sum_probs=97.9
Q ss_pred CcccceeEEEEeCCCCCHHHHHHHHHhCC-CCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCC
Q psy1417 37 THIFSQKSSFLQLVGVGKSSLLIRFSDNT-FSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTH 115 (188)
Q Consensus 37 ~~~~~~ki~vvG~~~~GKssLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~ 115 (188)
.+.+ ||+++|++|||||||+++|.++. +...+.+|++. ....+.+++ +.+.+||++|++.+...+..+++.+|
T Consensus 19 ~~~~--ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (190)
T 2h57_A 19 SKEV--HVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQ 92 (190)
T ss_dssp --CE--EEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred CCcc--EEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCC
Confidence 3445 99999999999999999999877 66778888873 445556665 67999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhC----CCceEEE-EEcCCCC
Q psy1417 116 GVIVVYDVTSGETFANVKRWLHEIENNC----EVVNRIL-GLRLGLN 157 (188)
Q Consensus 116 ~vilv~d~~~~~s~~~~~~~~~~i~~~~----~~~pilv-gnK~Dl~ 157 (188)
++++|||+++.++++.+..|+..+.+.. .++|+++ +||+|+.
T Consensus 93 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 139 (190)
T 2h57_A 93 AIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTST
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcc
Confidence 9999999999999999999999888753 4688877 9999994
No 84
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=2.7e-24 Score=160.02 Aligned_cols=138 Identities=27% Similarity=0.388 Sum_probs=113.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|++|||||||+++|.++.+...+.++++..+. ..+..++..+.+.+||++|++.+...+..+++.+|++++|||
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 88 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFS 88 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEE
Confidence 9999999999999999999999988888888886554 456678888999999999999999888999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhC---CCceEEE-EEcCCCCCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 123 VTSGETFANVKRWLHEIENNC---EVVNRIL-GLRLGLNQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~~---~~~pilv-gnK~Dl~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
+++..+++.+..|+..+.... +++|+++ +||+|+..+.+..+ +++...+. .++++|+.+
T Consensus 89 ~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 154 (199)
T 2gf0_A 89 VTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKC-AFMETSAKM 154 (199)
T ss_dssp TTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTC-EEEECBTTT
T ss_pred CcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCC-eEEEEecCC
Confidence 999999999998888777632 4678877 99999955444332 34444443 567777654
No 85
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.92 E-value=1e-23 Score=155.60 Aligned_cols=110 Identities=25% Similarity=0.475 Sum_probs=96.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|++|||||||++++.++. ...+.||++.. ...+.+++ +.+.+||++|++++...+..+++.+|++++|||
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 94 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEE
Confidence 99999999999999999999887 67788888844 34555554 779999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCC
Q psy1417 123 VTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLN 157 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~ 157 (188)
++++++++.+..|+..+.+. .+++|+++ +||+|+.
T Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (186)
T 1ksh_A 95 SADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132 (186)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred CcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCC
Confidence 99999999999999888764 35788877 9999994
No 86
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.92 E-value=4.1e-24 Score=160.01 Aligned_cols=111 Identities=20% Similarity=0.362 Sum_probs=89.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|++|||||||+++|.++.+. .+.+|++... ..+.+++ +.+.+||++|++.+...+..+++.+|++++|||
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D 101 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVD 101 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEE
Confidence 9999999999999999999987764 5678877653 4556666 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCCC
Q psy1417 123 VTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~~ 158 (188)
++++++|+.+..|+..+.+. ..++|+++ |||+|+.+
T Consensus 102 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 102 CADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 99999999999999988764 35688887 99999954
No 87
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.91 E-value=8.2e-24 Score=152.73 Aligned_cols=112 Identities=21% Similarity=0.418 Sum_probs=94.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++.++.+.. +.||++.. ...+..+ .+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 389999999999999999999888764 57787733 3344444 377999999999999988889999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCCC
Q psy1417 122 DVTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~~ 158 (188)
|++++++|+.+..|+..+... .++.|+++ +||+|+.+
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence 999999999999999888763 35788887 99999943
No 88
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=5.1e-24 Score=157.60 Aligned_cols=111 Identities=28% Similarity=0.416 Sum_probs=93.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|++|||||||+++|.++.+. .+.+|++... ..+.+++ +.+.+||++|++++...+..+++.+|++++|||
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 92 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 92 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 9999999999999999999988876 6778887443 4555555 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCCC
Q psy1417 123 VTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~~ 158 (188)
+++.++++.+..|+..+.+. ..+.|+++ +||+|+..
T Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 93 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp TTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred CCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 99999999999999999875 36788887 99999943
No 89
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.91 E-value=3e-24 Score=162.47 Aligned_cols=141 Identities=26% Similarity=0.446 Sum_probs=113.4
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeC-CeEEEEEEEeCCCcccccccchhccccCCEEEE
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVN-GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIV 119 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vil 119 (188)
.+||+++|++|||||||+++|+++.+...+.++.+..+........ +..+.+.+||++|++.+...+..+++.+|++++
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAIL 90 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEE
Confidence 3499999999999999999999988888888888877766665554 444889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhCC-CceEEE-EEcCCCC-Cccchhh---hhhhcCCCCceEEeeccc
Q psy1417 120 VYDVTSGETFANVKRWLHEIENNCE-VVNRIL-GLRLGLN-QRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 120 v~d~~~~~s~~~~~~~~~~i~~~~~-~~pilv-gnK~Dl~-~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|||+++..+++.+..|+..+....+ +.|+++ +||+|+. .+.+... +++...+ ..++++|.++
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 158 (218)
T 4djt_A 91 FFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKN-YEYFEISAKT 158 (218)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCC-CEEEEEBTTT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-CcEEEEecCC
Confidence 9999999999999999999988554 478877 9999994 3344433 3333333 4578887654
No 90
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.91 E-value=3e-23 Score=150.63 Aligned_cols=110 Identities=25% Similarity=0.382 Sum_probs=94.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|++|||||||+++|.++.+. .+.+|++... ..+.+++ +.+.+||++|++.+...+..+++.+|++++|||
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 83 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNV--ETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVD 83 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE--EEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccce--EEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEEEEE
Confidence 9999999999999999999988875 4677877443 4555554 779999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCCC
Q psy1417 123 VTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGLN 157 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl~ 157 (188)
+++.++++.+..|+..+.+.. .++|+++ +||+|+.
T Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (171)
T 1upt_A 84 SCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121 (171)
T ss_dssp TTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred CCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCc
Confidence 999999999999988887642 6788887 9999994
No 91
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.91 E-value=3.4e-23 Score=154.40 Aligned_cols=139 Identities=19% Similarity=0.254 Sum_probs=104.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC--CCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccc-ccccchhccccCCEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDN--TFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER-FRTITSTYYRGTHGVI 118 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-~~~~~~~~~~~~~~vi 118 (188)
+||+++|++|||||||+++|.+. .+...+ ++++.++....+.+++..+.+.+||++|.+. +..+...+++.+++++
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i 85 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYL 85 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEE
Confidence 49999999999999999999853 334443 4466677777888899999999999999766 4556777888999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCC-CCccchhh---hhhhcCCCCceEEeeccc
Q psy1417 119 VVYDVTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGL-NQRSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 119 lv~d~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl-~~~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
+|||+++.++|+.+..|+..+.+. .+++|+++ |||+|+ .++.+..+ .++...+ ..++|+|.++
T Consensus 86 ~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~-~~~~e~SA~~ 155 (192)
T 2cjw_A 86 IVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFD-XKFIETSAAV 155 (192)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECBTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhC-CceEEecccc
Confidence 999999999999999999888764 35688877 999999 34444432 2333333 3678887654
No 92
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.91 E-value=6.2e-24 Score=158.56 Aligned_cols=120 Identities=21% Similarity=0.182 Sum_probs=90.5
Q ss_pred CCCCCCcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEE--EEEeC-CeEEEEEEEeCCCcccccccc-
Q psy1417 32 GKNGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIR--TIDVN-GEKVKLQIWDTAGQERFRTIT- 107 (188)
Q Consensus 32 ~~~~~~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~--~~~~~-~~~~~l~l~D~~g~~~~~~~~- 107 (188)
....+.+.+ ||+++|+.|||||||++++.+ .+... ++.+.++... ...+. +..+.+.+||++|+++|....
T Consensus 13 ~~~~~~~~~--ki~~vG~~~vGKTsLi~~l~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 87 (196)
T 3llu_A 13 NLYFQGSKP--RILLMGLRRSGKSSIQKVVFH-KMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTF 87 (196)
T ss_dssp -------CC--EEEEEESTTSSHHHHHHHHHS-CCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTC
T ss_pred CCcccCcce--EEEEECCCCCCHHHHHHHHHh-cCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhh
Confidence 334444556 999999999999999998765 44433 4444444322 22332 566889999999999987666
Q ss_pred --hhccccCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 108 --STYYRGTHGVIVVYDVTSG--ETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 108 --~~~~~~~~~vilv~d~~~~--~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
..+++++|++++|||+++. ++++.+..|+..+.+..+++|++| |||+|+
T Consensus 88 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl 141 (196)
T 3llu_A 88 DYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDG 141 (196)
T ss_dssp CHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGG
T ss_pred hcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEecccc
Confidence 7899999999999999997 778888889888877788899888 999997
No 93
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.91 E-value=1.7e-23 Score=155.93 Aligned_cols=111 Identities=20% Similarity=0.413 Sum_probs=89.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|++|||||||+++|..+.+. .+.||++. ....+..++ +.+.+||++|++++...+..+++.+|++++|||
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D 105 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF--NVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 105 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTE--EEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCce--eEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 9999999999999999999988765 45677773 334455554 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCCC
Q psy1417 123 VTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~~ 158 (188)
++++++++.+..|+..+.+. .+++|+++ +||+|+.+
T Consensus 106 ~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 106 SNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCC
Confidence 99999999999999988763 35688887 99999943
No 94
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.91 E-value=4.2e-23 Score=165.13 Aligned_cols=140 Identities=27% Similarity=0.517 Sum_probs=119.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++..+.+...+.+|++..+ ...+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 234 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICF 234 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEE
T ss_pred eEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEE
Confidence 3999999999999999999999999888888887655 456778899999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCC-CC------------ccchhh---hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGL-NQ------------RSIDEV---NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl-~~------------~~i~~~---~~~~~~~~~~~~e~~~~~ 182 (188)
|++++.+++.+. .|+..+....+++|+++ +||+|+ .+ +.+... +++...+...++++|.++
T Consensus 235 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 313 (332)
T 2wkq_A 235 SLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 313 (332)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred eCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCC
Confidence 999999999997 79999998877899887 999998 32 233322 466666666788888765
No 95
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.91 E-value=2.4e-23 Score=153.64 Aligned_cols=110 Identities=25% Similarity=0.441 Sum_probs=93.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|++|||||||++++.++.+ ..+.||+|.. ...+.+++ +.+.+||++|++.+...+..+++.+|++++|||
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d 92 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN--IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIYVID 92 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE--EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE--EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 999999999999999999987654 4567888843 34555554 779999999999999888999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCC
Q psy1417 123 VTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLN 157 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~ 157 (188)
++++++++.+..|+..+.+. ..++|+++ |||+|+.
T Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (181)
T 1fzq_A 93 SADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130 (181)
T ss_dssp TTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTST
T ss_pred CcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcc
Confidence 99999999999998887653 35688887 9999994
No 96
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.90 E-value=1.6e-22 Score=151.18 Aligned_cols=140 Identities=41% Similarity=0.747 Sum_probs=113.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++.+..+...+.++++.++....+.+++..+.+.+||++|++.+......+++.++++++||
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 85 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVY 85 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEE
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEE
Confidence 49999999999999999999999988888899988888888889999999999999999999888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCCC-Cccch--hh-hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGLN-QRSID--EV-NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl~-~~~i~--~~-~~~~~~~~~~~~e~~~~~ 182 (188)
|+++..+++.+..|+..+.... ...|+++ +||+|+. .+.+. +. .++...++ .++++++.+
T Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~-~~~d~Sal~ 151 (199)
T 2f9l_A 86 DIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNL-SFIETSALD 151 (199)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 9999999999999998887654 4678877 9999993 23332 22 44544443 567776654
No 97
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=2.4e-23 Score=152.94 Aligned_cols=111 Identities=25% Similarity=0.401 Sum_probs=92.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|++|||||||++++.++.+ ..+.+|++.. ...+.+++ +.+.+||++|++.+...+..+++.+|++++|||
T Consensus 20 ~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVD 94 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 999999999999999999997776 5667887743 34555555 779999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCCC
Q psy1417 123 VTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~~ 158 (188)
+++.++++.+..|+..+.+. ..+.|+++ +||+|+..
T Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 95 STDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133 (183)
T ss_dssp TTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred CCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC
Confidence 99999999999999988875 46788887 99999943
No 98
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.90 E-value=2e-22 Score=150.00 Aligned_cols=140 Identities=41% Similarity=0.757 Sum_probs=116.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|++|||||||++++.+..+...+.+|++.++....+.+++..+.+.+||++|.+++...+..+++.++++++||
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 109 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVY 109 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEE
Confidence 49999999999999999999999988889999999988888999999999999999999999888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCCCC-ccc--hhh-hhhhcCCCCceEEeeccc
Q psy1417 122 DVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGLNQ-RSI--DEV-NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl~~-~~i--~~~-~~~~~~~~~~~~e~~~~~ 182 (188)
|+++..+++.+..|+..+.+.. .+.|+++ +||+|+.+ +.+ ... .++...++ .++++++.+
T Consensus 110 d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~-~~ld~Sald 175 (191)
T 1oix_A 110 DIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGL-SFIETSALD 175 (191)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999999998887643 4678777 99999932 322 222 44544443 567776654
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.83 E-value=1.8e-25 Score=167.77 Aligned_cols=118 Identities=32% Similarity=0.622 Sum_probs=103.3
Q ss_pred CcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCE
Q psy1417 37 THIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHG 116 (188)
Q Consensus 37 ~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 116 (188)
...+ ||+++|++|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||++|++++...+..+++.+|+
T Consensus 28 ~~~~--ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 3th5_A 28 GQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 104 (204)
Confidence 3445 999999999999999999998888888888877555 3555677788889999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 117 VIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 117 vilv~d~~~~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
+++|||++++.+++.+. .|+..+....+++|+++ +||+|+.
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~ 147 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
Confidence 99999999999999997 89999988777889887 9999993
No 100
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.89 E-value=7.5e-23 Score=151.41 Aligned_cols=110 Identities=24% Similarity=0.394 Sum_probs=94.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|++|||||||++++..+.+. .+.||++.. ...+.+++ +.+.+||++|++.+...+..+++.+|++++|||
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 98 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVD 98 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEe
Confidence 9999999999999999999877765 466777743 34455554 779999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCC
Q psy1417 123 VTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLN 157 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~ 157 (188)
++++++++.+..|+..+.+. .++.|+++ +||+|+.
T Consensus 99 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 136 (189)
T 2x77_A 99 STDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLP 136 (189)
T ss_dssp TTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTST
T ss_pred CCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCc
Confidence 99999999999999888764 35688887 9999994
No 101
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.89 E-value=6e-24 Score=165.40 Aligned_cols=150 Identities=19% Similarity=0.248 Sum_probs=105.7
Q ss_pred CCCCCCCcccceeEEEEeCC---------CCCHHHHHHHHHh---CCCCCCcccee-eeeeEEEEEE-------------
Q psy1417 31 RGKNGPTHIFSQKSSFLQLV---------GVGKSSLLIRFSD---NTFSGSYITTI-GVDFKIRTID------------- 84 (188)
Q Consensus 31 ~~~~~~~~~~~~ki~vvG~~---------~~GKssLi~~l~~---~~~~~~~~~t~-~~~~~~~~~~------------- 84 (188)
+.+......+ ||+|+|++ |||||||+++|.+ +.+...+.+|. +.++..+.+.
T Consensus 11 ~~~~~~~~~~--ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~ 88 (255)
T 3c5h_A 11 RENLYFQGTY--NISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRS 88 (255)
T ss_dssp CTTSSCCSCE--EEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--
T ss_pred cCCCCCCcee--EEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeeccccccccccccc
Confidence 3333444456 99999999 9999999999998 56766777765 4444322221
Q ss_pred -eCCeEEEEEEEe-----------------------CCCcccccccchhccc---------------------cCCEEEE
Q psy1417 85 -VNGEKVKLQIWD-----------------------TAGQERFRTITSTYYR---------------------GTHGVIV 119 (188)
Q Consensus 85 -~~~~~~~l~l~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~vil 119 (188)
+++..+.+.+|| +.|+++|...+..+++ ++|++++
T Consensus 89 ~~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vil 168 (255)
T 3c5h_A 89 LEDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLL 168 (255)
T ss_dssp -------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEE
T ss_pred ccCCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEE
Confidence 456778999999 6677878777877777 7999999
Q ss_pred EEeCCCh--hhHHHHHHHHHHHHhh--CCCceEEE-EEcCCC-CCccchhh-hhhhcCCCCceEEeeccc
Q psy1417 120 VYDVTSG--ETFANVKRWLHEIENN--CEVVNRIL-GLRLGL-NQRSIDEV-NLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 120 v~d~~~~--~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl-~~~~i~~~-~~~~~~~~~~~~e~~~~~ 182 (188)
|||++++ ++|+.+..|+..+.+. .+++|++| |||+|+ .++.+++. +++.......++++|.++
T Consensus 169 V~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~ 238 (255)
T 3c5h_A 169 GIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARS 238 (255)
T ss_dssp EEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTT
T ss_pred EEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 9999998 9999999999998875 35688877 999998 44445433 444443344678887665
No 102
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.89 E-value=2.1e-23 Score=166.75 Aligned_cols=110 Identities=12% Similarity=0.083 Sum_probs=87.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCC---CccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccc---cchhccccCCE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSG---SYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT---ITSTYYRGTHG 116 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~---~~~~~~~~~~~ 116 (188)
||+++|+.|||||||++++.++.++. .+.+|+|.++.. ++ ..+++++|||+|+++|.. .++.+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 78999999999999999887554332 256888877753 22 348899999999999964 36889999999
Q ss_pred EEEEEeCCCh--hhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 117 VIVVYDVTSG--ETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 117 vilv~d~~~~--~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
+|+|||++++ ++++.+.+|+..+....+++|+++ |||+|+.
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~ 119 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGL 119 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSS
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccC
Confidence 9999999997 444555556777767778899888 9999993
No 103
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.89 E-value=9.4e-23 Score=162.70 Aligned_cols=138 Identities=21% Similarity=0.263 Sum_probs=107.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCC---CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccc-----cccchhcccc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFS---GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERF-----RTITSTYYRG 113 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~-----~~~~~~~~~~ 113 (188)
+||+++|++|||||||++++.++... ..+.+|++..+.. +.+++ .+.+.+||++|++.+ ...+..++++
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQM 80 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence 49999999999999999999876322 2466788876653 33433 578999999999988 6778888999
Q ss_pred CCEEEEEEeCCChhhHHHHHHH---HHHHHhhCCCceEEE-EEcCCCCC---cc----ch---hhhhhhcCCC--CceEE
Q psy1417 114 THGVIVVYDVTSGETFANVKRW---LHEIENNCEVVNRIL-GLRLGLNQ---RS----ID---EVNLCHRGSV--DGSVE 177 (188)
Q Consensus 114 ~~~vilv~d~~~~~s~~~~~~~---~~~i~~~~~~~pilv-gnK~Dl~~---~~----i~---~~~~~~~~~~--~~~~e 177 (188)
+|++++|||+++.++++.+..| +..+....+++|+++ |||+|+.+ +. +. ..+++...+. ..+++
T Consensus 81 ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~ 160 (307)
T 3r7w_A 81 VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFP 160 (307)
T ss_dssp CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEE
T ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 9999999999999999999766 445555677899988 99999843 32 22 2267777764 67788
Q ss_pred eeccc
Q psy1417 178 STSVD 182 (188)
Q Consensus 178 ~~~~~ 182 (188)
+|.++
T Consensus 161 tSa~~ 165 (307)
T 3r7w_A 161 TSIWD 165 (307)
T ss_dssp CCTTS
T ss_pred eeecC
Confidence 87665
No 104
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.88 E-value=6e-22 Score=149.36 Aligned_cols=112 Identities=17% Similarity=0.260 Sum_probs=88.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCe-EEEEEEEeCCCcccccc-cchhccccCCEEEEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGE-KVKLQIWDTAGQERFRT-ITSTYYRGTHGVIVV 120 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~l~D~~g~~~~~~-~~~~~~~~~~~vilv 120 (188)
||+++|++|||||||+++|.++.+...+.++. .++.. +.+++. .+.+.+||++|++.+.. .+..+++.+|++++|
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v 85 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFV 85 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEE
Confidence 99999999999999999999998887776543 34433 555544 58899999999999887 788889999999999
Q ss_pred EeCCChh-hHHHHHHHHH-HHHh---hCCCceEEE-EEcCCCC
Q psy1417 121 YDVTSGE-TFANVKRWLH-EIEN---NCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 121 ~d~~~~~-s~~~~~~~~~-~i~~---~~~~~pilv-gnK~Dl~ 157 (188)
||+++.. ++..+..|+. .+.. ..+++|+++ |||+|+.
T Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (214)
T 2fh5_B 86 VDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 128 (214)
T ss_dssp EETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTST
T ss_pred EECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCC
Confidence 9999854 4666655444 4433 134688887 9999993
No 105
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.87 E-value=4.8e-22 Score=160.03 Aligned_cols=112 Identities=21% Similarity=0.415 Sum_probs=89.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+|+|++|||||||+++|.++.+... .||++..+. .+...+ +.+.+|||+|++.+...+..+++.+|++|+||
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~ 240 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 240 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEEEE
T ss_pred ceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 3999999999999999999998876544 467775543 344444 78999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC--CCceEEE-EEcCCCCC
Q psy1417 122 DVTSGETFANVKRWLHEIENNC--EVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~~--~~~pilv-gnK~Dl~~ 158 (188)
|+++.++|+.+..|+..+.+.. +++|++| +||+|+.+
T Consensus 241 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 280 (329)
T 3o47_A 241 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280 (329)
T ss_dssp ETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred ECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCc
Confidence 9999999999998888876633 5789887 99999943
No 106
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.87 E-value=3.2e-21 Score=140.81 Aligned_cols=108 Identities=20% Similarity=0.229 Sum_probs=86.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
||+++|++|||||||+++|.++.+...+.++.+.++....+.+++. .+.+||++|++.+...+..+++.+|++++|||
T Consensus 10 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 87 (178)
T 2lkc_A 10 VVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVILVVA 87 (178)
T ss_dssp EEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEEEEEE
Confidence 9999999999999999999998888777777666666666777774 47899999999999999899999999999999
Q ss_pred CCC---hhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC
Q psy1417 123 VTS---GETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 123 ~~~---~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~ 158 (188)
+++ .++++.+ ..+. ..++|+++ +||+|+..
T Consensus 88 ~~~~~~~~~~~~l----~~~~--~~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 88 ADDGVMPQTVEAI----NHAK--AANVPIIVAINKMDKPE 121 (178)
T ss_dssp TTCCCCHHHHHHH----HHHG--GGSCCEEEEEETTTSSC
T ss_pred CCCCCcHHHHHHH----HHHH--hCCCCEEEEEECccCCc
Confidence 988 4444333 2222 23578777 99999954
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.86 E-value=6e-21 Score=161.19 Aligned_cols=112 Identities=26% Similarity=0.488 Sum_probs=95.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~ 121 (188)
+||+++|+++||||||+++|.++.+. .+.+|++..+. .+.+++ +.+.+|||+|++.+...+..+++.+|++|+||
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~ 397 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 397 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEE--EEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEEEEE
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEE--EEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 49999999999999999999988855 45678885554 344444 78999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCCCCC
Q psy1417 122 DVTSGETFANVKRWLHEIENN--CEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 122 d~~~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~Dl~~ 158 (188)
|+++.++|+.+..|+..+.+. ..++|++| +||+|+..
T Consensus 398 D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 398 DCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437 (497)
T ss_dssp ETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSS
T ss_pred ECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCc
Confidence 999999999999999888763 25789887 99999943
No 108
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.85 E-value=1.8e-20 Score=136.00 Aligned_cols=133 Identities=17% Similarity=0.140 Sum_probs=92.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccc------cchhccc--c
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT------ITSTYYR--G 113 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~------~~~~~~~--~ 113 (188)
+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++ ..+.+|||+|++.+.. ....+++ +
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 4999999999999999999998776555555555555555566665 5799999999987752 2344554 7
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC-CCccch--hhhhhhcCCCCceEEeeccc
Q psy1417 114 THGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL-NQRSID--EVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 114 ~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl-~~~~i~--~~~~~~~~~~~~~~e~~~~~ 182 (188)
++++++|+|+++.+ ....|+.++.+. +.|+++ +||+|+ .++.++ ..+++...+ ..++++|.++
T Consensus 82 ~~~~i~v~D~~~~~---~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~SA~~ 148 (165)
T 2wji_A 82 PDLVVNIVDATALE---RNLYLTLQLMEM--GANLLLALNKMDLAKSLGIEIDVDKLEKILG-VKVVPLSAAK 148 (165)
T ss_dssp CSEEEEEEETTCHH---HHHHHHHHHHHT--TCCEEEEEECHHHHHHTTCCCCHHHHHHHHT-SCEEECBGGG
T ss_pred CCEEEEEecCCchh---HhHHHHHHHHhc--CCCEEEEEEchHhccccChhhHHHHHHHHhC-CCEEEEEcCC
Confidence 99999999999854 345577777653 578777 999998 233332 345555555 3567777654
No 109
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.85 E-value=1.4e-20 Score=135.09 Aligned_cols=135 Identities=16% Similarity=0.106 Sum_probs=87.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCC-CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccc-------cccchhcccc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFS-GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERF-------RTITSTYYRG 113 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~-------~~~~~~~~~~ 113 (188)
.||+++|++|||||||++++.++.+. ....++...+.....+..++. .+.+||++|...+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 39999999999999999999987643 122233333445556666664 6899999998763 3445567889
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCccchhhhhhhcCCCCceEEeeccc
Q psy1417 114 THGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSIDEVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 114 ~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~~~~~~~~~~~~~~~e~~~~~ 182 (188)
+|++++|||+++..+... .|+....+. .++|+++ +||+|+.+......+++ +.+...++++|.++
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~Sa~~ 145 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR-KGKPVILVATKVDDPKHELYLGPLY-GLGFGDPIPTSSEH 145 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH-HTCCEEEEEECCCSGGGGGGCGGGG-GGSSCSCEECBTTT
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh-cCCCEEEEEECcccccchHhHHHHH-hCCCCCeEEEeccc
Confidence 999999999998544322 222222221 3478777 99999954432233444 55665788888665
No 110
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=7.8e-22 Score=149.14 Aligned_cols=109 Identities=18% Similarity=0.259 Sum_probs=89.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCC---CccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhcccc----CC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSG---SYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG----TH 115 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~----~~ 115 (188)
||+++|++|||||||+++|.+..+.. .+.++++.++ ..+.+.+||++|++.+...+..+++. ++
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 84 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK 84 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhccccCC
Confidence 99999999999999999999887654 3455555433 33568999999999998888888877 89
Q ss_pred EEEEEEeCC-ChhhHHHHHHHHHHHHhh-----CCCceEEE-EEcCCC-CCcc
Q psy1417 116 GVIVVYDVT-SGETFANVKRWLHEIENN-----CEVVNRIL-GLRLGL-NQRS 160 (188)
Q Consensus 116 ~vilv~d~~-~~~s~~~~~~~~~~i~~~-----~~~~pilv-gnK~Dl-~~~~ 160 (188)
++++|||++ +.+++..+..|+..+... .+++|+++ +||+|+ ..+.
T Consensus 85 ~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 85 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred EEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 999999999 889999999998888763 25688887 999999 3443
No 111
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.84 E-value=1.7e-20 Score=143.06 Aligned_cols=142 Identities=14% Similarity=0.052 Sum_probs=90.8
Q ss_pred CcccceeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCc------ccc---cccc
Q psy1417 37 THIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQ------ERF---RTIT 107 (188)
Q Consensus 37 ~~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~------~~~---~~~~ 107 (188)
...+ ||+|+|++|||||||+++|.++.+.....+.............++ +.+.+|||+|. +.. ....
T Consensus 27 ~~~~--kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 102 (228)
T 2qu8_A 27 PHKK--TIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTI 102 (228)
T ss_dssp TTSE--EEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHH
T ss_pred CCCC--EEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHH
Confidence 3445 999999999999999999998766422222212222223333344 67999999998 331 1112
Q ss_pred hhccccCCEEEEEEeCCChhhHHH--HHHHHHHHHhhCCCceEEE-EEcCCC-CCccchhh------hhhhcCC-CCceE
Q psy1417 108 STYYRGTHGVIVVYDVTSGETFAN--VKRWLHEIENNCEVVNRIL-GLRLGL-NQRSIDEV------NLCHRGS-VDGSV 176 (188)
Q Consensus 108 ~~~~~~~~~vilv~d~~~~~s~~~--~~~~~~~i~~~~~~~pilv-gnK~Dl-~~~~i~~~------~~~~~~~-~~~~~ 176 (188)
..++..+|++++|||+++..+++. ...|+..+....+++|+++ +||+|+ ..+.+... +++...+ ...++
T Consensus 103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS 182 (228)
T ss_dssp HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence 334677899999999999888753 3467777776656788887 999998 44444322 3333332 14677
Q ss_pred Eeeccc
Q psy1417 177 ESTSVD 182 (188)
Q Consensus 177 e~~~~~ 182 (188)
++|.++
T Consensus 183 ~~SA~~ 188 (228)
T 2qu8_A 183 SFSTLT 188 (228)
T ss_dssp ECCTTT
T ss_pred EEeccc
Confidence 877654
No 112
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.83 E-value=8.3e-21 Score=140.67 Aligned_cols=111 Identities=18% Similarity=0.248 Sum_probs=84.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCC---CccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhcccc----CC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSG---SYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRG----TH 115 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~----~~ 115 (188)
||+++|++|||||||+++|.+..+.. .+.++.+.++ ..+.+.+||++|++.+...+..++.. +|
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 120 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK 120 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhhcccCC
Confidence 99999999999999999999887644 2223332221 33568999999999988777777776 89
Q ss_pred EEEEEEeCC-ChhhHHHHHHHHHHHHhh-----CCCceEEE-EEcCCC-CCccch
Q psy1417 116 GVIVVYDVT-SGETFANVKRWLHEIENN-----CEVVNRIL-GLRLGL-NQRSID 162 (188)
Q Consensus 116 ~vilv~d~~-~~~s~~~~~~~~~~i~~~-----~~~~pilv-gnK~Dl-~~~~i~ 162 (188)
++++|||++ +.+++..+..|+..+... .+++|+++ +||+|+ ..+.++
T Consensus 121 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 175 (193)
T 2ged_A 121 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS 175 (193)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred EEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHH
Confidence 999999999 899999999988887653 24688877 999998 444444
No 113
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.83 E-value=3.3e-21 Score=164.27 Aligned_cols=137 Identities=17% Similarity=0.217 Sum_probs=97.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEE------EE--eCCeEEEEEEEeCCCcccccccchhcccc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRT------ID--VNGEKVKLQIWDTAGQERFRTITSTYYRG 113 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~------~~--~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ 113 (188)
+||+++|.+|||||||++++.++.+...+.+|++.++.... +. .++..+.+.+||++|++.+......+++.
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~ 121 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTR 121 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccC
Confidence 49999999999999999999999988888899987776442 11 23346789999999999999999999999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC-CCccchhhh---hhhcCCCCceEEeeccc
Q psy1417 114 THGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL-NQRSIDEVN---LCHRGSVDGSVESTSVD 182 (188)
Q Consensus 114 ~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl-~~~~i~~~~---~~~~~~~~~~~e~~~~~ 182 (188)
+|++++|||+++. +.+..|+..+....++.|++| |||+|+ .++.+..++ .+...+ ..++++|.++
T Consensus 122 ~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~vSA~~ 191 (535)
T 3dpu_A 122 SSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIE-NRFHRISCKN 191 (535)
T ss_dssp SEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGT-TCEEECCC--
T ss_pred CcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcC-CceEEEecCc
Confidence 9999999998864 556789999999888899888 999999 445544332 222222 2367776554
No 114
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.82 E-value=5.8e-20 Score=136.18 Aligned_cols=134 Identities=15% Similarity=0.160 Sum_probs=85.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCC----------cccccccchhccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAG----------QERFRTITSTYYR 112 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g----------~~~~~~~~~~~~~ 112 (188)
||+++|++|||||||+++|.++.+...+.++.+..........++ .+.+||+|| ++.+......+++
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 101 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYIT 101 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHHHHh
Confidence 999999999999999999998877666667766555444444443 489999999 6777777777777
Q ss_pred cC---CEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC-CCccchh--hhhhh---cCCCCceEEeeccc
Q psy1417 113 GT---HGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL-NQRSIDE--VNLCH---RGSVDGSVESTSVD 182 (188)
Q Consensus 113 ~~---~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl-~~~~i~~--~~~~~---~~~~~~~~e~~~~~ 182 (188)
.+ |++++|+|+++..++.... ++..+.. .+.|+++ +||+|+ +.+.+.. ++... ......++++|.++
T Consensus 102 ~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 178 (195)
T 1svi_A 102 TREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSET 178 (195)
T ss_dssp HCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTT
T ss_pred hhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccC
Confidence 76 9999999999887776643 2222322 4578777 999998 4444432 22222 22345677777654
No 115
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.82 E-value=1.1e-19 Score=134.05 Aligned_cols=133 Identities=18% Similarity=0.166 Sum_probs=95.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccc------ccchhccc--c
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR------TITSTYYR--G 113 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~------~~~~~~~~--~ 113 (188)
+||+++|++|||||||+++|.+..+...+.++.+.+.....+..++ ..+.+||++|++.+. .....++. .
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEK 85 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhccC
Confidence 3999999999999999999998765544455555555556666665 679999999998774 23445554 4
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC-CCccc--hhhhhhhcCCCCceEEeeccc
Q psy1417 114 THGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL-NQRSI--DEVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 114 ~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl-~~~~i--~~~~~~~~~~~~~~~e~~~~~ 182 (188)
++++++|+|.++ ++....|+..+.. .+.|+++ +||+|+ ..+.+ ...+++...+. .++++|+.+
T Consensus 86 ~~~~i~v~d~~~---~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 152 (188)
T 2wjg_A 86 PDLVVNIVDATA---LERNLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGV-KVVPLSAAK 152 (188)
T ss_dssp CSEEEEEEEGGG---HHHHHHHHHHHHT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTS-CEEECBGGG
T ss_pred CCEEEEEecchh---HHHHHHHHHHHHh--cCCCEEEEEEhhhccccccchHHHHHHHHHhCC-CeEEEEecC
Confidence 899999999875 5666778877765 3578777 999998 23322 23355555443 567777654
No 116
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.81 E-value=8.3e-20 Score=133.63 Aligned_cols=112 Identities=19% Similarity=0.132 Sum_probs=83.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCC-CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccc--------hhccc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFS-GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTIT--------STYYR 112 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~--------~~~~~ 112 (188)
.||+++|++|||||||+++|.+..+. ....++...++....+.+++. .+.+|||+|...+.... ..+++
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 39999999999999999999976542 122233344555567777774 48899999986542111 13578
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCceEEE-EEcCCC
Q psy1417 113 GTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL-GLRLGL 156 (188)
Q Consensus 113 ~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl 156 (188)
.+|++++|||+++..+++ ...|+..+.+.. .++|+++ +||+|+
T Consensus 83 ~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl 127 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADI 127 (172)
T ss_dssp TCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHH
T ss_pred hCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccC
Confidence 999999999999988876 457888777654 4688877 999998
No 117
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.80 E-value=1.8e-20 Score=138.17 Aligned_cols=135 Identities=18% Similarity=0.171 Sum_probs=95.3
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCC-----------cccccccchhc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAG-----------QERFRTITSTY 110 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g-----------~~~~~~~~~~~ 110 (188)
+||+++|++|||||||+++|.++.+...+.++..... ..+.++ .+.+||+|| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 3999999999999999999999888777666554333 233333 589999999 66777777777
Q ss_pred ccc-CCEEEEEEeCCChhhHHHH-HHHHHH--------HHh--hCCCceEEE-EEcCCCCCcc-chhhhhhhcCCCC---
Q psy1417 111 YRG-THGVIVVYDVTSGETFANV-KRWLHE--------IEN--NCEVVNRIL-GLRLGLNQRS-IDEVNLCHRGSVD--- 173 (188)
Q Consensus 111 ~~~-~~~vilv~d~~~~~s~~~~-~~~~~~--------i~~--~~~~~pilv-gnK~Dl~~~~-i~~~~~~~~~~~~--- 173 (188)
++. ++++++||++.+..+++.+ ..|... +.+ ...++|+++ +||+|+.... ....+++...+..
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 155 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSE 155 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGG
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhc
Confidence 777 7877777777778888887 567643 222 224688877 9999984332 2233566666653
Q ss_pred ---ceEEeeccc
Q psy1417 174 ---GSVESTSVD 182 (188)
Q Consensus 174 ---~~~e~~~~~ 182 (188)
.++++|+++
T Consensus 156 ~~~~~~~~Sa~~ 167 (190)
T 2cxx_A 156 IDKVFIPISAKF 167 (190)
T ss_dssp HHHHEEECCTTT
T ss_pred cCCcEEEEecCC
Confidence 357777654
No 118
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.78 E-value=1.6e-18 Score=127.97 Aligned_cols=131 Identities=17% Similarity=0.175 Sum_probs=89.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCC----------cccccccchhccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAG----------QERFRTITSTYYR 112 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g----------~~~~~~~~~~~~~ 112 (188)
||+++|+.|||||||+++|.++. ...+.++.+..........+. .+.+||++| ++.+...+..+++
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVEDYFK 100 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHHHHHh
Confidence 99999999999999999999877 334455555444433333332 478999999 6667777777776
Q ss_pred cC---CEEEEEEeCCChhh--HHHHHHHHHHHHhhCCCceEEE-EEcCCCC-Cccch--hh---hhhhcCCCCceEEeec
Q psy1417 113 GT---HGVIVVYDVTSGET--FANVKRWLHEIENNCEVVNRIL-GLRLGLN-QRSID--EV---NLCHRGSVDGSVESTS 180 (188)
Q Consensus 113 ~~---~~vilv~d~~~~~s--~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~-~~~i~--~~---~~~~~~~~~~~~e~~~ 180 (188)
.+ +++++|+|.++..+ ...+..|+... ++|+++ +||+|+. ..... .+ +.+...+...++++|.
T Consensus 101 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (195)
T 3pqc_A 101 NRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSS 175 (195)
T ss_dssp HCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCT
T ss_pred cCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEec
Confidence 65 89999999887533 33444565443 478777 9999983 22222 11 3444445567888876
Q ss_pred cc
Q psy1417 181 VD 182 (188)
Q Consensus 181 ~~ 182 (188)
++
T Consensus 176 ~~ 177 (195)
T 3pqc_A 176 VT 177 (195)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 119
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.78 E-value=1.7e-18 Score=134.88 Aligned_cols=133 Identities=21% Similarity=0.172 Sum_probs=92.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccc------hhcc--cc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTIT------STYY--RG 113 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~------~~~~--~~ 113 (188)
+||+++|++|||||||+++|.+..+.....|....+.....+..++ ..+.+||+||...+.... ..++ ..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 83 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLLKGD 83 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHhhcC
Confidence 3999999999999999999998765444444444444444444444 679999999998776432 4444 57
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC-CCcc--chhhhhhhcCCCCceEEeeccc
Q psy1417 114 THGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL-NQRS--IDEVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 114 ~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl-~~~~--i~~~~~~~~~~~~~~~e~~~~~ 182 (188)
+|++++|+|+++.++. ..|..++... ++|+++ +||+|+ ..+. .+..+++...++ .+++++..+
T Consensus 84 ~d~ii~V~D~t~~~~~---~~~~~~l~~~--~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~-~vi~~SA~~ 150 (258)
T 3a1s_A 84 ADLVILVADSVNPEQS---LYLLLEILEM--EKKVILAMTAIDEAKKTGMKIDRYELQKHLGI-PVVFTSSVT 150 (258)
T ss_dssp CSEEEEEEETTSCHHH---HHHHHHHHTT--TCCEEEEEECHHHHHHTTCCBCHHHHHHHHCS-CEEECCTTT
T ss_pred CCEEEEEeCCCchhhH---HHHHHHHHhc--CCCEEEEEECcCCCCccchHHHHHHHHHHcCC-CEEEEEeeC
Confidence 9999999999986554 3466666553 488877 999998 2222 334466666664 466666543
No 120
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.77 E-value=8.6e-19 Score=136.40 Aligned_cols=132 Identities=14% Similarity=0.093 Sum_probs=94.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccc----------cchhcc-
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT----------ITSTYY- 111 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~----------~~~~~~- 111 (188)
||+++|.+|||||||+++|.+..+.....|++..+.....+.+++. .+.+||+||...+.. ....++
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 8999999999999999999987655555566666666667777774 689999999877754 344556
Q ss_pred -ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC-CC--ccchhhhhhhcCCCCceEEeeccc
Q psy1417 112 -RGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL-NQ--RSIDEVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 112 -~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl-~~--~~i~~~~~~~~~~~~~~~e~~~~~ 182 (188)
..+|++++|+|+++.+++..+..|+.++ ++|+++ +||+|+ .. ......++....+. ..++++..+
T Consensus 81 ~~~~d~vi~VvDas~~~~~~~l~~~l~~~-----~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~-~vi~~SA~~ 150 (256)
T 3iby_A 81 DLEYDCIINVIDACHLERHLYLTSQLFEL-----GKPVVVALNMMDIAEHRGISIDTEKLESLLGC-SVIPIQAHK 150 (256)
T ss_dssp HSCCSEEEEEEEGGGHHHHHHHHHHHTTS-----CSCEEEEEECHHHHHHTTCEECHHHHHHHHCS-CEEECBGGG
T ss_pred hCCCCEEEEEeeCCCchhHHHHHHHHHHc-----CCCEEEEEEChhcCCcCCcHHHHHHHHHHcCC-CEEEEECCC
Confidence 7899999999999977666555544332 478877 999998 22 22334455555553 456665443
No 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.76 E-value=2.7e-18 Score=134.80 Aligned_cols=132 Identities=17% Similarity=0.142 Sum_probs=90.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccccc----------chhc-
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTI----------TSTY- 110 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~----------~~~~- 110 (188)
++|+++|.+|||||||+++|.+..+...+.++...+.....+..++ ..+.+|||||...+... ...+
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 4999999999999999999998775544555555555555666655 45789999998776621 1222
Q ss_pred -cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC-CCcc--chhhhhhhcCCCCceEEeecc
Q psy1417 111 -YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL-NQRS--IDEVNLCHRGSVDGSVESTSV 181 (188)
Q Consensus 111 -~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl-~~~~--i~~~~~~~~~~~~~~~e~~~~ 181 (188)
.+.+|++++|+|+++.++...+..|+.+. ++|+++ +||+|+ ..+. ....+++...+. ..+++|..
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~-~~i~~SA~ 151 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLLEL-----GIPCIVALNMLDIAEKQNIRIEIDALSARLGC-PVIPLVST 151 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHHHH-----TCCEEEEEECHHHHHHTTEEECHHHHHHHHTS-CEEECCCG
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHHhc-----CCCEEEEEECccchhhhhHHHHHHHHHHhcCC-CEEEEEcC
Confidence 26899999999999876655554444433 488877 999998 2222 233455555553 45666544
No 122
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.75 E-value=3.4e-18 Score=134.12 Aligned_cols=132 Identities=14% Similarity=0.122 Sum_probs=89.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccc------cchhccc--c
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT------ITSTYYR--G 113 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~------~~~~~~~--~ 113 (188)
+||+++|++|||||||+++|.+........|. ..+......++. ...+.+||+||...+.. ....++. .
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg--~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPG--VTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCCCCSSSC--CCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCC--CcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 39999999999999999999977644333343 223333344454 56799999999987752 3445554 5
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC-CCcc--chhhhhhhcCCCCceEEeeccc
Q psy1417 114 THGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL-NQRS--IDEVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 114 ~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl-~~~~--i~~~~~~~~~~~~~~~e~~~~~ 182 (188)
+|++++|||+++.++. ..|..++.. .++|+++ +||+|+ ..+. .+..+++...+. .++++|..+
T Consensus 81 ~d~vi~V~D~t~~e~~---~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~-~vi~~SA~~ 147 (272)
T 3b1v_A 81 ADSILNVVDATNLERN---LYLTTQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGV-PVVATSALK 147 (272)
T ss_dssp CSEEEEEEEGGGHHHH---HHHHHHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTS-CEEECBTTT
T ss_pred CCEEEEEecCCchHhH---HHHHHHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCC-CEEEEEccC
Confidence 9999999999986544 456666655 3588877 999998 2222 333456666554 467776544
No 123
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.74 E-value=3.8e-17 Score=129.94 Aligned_cols=112 Identities=16% Similarity=0.114 Sum_probs=77.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCC-CccceeeeeeEEEEEEeCCeEEEEEEEeCCCccc--------ccccchhccc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSG-SYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER--------FRTITSTYYR 112 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~--------~~~~~~~~~~ 112 (188)
.+|+++|.+|||||||+++|++.++.. ...+.............+ ..++.+|||||... +......+++
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 389999999999999999999877642 222211111221222333 36799999999865 3444556789
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHH-HHHHhhCCCceEEE-EEcCCCC
Q psy1417 113 GTHGVIVVYDVTSGETFANVKRWL-HEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 113 ~~~~vilv~d~~~~~s~~~~~~~~-~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
.+|++++|||+++..+.. ..|+ ..+.+..++.|+++ +||+|+.
T Consensus 86 ~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGNKLDAA 130 (301)
T ss_dssp SCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEECGGGC
T ss_pred cCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEEEEECcccC
Confidence 999999999999865443 3454 45555545688877 9999984
No 124
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.74 E-value=7e-18 Score=141.67 Aligned_cols=137 Identities=9% Similarity=0.013 Sum_probs=77.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCC-CCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccc--------hhccc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTF-SGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTIT--------STYYR 112 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~--------~~~~~ 112 (188)
+||+++|.+|||||||+++|.+... .....++...+.....+.+++ +.+.+|||+|...+.... ..+++
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~ 311 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKMA 311 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhcc
Confidence 3899999999999999999987642 222234334445555666776 569999999987665332 33678
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC-CccchhhhhhhcCCCCceEEeeccc
Q psy1417 113 GTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN-QRSIDEVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 113 ~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~-~~~i~~~~~~~~~~~~~~~e~~~~~ 182 (188)
.+|++++|||+++..+++.+..+...+.. ..+.|+++ +||+|+. ...++.+++... +...++++|.++
T Consensus 312 ~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~~~piIvV~NK~Dl~~~~~~~~~~l~~~-~~~~~i~vSAkt 381 (476)
T 3gee_A 312 EADLILYLLDLGTERLDDELTEIRELKAA-HPAAKFLTVANKLDRAANADALIRAIADG-TGTEVIGISALN 381 (476)
T ss_dssp SCSEEEEEEETTTCSSGGGHHHHHHHHHH-CTTSEEEEEEECTTSCTTTHHHHHHHHHH-HTSCEEECBTTT
T ss_pred cCCEEEEEEECCCCcchhhhHHHHHHHHh-cCCCCEEEEEECcCCCCccchhHHHHHhc-CCCceEEEEECC
Confidence 99999999999998887654444333332 23688877 9999993 343333333332 234567776554
No 125
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.74 E-value=3.1e-17 Score=130.80 Aligned_cols=137 Identities=12% Similarity=0.049 Sum_probs=94.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCC-ccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccc----------ccchhcc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGS-YITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR----------TITSTYY 111 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~----------~~~~~~~ 111 (188)
.|+++|.+|||||||+++|++.++... ..+.............+ ..+.+.+|||||...+. .....++
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l 90 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL 90 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHHHHHHh
Confidence 899999999999999999998775421 11111112222233333 14679999999985543 4556678
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC-Cccc-hh--hhhhhcC-CCCceEEeeccc
Q psy1417 112 RGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN-QRSI-DE--VNLCHRG-SVDGSVESTSVD 182 (188)
Q Consensus 112 ~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~-~~~i-~~--~~~~~~~-~~~~~~e~~~~~ 182 (188)
+.+|++++|+|+++..+++....|+..+... ++|+++ +||+|+. .+.. .+ .++.... .....+++|..+
T Consensus 91 ~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~ 165 (308)
T 3iev_A 91 EEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALK 165 (308)
T ss_dssp HHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTT
T ss_pred hcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 8999999999999998888888888888763 478777 9999984 3332 22 1344444 345667776544
No 126
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.73 E-value=2.3e-17 Score=129.14 Aligned_cols=133 Identities=14% Similarity=0.114 Sum_probs=93.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccc------cchhcc--cc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT------ITSTYY--RG 113 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~------~~~~~~--~~ 113 (188)
+||+++|++|||||||+++|.+..+.....++++.+.....+.+++. .+.+||+||...+.. ....++ ..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 39999999999999999999987765555666666666667777764 489999999887765 344444 67
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC-C--CccchhhhhhhcCCCCceEEeecc
Q psy1417 114 THGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL-N--QRSIDEVNLCHRGSVDGSVESTSV 181 (188)
Q Consensus 114 ~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl-~--~~~i~~~~~~~~~~~~~~~e~~~~ 181 (188)
+|++++|+|+++.+ ....|..++.... .+|+++ +||+|+ . .......++....+. ..++++..
T Consensus 82 ~d~vi~v~D~~~~~---~~~~~~~~~~~~~-~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~-~~~~~Sa~ 148 (271)
T 3k53_A 82 ADVIVDIVDSTCLM---RNLFLTLELFEME-VKNIILVLNKFDLLKKKGAKIDIKKMRKELGV-PVIPTNAK 148 (271)
T ss_dssp CSEEEEEEEGGGHH---HHHHHHHHHHHTT-CCSEEEEEECHHHHHHHTCCCCHHHHHHHHSS-CEEECBGG
T ss_pred CcEEEEEecCCcch---hhHHHHHHHHhcC-CCCEEEEEEChhcCcccccHHHHHHHHHHcCC-cEEEEEeC
Confidence 99999999998853 3334444554432 277777 999997 2 222334455555553 35566544
No 127
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.73 E-value=3.3e-18 Score=129.43 Aligned_cols=112 Identities=15% Similarity=0.093 Sum_probs=73.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeC-CeEEEEEEEeCCCc----------ccccccchhcc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVN-GEKVKLQIWDTAGQ----------ERFRTITSTYY 111 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~g~----------~~~~~~~~~~~ 111 (188)
||+++|..|||||||+++|++..+.....++.+........... .....+.+|||||. +.+......++
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 110 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYL 110 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHH
Confidence 99999999999999999999876322222333332332333333 33466899999993 34445555556
Q ss_pred cc---CCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 112 RG---THGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 112 ~~---~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
+. +|++++|+|+++..+. ....|+..+.. .++|+++ +||+|+.
T Consensus 111 ~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~--~~~p~i~v~nK~Dl~ 157 (223)
T 4dhe_A 111 QTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP--TGKPIHSLLTKCDKL 157 (223)
T ss_dssp HHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG--GCCCEEEEEECGGGS
T ss_pred hcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh--cCCCEEEEEeccccC
Confidence 55 7889999999875432 22345555554 3478777 9999983
No 128
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.71 E-value=9.9e-17 Score=124.98 Aligned_cols=111 Identities=15% Similarity=0.147 Sum_probs=78.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCC--CCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccc-------
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTF--SGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYR------- 112 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~------- 112 (188)
+||+++|..|+|||||+++|++..+ ...+.++ ........+..++ ..+.+|||||+..+....+.+++
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~-t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAE-GLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC--CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCc-ceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 3999999999999999999998764 2222221 2223334445555 47999999999887666555544
Q ss_pred --cCCEEEEEEeCCChhhHHHH-HHHHHHHHhhCC-C--ceEEE-EEcCCC
Q psy1417 113 --GTHGVIVVYDVTSGETFANV-KRWLHEIENNCE-V--VNRIL-GLRLGL 156 (188)
Q Consensus 113 --~~~~vilv~d~~~~~s~~~~-~~~~~~i~~~~~-~--~pilv-gnK~Dl 156 (188)
.+|++++|++++... +... ..|+..+..... + .|+++ +||+|+
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl 163 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQF 163 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCccc
Confidence 789999999987654 4444 467777776432 2 37666 999998
No 129
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.71 E-value=4.8e-17 Score=135.51 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=82.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCC-CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccc---------ccccchhccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFS-GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER---------FRTITSTYYR 112 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~---------~~~~~~~~~~ 112 (188)
+|+++|.+|||||||+++|.+.+.. ....+.+..+.....+.+++. .+.+|||+|.+. +......+++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 8999999999999999999977632 233344444555666777775 478999999764 2334566789
Q ss_pred cCCEEEEEEeCCChhhHHH--HHHHHHHHHhhCCCceEEE-EEcCCCCCc-cchh-hhhhhcCCCCceEEeeccc
Q psy1417 113 GTHGVIVVYDVTSGETFAN--VKRWLHEIENNCEVVNRIL-GLRLGLNQR-SIDE-VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 113 ~~~~vilv~d~~~~~s~~~--~~~~~~~i~~~~~~~pilv-gnK~Dl~~~-~i~~-~~~~~~~~~~~~~e~~~~~ 182 (188)
.+|++++|||+++..+... +..|+.. . +.|+++ +||+|+.+. .... .++. ..+...++++|..+
T Consensus 81 ~ad~il~V~D~~~~~~~~d~~i~~~l~~---~--~~p~ilv~NK~D~~~~~~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKEDESLADFLRK---S--TVDTILVANKAENLREFEREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TCSEEEEEEETTTCCCHHHHHHHHHHHH---H--TCCEEEEEESCCSHHHHHHHTHHHHG-GGSSCSCEECBTTT
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHH---c--CCCEEEEEeCCCCccccHHHHHHHHH-hcCCCCEEEEeccC
Confidence 9999999999987655432 3344432 2 477776 999998432 1111 2333 34555567766543
No 130
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.70 E-value=2.8e-17 Score=136.81 Aligned_cols=116 Identities=18% Similarity=0.151 Sum_probs=80.4
Q ss_pred cccceeEEEEeCCCCCHHHHHHHHHhCCCC-CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCc----------cccccc
Q psy1417 38 HIFSQKSSFLQLVGVGKSSLLIRFSDNTFS-GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQ----------ERFRTI 106 (188)
Q Consensus 38 ~~~~~ki~vvG~~~~GKssLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~----------~~~~~~ 106 (188)
..+ ||+++|++|||||||+++|++..+. ....++...+.....+.+++. .+.+|||+|+ +.|...
T Consensus 174 ~~~--ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 249 (436)
T 2hjg_A 174 EVI--QFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 249 (436)
T ss_dssp TCE--EEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHH
T ss_pred cCc--EEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHH
Confidence 345 9999999999999999999977652 222233333444455666764 4899999997 334333
Q ss_pred ch-hccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC-CCcc
Q psy1417 107 TS-TYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL-NQRS 160 (188)
Q Consensus 107 ~~-~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl-~~~~ 160 (188)
+. .+++.+|++++|+|+++..+++.. .|+..+.. .+.|+++ +||+|+ +.+.
T Consensus 250 ~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~~~~~ 303 (436)
T 2hjg_A 250 RALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE--AGKAVVIVVNKWDAVDKDE 303 (436)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSCCCT
T ss_pred HHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH--cCCcEEEEEECccCCCcch
Confidence 32 367889999999999998888776 47766664 3478777 999998 4344
No 131
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=122.57 Aligned_cols=116 Identities=16% Similarity=0.105 Sum_probs=72.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccc--eeeeeeEEEEEEeCCeEEEEEEEeCCCc-----------ccccccchh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYIT--TIGVDFKIRTIDVNGEKVKLQIWDTAGQ-----------ERFRTITST 109 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~l~D~~g~-----------~~~~~~~~~ 109 (188)
||+++|++|||||||+++|++..+.....+ +.........+.+++ ..+.+|||||. +.+......
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 108 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIRCILL 108 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999998877655444 344444445566666 45899999993 234444455
Q ss_pred ccccCCEEEEEEeCCChhh--HHHHHHHHHHHHhhCCCceEEE-EEcCCC-CCccc
Q psy1417 110 YYRGTHGVIVVYDVTSGET--FANVKRWLHEIENNCEVVNRIL-GLRLGL-NQRSI 161 (188)
Q Consensus 110 ~~~~~~~vilv~d~~~~~s--~~~~~~~~~~i~~~~~~~pilv-gnK~Dl-~~~~i 161 (188)
+++++|++++|+|++.... ...+..+...+... ...|++| +||+|+ ..+.+
T Consensus 109 ~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~ 163 (239)
T 3lxx_A 109 TSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER-ARSFMILIFTRKDDLGDTNL 163 (239)
T ss_dssp TTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH-HGGGEEEEEECGGGC-----
T ss_pred cCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh-ccceEEEEEeCCccCCcccH
Confidence 5677899999999875433 22222232222221 2257666 999997 43333
No 132
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.69 E-value=2.5e-17 Score=136.31 Aligned_cols=133 Identities=11% Similarity=0.063 Sum_probs=84.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCC-CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccc-------hhccccC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFS-GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTIT-------STYYRGT 114 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~-------~~~~~~~ 114 (188)
||+++|+.++|||||+++|.+..+. ....+....+.....+.+.+. ..+.+|||+|++.+.... ..+++.+
T Consensus 36 kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~a 114 (423)
T 3qq5_A 36 YIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRVFYRA 114 (423)
T ss_dssp EEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHHHhcC
Confidence 9999999999999999999877652 222233333444455555553 268999999998776442 3468889
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC-Cccchh-hhhhhcCCCCceEEeeccc
Q psy1417 115 HGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN-QRSIDE-VNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 115 ~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~-~~~i~~-~~~~~~~~~~~~~e~~~~~ 182 (188)
|++++|||++... ....|+.++.+. ++|+++ +||+|+. .+..+. .+++...+. .++++|.++
T Consensus 115 D~vllVvD~~~~~---~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~-~v~~vSAkt 179 (423)
T 3qq5_A 115 DCGILVTDSAPTP---YEDDVVNLFKEM--EIPFVVVVNKIDVLGEKAEELKGLYESRYEA-KVLLVSALQ 179 (423)
T ss_dssp SEEEEECSSSCCH---HHHHHHHHHHHT--TCCEEEECCCCTTTTCCCTHHHHHSSCCTTC-CCCCCSSCC
T ss_pred CEEEEEEeCCChH---HHHHHHHHHHhc--CCCEEEEEeCcCCCCccHHHHHHHHHHHcCC-CEEEEECCC
Confidence 9999999984333 335576666665 478777 9999994 333322 234444333 555665443
No 133
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.68 E-value=5.6e-16 Score=120.24 Aligned_cols=115 Identities=14% Similarity=0.066 Sum_probs=74.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC-CCCCccce-eeeeeEEEEEEeCCeEEEEEEEeCCCcccccccch-----------h
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT-FSGSYITT-IGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITS-----------T 109 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~-~~~~~~~t-~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~-----------~ 109 (188)
||+|+|++|||||||+++|++.. +...+.++ .........+.+++ ..+.+|||||...+..... .
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 101 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRCYLL 101 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999776 44444443 33334444555565 5699999999866533222 2
Q ss_pred ccccCCEEEEEEeCCChhh-HHHHHHHHHHHHhhC-CCceEEEEE-cCCCCCc
Q psy1417 110 YYRGTHGVIVVYDVTSGET-FANVKRWLHEIENNC-EVVNRILGL-RLGLNQR 159 (188)
Q Consensus 110 ~~~~~~~vilv~d~~~~~s-~~~~~~~~~~i~~~~-~~~pilvgn-K~Dl~~~ 159 (188)
+++.+|++++|+|+++... ...+..|+..+.... ...+++|+| |+|+...
T Consensus 102 ~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 102 SAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred cCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence 5788999999999986222 222334444432211 224455555 9998543
No 134
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.68 E-value=3.7e-17 Score=136.08 Aligned_cols=135 Identities=15% Similarity=0.105 Sum_probs=77.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcc--------cccccchhccccC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQE--------RFRTITSTYYRGT 114 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~--------~~~~~~~~~~~~~ 114 (188)
+|+++|++|||||||+++|.+..+. ...++.|................+.+|||+|.+ .+......+++.+
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 8999999999999999999876643 223444443322222333233569999999985 4556667788999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCccchhhhhhhcCCCCceEEeeccc
Q psy1417 115 HGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSIDEVNLCHRGSVDGSVESTSVD 182 (188)
Q Consensus 115 ~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~~~~~~~~~~~~~~~e~~~~~ 182 (188)
|++++|+|+++..+... .|+..+.+. .+.|+++ +||+|+........++. ..+...++++|..+
T Consensus 84 d~il~vvD~~~~~~~~d--~~~~~~l~~-~~~pvilv~NK~D~~~~~~~~~~~~-~lg~~~~~~iSA~~ 148 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAAD--EEVAKILYR-TKKPVVLAVNKLDNTEMRANIYDFY-SLGFGEPYPISGTH 148 (436)
T ss_dssp SEEEEEEETTTCSCHHH--HHHHHHHTT-CCSCEEEEEECCCC-----CCCSSG-GGSSCCCEECBTTT
T ss_pred CEEEEEEeCCCCCCHHH--HHHHHHHHH-cCCCEEEEEECccCccchhhHHHHH-HcCCCCeEEEeCcC
Confidence 99999999998766543 333333322 3577777 99999843221212222 34455667766543
No 135
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.68 E-value=4e-16 Score=126.69 Aligned_cols=134 Identities=13% Similarity=0.143 Sum_probs=89.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCcc--ceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccc---------cchhcc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYI--TTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT---------ITSTYY 111 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~---------~~~~~~ 111 (188)
+|+++|.+|||||||+++|.+..+..... .|.+ .....+..++ ..+.+|||+|...... ....+.
T Consensus 169 ~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 169 TVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRG--INVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp EEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSC--EEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeec--eeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 99999999999999999998765322111 2222 2223333343 5689999999754321 111234
Q ss_pred ccCCEEEEEEeCCChh--hHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC-ccchhh-hhhhcCCCCceEEeecc
Q psy1417 112 RGTHGVIVVYDVTSGE--TFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ-RSIDEV-NLCHRGSVDGSVESTSV 181 (188)
Q Consensus 112 ~~~~~vilv~d~~~~~--s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~-~~i~~~-~~~~~~~~~~~~e~~~~ 181 (188)
..+|++++|+|+++.. +++....|+..+....++.|+++ +||+|+.. ..+++. +.+...+ ..++++|..
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~iSA~ 318 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKG-LNPIKISAL 318 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTT-CCCEECBTT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcC-CCeEEEeCC
Confidence 4689999999999877 78888899999988666788877 99999943 333322 2333222 346666643
No 136
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.68 E-value=1.2e-16 Score=123.51 Aligned_cols=116 Identities=13% Similarity=0.067 Sum_probs=70.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCccceeee--eeEEEEEEeCCeEEEEEEEeCCCc--------ccccccchhcc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGV--DFKIRTIDVNGEKVKLQIWDTAGQ--------ERFRTITSTYY 111 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~l~l~D~~g~--------~~~~~~~~~~~ 111 (188)
+||+++|.+|||||||++++++........++.+. .........++ ..+.+|||||. +.+......++
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~~~~ 99 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERGHCY 99 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHHHHH
Confidence 39999999999999999999987754433222221 22233444555 56899999995 33332233333
Q ss_pred ----ccCCEEEEEEeCCChhh-HHHHHHHHHHHHh-hCCCceEEE-EEcCCCCCc
Q psy1417 112 ----RGTHGVIVVYDVTSGET-FANVKRWLHEIEN-NCEVVNRIL-GLRLGLNQR 159 (188)
Q Consensus 112 ----~~~~~vilv~d~~~~~s-~~~~~~~~~~i~~-~~~~~pilv-gnK~Dl~~~ 159 (188)
+.+|++++|+|+++... -..+.+|+..+.. ...+.|++| +||.|+...
T Consensus 100 ~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 100 LLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp HHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCC
Confidence 88999999999985211 1122234333321 112578877 999999543
No 137
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.67 E-value=1.4e-16 Score=124.54 Aligned_cols=110 Identities=15% Similarity=0.037 Sum_probs=74.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeee--EEEEEEeCCeEEEEEEEeCCCcccccccchh---------cc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDF--KIRTIDVNGEKVKLQIWDTAGQERFRTITST---------YY 111 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~---------~~ 111 (188)
||+++|.+|+|||||+++|++..+... .++.+... ....+..+ .+.+.+|||||...+...... ..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 117 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGERVVSI-SPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSFLLD 117 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCSCC-CSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccc-cCCCCcceeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHHhhc
Confidence 999999999999999999997765221 11122222 22233333 367999999998776533221 13
Q ss_pred ccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhCC-C--ceEEE-EEcCCC
Q psy1417 112 RGTHGVIVVYDVTSGETFANV-KRWLHEIENNCE-V--VNRIL-GLRLGL 156 (188)
Q Consensus 112 ~~~~~vilv~d~~~~~s~~~~-~~~~~~i~~~~~-~--~pilv-gnK~Dl 156 (188)
+.+|++++|+|++.. ++... ..|+..+.+.+. + .|+++ +||+|+
T Consensus 118 ~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl 166 (270)
T 1h65_A 118 KTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQF 166 (270)
T ss_dssp CEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSC
T ss_pred CCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECccc
Confidence 468999999998753 35443 468777776533 2 57776 999998
No 138
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.67 E-value=1.3e-16 Score=128.85 Aligned_cols=137 Identities=13% Similarity=0.167 Sum_probs=90.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCC-CCc-cceeeeeeEEEEEEeCCeEEEEEEEeCCCccc----ccccchhcc---cc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFS-GSY-ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER----FRTITSTYY---RG 113 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~-~~~-~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----~~~~~~~~~---~~ 113 (188)
+|+++|.++||||||+++|.+.+.. ..+ ..|...+.. .+.+++ ...+.+||+||... +..+...++ +.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g--~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~ 236 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG--MVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIER 236 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE--EEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE--EEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence 6889999999999999999876532 122 133332222 344443 24689999999532 333334444 45
Q ss_pred CCEEEEEEeCCC---hhhHHHHHHHHHHHHhhC---CCceEEE-EEcCCCCCccchhhhhhhcCCC-CceEEeeccc
Q psy1417 114 THGVIVVYDVTS---GETFANVKRWLHEIENNC---EVVNRIL-GLRLGLNQRSIDEVNLCHRGSV-DGSVESTSVD 182 (188)
Q Consensus 114 ~~~vilv~d~~~---~~s~~~~~~~~~~i~~~~---~~~pilv-gnK~Dl~~~~i~~~~~~~~~~~-~~~~e~~~~~ 182 (188)
++++++|+|+++ +.+++.+..|..++.... .+.|+++ +||+|+.......++++...+. ..++++|+++
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcCCCEEEEECCC
Confidence 999999999998 789999999999999865 3578776 9999984332222334443332 3456666543
No 139
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.66 E-value=4.3e-16 Score=133.92 Aligned_cols=137 Identities=19% Similarity=0.243 Sum_probs=88.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC--CCC-----Ccc------ceeeeeeEE--EEEEe---CCeEEEEEEEeCCCccccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT--FSG-----SYI------TTIGVDFKI--RTIDV---NGEKVKLQIWDTAGQERFR 104 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~--~~~-----~~~------~t~~~~~~~--~~~~~---~~~~~~l~l~D~~g~~~~~ 104 (188)
||+++|+.++|||||+++|+... ... .+. .+.|.++.. ..+.+ ++..+.+++|||||+..|.
T Consensus 6 nI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~ 85 (599)
T 3cb4_D 6 NFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFS 85 (599)
T ss_dssp EEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGGH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHH
Confidence 99999999999999999998521 110 000 112222221 22222 5667899999999999999
Q ss_pred ccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCccchh--hhhhhcCCC--CceEEee
Q psy1417 105 TITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSIDE--VNLCHRGSV--DGSVEST 179 (188)
Q Consensus 105 ~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~~--~~~~~~~~~--~~~~e~~ 179 (188)
......++.+|++++|+|+++..+.+....|...... ++|+++ +||+|+.....++ .++....+. ...+++|
T Consensus 86 ~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~---~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~vS 162 (599)
T 3cb4_D 86 YEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM---DLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCS 162 (599)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT---TCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEEEC
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC---CCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEEee
Confidence 8888899999999999999998888888888766543 478777 9999995433322 244444443 2466666
Q ss_pred ccc
Q psy1417 180 SVD 182 (188)
Q Consensus 180 ~~~ 182 (188)
.++
T Consensus 163 Akt 165 (599)
T 3cb4_D 163 AKT 165 (599)
T ss_dssp TTT
T ss_pred ccc
Confidence 544
No 140
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.66 E-value=1.8e-16 Score=127.58 Aligned_cols=69 Identities=13% Similarity=0.224 Sum_probs=61.9
Q ss_pred EEEEEEEeCCCcccccccchhccccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhh--CCCceEEE-EEcCC
Q psy1417 89 KVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVT----------SGETFANVKRWLHEIENN--CEVVNRIL-GLRLG 155 (188)
Q Consensus 89 ~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~----------~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~D 155 (188)
.+.+.+||++|+++++..|..++++++++|+|||++ +..++++...|+..+.+. .+++|++| |||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 478999999999999999999999999999999998 778899999988888763 36789888 99999
Q ss_pred CC
Q psy1417 156 LN 157 (188)
Q Consensus 156 l~ 157 (188)
+.
T Consensus 240 L~ 241 (340)
T 4fid_A 240 LF 241 (340)
T ss_dssp HH
T ss_pred hh
Confidence 84
No 141
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.66 E-value=2.6e-16 Score=131.70 Aligned_cols=138 Identities=16% Similarity=0.091 Sum_probs=87.7
Q ss_pred cccceeEEEEeCCCCCHHHHHHHHHhCCC-CCCccceeeeeeEEEEEEeCCeEEEEEEEeCCC----------ccccccc
Q psy1417 38 HIFSQKSSFLQLVGVGKSSLLIRFSDNTF-SGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAG----------QERFRTI 106 (188)
Q Consensus 38 ~~~~~ki~vvG~~~~GKssLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g----------~~~~~~~ 106 (188)
..+ ||+++|++++|||||+++|.+... .....++...+.....+..++. .+.+|||+| ++.|...
T Consensus 194 ~~~--ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 194 EVI--QFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp TCE--EEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccc--eeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 445 999999999999999999996542 2222333333444455666664 689999999 6666655
Q ss_pred ch-hccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC-CCccchhh---hhhhc----CCCCceE
Q psy1417 107 TS-TYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL-NQRSIDEV---NLCHR----GSVDGSV 176 (188)
Q Consensus 107 ~~-~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl-~~~~i~~~---~~~~~----~~~~~~~ 176 (188)
+. .+++.+|++++|+|+++..+- ....|+..+.. .+.|+++ +||+|+ ..+....+ +.+.+ .+...++
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 54 367889999999999885432 22345555554 3478777 999998 33443322 11211 1235567
Q ss_pred Eeeccc
Q psy1417 177 ESTSVD 182 (188)
Q Consensus 177 e~~~~~ 182 (188)
++|.++
T Consensus 347 ~~SA~~ 352 (456)
T 4dcu_A 347 FMSALT 352 (456)
T ss_dssp ECCTTT
T ss_pred EEcCCC
Confidence 777554
No 142
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.65 E-value=3e-16 Score=131.28 Aligned_cols=109 Identities=22% Similarity=0.218 Sum_probs=69.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCC-CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccc--------hhccc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFS-GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTIT--------STYYR 112 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~--------~~~~~ 112 (188)
+||+++|++|||||||+++|.+..+. ....++...++....+.+++ ..+.+|||+|...+.... ..+++
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~ 302 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAAN 302 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhhh
Confidence 38999999999999999999876432 22233333344444556676 458999999976543322 23578
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 113 GTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 113 ~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
.+|++++|+|+++..+... ..|+..+. ..|+++ +||+|+.
T Consensus 303 ~aD~vl~VvD~s~~~~~~~-~~i~~~l~----~~piivV~NK~Dl~ 343 (462)
T 3geh_A 303 TADLVLLTIDAATGWTTGD-QEIYEQVK----HRPLILVMNKIDLV 343 (462)
T ss_dssp SCSEEEEEEETTTCSCHHH-HHHHHHHT----TSCEEEEEECTTSS
T ss_pred cCCEEEEEeccCCCCCHHH-HHHHHhcc----CCcEEEEEECCCCC
Confidence 8999999999998766544 34544443 367776 9999983
No 143
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.65 E-value=1.6e-15 Score=130.31 Aligned_cols=137 Identities=19% Similarity=0.268 Sum_probs=90.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC--CCCC-----Cccc------eeeeeeE--EEEEEe---CCeEEEEEEEeCCCccccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN--TFSG-----SYIT------TIGVDFK--IRTIDV---NGEKVKLQIWDTAGQERFR 104 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~--~~~~-----~~~~------t~~~~~~--~~~~~~---~~~~~~l~l~D~~g~~~~~ 104 (188)
||+++|+.++|||||+++|+.. .+.. .+.. ..|.++. ...+.+ ++..+.+++|||||+..|.
T Consensus 8 nI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~ 87 (600)
T 2ywe_A 8 NFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFS 87 (600)
T ss_dssp EEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGGH
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHH
Confidence 9999999999999999999852 1111 0000 0111111 112222 4567899999999999998
Q ss_pred ccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCccchh--hhhhhcCCCC--ceEEee
Q psy1417 105 TITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSIDE--VNLCHRGSVD--GSVEST 179 (188)
Q Consensus 105 ~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~~--~~~~~~~~~~--~~~e~~ 179 (188)
......++.+|++++|+|+++..+.+....|..... .++|+++ +||+|+.....+. .++....+.. ..+++|
T Consensus 88 ~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi~vS 164 (600)
T 2ywe_A 88 YEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILAS 164 (600)
T ss_dssp HHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCEECB
T ss_pred HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---CCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEEEEE
Confidence 888888999999999999999988888888876554 2477777 9999995433332 2444444442 356666
Q ss_pred ccc
Q psy1417 180 SVD 182 (188)
Q Consensus 180 ~~~ 182 (188)
.++
T Consensus 165 Akt 167 (600)
T 2ywe_A 165 AKE 167 (600)
T ss_dssp TTT
T ss_pred eec
Confidence 543
No 144
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.64 E-value=3.8e-16 Score=131.31 Aligned_cols=133 Identities=20% Similarity=0.185 Sum_probs=88.0
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCC-CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcc-cccc--------cchhcc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFS-GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQE-RFRT--------ITSTYY 111 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~-~~~~--------~~~~~~ 111 (188)
+||+++|.+|||||||+++|.+.++. ....+....+.....+.+++ ..+.+|||+|.. .+.. ....++
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 39999999999999999999976532 22233333445555666776 558999999987 5532 123567
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCccchhhhhhhcCC-CCceEEeeccc
Q psy1417 112 RGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRSIDEVNLCHRGS-VDGSVESTSVD 182 (188)
Q Consensus 112 ~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~i~~~~~~~~~~-~~~~~e~~~~~ 182 (188)
+.+|++++|||+++..+++...- ++.+ .+.|+++ +||+|+... ++.++.....+ ...++++|.++
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~i-l~~l----~~~piivV~NK~DL~~~-~~~~~~~~~~~~~~~~i~iSAkt 388 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRKI-LERI----KNKRYLVVINKVDVVEK-INEEEIKNKLGTDRHMVKISALK 388 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHHH-HHHH----TTSSEEEEEEECSSCCC-CCHHHHHHHHTCSTTEEEEEGGG
T ss_pred hcccEEEEEecCCCCCCHHHHHH-HHHh----cCCCEEEEEECcccccc-cCHHHHHHHhcCCCcEEEEECCC
Confidence 89999999999998877766432 2333 3578777 999999432 22222222111 13567777554
No 145
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.63 E-value=4.1e-15 Score=123.87 Aligned_cols=114 Identities=15% Similarity=0.056 Sum_probs=75.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCC-------------------------------CCCCccceeeeeeEEEEEEeCCeEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNT-------------------------------FSGSYITTIGVDFKIRTIDVNGEKV 90 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~~~ 90 (188)
+||+++|..++|||||+++|+... ...+..+.+..+.....+..++ .
T Consensus 18 ~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~--~ 95 (439)
T 3j2k_7 18 VNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK--K 95 (439)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC--e
Confidence 399999999999999999996431 1111122333334434444444 5
Q ss_pred EEEEEeCCCcccccccchhccccCCEEEEEEeCCChhh---HHHHHHHHHHHHh-hCCCce-EEE-EEcCCCC
Q psy1417 91 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGET---FANVKRWLHEIEN-NCEVVN-RIL-GLRLGLN 157 (188)
Q Consensus 91 ~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s---~~~~~~~~~~i~~-~~~~~p-ilv-gnK~Dl~ 157 (188)
.+.+|||||+++|.......+..+|++++|+|+++... |+...++.+.+.. ...++| ++| +||+|+.
T Consensus 96 ~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 96 HFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDP 168 (439)
T ss_pred EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCc
Confidence 79999999999998888888999999999999998532 2211111111111 112355 666 9999983
No 146
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.63 E-value=6.1e-16 Score=130.31 Aligned_cols=114 Identities=17% Similarity=0.137 Sum_probs=73.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCC--CCC-----------------------------CccceeeeeeEEEEEEeCCeEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNT--FSG-----------------------------SYITTIGVDFKIRTIDVNGEKV 90 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~--~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 90 (188)
+||+++|+.++|||||+++|+... +.. +..+ |.........++...+
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~--GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERER--GVTVSICTSHFSTHRA 111 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------C--CSSCCCCEEEEECSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhc--CcceEeeeEEEecCCc
Confidence 499999999999999999997541 110 0111 2112112222333446
Q ss_pred EEEEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHH-----HHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 91 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANV-----KRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 91 ~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~-----~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
.+.+|||||+++|......+++.+|++++|+|+++.+++..+ ..+...+.......|++| +||+|+.
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~ 184 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 184 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGG
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcc
Confidence 799999999999998888899999999999999987544331 122222333333345666 9999983
No 147
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.62 E-value=2.4e-16 Score=131.90 Aligned_cols=111 Identities=17% Similarity=0.127 Sum_probs=72.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCC--------cccccccchhccccC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAG--------QERFRTITSTYYRGT 114 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g--------~~~~~~~~~~~~~~~ 114 (188)
+|+++|.+|||||||+++|.+..+. ...++.|.+........+.....+.+|||+| ++.+......+++.+
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 103 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 103 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhC
Confidence 9999999999999999999876643 2234445444444444444446799999999 667777778889999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 115 HGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 115 ~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
|++++|+|..+..+ ....|+..+.+. .+.|+++ +||+|+.
T Consensus 104 d~il~VvD~~~~~~--~~d~~l~~~l~~-~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 104 DVIIFMVNGREGVT--AADEEVAKILYR-TKKPVVLAVNKLDNT 144 (456)
T ss_dssp SEEEEEEESSSCSC--HHHHHHHHHHTT-CCSCEEEEEECC---
T ss_pred CEEEEEEeCCCCCC--hHHHHHHHHHHH-cCCCEEEEEECccch
Confidence 99999999876432 333344444333 3577776 9999984
No 148
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.62 E-value=9.7e-16 Score=120.07 Aligned_cols=113 Identities=18% Similarity=0.190 Sum_probs=70.6
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCC-CCCCc-------cceeeeeeEEEEEEeCCeEEEEEEEeCCCccc-------ccc
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNT-FSGSY-------ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER-------FRT 105 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~-~~~~~-------~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-------~~~ 105 (188)
.+||+++|.+|+|||||+++|+... +...+ .+|++.+.....+..++..+.+.+|||||... +..
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 4599999999999999999987554 33344 57777777666666667668999999999632 222
Q ss_pred cc-------hhccc-------------cCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 106 IT-------STYYR-------------GTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 106 ~~-------~~~~~-------------~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
.. ..++. ++|+++++++.+.......-..++..+.. .+|+++ +||+|+
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~ 156 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADT 156 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGG
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCC
Confidence 11 22222 36789999976653222222334455544 588877 999997
No 149
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.61 E-value=4.3e-16 Score=126.73 Aligned_cols=119 Identities=20% Similarity=0.322 Sum_probs=67.1
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCC-CCCCc--------cceeeeeeEEEEEEeCCeEEEEEEEeCCCc-------cccc
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNT-FSGSY--------ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQ-------ERFR 104 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~-~~~~~--------~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~-------~~~~ 104 (188)
.++|+|+|++|+|||||+++|.... +...+ .+|++..+....+..++..+.+++|||+|. +.+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 3599999999999999999987543 33222 245655554444555666788999999998 6666
Q ss_pred ccch-------hccccCCEE-----------EEEEeCCC-hhhHHHHH-HHHHHHHhhCCCceEEE-EEcCCC-CCccch
Q psy1417 105 TITS-------TYYRGTHGV-----------IVVYDVTS-GETFANVK-RWLHEIENNCEVVNRIL-GLRLGL-NQRSID 162 (188)
Q Consensus 105 ~~~~-------~~~~~~~~v-----------ilv~d~~~-~~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl-~~~~i~ 162 (188)
.+.. .+++.++++ +++|++++ ..++..+. .|+..+ ..++|+++ +||+|+ ..+.+.
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~ev~ 193 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKERE 193 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHHHH
Confidence 6654 555443332 35555554 45566655 454444 35678777 999998 334443
No 150
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.61 E-value=3.2e-17 Score=139.09 Aligned_cols=111 Identities=17% Similarity=0.168 Sum_probs=82.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
+|+++|+.++|||||+++|.+..+...+.++++.++....+..++ ...+.+|||||++.|..++..+++.+|++++|||
T Consensus 6 kV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVD 84 (537)
T 3izy_P 6 VVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVA 84 (537)
T ss_dssp BCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECB
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEEEEE
Confidence 899999999999999999997665544445544444333333321 2368999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 123 VTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
+++....+....| ..+.. .++|++| +||+|+.
T Consensus 85 a~dg~~~qt~e~l-~~~~~--~~vPiIVViNKiDl~ 117 (537)
T 3izy_P 85 ADDGVMKQTVESI-QHAKD--AHVPIVLAINKCDKA 117 (537)
T ss_dssp SSSCCCHHHHHHH-HHHHT--TTCCEEECCBSGGGT
T ss_pred CCCCccHHHHHHH-HHHHH--cCCcEEEEEeccccc
Confidence 9986655544433 22322 3478888 9999984
No 151
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.61 E-value=4.8e-16 Score=129.36 Aligned_cols=114 Identities=14% Similarity=0.129 Sum_probs=76.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC--CCCCCc-----------------------------cceeeeeeEEEEEEeCCeEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDN--TFSGSY-----------------------------ITTIGVDFKIRTIDVNGEKV 90 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~--~~~~~~-----------------------------~~t~~~~~~~~~~~~~~~~~ 90 (188)
+||+++|+.++|||||+++|+.. .+.... .+.+..+.....+ +...+
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~--~~~~~ 84 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF--ETKKY 84 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE--ECSSC
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEE--ecCCe
Confidence 39999999999999999999864 332110 1111111222223 33346
Q ss_pred EEEEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhh------CCCceEEE-EEcCCCCC
Q psy1417 91 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENN------CEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 91 ~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~------~~~~pilv-gnK~Dl~~ 158 (188)
.+.+|||||+++|......++..+|++++|+|+++ .+|+.+..|..+..++ ....|+++ +||+|+..
T Consensus 85 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 85 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred EEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence 79999999999998888888999999999999998 7788665444433332 12234655 99999843
No 152
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.61 E-value=1.2e-14 Score=119.94 Aligned_cols=110 Identities=16% Similarity=0.126 Sum_probs=75.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC---CCCCCccc--eeeeeeEEEEEEe-------------C--C----eEEEEEEEeC
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDN---TFSGSYIT--TIGVDFKIRTIDV-------------N--G----EKVKLQIWDT 97 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~---~~~~~~~~--t~~~~~~~~~~~~-------------~--~----~~~~l~l~D~ 97 (188)
+||+++|+.++|||||+++|.+. .+.++..+ |++..+....+.. + + ....+.+||+
T Consensus 9 ~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDt 88 (408)
T 1s0u_A 9 VNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDS 88 (408)
T ss_dssp EEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEEC
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEEC
Confidence 49999999999999999999843 33444444 6665555444321 1 1 1378999999
Q ss_pred CCcccccccchhccccCCEEEEEEeCCC----hhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 98 AGQERFRTITSTYYRGTHGVIVVYDVTS----GETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~vilv~d~~~----~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
||++.|.......+..+|++++|+|+++ .++++.+..| .. ....|+++ +||+|+
T Consensus 89 PGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~-l~~~~iivv~NK~Dl 147 (408)
T 1s0u_A 89 PGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EI-LGIDKIIIVQNKIDL 147 (408)
T ss_dssp SSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HH-TTCCCEEEEEECTTS
T ss_pred CCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HH-cCCCeEEEEEEccCC
Confidence 9999987776667788999999999995 4555555433 22 22246666 999998
No 153
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.60 E-value=1.2e-14 Score=119.84 Aligned_cols=115 Identities=15% Similarity=0.065 Sum_probs=80.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCc---cceeeeeeE---EEEE---------Ee---CCeEEEEEEEeCCCcccc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSY---ITTIGVDFK---IRTI---------DV---NGEKVKLQIWDTAGQERF 103 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~---~~t~~~~~~---~~~~---------~~---~~~~~~l~l~D~~g~~~~ 103 (188)
+||+++|+.++|||||+++|.+....... ..+.+.... ...+ .. ......+.+|||||++.|
T Consensus 9 ~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~~ 88 (403)
T 3sjy_A 9 VNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVL 88 (403)
T ss_dssp CEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcHHH
Confidence 39999999999999999999865332210 001000000 0000 00 112367999999999999
Q ss_pred cccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 104 RTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 104 ~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
.......+..+|++++|+|+++..++....+|+..+..... .|+++ +||+|+.
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~-~~iivviNK~Dl~ 142 (403)
T 3sjy_A 89 MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV-KNLIIVQNKVDVV 142 (403)
T ss_dssp HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC-CCEEEEEECGGGS
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC-CCEEEEEECcccc
Confidence 88888889999999999999988777777778776665432 46666 9999983
No 154
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.60 E-value=1.2e-14 Score=115.39 Aligned_cols=133 Identities=16% Similarity=0.028 Sum_probs=82.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCC-CccceeeeeeEEEEEEeCCeEEEEEEEeCCCcc---------cccccchhccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSG-SYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQE---------RFRTITSTYYR 112 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~---------~~~~~~~~~~~ 112 (188)
+|+++|++|||||||+++|++..+.. ...+..........+..++ ..+.+|||||.. .+......+++
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~ 87 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSSIG 87 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHHHHh
Confidence 89999999999999999999776421 1111111111112233343 578999999987 33444566788
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC--ccchh--hhhhhcCCCCceEEeecc
Q psy1417 113 GTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ--RSIDE--VNLCHRGSVDGSVESTSV 181 (188)
Q Consensus 113 ~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~--~~i~~--~~~~~~~~~~~~~e~~~~ 181 (188)
.+|++++|+|+++ +.....|+...... .+.|+++ +||+|+.. ..+.+ .++....+....+.+|..
T Consensus 88 ~~D~vl~Vvd~~~---~~~~~~~i~~~l~~-~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~ 157 (301)
T 1ega_A 88 DVELVIFVVEGTR---WTPDDEMVLNKLRE-GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE 157 (301)
T ss_dssp CEEEEEEEEETTC---CCHHHHHHHHHHHS-SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred cCCEEEEEEeCCC---CCHHHHHHHHHHHh-cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECC
Confidence 9999999999876 33334454433332 3477776 99999854 22211 134444454456666643
No 155
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.59 E-value=1.3e-14 Score=116.15 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=62.4
Q ss_pred EEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhh--CCCceE
Q psy1417 81 RTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVT----------SGETFANVKRWLHEIENN--CEVVNR 148 (188)
Q Consensus 81 ~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~----------~~~s~~~~~~~~~~i~~~--~~~~pi 148 (188)
..+.+++ +.+.+||++|+++++..|..++++++++|+|||++ +.+++++...|+..+.+. ..++|+
T Consensus 160 ~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~i 237 (327)
T 3ohm_A 160 YPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSV 237 (327)
T ss_dssp EEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEE
T ss_pred EEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceE
Confidence 3444554 78999999999999999999999999999999654 677888888888888763 367898
Q ss_pred EE-EEcCCC
Q psy1417 149 IL-GLRLGL 156 (188)
Q Consensus 149 lv-gnK~Dl 156 (188)
++ |||+|+
T Consensus 238 iL~~NK~DL 246 (327)
T 3ohm_A 238 ILFLNKKDL 246 (327)
T ss_dssp EEEEECHHH
T ss_pred EEEEECchh
Confidence 88 999998
No 156
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.58 E-value=1.3e-14 Score=118.09 Aligned_cols=112 Identities=18% Similarity=0.112 Sum_probs=75.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccc---------ccccchhcccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER---------FRTITSTYYRG 113 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~---------~~~~~~~~~~~ 113 (188)
.|+++|.+|||||||+++|.+..+.....+....+.....+.+++ ..+.+|||+|.-. +...++ .+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHh
Confidence 389999999999999999997765332222222234455667777 4579999999622 222333 4678
Q ss_pred CCEEEEEEeCCChh--hHHHHHHHHHHHHhhC-CCceEEE-EEcCCCC
Q psy1417 114 THGVIVVYDVTSGE--TFANVKRWLHEIENNC-EVVNRIL-GLRLGLN 157 (188)
Q Consensus 114 ~~~vilv~d~~~~~--s~~~~~~~~~~i~~~~-~~~pilv-gnK~Dl~ 157 (188)
+|++++|+|++++. ..+.+..|...+.... .+.|+++ +||+|+.
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~ 305 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKI 305 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGC
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCC
Confidence 99999999999876 5666666766666533 5678776 9999984
No 157
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.58 E-value=3.3e-15 Score=126.90 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=80.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC------------------CCC----CccceeeeeeEEEEEEeCCeEEEEEEEeCCCc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT------------------FSG----SYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQ 100 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~------------------~~~----~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 100 (188)
+|+|+|..++|||||+++|+... ..+ +..+.+........+.+.+ +.+++|||||+
T Consensus 15 ~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDTPG~ 92 (528)
T 3tr5_A 15 TFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDTPGH 92 (528)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECCCCS
T ss_pred EEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEECCCc
Confidence 99999999999999999996110 000 0001111122233444444 67999999999
Q ss_pred ccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC
Q psy1417 101 ERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 101 ~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~ 158 (188)
..|......+++.+|++++|+|+++..+.+...-|. .+... ++|+++ +||+|+..
T Consensus 93 ~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~~--~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 93 ADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRLR--HTPIMTFINKMDRDT 148 (528)
T ss_dssp TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHTT--TCCEEEEEECTTSCC
T ss_pred hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHHc--CCCEEEEEeCCCCcc
Confidence 999999999999999999999999987777766663 33333 478877 99999943
No 158
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.58 E-value=4.5e-15 Score=124.95 Aligned_cols=108 Identities=11% Similarity=0.123 Sum_probs=73.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCC-------CCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccC
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNT-------FSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGT 114 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~ 114 (188)
++|+++|..++|||||+++|.+.. +..+..+.+..+.....+.+++ ..+.+||+||++.|.......+..+
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~~a 97 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAADII 97 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred CEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHhhC
Confidence 499999999999999999998765 2223222222222222344455 6799999999999987777889999
Q ss_pred CEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 115 HGVIVVYDVTS---GETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 115 ~~vilv~d~~~---~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
|++++|+|+++ .++.+.+. .+... ++|+++ +||+|+.
T Consensus 98 D~~ilVvda~~g~~~qt~e~l~----~~~~~--~ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 98 DLALIVVDAKEGPKTQTGEHML----ILDHF--NIPIIVVITKSDNA 138 (482)
T ss_dssp CEEEEEEETTTCSCHHHHHHHH----HHHHT--TCCBCEEEECTTSS
T ss_pred CEEEEEEecCCCccHHHHHHHH----HHHHc--CCCEEEEEECCCcc
Confidence 99999999988 45554443 22222 366555 9999984
No 159
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.56 E-value=3.1e-15 Score=125.51 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=64.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHh--CCCCC-------------------------------CccceeeeeeEEEEEEeCCe
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSD--NTFSG-------------------------------SYITTIGVDFKIRTIDVNGE 88 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~--~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~~ 88 (188)
+||+++|+.++|||||+++|+. +.+.+ +...|++..+ ..+..++
T Consensus 44 ~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~--~~~~~~~- 120 (467)
T 1r5b_A 44 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGR--AYFETEH- 120 (467)
T ss_dssp EEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------C--CEEECSS-
T ss_pred eEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeee--EEEecCC-
Confidence 4999999999999999999974 22210 0112222221 2333343
Q ss_pred EEEEEEEeCCCcccccccchhccccCCEEEEEEeCCCh---hhHHHHHHHHHHHHh-hCCCce-EEE-EEcCCCC
Q psy1417 89 KVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSG---ETFANVKRWLHEIEN-NCEVVN-RIL-GLRLGLN 157 (188)
Q Consensus 89 ~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~---~s~~~~~~~~~~i~~-~~~~~p-ilv-gnK~Dl~ 157 (188)
..+.+|||||++.|.......+..+|++|+|+|+++. .+|+...+|.+.+.. ...++| ++| +||+|+.
T Consensus 121 -~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 121 -RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEP 194 (467)
T ss_dssp -EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTST
T ss_pred -eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCC
Confidence 6789999999999988888888999999999999986 344433333333332 123466 666 9999994
No 160
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.56 E-value=3.7e-15 Score=122.94 Aligned_cols=113 Identities=12% Similarity=0.105 Sum_probs=78.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC--------CCCCC-------ccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDN--------TFSGS-------YITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTI 106 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~--------~~~~~-------~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~ 106 (188)
+||+++|+.++|||||+++|.+. .+... ...+.|..+......++.....+.+|||||+++|...
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 91 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKN 91 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHHHH
Confidence 49999999999999999999862 22110 0011222222233333334467899999999999877
Q ss_pred chhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCce-EEE-EEcCCCC
Q psy1417 107 TSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVN-RIL-GLRLGLN 157 (188)
Q Consensus 107 ~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-ilv-gnK~Dl~ 157 (188)
....++.+|++++|+|+++.... ...+|+..+... ++| +++ +||+|+.
T Consensus 92 ~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~--~ip~iivviNK~Dl~ 141 (405)
T 2c78_A 92 MITGAAQMDGAILVVSAADGPMP-QTREHILLARQV--GVPYIVVFMNKVDMV 141 (405)
T ss_dssp HHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT--TCCCEEEEEECGGGC
T ss_pred HHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc--CCCEEEEEEECcccc
Confidence 77888999999999999886543 334555555543 467 655 9999984
No 161
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.56 E-value=3.4e-14 Score=117.34 Aligned_cols=111 Identities=20% Similarity=0.163 Sum_probs=77.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC---CCCCCccc--eeeeeeEEEEEEe-------------C--C----eEEEEEEEeC
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDN---TFSGSYIT--TIGVDFKIRTIDV-------------N--G----EKVKLQIWDT 97 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~---~~~~~~~~--t~~~~~~~~~~~~-------------~--~----~~~~l~l~D~ 97 (188)
+||+++|..++|||||+++|.+. .+.++..+ |+...+....+.. + + ....+.+||+
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDt 90 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA 90 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEEC
Confidence 49999999999999999999843 33444444 6655554443321 0 1 1378999999
Q ss_pred CCcccccccchhccccCCEEEEEEeCCC----hhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 98 AGQERFRTITSTYYRGTHGVIVVYDVTS----GETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~vilv~d~~~----~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
||++.|.......+..+|++++|+|+++ .++.+.+..| ... ...|+++ +||+|+.
T Consensus 91 PGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~-~~~~iivviNK~Dl~ 150 (410)
T 1kk1_A 91 PGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QII-GQKNIIIAQNKIELV 150 (410)
T ss_dssp SSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHH-TCCCEEEEEECGGGS
T ss_pred CChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHc-CCCcEEEEEECccCC
Confidence 9999987766667788999999999995 4555555433 222 1246666 9999984
No 162
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.56 E-value=9.2e-15 Score=130.27 Aligned_cols=111 Identities=19% Similarity=0.225 Sum_probs=82.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC------------CCCC----C--ccceeeeeeEEEEEE------------eCCeEEEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN------------TFSG----S--YITTIGVDFKIRTID------------VNGEKVKL 92 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~------------~~~~----~--~~~t~~~~~~~~~~~------------~~~~~~~l 92 (188)
||+|+|+.++|||||+++|+.. .+.+ + ...|+........+. .++..+.+
T Consensus 21 nI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i 100 (842)
T 1n0u_A 21 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLI 100 (842)
T ss_dssp EEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceE
Confidence 9999999999999999999853 1111 1 112333222222232 24457899
Q ss_pred EEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 93 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 93 ~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
++|||||+.+|......+++.+|++|+|||+++..+++....|..... .++|+++ +||+|+
T Consensus 101 ~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~~~p~ilviNK~D~ 162 (842)
T 1n0u_A 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG---ERIKPVVVINKVDR 162 (842)
T ss_dssp EEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH---TTCEEEEEEECHHH
T ss_pred EEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH---cCCCeEEEEECCCc
Confidence 999999999999999999999999999999999988888777754433 2477666 999998
No 163
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.55 E-value=1.3e-15 Score=128.29 Aligned_cols=107 Identities=16% Similarity=0.215 Sum_probs=76.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
+|+++|+.++|||||+++|....+.....+.+..+.....+.+++ ..+++|||||++.|..++...+..+|++++|||
T Consensus 6 ~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVd 83 (501)
T 1zo1_I 6 VVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVLVVA 83 (501)
T ss_dssp CEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEee
Confidence 999999999999999999987655433333222222222333344 458999999999999998888999999999999
Q ss_pred CCCh---hhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 123 VTSG---ETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 123 ~~~~---~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
+++. ++.+.+ ..+.. .++|+++ +||+|+.
T Consensus 84 a~~g~~~qT~e~l----~~~~~--~~vPiIVviNKiDl~ 116 (501)
T 1zo1_I 84 ADDGVMPQTIEAI----QHAKA--AQVPVVVAVNKIDKP 116 (501)
T ss_dssp TTTBSCTTTHHHH----HHHHH--TTCCEEEEEECSSSS
T ss_pred cccCccHHHHHHH----HHHHh--cCceEEEEEEecccc
Confidence 9874 444332 22222 3477777 9999994
No 164
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.55 E-value=7.8e-15 Score=120.69 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=75.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC-------CCCCC--c-----cceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDN-------TFSGS--Y-----ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTIT 107 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~-------~~~~~--~-----~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~ 107 (188)
+||+++|+.++|||||+++|... .+... . ....|.........++.....+.+|||||++.|....
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~ 83 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNM 83 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHHH
Confidence 49999999999999999999863 11110 0 0011212222222333344678999999999988777
Q ss_pred hhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCce-EEE-EEcCCCC
Q psy1417 108 STYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVN-RIL-GLRLGLN 157 (188)
Q Consensus 108 ~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-ilv-gnK~Dl~ 157 (188)
...++.+|++++|+|+++....+....| ..+... ++| +++ +||+|+.
T Consensus 84 ~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~--~vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 84 ITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI--GVEHVVVYVNKADAV 132 (397)
T ss_dssp HHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT--TCCCEEEEEECGGGC
T ss_pred HhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHc--CCCeEEEEEECcccC
Confidence 7889999999999999986544333333 333332 467 555 9999984
No 165
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.55 E-value=7.7e-15 Score=126.15 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=77.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCC----ccceeeeeeEEEEE------------EeCCeEEEEEEEeCCCccccccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGS----YITTIGVDFKIRTI------------DVNGEKVKLQIWDTAGQERFRTI 106 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~----~~~t~~~~~~~~~~------------~~~~~~~~l~l~D~~g~~~~~~~ 106 (188)
+|+++|+.++|||||+++|.+..+... ..++++..+..... ..+.....+++|||||++.|..+
T Consensus 7 ~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~ 86 (594)
T 1g7s_A 7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL 86 (594)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHHH
Confidence 999999999999999999987654321 22344433221100 00001125899999999999999
Q ss_pred chhccccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 107 TSTYYRGTHGVIVVYDVTS---GETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 107 ~~~~~~~~~~vilv~d~~~---~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
+...++.+|++++|||+++ +++++.+.. +.. .++|+++ +||+|+.
T Consensus 87 ~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~--~~vPiIVViNKiDl~ 135 (594)
T 1g7s_A 87 RKRGGALADLAILIVDINEGFKPQTQEALNI----LRM--YRTPFVVAANKIDRI 135 (594)
T ss_dssp BCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH--TTCCEEEEEECGGGS
T ss_pred HHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH--cCCeEEEEecccccc
Confidence 9989999999999999999 666665543 222 3478877 9999983
No 166
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.54 E-value=2.6e-14 Score=118.82 Aligned_cols=112 Identities=21% Similarity=0.187 Sum_probs=73.4
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCC--CCCC----------ccceee---------------------eeeEEEEEEeCCe
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNT--FSGS----------YITTIG---------------------VDFKIRTIDVNGE 88 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~--~~~~----------~~~t~~---------------------~~~~~~~~~~~~~ 88 (188)
+||+++|+.++|||||+++|+... +... ...+.+ .+.....+.. .
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~--~ 102 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST--A 102 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC--S
T ss_pred eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec--C
Confidence 399999999999999999998543 1110 011111 1111112222 3
Q ss_pred EEEEEEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 89 KVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 89 ~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
...+.+|||||++.|......++..+|++++|+|+++.... ....|+..+... ...|+++ +||+|+.
T Consensus 103 ~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~-~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL-GIKHIVVAINKMDLN 170 (434)
T ss_dssp SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT-TCCEEEEEEECTTTT
T ss_pred CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc-CCCeEEEEEEcCcCC
Confidence 36799999999999987777889999999999999986432 233444444333 2235666 9999994
No 167
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.53 E-value=6.1e-14 Score=116.75 Aligned_cols=109 Identities=23% Similarity=0.187 Sum_probs=69.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCC-CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccccc-----------c-hh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFS-GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTI-----------T-ST 109 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~-----------~-~~ 109 (188)
||+++|++|||||||+++|.+.... ....+....+.....+.+++. .+.+|||+|..+.... . ..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~ 259 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVD 259 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHHHHH
Confidence 9999999999999999999976531 111222222333345667775 4789999997433211 1 23
Q ss_pred ccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 110 YYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 110 ~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
+++.+|++++|+|+++..+.+.. .+...+.. .+.|+++ +||+|+
T Consensus 260 ~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--~~~~~ilv~NK~Dl 304 (439)
T 1mky_A 260 SIEKADVVVIVLDATQGITRQDQ-RMAGLMER--RGRASVVVFNKWDL 304 (439)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGG
T ss_pred HHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccC
Confidence 56789999999999987665542 22233332 3477777 999998
No 168
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.53 E-value=2.8e-14 Score=124.79 Aligned_cols=110 Identities=21% Similarity=0.227 Sum_probs=79.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC--CCC------C------------CccceeeeeeEEEEEEeCCeEEEEEEEeCCCccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN--TFS------G------------SYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER 102 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~--~~~------~------------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~ 102 (188)
||+++|..|+|||||+++|+.. .+. . +...|++.. ...+.+++ +.+++|||||+..
T Consensus 14 ~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~--~~~~~~~~--~~i~liDTPG~~d 89 (691)
T 1dar_A 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA--VTTCFWKD--HRINIIDTPGHVD 89 (691)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC--EEEEEETT--EEEEEECCCSSTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc--eEEEEECC--eEEEEEECcCccc
Confidence 9999999999999999999832 110 0 122333322 22334444 7799999999999
Q ss_pred ccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCc
Q psy1417 103 FRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQR 159 (188)
Q Consensus 103 ~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~ 159 (188)
|......+++.+|++++|+|+++..+++....|.. +.+. ++|+++ +||+|+...
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~--~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY--KVPRIAFANKMDKTGA 144 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT--TCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc--CCCEEEEEECCCcccC
Confidence 98888899999999999999999888887777754 3332 477776 999998443
No 169
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.52 E-value=2.2e-14 Score=121.97 Aligned_cols=111 Identities=12% Similarity=0.129 Sum_probs=73.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC--CCC---------------C---ccceeeeee--EEEEEEeCCeEEEEEEEeCCCc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT--FSG---------------S---YITTIGVDF--KIRTIDVNGEKVKLQIWDTAGQ 100 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~--~~~---------------~---~~~t~~~~~--~~~~~~~~~~~~~l~l~D~~g~ 100 (188)
||+++|..|+|||||+++|+... +.. + ..++.|..+ ....+.+++ +.+++|||||+
T Consensus 15 ~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liDTPG~ 92 (529)
T 2h5e_A 15 TFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLDTPGH 92 (529)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEECCCCS
T ss_pred EEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEECCCC
Confidence 99999999999999999998531 100 0 001112111 112233333 77999999999
Q ss_pred ccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC
Q psy1417 101 ERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 101 ~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~ 158 (188)
..|......+++.+|++++|+|+++...... ..++..+.. .++|+++ +||+|+..
T Consensus 93 ~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~--~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 93 EDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL--RDTPILTFMNKLDRDI 148 (529)
T ss_dssp TTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT--TTCCEEEEEECTTSCC
T ss_pred hhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH--cCCCEEEEEcCcCCcc
Confidence 9998888889999999999999988643322 222222222 3578777 99999943
No 170
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.52 E-value=2.5e-14 Score=112.76 Aligned_cols=112 Identities=20% Similarity=0.233 Sum_probs=70.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCC------cccee-----------------e---eee------------------
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGS------YITTI-----------------G---VDF------------------ 78 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~------~~~t~-----------------~---~~~------------------ 78 (188)
+|+|+|++|||||||+++|++..+.+. ..|+. | .++
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g~~ 107 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTN 107 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSST
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhcccC
Confidence 999999999999999999998876321 12320 0 000
Q ss_pred -----EEEEEEeCC-eEEEEEEEeCCCcc-------------cccccchhccccCCEEE-EEEeCCChhhHHHHHHHHHH
Q psy1417 79 -----KIRTIDVNG-EKVKLQIWDTAGQE-------------RFRTITSTYYRGTHGVI-VVYDVTSGETFANVKRWLHE 138 (188)
Q Consensus 79 -----~~~~~~~~~-~~~~l~l~D~~g~~-------------~~~~~~~~~~~~~~~vi-lv~d~~~~~s~~~~~~~~~~ 138 (188)
....+.+.+ ....+.+|||||.. .+......+++.+++++ +|+|+++..+......|+..
T Consensus 108 ~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~ 187 (299)
T 2aka_B 108 KGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKE 187 (299)
T ss_dssp TCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHH
T ss_pred CCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHH
Confidence 000000000 02569999999963 23445566777888666 79999876554444445555
Q ss_pred HHhhCCCceEEE-EEcCCC
Q psy1417 139 IENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 139 i~~~~~~~pilv-gnK~Dl 156 (188)
+.. .+.|+++ +||+|+
T Consensus 188 ~~~--~~~~~i~V~NK~Dl 204 (299)
T 2aka_B 188 VDP--QGQRTIGVITKLDL 204 (299)
T ss_dssp HCT--TCSSEEEEEECGGG
T ss_pred hCC--CCCeEEEEEEcccc
Confidence 543 3477776 999998
No 171
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.51 E-value=5.1e-14 Score=121.52 Aligned_cols=114 Identities=15% Similarity=0.111 Sum_probs=73.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCc-------------------------------cceeeeeeEEEEEEeCCeEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSY-------------------------------ITTIGVDFKIRTIDVNGEKV 90 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~-------------------------------~~t~~~~~~~~~~~~~~~~~ 90 (188)
+||+++|+.++|||||+++|+.....-.. .+.+..+.....+... .+
T Consensus 168 lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~--~~ 245 (611)
T 3izq_1 168 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH--RA 245 (611)
T ss_dssp CEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS--SC
T ss_pred eEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC--Cc
Confidence 49999999999999999999855321110 0111111222233333 36
Q ss_pred EEEEEeCCCcccccccchhccccCCEEEEEEeCCChh---hHHHHHHHHHH--HHhhCCCceEEE-EEcCCCC
Q psy1417 91 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGE---TFANVKRWLHE--IENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 91 ~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~---s~~~~~~~~~~--i~~~~~~~pilv-gnK~Dl~ 157 (188)
.+.+|||||+++|.......++.+|++|+|+|+++.. ++.....+... +.......|++| +||+|+.
T Consensus 246 ~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~ 318 (611)
T 3izq_1 246 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 318 (611)
T ss_dssp EEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTT
T ss_pred eEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 7999999999999888888899999999999998742 11111111111 222222344666 9999984
No 172
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.51 E-value=1.4e-13 Score=120.54 Aligned_cols=115 Identities=18% Similarity=0.117 Sum_probs=81.0
Q ss_pred CcccceeEEEEeCCCCCHHHHHHHHHhC--CCCC------------------CccceeeeeeEEEEEEeC-----CeEEE
Q psy1417 37 THIFSQKSSFLQLVGVGKSSLLIRFSDN--TFSG------------------SYITTIGVDFKIRTIDVN-----GEKVK 91 (188)
Q Consensus 37 ~~~~~~ki~vvG~~~~GKssLi~~l~~~--~~~~------------------~~~~t~~~~~~~~~~~~~-----~~~~~ 91 (188)
.+.. ||+|+|..++|||||+++|+.. .+.. +...|+.... ..+.++ +..+.
T Consensus 8 ~~~~--~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~ 83 (704)
T 2rdo_7 8 ARYR--NIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAA--TTAFWSGMAKQYEPHR 83 (704)
T ss_pred cccc--EEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeece--EEEEECCccccCCcee
Confidence 3445 9999999999999999999742 1111 0112222211 223322 34488
Q ss_pred EEEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC
Q psy1417 92 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 92 l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~ 158 (188)
+++|||||+.+|......+++.+|++|+|+|+++..+.+....|.. +.. .++|+++ +||+|+..
T Consensus 84 i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~--~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 84 INIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK--YKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH--cCCCEEEEEeCCCccc
Confidence 9999999999998888889999999999999998876666655533 322 2477766 99999843
No 173
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.50 E-value=1.5e-14 Score=121.09 Aligned_cols=110 Identities=15% Similarity=0.083 Sum_probs=74.2
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC--CCCC-------------------------------CccceeeeeeEEEEEEeCCe
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDN--TFSG-------------------------------SYITTIGVDFKIRTIDVNGE 88 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~~~~~ 88 (188)
+||+++|..++|||||+++|+.. .+.. +...|+...+ ..+..+
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~--~~~~~~-- 83 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIAL--WKFETP-- 83 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSC--EEEECS--
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEE--EEEecC--
Confidence 49999999999999999999853 2211 0112333222 233333
Q ss_pred EEEEEEEeCCCcccccccchhccccCCEEEEEEeCCChh---hHH---HHHHHHHHHHhhCCCce-EEE-EEcCCCC
Q psy1417 89 KVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGE---TFA---NVKRWLHEIENNCEVVN-RIL-GLRLGLN 157 (188)
Q Consensus 89 ~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~---s~~---~~~~~~~~i~~~~~~~p-ilv-gnK~Dl~ 157 (188)
.+.+.+|||||++.|.......+..+|++++|+|+++.. +|+ ....++..+... ++| ++| +||+|+.
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~--~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL--GVRQLIVAVNKMDSV 158 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT--TCCEEEEEEECGGGG
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc--CCCeEEEEEEccccc
Confidence 467999999999999888888899999999999999763 221 122222222222 354 666 9999984
No 174
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.50 E-value=1.2e-13 Score=120.87 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=81.1
Q ss_pred CcccceeEEEEeCCCCCHHHHHHHHHh--CCCCC------------------CccceeeeeeEEEEEEeCCeEEEEEEEe
Q psy1417 37 THIFSQKSSFLQLVGVGKSSLLIRFSD--NTFSG------------------SYITTIGVDFKIRTIDVNGEKVKLQIWD 96 (188)
Q Consensus 37 ~~~~~~ki~vvG~~~~GKssLi~~l~~--~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~l~l~D 96 (188)
.+.. +|+++|..|+|||||+++|+. +.+.. +...|+.. ....+.+++ +.+++||
T Consensus 8 ~~~~--~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~--~~~~~~~~~--~~i~liD 81 (693)
T 2xex_A 8 EKTR--NIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITS--AATTAAWEG--HRVNIID 81 (693)
T ss_dssp TTEE--EEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CC--SEEEEEETT--EEEEEEC
T ss_pred ccce--EEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEee--eeEEEEECC--eeEEEEE
Confidence 3445 999999999999999999984 22210 01112221 122344444 6799999
Q ss_pred CCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC
Q psy1417 97 TAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 97 ~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~ 158 (188)
|||+..|......+++.+|++++|+|+++..+.+....|.. +.+. ++|+++ +||+|+..
T Consensus 82 TPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~--~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 82 TPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY--GVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT--TCCEEEEEECTTSTT
T ss_pred CcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc--CCCEEEEEECCCccc
Confidence 99999998888889999999999999999887777766643 4433 477776 99999843
No 175
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.48 E-value=2.7e-14 Score=106.83 Aligned_cols=106 Identities=16% Similarity=0.220 Sum_probs=63.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccc----------ccccchhcc-
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER----------FRTITSTYY- 111 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----------~~~~~~~~~- 111 (188)
+|+++|++|||||||++++.+..+...+.++.|.......+.+++ .+.+||++|... +......++
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 104 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLE 104 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHHHHH
Confidence 899999999999999999987765555566666544333333333 478999999742 222222333
Q ss_pred --ccCCEEEEEEeCCChhhHHH--HHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 112 --RGTHGVIVVYDVTSGETFAN--VKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 112 --~~~~~vilv~d~~~~~s~~~--~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
..++++++|+|+++..+... +..|+.. .++|+++ +||+|+
T Consensus 105 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-----~~~~~~~v~nK~D~ 149 (210)
T 1pui_A 105 KRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-----SNIAVLVLLTKADK 149 (210)
T ss_dssp HCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGG
T ss_pred hhhcccEEEEEEECCCCCchhHHHHHHHHHH-----cCCCeEEEEecccC
Confidence 46889999999988655432 3344322 2477766 999997
No 176
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.48 E-value=4.3e-14 Score=115.24 Aligned_cols=100 Identities=10% Similarity=0.022 Sum_probs=73.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d 122 (188)
+|+++|..++|||||+++|+ +...|++..+ ..+..++ ..+.+|||||+++|.......++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~--~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITM--YNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEE--EEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeE--EEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 89999999999999999997 3334444333 2333333 569999999999997777777899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhCCCceE-EE-EE-cCCC
Q psy1417 123 VTSGETFANVKRWLHEIENNCEVVNR-IL-GL-RLGL 156 (188)
Q Consensus 123 ~~~~~s~~~~~~~~~~i~~~~~~~pi-lv-gn-K~Dl 156 (188)
+. ..+....+|+..+.... +|. ++ +| |+|+
T Consensus 93 -~~-g~~~qt~e~~~~~~~~~--i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLLG--FKHGIIALTRSDST 125 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHTT--CCEEEEEECCGGGS
T ss_pred -CC-CCcHHHHHHHHHHHHcC--CCeEEEEEEeccCC
Confidence 53 34555566666665543 444 44 88 9999
No 177
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.45 E-value=2.7e-13 Score=107.75 Aligned_cols=65 Identities=20% Similarity=0.302 Sum_probs=41.4
Q ss_pred EEEEEEeCCCccc-------------ccccchhccccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhCCCceEEE-EEcC
Q psy1417 90 VKLQIWDTAGQER-------------FRTITSTYYRGTHGVIVVYDVTSGE-TFANVKRWLHEIENNCEVVNRIL-GLRL 154 (188)
Q Consensus 90 ~~l~l~D~~g~~~-------------~~~~~~~~~~~~~~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~pilv-gnK~ 154 (188)
..+.+|||||... +......+++.+|++++|+|.++.. .-.....++..+.. .+.|+++ +||+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~ 208 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKL 208 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECT
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCc
Confidence 4689999999643 3445566788999999999974332 11111122233322 3477776 9999
Q ss_pred CC
Q psy1417 155 GL 156 (188)
Q Consensus 155 Dl 156 (188)
|+
T Consensus 209 Dl 210 (315)
T 1jwy_B 209 DL 210 (315)
T ss_dssp TS
T ss_pred cc
Confidence 98
No 178
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.45 E-value=8e-14 Score=126.08 Aligned_cols=114 Identities=13% Similarity=0.081 Sum_probs=75.2
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCC-------CCC-------CccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNT-------FSG-------SYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTI 106 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~-------~~~-------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~ 106 (188)
.+||+++|+.++|||||+++|.+.. +.. ....+.|.++....+.++.....+.+|||||++.|...
T Consensus 296 ~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~ 375 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKN 375 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHHH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHH
Confidence 3499999999999999999998631 100 01122232222222333444567999999999999877
Q ss_pred chhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCce-EEE-EEcCCCC
Q psy1417 107 TSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVN-RIL-GLRLGLN 157 (188)
Q Consensus 107 ~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-ilv-gnK~Dl~ 157 (188)
....++.+|++|+|+|+++....+ ..+|+..+... ++| ++| +||+|+.
T Consensus 376 mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l--gIP~IIVVINKiDLv 425 (1289)
T 3avx_A 376 MITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV--GVPYIIVFLNKCDMV 425 (1289)
T ss_dssp HHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH--TCSCEEEEEECCTTC
T ss_pred HHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc--CCCeEEEEEeecccc
Confidence 778899999999999999864332 23444444443 367 555 9999994
No 179
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.44 E-value=1.1e-13 Score=118.22 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=75.0
Q ss_pred cccceeEEEEeCCCCCHHHHHHHHHhCCCC---CCccceeeeeeEEEEEEeC-------------------------C--
Q psy1417 38 HIFSQKSSFLQLVGVGKSSLLIRFSDNTFS---GSYITTIGVDFKIRTIDVN-------------------------G-- 87 (188)
Q Consensus 38 ~~~~~ki~vvG~~~~GKssLi~~l~~~~~~---~~~~~t~~~~~~~~~~~~~-------------------------~-- 87 (188)
..+ +|+|+|..|+|||||+|+|++..+. ....++... . ..+..+ +
T Consensus 64 ~~~--~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~--~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~ 138 (550)
T 2qpt_A 64 GKP--MVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-F--VAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNT 138 (550)
T ss_dssp SCC--EEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-E--EEEECCSSSEEECCC------------------C
T ss_pred CCc--EEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-E--EEEEECCcccccCCceeeecCcccHHHHhhhccc
Confidence 445 9999999999999999999987753 222222110 0 000000 0
Q ss_pred ---e-E---------EEEEEEeCCCccc-----------ccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhC
Q psy1417 88 ---E-K---------VKLQIWDTAGQER-----------FRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNC 143 (188)
Q Consensus 88 ---~-~---------~~l~l~D~~g~~~-----------~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~ 143 (188)
+ . ..+.+|||||... +......++..+|++++|+|+++....+....|+..+...
T Consensus 139 ~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~- 217 (550)
T 2qpt_A 139 FLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH- 217 (550)
T ss_dssp CCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC-
T ss_pred ccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc-
Confidence 0 0 2589999999764 3344556678899999999998765555666676666543
Q ss_pred CCceEEE-EEcCCC
Q psy1417 144 EVVNRIL-GLRLGL 156 (188)
Q Consensus 144 ~~~pilv-gnK~Dl 156 (188)
+.|+++ +||+|+
T Consensus 218 -~~pvilVlNK~Dl 230 (550)
T 2qpt_A 218 -EDKIRVVLNKADM 230 (550)
T ss_dssp -GGGEEEEEECGGG
T ss_pred -CCCEEEEEECCCc
Confidence 366666 999998
No 180
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.43 E-value=2.4e-13 Score=118.50 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=77.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCC-------------Cccc---eeeeeeEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSG-------------SYIT---TIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTI 106 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~-------------~~~~---t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~ 106 (188)
+|+++|+.|+|||||+++|+...... ++.+ ..+..+......+....+.+++|||+|+..|...
T Consensus 11 ~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~~ 90 (665)
T 2dy1_A 11 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE 90 (665)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred EEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHHH
Confidence 89999999999999999998432211 0000 0111222222222223478999999999999888
Q ss_pred chhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 107 TSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 107 ~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
...+++.+|++++|+|+++....+.. .++..+... ++|+++ +||+|+.
T Consensus 91 ~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 91 IRGALEAADAALVAVSAEAGVQVGTE-RAWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHT--TCCEEEEEECGGGC
T ss_pred HHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHHc--cCCEEEEecCCchh
Confidence 88899999999999998876544333 444444443 477776 9999986
No 181
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.43 E-value=1.8e-14 Score=114.44 Aligned_cols=119 Identities=16% Similarity=0.116 Sum_probs=89.2
Q ss_pred HHHHHHHhCCCC-CCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEeCCChh-hHHHHH
Q psy1417 56 SLLIRFSDNTFS-GSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGE-TFANVK 133 (188)
Q Consensus 56 sLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~-s~~~~~ 133 (188)
+|+.++..+.|. +.+.||+|..+. ..+..++ .+.+||+ ++++..+++.+++++|++++|||++++. +++.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 588888888898 889999996554 3332222 6899999 8999999999999999999999999987 788899
Q ss_pred HHHHHHHhhCCCceEEE-EEcCCCC-Cccchh-hhhhhcCCC-CceEEeeccc
Q psy1417 134 RWLHEIENNCEVVNRIL-GLRLGLN-QRSIDE-VNLCHRGSV-DGSVESTSVD 182 (188)
Q Consensus 134 ~~~~~i~~~~~~~pilv-gnK~Dl~-~~~i~~-~~~~~~~~~-~~~~e~~~~~ 182 (188)
.|+..+.. .++|++| +||+|+. ++.+++ .+++...+. ..++++|.++
T Consensus 106 ~~l~~~~~--~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAkt 156 (301)
T 1u0l_A 106 KFLVLAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKT 156 (301)
T ss_dssp HHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTT
T ss_pred HHHHHHHH--CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCC
Confidence 99998765 3577776 9999994 344322 233333321 4677777554
No 182
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.43 E-value=4.8e-13 Score=108.60 Aligned_cols=112 Identities=12% Similarity=0.098 Sum_probs=70.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeee---e------------eE----------------------------
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGV---D------------FK---------------------------- 79 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~---~------------~~---------------------------- 79 (188)
+|+|+|+.|||||||+++|.+..+.+....++.. . +.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRET 115 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999987763332211100 0 00
Q ss_pred ---------EEEEEe-CCeEEEEEEEeCCCcccc-------------cccchhccccCCEEEEEEeCCChhhHHHHHHHH
Q psy1417 80 ---------IRTIDV-NGEKVKLQIWDTAGQERF-------------RTITSTYYRGTHGVIVVYDVTSGETFANVKRWL 136 (188)
Q Consensus 80 ---------~~~~~~-~~~~~~l~l~D~~g~~~~-------------~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~ 136 (188)
...+.+ ......+.+|||||...+ ......+++++|++++|+|.++..... ..|+
T Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~ 193 (360)
T 3t34_A 116 GRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAI 193 (360)
T ss_dssp CTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHH
T ss_pred CCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHH
Confidence 000000 011235899999998765 445567789999999999876543221 3344
Q ss_pred HHHHhhC-CCceEEE-EEcCCC
Q psy1417 137 HEIENNC-EVVNRIL-GLRLGL 156 (188)
Q Consensus 137 ~~i~~~~-~~~pilv-gnK~Dl 156 (188)
..+.... .+.|+++ +||+|+
T Consensus 194 ~l~~~~~~~~~~~i~V~nK~Dl 215 (360)
T 3t34_A 194 KISREVDPSGDRTFGVLTKIDL 215 (360)
T ss_dssp HHHHHSCTTCTTEEEEEECGGG
T ss_pred HHHHHhcccCCCEEEEEeCCcc
Confidence 4444433 2466666 999998
No 183
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.43 E-value=1.8e-14 Score=123.98 Aligned_cols=108 Identities=17% Similarity=0.115 Sum_probs=56.1
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCC-------------------------------CCCCccceeeeeeEEEEEEeCCeEE
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNT-------------------------------FSGSYITTIGVDFKIRTIDVNGEKV 90 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~~~ 90 (188)
+||+++|..++|||||+++|+... +..+..+.+..+.....+ .....
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~--~~~~~ 255 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTF--ESDKK 255 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEE--EeCCe
Confidence 499999999999999999996321 001111222222222222 22346
Q ss_pred EEEEEeCCCcccccccchhccccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHhhCCCce-EEE-EEcCCCC
Q psy1417 91 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSG----------ETFANVKRWLHEIENNCEVVN-RIL-GLRLGLN 157 (188)
Q Consensus 91 ~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~p-ilv-gnK~Dl~ 157 (188)
.+.||||||++.|.......+..+|++|+|+|+++. ++.+.+ ..+... ++| ++| +||+|+.
T Consensus 256 ~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l----~~~~~l--gip~iIvviNKiDl~ 328 (592)
T 3mca_A 256 IYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA----YLLRAL--GISEIVVSVNKLDLM 328 (592)
T ss_dssp ---CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH----HHHHHS--SCCCEEEEEECGGGG
T ss_pred EEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH----HHHHHc--CCCeEEEEEeccccc
Confidence 799999999999988888889999999999999853 222222 222222 244 665 9999983
No 184
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.41 E-value=1e-12 Score=107.91 Aligned_cols=74 Identities=20% Similarity=0.278 Sum_probs=66.2
Q ss_pred EEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhh--CCCceE
Q psy1417 81 RTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTS----------GETFANVKRWLHEIENN--CEVVNR 148 (188)
Q Consensus 81 ~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~----------~~s~~~~~~~~~~i~~~--~~~~pi 148 (188)
..+.+++ +.+.+||++|+++++..+..++++++++|+|||+++ ..+|+++..|+..+.+. .+++|+
T Consensus 210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi 287 (402)
T 1azs_C 210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 287 (402)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence 3455555 889999999999999999999999999999999999 89999999999999874 467898
Q ss_pred EE-EEcCCC
Q psy1417 149 IL-GLRLGL 156 (188)
Q Consensus 149 lv-gnK~Dl 156 (188)
+| |||+|+
T Consensus 288 iLvgNK~DL 296 (402)
T 1azs_C 288 ILFLNKQDL 296 (402)
T ss_dssp EEEEECHHH
T ss_pred EEEEEChhh
Confidence 88 999998
No 185
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.40 E-value=4.5e-13 Score=117.26 Aligned_cols=64 Identities=13% Similarity=0.164 Sum_probs=48.4
Q ss_pred EEEEEeCCCccc---ccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 91 KLQIWDTAGQER---FRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 91 ~l~l~D~~g~~~---~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
.+.+|||||... .......+++.+|++++|+|+++..+......|...+... +.|+++ +||+|+
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~--~~~iiiVlNK~Dl 242 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGR--GLTVFFLVNAWDQ 242 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTS--CCCEEEEEECGGG
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhh--CCCEEEEEECccc
Confidence 489999999654 2344456788999999999999888887777775555433 356666 999998
No 186
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.39 E-value=1.3e-12 Score=107.33 Aligned_cols=85 Identities=21% Similarity=0.173 Sum_probs=47.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCcc--ceeeeeeEEEEE-------------------EeCC-eEEEEEEEeCCC
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYI--TTIGVDFKIRTI-------------------DVNG-EKVKLQIWDTAG 99 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~--~t~~~~~~~~~~-------------------~~~~-~~~~l~l~D~~g 99 (188)
+||+++|.+|||||||+++|.+........ .|.........+ .+++ ..+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 389999999999999999999765321111 122222221111 1232 247899999999
Q ss_pred ccc----ccccch---hccccCCEEEEEEeCCCh
Q psy1417 100 QER----FRTITS---TYYRGTHGVIVVYDVTSG 126 (188)
Q Consensus 100 ~~~----~~~~~~---~~~~~~~~vilv~d~~~~ 126 (188)
... ...+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 222222 346889999999999875
No 187
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.38 E-value=1.5e-13 Score=109.16 Aligned_cols=137 Identities=16% Similarity=0.182 Sum_probs=66.5
Q ss_pred cceeEEEEeCCCCCHHHHHHHHHhC-CCCCCc--------cceeeeeeEEEEEEeCCeEEEEEEEeCCCc-------ccc
Q psy1417 40 FSQKSSFLQLVGVGKSSLLIRFSDN-TFSGSY--------ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQ-------ERF 103 (188)
Q Consensus 40 ~~~ki~vvG~~~~GKssLi~~l~~~-~~~~~~--------~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~-------~~~ 103 (188)
++++|+++|++|||||||+++|.+. .++..+ .++.+.......+..++....+++||++|. +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4459999999999999999998764 444332 123222222222223444578999999997 445
Q ss_pred cccch-------hcccc-------------CCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC-Cccc
Q psy1417 104 RTITS-------TYYRG-------------THGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN-QRSI 161 (188)
Q Consensus 104 ~~~~~-------~~~~~-------------~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~-~~~i 161 (188)
..... .+++. ++++++..+.+. .+++.+.. ..+.+..+..|+++ +||+|+. .+.+
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l~~~~~iilV~~K~Dl~~~~e~ 173 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAIHNKVNIVPVIAKADTLTLKER 173 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHHTTTSCEEEEECCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHHHhcCCEEEEEEeCCCCCHHHH
Confidence 44443 33332 233444444322 23444331 33333345567766 9999983 3332
Q ss_pred h-----hhhhhhcCCCCceEEeec
Q psy1417 162 D-----EVNLCHRGSVDGSVESTS 180 (188)
Q Consensus 162 ~-----~~~~~~~~~~~~~~e~~~ 180 (188)
. ..+++...++ .+++++.
T Consensus 174 ~~~~~~~~~~~~~~~~-~~~e~Sa 196 (301)
T 2qnr_A 174 ERLKKRILDEIEEHNI-KIYHLPD 196 (301)
T ss_dssp HHHHHHHHHHHHHTTC-CCCCCC-
T ss_pred HHHHHHHHHHHHHcCC-eEEecCC
Confidence 2 1245555554 5666654
No 188
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.38 E-value=1e-12 Score=106.47 Aligned_cols=81 Identities=17% Similarity=0.243 Sum_probs=67.6
Q ss_pred ceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHh
Q psy1417 72 TTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTS----------GETFANVKRWLHEIEN 141 (188)
Q Consensus 72 ~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~----------~~s~~~~~~~~~~i~~ 141 (188)
+|+|.. ...+.+++ +.+.+||++|++.++..|..++++++++|+|||+++ ..++++...|+..+.+
T Consensus 179 ~T~Gi~--~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~ 254 (353)
T 1cip_A 179 KTTGIV--ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 254 (353)
T ss_dssp CCCSEE--EEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred ceeceE--EEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHc
Confidence 455543 34455554 789999999999999999999999999999999998 5679999999998887
Q ss_pred h--CCCceEEE-EEcCCC
Q psy1417 142 N--CEVVNRIL-GLRLGL 156 (188)
Q Consensus 142 ~--~~~~pilv-gnK~Dl 156 (188)
. ..++|++| |||+|+
T Consensus 255 ~~~~~~~piiLv~NK~DL 272 (353)
T 1cip_A 255 NKWFTDTSIILFLNKKDL 272 (353)
T ss_dssp CGGGTTSEEEEEEECHHH
T ss_pred CccccCCcEEEEEECcCc
Confidence 3 46789888 999998
No 189
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.36 E-value=1.2e-12 Score=105.98 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=61.1
Q ss_pred eEEEEEEEeCCCcccccccchhccccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhh--CCCceEEE-EEcC
Q psy1417 88 EKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVT----------SGETFANVKRWLHEIENN--CEVVNRIL-GLRL 154 (188)
Q Consensus 88 ~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~----------~~~s~~~~~~~~~~i~~~--~~~~pilv-gnK~ 154 (188)
..+.+.+||++|+++++..+..++++++++|+|||++ +.++|++...|+..+.+. .+++|++| |||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 6789999999999999999999999999999999998 788999999999998874 46789888 9999
Q ss_pred CC
Q psy1417 155 GL 156 (188)
Q Consensus 155 Dl 156 (188)
|+
T Consensus 261 DL 262 (354)
T 2xtz_A 261 DI 262 (354)
T ss_dssp HH
T ss_pred ch
Confidence 98
No 190
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.32 E-value=3.3e-12 Score=103.78 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=61.9
Q ss_pred ceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccccchhccccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHh
Q psy1417 72 TTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTS----------GETFANVKRWLHEIEN 141 (188)
Q Consensus 72 ~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~----------~~s~~~~~~~~~~i~~ 141 (188)
+|+|... ..+.+++ +.+.+||++|++.++..+..++++++++|+|||+++ ..++++...|+..+.+
T Consensus 187 ~T~Gi~~--~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~ 262 (362)
T 1zcb_A 187 PTKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN 262 (362)
T ss_dssp CCSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred CccceEE--EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc
Confidence 3455433 3455554 789999999999999999999999999999999999 7899999999999887
Q ss_pred h--CCCceEEE-EEcCCCC
Q psy1417 142 N--CEVVNRIL-GLRLGLN 157 (188)
Q Consensus 142 ~--~~~~pilv-gnK~Dl~ 157 (188)
. ..++|++| |||+|+.
T Consensus 263 ~~~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 263 NRVFSNVSIILFLNKTDLL 281 (362)
T ss_dssp CGGGTTSEEEEEEECHHHH
T ss_pred chhhCCCCEEEEEEChhhh
Confidence 4 46789888 9999983
No 191
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.32 E-value=5e-12 Score=104.46 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=65.9
Q ss_pred ccceeEEEEeCCCCCHHHHHHHHHhCCCCCC-c-------cceeeeeeEEEEEEeCCeEEEEEEEeCCCccccc------
Q psy1417 39 IFSQKSSFLQLVGVGKSSLLIRFSDNTFSGS-Y-------ITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR------ 104 (188)
Q Consensus 39 ~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~-~-------~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~------ 104 (188)
-++++|+|+|++|||||||++.|.+..+... + .++.+.......+...+....+++||++|...+.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 3455999999999999999999997765321 1 1233322221222223344579999999975431
Q ss_pred -c------------------cchhccccCCEEEEEEeCCCh-hhHHHHH-HHHHHHHhhCCCceEEE-EEcCCC-CCccc
Q psy1417 105 -T------------------ITSTYYRGTHGVIVVYDVTSG-ETFANVK-RWLHEIENNCEVVNRIL-GLRLGL-NQRSI 161 (188)
Q Consensus 105 -~------------------~~~~~~~~~~~vilv~d~~~~-~s~~~~~-~~~~~i~~~~~~~pilv-gnK~Dl-~~~~i 161 (188)
. ....++.++++.+++|..... .++..+. .|+..+. ..+|+++ +||+|+ ..+.+
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev 185 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEEC 185 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHH
Confidence 1 112345566655555555543 3555554 5766664 3577776 999998 43433
Q ss_pred h
Q psy1417 162 D 162 (188)
Q Consensus 162 ~ 162 (188)
.
T Consensus 186 ~ 186 (418)
T 2qag_C 186 Q 186 (418)
T ss_dssp H
T ss_pred H
Confidence 3
No 192
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.31 E-value=1.3e-11 Score=105.30 Aligned_cols=113 Identities=13% Similarity=0.067 Sum_probs=81.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC------------------C----CCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT------------------F----SGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQ 100 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~------------------~----~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 100 (188)
||+|+|..++|||||..+|+... + ..+....+........+.+++ +.++|.||||+
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH 110 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDTPGH 110 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECCCCG
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeCCCc
Confidence 89999999999999999997210 0 011111122222334455555 77999999999
Q ss_pred ccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCcc
Q psy1417 101 ERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRS 160 (188)
Q Consensus 101 ~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~ 160 (188)
..|.......++-+|++|+|+|+.....-+...-|... .+. ++|+++ .||+|.....
T Consensus 111 vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a-~~~--~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 111 QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVC-RMR--ATPVMTFVNKMDREALH 168 (548)
T ss_dssp GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHH-HHT--TCCEEEEEECTTSCCCC
T ss_pred HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHH-HHh--CCceEEEEecccchhcc
Confidence 99999999999999999999999998877777777443 333 277777 9999985443
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.27 E-value=3.3e-12 Score=103.46 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=23.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFS 67 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~ 67 (188)
+|+|+|+++||||||+++|++..+.
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred eEEEECCCCCCHHHHHHHHhCCCcC
Confidence 9999999999999999999987763
No 194
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.24 E-value=2.4e-11 Score=100.31 Aligned_cols=113 Identities=16% Similarity=0.199 Sum_probs=73.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCC-CCcc-ceeeeeeEEEEEEeCCeEEEEEEEeCCCccc----ccccchh---cccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFS-GSYI-TTIGVDFKIRTIDVNGEKVKLQIWDTAGQER----FRTITST---YYRG 113 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----~~~~~~~---~~~~ 113 (188)
.++++|++|||||||++.+.+.... ..+. .|.... .-.+.+++ ...+.+||++|... +..+... ..+.
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~--~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~er 235 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPN--LGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIAR 235 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCE--EEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecce--eeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHH
Confidence 5789999999999999999865321 1111 122211 12233333 24589999999632 1112111 2456
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhCC---CceEEE-EEcCCCCCc
Q psy1417 114 THGVIVVYDVTSGETFANVKRWLHEIENNCE---VVNRIL-GLRLGLNQR 159 (188)
Q Consensus 114 ~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~---~~pilv-gnK~Dl~~~ 159 (188)
++.++.++|++ ...+..+..|..++..... ..|.++ +||+|+...
T Consensus 236 a~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE 284 (416)
T ss_dssp SSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred HHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH
Confidence 99999999998 6678888888777776542 356655 999998543
No 195
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.18 E-value=4e-11 Score=97.20 Aligned_cols=82 Identities=18% Similarity=0.164 Sum_probs=54.8
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCCCCcc--ceeeeeeEEEEEEeCCe---------------EEEEEEEeCCCccccc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFSGSYI--TTIGVDFKIRTIDVNGE---------------KVKLQIWDTAGQERFR 104 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~---------------~~~l~l~D~~g~~~~~ 104 (188)
.+|+++|.+|||||||+++|.+..+..... .|++.+.. .+.+.+. ...+.+||++|..++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 489999999999999999999876432211 24433322 2333332 1569999999987652
Q ss_pred ----ccc---hhccccCCEEEEEEeCCC
Q psy1417 105 ----TIT---STYYRGTHGVIVVYDVTS 125 (188)
Q Consensus 105 ----~~~---~~~~~~~~~vilv~d~~~ 125 (188)
.+. -.+++.+|++++|+|+++
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 121 234789999999999986
No 196
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.18 E-value=1.2e-10 Score=102.25 Aligned_cols=117 Identities=19% Similarity=0.175 Sum_probs=81.2
Q ss_pred CcccceeEEEEeCCCCCHHHHHHHHHhC--------CCCC----------CccceeeeeeEEEEEEeCC-----eEEEEE
Q psy1417 37 THIFSQKSSFLQLVGVGKSSLLIRFSDN--------TFSG----------SYITTIGVDFKIRTIDVNG-----EKVKLQ 93 (188)
Q Consensus 37 ~~~~~~ki~vvG~~~~GKssLi~~l~~~--------~~~~----------~~~~t~~~~~~~~~~~~~~-----~~~~l~ 93 (188)
.++. ||+|+|.-++|||||..+|+.. +... +-...+........+.+.+ ..+.++
T Consensus 11 ~~IR--Ni~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN 88 (709)
T 4fn5_A 11 NRYR--NIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN 88 (709)
T ss_dssp GGEE--EEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred HHCe--EEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence 3445 9999999999999999999721 1110 1111111112223333322 358899
Q ss_pred EEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC
Q psy1417 94 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 94 l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~ 158 (188)
|.||||+..|.......++-+|++|+|+|+.....-+...-|....... +|+++ .||+|...
T Consensus 89 lIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~---lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 89 VIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYG---VPRIVYVNKMDRQG 151 (709)
T ss_dssp EECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHT---CCEEEEEECSSSTT
T ss_pred EEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcC---CCeEEEEccccccC
Confidence 9999999999999999999999999999999887777777776555544 66655 99999843
No 197
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.14 E-value=3.5e-11 Score=98.49 Aligned_cols=87 Identities=17% Similarity=0.180 Sum_probs=47.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCe---------------EEEEEEEeCCCcccccc--
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGE---------------KVKLQIWDTAGQERFRT-- 105 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~l~D~~g~~~~~~-- 105 (188)
+|.++|.+|||||||+++|.+..+.....|....+.....+.+.+. ...+.+||++|......
T Consensus 24 kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~ 103 (396)
T 2ohf_A 24 KIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNG 103 (396)
T ss_dssp CEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccchh
Confidence 9999999999999999999977553332232222222233333332 23589999999766432
Q ss_pred -----cchhccccCCEEEEEEeCCChhhH
Q psy1417 106 -----ITSTYYRGTHGVIVVYDVTSGETF 129 (188)
Q Consensus 106 -----~~~~~~~~~~~vilv~d~~~~~s~ 129 (188)
....+++.+|++++|+|+++.+++
T Consensus 104 ~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 104 QGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp ---CCHHHHHHHTSSSEEEEEEC------
T ss_pred hHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 334567899999999999865443
No 198
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.10 E-value=1.7e-10 Score=94.04 Aligned_cols=112 Identities=17% Similarity=0.128 Sum_probs=69.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcccccc----c---chhccccCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT----I---TSTYYRGTH 115 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~----~---~~~~~~~~~ 115 (188)
+|.+||.++||||||+|+|.+.+......|....+...-.+.+++ .++.+.|+||--.-.. . .-...+.+|
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad 151 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCN 151 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHHCS
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHhcC
Confidence 799999999999999999997653322223222233344556666 5588999999532111 1 112357899
Q ss_pred EEEEEEeCCChhh-HHHHHHHHHHHHhh-CCCceEEEEEcCCC
Q psy1417 116 GVIVVYDVTSGET-FANVKRWLHEIENN-CEVVNRILGLRLGL 156 (188)
Q Consensus 116 ~vilv~d~~~~~s-~~~~~~~~~~i~~~-~~~~pilvgnK~Dl 156 (188)
++++|+|++++.. ++.+...+...... ....++++.||.|.
T Consensus 152 ~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 152 LLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred ccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 9999999998643 22233333322221 22345566999996
No 199
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.05 E-value=3.3e-11 Score=104.59 Aligned_cols=115 Identities=16% Similarity=0.146 Sum_probs=78.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHh--CCCCC-----C------ccc---eeeeeeEEEEEEeCCeEEEEEEEeCCCccccccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD--NTFSG-----S------YIT---TIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTI 106 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~--~~~~~-----~------~~~---t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~ 106 (188)
||.|+|.-++|||||..+|+. +.... . +.+ .-|.........+....+.+++.||||+..|...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E 83 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE 83 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence 899999999999999999972 21110 0 000 0011122222222333467999999999999999
Q ss_pred chhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCCcc
Q psy1417 107 TSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQRS 160 (188)
Q Consensus 107 ~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~~~ 160 (188)
....++-+|++|+|+|+.....-+...-|....... +|.++ .||+|.....
T Consensus 84 v~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~---lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 84 VYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG---IPTIFFINKIDQNGID 135 (638)
T ss_dssp HHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHT---CSCEECCEECCSSSCC
T ss_pred HHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcC---CCeEEEEeccccccCC
Confidence 999999999999999999876666655564433333 67666 9999984433
No 200
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.99 E-value=1.7e-12 Score=98.20 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=29.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeee
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDF 78 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~ 78 (188)
+|+++|..|||||||+++|+...+...+.++++.++
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~ 75 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDV 75 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEET
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCC
Confidence 999999999999999999998766655566666554
No 201
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.95 E-value=6.4e-10 Score=83.59 Aligned_cols=104 Identities=18% Similarity=0.221 Sum_probs=57.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeee--------------EEEEEEe----------------CCeEEEE
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDF--------------KIRTIDV----------------NGEKVKL 92 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~--------------~~~~~~~----------------~~~~~~l 92 (188)
+|+++|..|||||||+++|............+..+. ....+.. ....+.+
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 111 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDCDL 111 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTCSE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCCCE
Confidence 899999999999999999986532211111111111 0011111 0123567
Q ss_pred EEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 93 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 93 ~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
.+|||+|+..... .+....+.+++|+|+++.... ...+.... ..|+++ +||+|+
T Consensus 112 iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~~~~-----~~~~iiv~NK~Dl 166 (221)
T 2wsm_A 112 LLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHPEIF-----RVADLIVINKVAL 166 (221)
T ss_dssp EEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCHHHH-----HTCSEEEEECGGG
T ss_pred EEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhhhhh-----hcCCEEEEecccC
Confidence 8999988511110 111256789999998765321 11222222 255555 999998
No 202
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.91 E-value=3.4e-09 Score=86.13 Aligned_cols=82 Identities=17% Similarity=0.184 Sum_probs=53.7
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhCCCC-CCcc-ceeeeeeEEEEEEeCC-------------------eEEEEEEEeCCCc
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDNTFS-GSYI-TTIGVDFKIRTIDVNG-------------------EKVKLQIWDTAGQ 100 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~~~~-~~~~-~t~~~~~~~~~~~~~~-------------------~~~~l~l~D~~g~ 100 (188)
++|+++|.+|||||||++++.+.... ..+. .|+..+.... .+.+ ....+.+||+||.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV--PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE--ecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 38999999999999999999865421 1111 1232222211 2211 2356999999998
Q ss_pred cccc----ccc---hhccccCCEEEEEEeCCC
Q psy1417 101 ERFR----TIT---STYYRGTHGVIVVYDVTS 125 (188)
Q Consensus 101 ~~~~----~~~---~~~~~~~~~vilv~d~~~ 125 (188)
.+.. .+. ...++.+|++++|+|+++
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 6642 121 224688999999999986
No 203
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.81 E-value=2.3e-08 Score=87.94 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=22.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTF 66 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~ 66 (188)
+|+|+|..++|||||++.|++..+
T Consensus 53 ~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 53 QIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp EEEEEECTTTCHHHHHHHHHSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCc
Confidence 999999999999999999998765
No 204
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.80 E-value=8.8e-10 Score=89.26 Aligned_cols=58 Identities=9% Similarity=0.094 Sum_probs=38.9
Q ss_pred EEEEEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 90 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 90 ~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
+.+.++||+|-.. ........+|++++|+|....+.++.+..+ ....|+++ +||+|+.
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~-------~~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG-------VLELADIVVVNKADGE 230 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT-------SGGGCSEEEEECCCGG
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh-------HhhcCCEEEEECCCCc
Confidence 6789999999422 223345889999999998776554333321 11246665 9999983
No 205
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.68 E-value=1.1e-08 Score=82.55 Aligned_cols=58 Identities=10% Similarity=0.130 Sum_probs=32.6
Q ss_pred EEEEEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 90 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 90 ~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
+.+.++||+|-.. ........+|++++|+|.+.....+.+... + . ..|.++ +||+|+.
T Consensus 167 ~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~~---i---l-~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 167 YDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKRG---I---I-EMADLVAVTKSDGD 225 (349)
T ss_dssp CSEEEEECCCC-----CHHHHHTTCSEEEEEECCC------------------C-CSCSEEEECCCSGG
T ss_pred CCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHHH---H---H-hcCCEEEEeeecCC
Confidence 4688999999421 123346789999999999875433222211 1 1 245554 9999983
No 206
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.66 E-value=5e-08 Score=79.85 Aligned_cols=83 Identities=17% Similarity=0.217 Sum_probs=53.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCC-CCCccceeeeeeEEEEEEeCCe---------------EEEEEEEeCCCcccc---
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTF-SGSYITTIGVDFKIRTIDVNGE---------------KVKLQIWDTAGQERF--- 103 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~l~D~~g~~~~--- 103 (188)
++.++|++|||||||++.|.+... .....|....+...-.+.+.+. ...+.+||++|....
T Consensus 22 ~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~ 101 (392)
T 1ni3_A 22 KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGAST 101 (392)
T ss_dssp EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcH
Confidence 899999999999999999998654 3222232121222223334431 135899999995332
Q ss_pred ----cccchhccccCCEEEEEEeCCC
Q psy1417 104 ----RTITSTYYRGTHGVIVVYDVTS 125 (188)
Q Consensus 104 ----~~~~~~~~~~~~~vilv~d~~~ 125 (188)
.......++.+|+++.|+|+.+
T Consensus 102 ~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 102 GVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp SSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1122334678999999999864
No 207
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.63 E-value=2.9e-08 Score=76.37 Aligned_cols=66 Identities=15% Similarity=-0.005 Sum_probs=38.5
Q ss_pred EEEEEEeCCCcccccccch------hccccCCEEEEEEeCCChhh---HHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 90 VKLQIWDTAGQERFRTITS------TYYRGTHGVIVVYDVTSGET---FANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 90 ~~l~l~D~~g~~~~~~~~~------~~~~~~~~vilv~d~~~~~s---~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
+.+.+|||+|......... ..+.. +++++++|.....+ +.....+..... ...+.|+++ +||+|+.
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPALNKVDLL 184 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEECCGGGC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh-cccCCCeEEEEeccccc
Confidence 5799999999866533221 24456 88899998764322 322222221111 112367766 9999983
No 208
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.60 E-value=9.8e-09 Score=82.65 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=34.8
Q ss_pred EEEEEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 90 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 90 ~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
+.+.++||+|...... ...+.+|++++|+|.+..+.++.+... .. +.|+++ +||+|+.
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~~----~~p~ivv~NK~Dl~ 207 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG---LM----EVADLIVINKDDGD 207 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH---HH----HHCSEEEECCCCTT
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh---hh----cccCEEEEECCCCC
Confidence 5799999999644322 246789999999998765433222111 11 255555 9999984
No 209
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.48 E-value=3e-07 Score=72.78 Aligned_cols=80 Identities=13% Similarity=0.104 Sum_probs=56.8
Q ss_pred cccccccchhccccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhCCCceEEE-EEcCCCC-Cccch---h-hhhhhcCCC
Q psy1417 100 QERFRTITSTYYRGTHGVIVVYDVTSGE-TFANVKRWLHEIENNCEVVNRIL-GLRLGLN-QRSID---E-VNLCHRGSV 172 (188)
Q Consensus 100 ~~~~~~~~~~~~~~~~~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~-~~~i~---~-~~~~~~~~~ 172 (188)
++++..+.+.+++++|++++|||++++. ++..+..|+..+.. .++|+++ +||+|+. ++.++ + .+.+...+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~ 143 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGY 143 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCC
Confidence 5777777788999999999999999886 89989999987765 3466655 9999983 33222 1 133334443
Q ss_pred CceEEeeccc
Q psy1417 173 DGSVESTSVD 182 (188)
Q Consensus 173 ~~~~e~~~~~ 182 (188)
..+++|.++
T Consensus 144 -~~~~~SA~~ 152 (302)
T 2yv5_A 144 -DVLKVSAKT 152 (302)
T ss_dssp -EEEECCTTT
T ss_pred -eEEEEECCC
Confidence 566666543
No 210
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.41 E-value=6.9e-07 Score=69.60 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.1
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhCC
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDNT 65 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~~ 65 (188)
+++++++|++|+|||||++.+.+..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4699999999999999999998643
No 211
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.34 E-value=4.2e-08 Score=78.85 Aligned_cols=57 Identities=14% Similarity=0.119 Sum_probs=32.9
Q ss_pred EEEEEEeCCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCce-EEEEEcCCC
Q psy1417 90 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVN-RILGLRLGL 156 (188)
Q Consensus 90 ~~l~l~D~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-ilvgnK~Dl 156 (188)
+.+.++||+|..... ......+|.+++++|....+..+.+..++.+ .+ +++.||+|+
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~-------~~~ivvlNK~Dl 205 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIFE-------LADMIAVNKADD 205 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHHH-------HCSEEEEECCST
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHHhc-------cccEEEEEchhc
Confidence 568999999963221 2235689999999998754332222222111 23 344899996
No 212
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.33 E-value=2.4e-07 Score=69.38 Aligned_cols=74 Identities=9% Similarity=0.011 Sum_probs=44.3
Q ss_pred CCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHh----h--CCCceEEE-EEcC-CCCCccchhhhhhh
Q psy1417 97 TAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIEN----N--CEVVNRIL-GLRL-GLNQRSIDEVNLCH 168 (188)
Q Consensus 97 ~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~----~--~~~~pilv-gnK~-Dl~~~~i~~~~~~~ 168 (188)
.+|++.++++|+.||+++|++|+|+|.++.+.++ .++.+.++.+ . ..++|++| +||. |++ ...+..++++
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp-~Ams~~EI~e 186 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV-KRMPCFYLAH 186 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS-CBCCHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc-CCCCHHHHHH
Confidence 4488999999999999999999999999886554 4433333322 1 24689999 9995 673 3334444444
Q ss_pred cCCC
Q psy1417 169 RGSV 172 (188)
Q Consensus 169 ~~~~ 172 (188)
..++
T Consensus 187 ~L~L 190 (227)
T 3l82_B 187 ELHL 190 (227)
T ss_dssp HTTG
T ss_pred HcCC
Confidence 4433
No 213
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.25 E-value=4.5e-07 Score=70.32 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=34.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER 102 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~ 102 (188)
+++++|.+|||||||+++|.+.... ...++.|.+.....+..+ ..+.+|||||...
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGKRAS-SVGAQPGITKGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred heEEeCCCCCCHHHHHHHHhccccc-ccCCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence 9999999999999999999966542 233444433322223222 2478999999653
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.23 E-value=5.8e-06 Score=68.24 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=21.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT 65 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~ 65 (188)
+++|+|++|+|||||++.|.+..
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 69999999999999999998654
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.21 E-value=4.3e-07 Score=73.82 Aligned_cols=108 Identities=12% Similarity=0.097 Sum_probs=58.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCC-----CccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccccc--------chh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSG-----SYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTI--------TST 109 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~--------~~~ 109 (188)
+++++|.+|+|||||+|.|.+..... ...+..|.......+.++.. +.++||||-.....+ ...
T Consensus 162 ~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~ 238 (368)
T 3h2y_A 162 DVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLKL 238 (368)
T ss_dssp CEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHHH
Confidence 79999999999999999998653111 11222233333334444332 789999995332211 111
Q ss_pred c--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 110 Y--YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 110 ~--~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
+ .+..+.++++++.....-+..+.. +..+ .....|+++ .||.|.
T Consensus 239 ~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l--~~~~~~~~~v~nk~d~ 285 (368)
T 3h2y_A 239 ITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYV--SGGRRAFTCHFSNRLT 285 (368)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTEE-EEEE--ESSSEEEEEEECTTSC
T ss_pred hccccccCceEEEEcCCCEEEEcceEE-EEEe--cCCCceEEEEecCccc
Confidence 1 245678888887642211111100 0111 123478877 999997
No 216
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.18 E-value=5e-07 Score=73.45 Aligned_cols=107 Identities=15% Similarity=0.113 Sum_probs=60.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC-----CCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccccc--------ccchh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN-----TFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR--------TITST 109 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~--------~~~~~ 109 (188)
+++++|.+|+|||||+|.|.+. ... ...+..|.......+..+.. +.++||||-.... .....
T Consensus 164 ~i~~vG~~nvGKStliN~L~~~~~~~~~~~-~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 164 DVYVVGCTNVGKSTFINRIIEEATGKGNVI-TTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHHTTCCC-EEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred cEEEEcCCCCchHHHHHHHHhhccCCccce-eecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 7999999999999999999865 111 11111222223334444332 7899999953221 11122
Q ss_pred cc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 110 YY--RGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 110 ~~--~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
++ +..+.++++++.....-+..+.. +..+ ...+.|+++ .||.|.
T Consensus 240 ~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l--~~~~~~~~~v~~k~d~ 286 (369)
T 3ec1_A 240 ITPKREIHPRVYQLNEGQTLFFGGLAR-LDYI--KGGRRSFVCYMANELT 286 (369)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTEE-EEEE--ESSSEEEEEEECTTSC
T ss_pred HhcccccCceEEEEcCCceEEECCEEE-EEEc--cCCCceEEEEecCCcc
Confidence 22 56788999988743211111110 0111 123478877 999997
No 217
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.18 E-value=1.6e-06 Score=67.89 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=32.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCcc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQE 101 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 101 (188)
+++++|.+|||||||+|++.+.... ...+..|.+.....+..+. .+.++||||-.
T Consensus 122 ~v~~vG~~nvGKSsliN~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 122 RALIIGIPNVGKSTLINRLAKKNIA-KTGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred eEEEEecCCCchHHHHHHHhcCcee-ecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 8999999999999999999866522 2222223222222222222 47899999953
No 218
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.13 E-value=1.3e-06 Score=68.36 Aligned_cols=74 Identities=8% Similarity=0.014 Sum_probs=48.6
Q ss_pred CCCcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHH---HHH-h--hCCCceEEE-EEc-CCCCCccchhhhhhh
Q psy1417 97 TAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLH---EIE-N--NCEVVNRIL-GLR-LGLNQRSIDEVNLCH 168 (188)
Q Consensus 97 ~~g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~---~i~-~--~~~~~pilv-gnK-~Dl~~~~i~~~~~~~ 168 (188)
.+|++..+.+|..||+++|++|+|+|.++.+.++ ..+.+. .+. . ...++|++| +|| .|++ ...+..++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp-~Ams~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV-KRMPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS-CBCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc-CCCCHHHHHH
Confidence 4688999999999999999999999999987655 332222 222 2 135789999 997 5874 2334444444
Q ss_pred cCCC
Q psy1417 169 RGSV 172 (188)
Q Consensus 169 ~~~~ 172 (188)
..++
T Consensus 272 ~L~L 275 (312)
T 3l2o_B 272 ELHL 275 (312)
T ss_dssp HTTG
T ss_pred HcCC
Confidence 4443
No 219
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.10 E-value=1.3e-06 Score=73.62 Aligned_cols=109 Identities=15% Similarity=0.239 Sum_probs=59.6
Q ss_pred eEEEEeCCCCCHHHHHHHHH------hCCCC----CCccce-----------eeeeeEEEEEE-------------eCCe
Q psy1417 43 KSSFLQLVGVGKSSLLIRFS------DNTFS----GSYITT-----------IGVDFKIRTID-------------VNGE 88 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~------~~~~~----~~~~~t-----------~~~~~~~~~~~-------------~~~~ 88 (188)
.|+++|.+||||||+++.|. +.+.. +.+.+. .+..+...... ....
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~~~ 182 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNE 182 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHHHC
Confidence 78999999999999999998 22110 000000 01111110000 0002
Q ss_pred EEEEEEEeCCCcccccc-cc---hhc--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCce--EEEEEcCCCC
Q psy1417 89 KVKLQIWDTAGQERFRT-IT---STY--YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVN--RILGLRLGLN 157 (188)
Q Consensus 89 ~~~l~l~D~~g~~~~~~-~~---~~~--~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~p--ilvgnK~Dl~ 157 (188)
.+.+.++||+|...... .. ... ...+|.+++|+|+......... ...+... +| .+|.||.|..
T Consensus 183 ~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~~~~---~~i~gvVlNK~D~~ 253 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAFKDK---VDVASVIVTKLDGH 253 (504)
T ss_dssp TCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHHHHH---HCCCCEEEECTTSC
T ss_pred CCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHHHhh---cCceEEEEeCCccc
Confidence 36799999999753211 11 111 1268999999998875432222 2223322 45 4559999984
No 220
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.93 E-value=3e-07 Score=76.96 Aligned_cols=99 Identities=14% Similarity=0.085 Sum_probs=59.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeeeeeEEEEEEeCCeEEEEEEEeCCCccc--ccccc--------hhccc
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER--FRTIT--------STYYR 112 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~--~~~~~--------~~~~~ 112 (188)
+|+++|.+|+||||+.++|...-. ....++.+.+.........+......+||..|.+. ....+ ..++.
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~-~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~ 119 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLS 119 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh-ccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999974321 11122222111000001111113346789888732 23222 44555
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhC
Q psy1417 113 GTHGVIVVYDVTSGETFANVKRWLHEIENNC 143 (188)
Q Consensus 113 ~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~ 143 (188)
..++.++|+|.++. +.+....|+..+.+..
T Consensus 120 ~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~ 149 (469)
T 1bif_A 120 EEGGHVAVFDATNT-TRERRAMIFNFGEQNG 149 (469)
T ss_dssp TTCCSEEEEESCCC-SHHHHHHHHHHHHHHT
T ss_pred hCCCCEEEEeCCCC-CHHHHHHHHHHHHhcC
Confidence 67888999999987 5777778877777654
No 221
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.71 E-value=7.6e-05 Score=61.81 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+++|.+||||||++..|..
T Consensus 101 vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999974
No 222
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.69 E-value=4.1e-05 Score=65.73 Aligned_cols=61 Identities=20% Similarity=0.171 Sum_probs=37.2
Q ss_pred cccceeEEEEeCCCCCHHHHHHHHHhCCCCCCc-----cceeeeeeEEEEEEe-CCeEEEEEEEeCCCccc
Q psy1417 38 HIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSY-----ITTIGVDFKIRTIDV-NGEKVKLQIWDTAGQER 102 (188)
Q Consensus 38 ~~~~~ki~vvG~~~~GKssLi~~l~~~~~~~~~-----~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~ 102 (188)
+.. .|+|+|.+|||||||+|+|.+....-.. ..|.|... +..++ ......+.++||||-..
T Consensus 37 ~~~--~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~--~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 37 PMV--VVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWM--WCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp BEE--EEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEE--EEEECSSSTTCEEEEEEECCBCC
T ss_pred CCc--EEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEE--eecccccCCCceEEEecCCCcCc
Confidence 445 8999999999999999999876521111 12222211 11111 11224588999999643
No 223
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.65 E-value=0.00013 Score=60.42 Aligned_cols=82 Identities=20% Similarity=0.170 Sum_probs=43.9
Q ss_pred EEEEEEeCCCccccccc----ch--hccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcCCCCCccchh
Q psy1417 90 VKLQIWDTAGQERFRTI----TS--TYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQRSIDE 163 (188)
Q Consensus 90 ~~l~l~D~~g~~~~~~~----~~--~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~Dl~~~~i~~ 163 (188)
+.+.+.||+|....... .. .....+|.+++|+|+...+..... ...+.... .+..+|.||.|...+.-..
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~~~-~i~gVIlTKlD~~~~gG~~ 258 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKEAT-PIGSIIVTKLDGSAKGGGA 258 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHSC-TTEEEEEECCSSCSSHHHH
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHhhC-CCeEEEEECCCCcccccHH
Confidence 67899999995332211 11 112347899999998875443222 23333322 2344669999985432222
Q ss_pred hhhhhcCCCCce
Q psy1417 164 VNLCHRGSVDGS 175 (188)
Q Consensus 164 ~~~~~~~~~~~~ 175 (188)
.......+....
T Consensus 259 ls~~~~~g~PI~ 270 (443)
T 3dm5_A 259 LSAVAATGAPIK 270 (443)
T ss_dssp HHHHHTTCCCEE
T ss_pred HHHHHHHCCCEE
Confidence 233334444443
No 224
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.55 E-value=4.6e-05 Score=61.82 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=44.2
Q ss_pred CcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 99 GQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 99 g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
.+++|...++.+++.++++++|+|+++.. ..|...+.+...+.|+++ +||+|+.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~ 109 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLI 109 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGS
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcC
Confidence 45788888888899999999999999853 457778887777788776 9999983
No 225
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.45 E-value=0.00034 Score=57.56 Aligned_cols=106 Identities=14% Similarity=0.151 Sum_probs=53.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCCCCCccceeee-ee--EEEEEEeCCeEEEEEEEeCCCcccccccchhc-----cccC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGV-DF--KIRTIDVNGEKVKLQIWDTAGQERFRTITSTY-----YRGT 114 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~~~~~~~t~~~-~~--~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~-----~~~~ 114 (188)
.+.++|++|||||||++.+.+-..+.+-.-+++. +. ...... ....-.+.+||++|-.........+ +...
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 6899999999999999999864322221111110 10 001111 1111147889999743211111111 2334
Q ss_pred CEEEEEEeCC--ChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCC
Q psy1417 115 HGVIVVYDVT--SGETFANVKRWLHEIENNCEVVNRIL-GLRLGL 156 (188)
Q Consensus 115 ~~vilv~d~~--~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl 156 (188)
+.+++ ++.. .++... +..+ +... +.|+++ .||.|+
T Consensus 150 ~~~~~-lS~G~~~kqrv~-la~a---L~~~--~~p~~lV~tkpdl 187 (413)
T 1tq4_A 150 DFFII-ISATRFKKNDID-IAKA---ISMM--KKEFYFVRTKVDS 187 (413)
T ss_dssp SEEEE-EESSCCCHHHHH-HHHH---HHHT--TCEEEEEECCHHH
T ss_pred CCeEE-eCCCCccHHHHH-HHHH---HHhc--CCCeEEEEecCcc
Confidence 55554 7766 333221 2222 2222 367766 999986
No 226
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.30 E-value=0.00068 Score=53.29 Aligned_cols=84 Identities=13% Similarity=0.126 Sum_probs=44.5
Q ss_pred EEEEEEEeCCCccc--ccc-cch-----hccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcCCCCCcc
Q psy1417 89 KVKLQIWDTAGQER--FRT-ITS-----TYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQRS 160 (188)
Q Consensus 89 ~~~l~l~D~~g~~~--~~~-~~~-----~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~Dl~~~~ 160 (188)
.+.+.+.||+|... ... ... .....+|.+++|+|...... .......+... -.+..+|.||.|...+.
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~~-~~i~gvVlnk~D~~~~~ 255 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQA-SKIGTIIITKMDGTAKG 255 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHHT-CTTEEEEEECGGGCTTH
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHhh-CCCCEEEEeCCCCCcch
Confidence 36789999999765 211 110 12346899999999875322 22222333332 12234559999974322
Q ss_pred chhhhhhhcCCCCceE
Q psy1417 161 IDEVNLCHRGSVDGSV 176 (188)
Q Consensus 161 i~~~~~~~~~~~~~~~ 176 (188)
-.........+....+
T Consensus 256 g~~~~~~~~~~~pi~~ 271 (297)
T 1j8m_F 256 GGALSAVAATGATIKF 271 (297)
T ss_dssp HHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHHCcCEEE
Confidence 1122344444544444
No 227
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.19 E-value=0.00015 Score=58.71 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=43.4
Q ss_pred CcccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 99 GQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 99 g~~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
.++.|...+..++++++++++|+|+++..+ .|.+++.+...+.|+++ +||+|+-
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DLl 111 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADLL 111 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGGS
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhcC
Confidence 478888888888899999999999999764 46677777666788776 9999983
No 228
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.18 E-value=0.00031 Score=52.04 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-|+++|++|||||||++.|...
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 6799999999999999999853
No 229
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.15 E-value=0.00026 Score=51.44 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
+++++|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
No 230
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.12 E-value=0.00055 Score=59.03 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=20.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT 65 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~ 65 (188)
.++|+|+.|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999998653
No 231
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.10 E-value=0.00029 Score=51.04 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++++|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5799999999999999999753
No 232
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.09 E-value=0.00013 Score=60.44 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=37.7
Q ss_pred EEEEEEEeCCCccc--cc----ccchhc--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcCCCCCc
Q psy1417 89 KVKLQIWDTAGQER--FR----TITSTY--YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQR 159 (188)
Q Consensus 89 ~~~l~l~D~~g~~~--~~----~~~~~~--~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~Dl~~~ 159 (188)
.+.+.+.||+|... .. ...... ....+.+++|+|....+.... ....+.... .+-.+|.||.|...+
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~~-~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQAS-PIGSVIITKMDGTAK 253 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHHC-SSEEEEEECGGGCSC
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhccc-CCcEEEEeccccccc
Confidence 36688999999643 11 111111 124589999999887544333 223333322 233456999997543
No 233
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.02 E-value=0.00037 Score=51.34 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.++++|++|||||||++.+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 679999999999999999975
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.98 E-value=0.00096 Score=55.40 Aligned_cols=21 Identities=24% Similarity=0.052 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|.|+|+.++|||+|+|+|++
T Consensus 69 vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 69 AVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 678999999999999999985
No 235
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.91 E-value=0.00056 Score=49.55 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=19.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|++|||||||++.+.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999754
No 236
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.90 E-value=0.00054 Score=49.78 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=18.9
Q ss_pred EEEEeCCCCCHHHHHHHHHhC
Q psy1417 44 SSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~~~ 64 (188)
++++|++|||||||++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999843
No 237
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.89 E-value=0.00057 Score=50.03 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++++|++|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4689999999999999999754
No 238
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.87 E-value=0.0006 Score=49.97 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=19.1
Q ss_pred EEEEeCCCCCHHHHHHHHHhC
Q psy1417 44 SSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~~~ 64 (188)
|+|+|++||||+||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 599999999999999999854
No 239
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.86 E-value=0.00063 Score=51.10 Aligned_cols=22 Identities=27% Similarity=0.226 Sum_probs=19.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++|+|++|||||||++.+.+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5689999999999999999864
No 240
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.85 E-value=0.00064 Score=50.25 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++++|++|||||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4689999999999999998754
No 241
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.81 E-value=0.00071 Score=50.58 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++|+|++|||||||++.+.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5699999999999999999763
No 242
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.80 E-value=0.00075 Score=49.98 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=19.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-|+++|++|||||||++.|...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4689999999999999999854
No 243
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.78 E-value=0.00058 Score=49.05 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=17.2
Q ss_pred eEEEEeCCCCCHHHHHHHHH
Q psy1417 43 KSSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~ 62 (188)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 36899999999999999643
No 244
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.71 E-value=0.001 Score=47.41 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=20.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT 65 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~ 65 (188)
-++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 56899999999999999998654
No 245
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.70 E-value=0.00098 Score=49.08 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|+++|++|||||||++.|..
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999975
No 246
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.68 E-value=0.00096 Score=49.31 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.+.|+|++|+|||||++.+.+
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998864
No 247
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.65 E-value=0.0011 Score=46.90 Aligned_cols=21 Identities=14% Similarity=-0.089 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+++|.+||||||+++.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 248
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.63 E-value=0.0012 Score=47.86 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=19.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-++++|++|||||||++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 468999999999999999974
No 249
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.63 E-value=0.0012 Score=46.93 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+++|.+||||||+++.|.+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 250
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.63 E-value=0.0012 Score=48.29 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.|+++|++||||||+++.|.+.
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6799999999999999999754
No 251
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.62 E-value=0.0012 Score=47.09 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+++|.+||||||+++.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999986
No 252
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.61 E-value=0.0012 Score=46.69 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=18.1
Q ss_pred eEEEEeCCCCCHHHHHHHH
Q psy1417 43 KSSFLQLVGVGKSSLLIRF 61 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l 61 (188)
-|+++|.+||||||+++.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 253
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.59 E-value=0.0011 Score=50.30 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++++|+.|||||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5689999999999999988643
No 254
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.55 E-value=0.0012 Score=49.56 Aligned_cols=22 Identities=32% Similarity=0.273 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++++|+.|||||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999988643
No 255
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.55 E-value=0.0014 Score=48.04 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=19.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+++|.+|||||||++.|.+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999999864
No 256
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.55 E-value=0.0014 Score=49.67 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=19.1
Q ss_pred eEEEEeCCCCCHHHHHHHHH
Q psy1417 43 KSSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~ 62 (188)
.|+|+|++|||||||++.+.
T Consensus 29 ~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999997
No 257
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.52 E-value=0.0015 Score=47.84 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.+.++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 579999999999999999874
No 258
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.51 E-value=0.0017 Score=47.61 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+++|.+||||||+.+.|..
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999863
No 259
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.51 E-value=0.0016 Score=47.73 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+|+|.+||||||+++.|..
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 260
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.51 E-value=0.0018 Score=46.64 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+|.|.+||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 261
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.49 E-value=0.0015 Score=49.65 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++++|+.|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998754
No 262
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.49 E-value=0.0017 Score=47.83 Aligned_cols=21 Identities=14% Similarity=0.109 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|.++|+.|||||||++.+.+
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 263
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.49 E-value=0.0017 Score=46.43 Aligned_cols=21 Identities=14% Similarity=0.053 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|+++|.+||||||+.+.|..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999975
No 264
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.47 E-value=0.0018 Score=47.07 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+++|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999974
No 265
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.43 E-value=0.0027 Score=45.87 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=20.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
+|+++|.+||||||+.+.|...
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999998754
No 266
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.42 E-value=0.0016 Score=50.26 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++++|+.|||||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999998744
No 267
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.42 E-value=0.0016 Score=49.41 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5689999999999999998643
No 268
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.41 E-value=0.002 Score=45.93 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=19.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+++|.+||||||+++.+..
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 269
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.41 E-value=0.0019 Score=49.76 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.++++|++|+|||||++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 579999999999999999874
No 270
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.41 E-value=0.0017 Score=48.63 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5689999999999999998644
No 271
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.40 E-value=0.0022 Score=46.95 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
+|+|+|..||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 789999999999999999875
No 272
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.40 E-value=0.002 Score=47.23 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=19.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|+++|++|+||||+++.+.+
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999999864
No 273
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.39 E-value=0.0016 Score=50.55 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++++|++|||||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5689999999999999998743
No 274
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.39 E-value=0.0021 Score=47.44 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
+|+|.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999963
No 275
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.38 E-value=0.0017 Score=49.83 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999998754
No 276
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.38 E-value=0.0023 Score=46.04 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+++|.+||||||+.+.|..
T Consensus 7 ~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999963
No 277
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.38 E-value=0.0022 Score=46.41 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++++|..|+|||||+++++..
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 6789999999999999999853
No 278
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.37 E-value=0.003 Score=45.56 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+++|.+||||||+++.|..
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 279
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.37 E-value=0.002 Score=49.24 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999998854
No 280
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.37 E-value=0.0018 Score=49.49 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998754
No 281
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.37 E-value=0.0022 Score=46.15 Aligned_cols=21 Identities=19% Similarity=0.105 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|++.|.+||||||+++.|..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 282
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.36 E-value=0.0022 Score=47.58 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-++++|++|+|||||++.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999975
No 283
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.36 E-value=0.002 Score=48.41 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=18.4
Q ss_pred eEEEEeCCCCCHHHHHHHHH
Q psy1417 43 KSSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~ 62 (188)
-++++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 56899999999999999887
No 284
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.36 E-value=0.0018 Score=49.17 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999998754
No 285
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.35 E-value=0.0023 Score=47.30 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
+|+|+|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999964
No 286
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.35 E-value=0.0018 Score=48.80 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999998744
No 287
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.35 E-value=0.0018 Score=50.09 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-+.++|++|||||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5689999999999999998753
No 288
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.34 E-value=0.002 Score=49.04 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998753
No 289
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.34 E-value=0.0017 Score=46.59 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.++++|++|+|||+|++.+.+
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999999874
No 290
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.34 E-value=0.0021 Score=49.64 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999998754
No 291
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.33 E-value=0.0019 Score=49.88 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4689999999999999998643
No 292
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.33 E-value=0.002 Score=52.01 Aligned_cols=23 Identities=43% Similarity=0.382 Sum_probs=20.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT 65 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~ 65 (188)
.++++|++|||||||++.|.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 57999999999999999998654
No 293
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.31 E-value=0.002 Score=49.34 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5689999999999999998643
No 294
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.31 E-value=0.0035 Score=45.83 Aligned_cols=21 Identities=19% Similarity=0.441 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+++|.+||||||+++.|..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999864
No 295
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.29 E-value=0.0017 Score=48.31 Aligned_cols=22 Identities=23% Similarity=0.078 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998754
No 296
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.29 E-value=0.0026 Score=45.44 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
+|+++|.+||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 297
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.28 E-value=0.0026 Score=47.23 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|.++|.+||||||+++.|..
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999864
No 298
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.28 E-value=0.0021 Score=49.47 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5689999999999999998753
No 299
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.28 E-value=0.0021 Score=49.41 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5689999999999999998754
No 300
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.28 E-value=0.0021 Score=49.80 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++|+|+.|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999998754
No 301
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.28 E-value=0.0039 Score=44.65 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+++|.+|+||||+++.|..
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHH
Confidence 689999999999999999863
No 302
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.28 E-value=0.0028 Score=45.53 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+++|.+||||||+++.|..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999963
No 303
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.28 E-value=0.0025 Score=50.27 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.++|+|++|+|||||++.|.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 679999999999999999874
No 304
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.27 E-value=0.0041 Score=45.38 Aligned_cols=21 Identities=19% Similarity=0.120 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|++.|.+||||||+++.|..
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999873
No 305
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.27 E-value=0.0057 Score=47.48 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=21.3
Q ss_pred CCcccceeEEEEeCCCCCHHHHHHHHH
Q psy1417 36 PTHIFSQKSSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 36 ~~~~~~~ki~vvG~~~~GKssLi~~l~ 62 (188)
+.... .|+|.|..||||||+++.|.
T Consensus 72 ~~~~~--iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 72 PSGLY--VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CTTCE--EEEEEECTTSCHHHHHHHHH
T ss_pred CCCCE--EEEEECCCCCCHHHHHHHHH
Confidence 33445 89999999999999999986
No 306
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.26 E-value=0.0045 Score=45.37 Aligned_cols=21 Identities=24% Similarity=0.088 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|++.|.+||||||+++.|..
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999864
No 307
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.24 E-value=0.0022 Score=49.88 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5689999999999999998754
No 308
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.24 E-value=0.0029 Score=46.97 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
+|+++|.+||||||+++.|..
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999864
No 309
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.23 E-value=0.0031 Score=46.68 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
+|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999964
No 310
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.23 E-value=0.0016 Score=48.85 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=14.6
Q ss_pred eEEEEeCCCCCHHHHHHHHH
Q psy1417 43 KSSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~ 62 (188)
-++++|++|||||||++.|.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999998
No 311
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.21 E-value=0.0024 Score=49.30 Aligned_cols=22 Identities=27% Similarity=0.138 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5689999999999999998744
No 312
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.21 E-value=0.0014 Score=47.30 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=19.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.+.|+|++|+|||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999743
No 313
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.21 E-value=0.0031 Score=46.83 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
+|+++|++||||+|.+.+|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 314
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.21 E-value=0.0021 Score=51.70 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHhC
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-+++|+|++|+|||||++.|.+-
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998753
No 315
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.20 E-value=0.0024 Score=48.94 Aligned_cols=22 Identities=32% Similarity=0.237 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999998754
No 316
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.19 E-value=0.0028 Score=50.10 Aligned_cols=21 Identities=24% Similarity=0.131 Sum_probs=19.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|.|+|++|||||||++.+.+
T Consensus 92 ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHh
Confidence 679999999999999998874
No 317
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.16 E-value=0.0039 Score=46.34 Aligned_cols=21 Identities=14% Similarity=0.003 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+|+|.+||||||+++.|..
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999863
No 318
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.14 E-value=0.003 Score=49.61 Aligned_cols=20 Identities=40% Similarity=0.502 Sum_probs=18.8
Q ss_pred eEEEEeCCCCCHHHHHHHHH
Q psy1417 43 KSSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~ 62 (188)
-++++|++|||||||++.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 56899999999999999998
No 319
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.13 E-value=0.0038 Score=45.66 Aligned_cols=21 Identities=33% Similarity=0.340 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|++.|.+||||||+++.|..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 320
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.13 E-value=0.0039 Score=45.69 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|.++|..||||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 321
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.11 E-value=0.0038 Score=46.61 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+++|.+||||||+++.|..
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999873
No 322
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.10 E-value=0.0037 Score=44.47 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.+++.|++|+|||+|++.+..
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 323
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.09 E-value=0.0038 Score=46.33 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+++|.+||||||+++.|..
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 324
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.08 E-value=0.0041 Score=43.90 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 325
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.08 E-value=0.0037 Score=49.01 Aligned_cols=23 Identities=43% Similarity=0.481 Sum_probs=20.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT 65 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~ 65 (188)
.++++|++|||||||++.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 56899999999999999997543
No 326
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.08 E-value=0.0033 Score=48.52 Aligned_cols=23 Identities=35% Similarity=0.325 Sum_probs=20.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT 65 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~ 65 (188)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999987543
No 327
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.06 E-value=0.0046 Score=46.39 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
+|+++|.+||||||+++.|..
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999864
No 328
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.06 E-value=0.0044 Score=44.62 Aligned_cols=21 Identities=24% Similarity=0.213 Sum_probs=19.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+++|.+||||||+.+.|..
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 329
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.06 E-value=0.0036 Score=47.80 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=18.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
No 330
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.05 E-value=0.0027 Score=49.50 Aligned_cols=55 Identities=13% Similarity=-0.020 Sum_probs=36.9
Q ss_pred eCCCcc-cccccchhccccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhCCCceEEE-EEcCCCC
Q psy1417 96 DTAGQE-RFRTITSTYYRGTHGVIVVYDVTSGETFA--NVKRWLHEIENNCEVVNRIL-GLRLGLN 157 (188)
Q Consensus 96 D~~g~~-~~~~~~~~~~~~~~~vilv~d~~~~~s~~--~~~~~~~~i~~~~~~~pilv-gnK~Dl~ 157 (188)
..||+. +........++.+|+++.|+|+.++.+.. .+..|+ .+.|+++ +||+|+.
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~ 63 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKA 63 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGS
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccC
Confidence 468875 34444556689999999999999987764 344443 4677666 9999994
No 331
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.04 E-value=0.0016 Score=47.97 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=18.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|+|+|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 479999999999999999863
No 332
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.03 E-value=0.0036 Score=48.97 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4689999999999999998643
No 333
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.01 E-value=0.0043 Score=44.81 Aligned_cols=21 Identities=14% Similarity=0.052 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+++|.+||||||+++.|..
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999863
No 334
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.01 E-value=0.004 Score=47.14 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|.|+|+.|||||||++.+.+
T Consensus 27 iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999999865
No 335
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.99 E-value=0.0051 Score=46.61 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
+|++.|.+||||||++++|..
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999964
No 336
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.99 E-value=0.0063 Score=43.84 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+++|.+|+||||+++.+..
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999863
No 337
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.98 E-value=0.0041 Score=50.16 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=19.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT 65 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~ 65 (188)
-++++|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 46899999999999999987543
No 338
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.98 E-value=0.0044 Score=44.80 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=19.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999974
No 339
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.98 E-value=0.0051 Score=45.11 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=19.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.|.++|.+|+||||+++.|.+.
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7899999999999999999753
No 340
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.97 E-value=0.0062 Score=47.45 Aligned_cols=21 Identities=24% Similarity=0.118 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|+++|++||||||+++.|..
T Consensus 35 livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 341
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.96 E-value=0.0048 Score=44.94 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=20.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.|++.|.+||||||+++.|...
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999999753
No 342
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.96 E-value=0.0042 Score=50.04 Aligned_cols=21 Identities=29% Similarity=0.238 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.++|+|++|+|||||++.+++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 579999999999999999874
No 343
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.95 E-value=0.0043 Score=48.86 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=18.7
Q ss_pred eEEEEeCCCCCHHHHHHHHH
Q psy1417 43 KSSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~ 62 (188)
-++++|++||||||+++.+.
T Consensus 104 vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 67899999999999999987
No 344
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.94 E-value=0.0048 Score=44.67 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+++|.+||||||+++.|..
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 345
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.92 E-value=0.0045 Score=48.67 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=18.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-++++|+.||||||+++.+.+
T Consensus 102 vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 568999999999999999873
No 346
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.92 E-value=0.005 Score=44.33 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-+.++|.+|+|||||+.++..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999974
No 347
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.92 E-value=0.007 Score=48.73 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=20.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|++|+|||||++.+.+-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999999854
No 348
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.91 E-value=0.0052 Score=45.87 Aligned_cols=21 Identities=19% Similarity=0.091 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 349
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.91 E-value=0.0012 Score=52.14 Aligned_cols=22 Identities=45% Similarity=0.531 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|++|||||||++.+.+.
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHhccc
Confidence 6799999999999999999754
No 350
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.90 E-value=0.0045 Score=49.85 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++++|++|||||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4689999999999999998754
No 351
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.89 E-value=0.0025 Score=50.30 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=18.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.++|+|+.|+|||||++.+.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 578999999999999998864
No 352
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.88 E-value=0.008 Score=43.11 Aligned_cols=21 Identities=19% Similarity=0.079 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|++.|.+||||||+++.|..
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 353
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.88 E-value=0.0034 Score=44.08 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998753
No 354
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.87 E-value=0.0049 Score=47.67 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.++++|++|+|||+|++.+.+
T Consensus 46 GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 479999999999999999975
No 355
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.87 E-value=0.0054 Score=44.13 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 356
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.86 E-value=0.0052 Score=45.45 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=18.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999973
No 357
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.86 E-value=0.005 Score=46.65 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|++|+|||+|++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999999753
No 358
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.86 E-value=0.0053 Score=43.43 Aligned_cols=21 Identities=10% Similarity=0.113 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 359
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.85 E-value=0.0048 Score=49.74 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 5689999999999999998754
No 360
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.85 E-value=0.0075 Score=47.14 Aligned_cols=20 Identities=30% Similarity=0.139 Sum_probs=18.6
Q ss_pred eEEEEeCCCCCHHHHHHHHH
Q psy1417 43 KSSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~ 62 (188)
.|.|+|.+|||||||++.|.
T Consensus 33 ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999875
No 361
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.85 E-value=0.0056 Score=44.90 Aligned_cols=21 Identities=14% Similarity=0.083 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|++.|.+||||||+++.|..
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999974
No 362
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.84 E-value=0.007 Score=43.93 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=20.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.|+|+|..||||||+.+.|...
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 7899999999999999999754
No 363
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.84 E-value=0.0056 Score=44.88 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=19.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|.++|..|+||||+++.+.+
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 364
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.83 E-value=0.0055 Score=43.98 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 365
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.83 E-value=0.005 Score=49.74 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 5689999999999999998754
No 366
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.83 E-value=0.0052 Score=47.02 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+++|.+||||||+++.|..
T Consensus 6 lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 367
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.82 E-value=0.0051 Score=49.73 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-+.++|++|||||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 4689999999999999988754
No 368
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.81 E-value=0.0058 Score=43.76 Aligned_cols=20 Identities=20% Similarity=0.134 Sum_probs=17.9
Q ss_pred EEEEeCCCCCHHHHHHHHHh
Q psy1417 44 SSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~~ 63 (188)
.+|+|+.|+|||||+..+..
T Consensus 29 ~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 48999999999999999863
No 369
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.81 E-value=0.0051 Score=49.98 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 4689999999999999998754
No 370
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.80 E-value=0.0054 Score=49.62 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.++|+|++|+|||||++.+.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 579999999999999999974
No 371
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.80 E-value=0.0036 Score=46.95 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-|++.|..||||||+++.+.+.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6799999999999999998753
No 372
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.80 E-value=0.0047 Score=49.19 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=19.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|++|+|||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998754
No 373
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.78 E-value=0.0054 Score=48.81 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=19.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-++++|++||||||+++.+.+
T Consensus 131 vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999999874
No 374
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.78 E-value=0.0061 Score=45.65 Aligned_cols=20 Identities=20% Similarity=0.142 Sum_probs=17.5
Q ss_pred EEEEeCCCCCHHHHHHHHHh
Q psy1417 44 SSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~~ 63 (188)
|+++|++||||+|.+.+|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999874
No 375
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.78 E-value=0.0054 Score=49.71 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 4689999999999999998754
No 376
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.76 E-value=0.013 Score=48.11 Aligned_cols=21 Identities=19% Similarity=0.214 Sum_probs=19.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|+++|.+||||||++++|..
T Consensus 260 lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999964
No 377
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.76 E-value=0.0055 Score=49.64 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++++|++|||||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 5689999999999999998754
No 378
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.75 E-value=0.0063 Score=49.11 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=20.7
Q ss_pred CcccceeEEEEeCCCCCHHHHHHHHH
Q psy1417 37 THIFSQKSSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 37 ~~~~~~ki~vvG~~~~GKssLi~~l~ 62 (188)
.+.. ||+++|.+|+|||||++++.
T Consensus 31 ~~~~--killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLV--KILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCE--EEEEECSTTSSHHHHHHHHH
T ss_pred cCcc--EEEEECCCCCcHHHHHHHHH
Confidence 3445 99999999999999999974
No 379
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.74 E-value=0.0061 Score=47.94 Aligned_cols=21 Identities=29% Similarity=0.173 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|.|+|+.|||||||++.|.+
T Consensus 82 iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999998875
No 380
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.72 E-value=0.0065 Score=46.30 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=19.1
Q ss_pred eEEEEeCCCCCHHHHHHHHH
Q psy1417 43 KSSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~ 62 (188)
.|.|+|+.||||||+++.|.
T Consensus 29 ~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999997
No 381
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.69 E-value=0.0065 Score=46.25 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+++|.+||||||+.+.|..
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999864
No 382
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.69 E-value=0.0069 Score=43.34 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+++|.+||||||+++.|..
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 383
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.68 E-value=0.0051 Score=43.66 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.+++.|++|+|||+|++.+..
T Consensus 45 ~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHH
Confidence 679999999999999999864
No 384
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.66 E-value=0.0049 Score=44.07 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=15.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|++.|.+||||||+.+.|..
T Consensus 7 ~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp EEEEECCC----CHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
No 385
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.66 E-value=0.0069 Score=47.04 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=18.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-++|+|++|+|||||+..+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 468999999999999999874
No 386
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.64 E-value=0.0078 Score=42.53 Aligned_cols=21 Identities=29% Similarity=0.388 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|++.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999864
No 387
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.64 E-value=0.0067 Score=49.91 Aligned_cols=22 Identities=23% Similarity=0.070 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++|+|++|+|||||++.+++-
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4799999999999999999753
No 388
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.63 E-value=0.0072 Score=44.79 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.+++.|++|+|||+|++.+..
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999874
No 389
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.60 E-value=0.0076 Score=44.26 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 569999999999999999986
No 390
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.59 E-value=0.0073 Score=46.51 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|++|+|||+|++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4799999999999999999753
No 391
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.59 E-value=0.0077 Score=44.39 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=18.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|+++|.+|+||||+++.|..
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999999863
No 392
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.58 E-value=0.0074 Score=48.68 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=19.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-++++|+.||||||+++.+.+
T Consensus 159 vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHh
Confidence 578999999999999999874
No 393
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.58 E-value=0.0074 Score=49.21 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=18.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.+.++|++|||||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 568999999999999998874
No 394
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.56 E-value=0.0073 Score=47.95 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5799999999999999999753
No 395
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.55 E-value=0.0044 Score=49.78 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++++|++|||||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 5689999999999999998754
No 396
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.55 E-value=0.0082 Score=45.16 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|++.|.+||||||+++.+..
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 397
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.54 E-value=0.0064 Score=48.06 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++|+|..|+|||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999865
No 398
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.54 E-value=0.012 Score=46.60 Aligned_cols=20 Identities=25% Similarity=0.140 Sum_probs=18.5
Q ss_pred eEEEEeCCCCCHHHHHHHHH
Q psy1417 43 KSSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~ 62 (188)
-|.|+|++|||||||++.|.
T Consensus 94 iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 67999999999999999885
No 399
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.52 E-value=0.0085 Score=45.83 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+++|..|+||||+.+.|..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999864
No 400
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.008 Score=50.08 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=19.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++|+|+.|||||||++.+.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6799999999999999998753
No 401
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.50 E-value=0.0085 Score=44.73 Aligned_cols=22 Identities=9% Similarity=0.147 Sum_probs=19.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5689999999999999999863
No 402
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.50 E-value=0.0086 Score=45.43 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.+++.|++|+|||+|++.+.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 403
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.47 E-value=0.0092 Score=43.92 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=18.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-+++.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999874
No 404
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.45 E-value=0.011 Score=43.74 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+|.|..||||||+++.|..
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999875
No 405
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.44 E-value=0.0083 Score=50.38 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=18.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-++|+|.+|||||||++.|.+
T Consensus 295 VI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHH
Confidence 578999999999999999873
No 406
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.41 E-value=0.011 Score=43.11 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.+++.|++|+|||+|+..+..
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999874
No 407
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.41 E-value=0.0099 Score=47.66 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT 65 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~ 65 (188)
++.++|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999998653
No 408
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.41 E-value=0.0098 Score=43.24 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=19.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999874
No 409
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.39 E-value=0.012 Score=49.67 Aligned_cols=22 Identities=14% Similarity=0.042 Sum_probs=19.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++|+|++||||||+++.+++-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999754
No 410
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.39 E-value=0.0093 Score=46.28 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 411
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=95.35 E-value=0.01 Score=47.74 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=19.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHH
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~ 62 (188)
.||+++|..++||||+++++.
T Consensus 10 ~k~lllG~~~sGKsT~~kq~~ 30 (354)
T 2xtz_A 10 RKLLLLGAGESGKSTIFKQIK 30 (354)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eeEEEECCCCCcHHHHHHHHH
Confidence 399999999999999999985
No 412
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.33 E-value=0.011 Score=41.39 Aligned_cols=19 Identities=37% Similarity=0.354 Sum_probs=17.2
Q ss_pred EEEEeCCCCCHHHHHHHHH
Q psy1417 44 SSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~ 62 (188)
.+|+|+.|+|||+|+..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3899999999999999985
No 413
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.32 E-value=0.0044 Score=49.84 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++++|++|||||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5689999999999999998754
No 414
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.30 E-value=0.032 Score=46.30 Aligned_cols=59 Identities=27% Similarity=0.242 Sum_probs=36.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHh------------------CCCCCC---ccceeeeeeEEEE--EE-eCCeEEEEEEEeCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD------------------NTFSGS---YITTIGVDFKIRT--ID-VNGEKVKLQIWDTA 98 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~------------------~~~~~~---~~~t~~~~~~~~~--~~-~~~~~~~l~l~D~~ 98 (188)
=|.|+|..++|||+|+|.|+. ..|... ..-|.|.-.+... +. .++....+.+.||.
T Consensus 69 vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDTE 148 (457)
T 4ido_A 69 AVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQ 148 (457)
T ss_dssp EEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEEC
T ss_pred EEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEecc
Confidence 567999999999999996541 123221 1224453322211 11 25677889999999
Q ss_pred Ccc
Q psy1417 99 GQE 101 (188)
Q Consensus 99 g~~ 101 (188)
|..
T Consensus 149 G~~ 151 (457)
T 4ido_A 149 GTF 151 (457)
T ss_dssp CBT
T ss_pred CCC
Confidence 854
No 415
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.28 E-value=0.013 Score=44.53 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|.|.|..||||||+.+.|..
T Consensus 24 iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 416
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.20 E-value=0.012 Score=45.25 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 568999999999999999874
No 417
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.18 E-value=0.07 Score=39.23 Aligned_cols=66 Identities=8% Similarity=-0.066 Sum_probs=45.0
Q ss_pred EEEEEEEeCCCc-ccccccchhccccCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEE-EEcCCCCC
Q psy1417 89 KVKLQIWDTAGQ-ERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL-GLRLGLNQ 158 (188)
Q Consensus 89 ~~~l~l~D~~g~-~~~~~~~~~~~~~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilv-gnK~Dl~~ 158 (188)
.+.+.+.|+++. ... .....+..+|.++++...+ ..++..+...+..+.+.. +.++.+ .|+.|...
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG-NNRFRILLTIIPPYP 134 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC-SSSEEEEECSBCCTT
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc-CCCEEEEEEecCCcc
Confidence 367899999875 322 3344677899999998754 566777777777776632 344544 99999643
No 418
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.13 E-value=0.014 Score=40.36 Aligned_cols=22 Identities=9% Similarity=-0.011 Sum_probs=20.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.|++.|++|+|||++++.+...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999754
No 419
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.08 E-value=0.015 Score=43.99 Aligned_cols=20 Identities=25% Similarity=0.194 Sum_probs=19.0
Q ss_pred eEEEEeCCCCCHHHHHHHHH
Q psy1417 43 KSSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~ 62 (188)
.|++.|++|+||||+.+.+.
T Consensus 11 ~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999986
No 420
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.04 E-value=0.014 Score=48.20 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=20.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNT 65 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~ 65 (188)
++.++|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 67899999999999999988653
No 421
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.02 E-value=0.014 Score=44.83 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=19.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.+++.|++|+|||+|++.+...
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 6899999999999999999743
No 422
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.02 E-value=0.014 Score=45.12 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.+++.|++|+|||++++.+..
T Consensus 56 ~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 789999999999999999975
No 423
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.01 E-value=0.013 Score=50.22 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6789999999999999998643
No 424
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.01 E-value=0.018 Score=42.16 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=20.8
Q ss_pred ceeEEEEeCCCCCHHHHHHHHHhC
Q psy1417 41 SQKSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 41 ~~ki~vvG~~~~GKssLi~~l~~~ 64 (188)
++.|.++|..||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 358899999999999999998743
No 425
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.99 E-value=0.015 Score=43.34 Aligned_cols=21 Identities=19% Similarity=0.053 Sum_probs=18.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-++++|++|+|||+|+.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999888863
No 426
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=94.97 E-value=0.015 Score=46.71 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=19.5
Q ss_pred eeEEEEeCCCCCHHHHHHHHH
Q psy1417 42 QKSSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 42 ~ki~vvG~~~~GKssLi~~l~ 62 (188)
+|++++|..+|||||+++++-
T Consensus 33 ~klLlLG~geSGKST~~KQmk 53 (353)
T 1cip_A 33 VKLLLLGAGESGKSTIVKQMK 53 (353)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEcCCCCCchhHHHHHH
Confidence 499999999999999999984
No 427
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.97 E-value=0.015 Score=43.92 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.+++.|++|+|||++++.+..
T Consensus 41 ~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 428
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.97 E-value=0.019 Score=48.66 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=19.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|+.|+|||||++.+.+-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6799999999999999998754
No 429
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.97 E-value=0.015 Score=42.97 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=20.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.|+|+|++|+|||+|+..|...
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999854
No 430
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.96 E-value=0.025 Score=43.84 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=18.2
Q ss_pred eEEEEeCCCCCHHHHHHHHH
Q psy1417 43 KSSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~ 62 (188)
.+++.|++|+|||++++.+.
T Consensus 69 ~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 68999999999999998665
No 431
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.94 E-value=0.015 Score=46.13 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.+++.|++|+|||+|++.+..
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999999874
No 432
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.90 E-value=0.014 Score=49.87 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998753
No 433
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.90 E-value=0.015 Score=48.68 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=19.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-++++|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 579999999999999999874
No 434
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.87 E-value=0.017 Score=45.17 Aligned_cols=83 Identities=13% Similarity=0.121 Sum_probs=42.9
Q ss_pred EEEEEEeCCCcccccc--c--chhccc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhCCCceEEEEEcCCCCCccchh
Q psy1417 90 VKLQIWDTAGQERFRT--I--TSTYYR--GTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQRSIDE 163 (188)
Q Consensus 90 ~~l~l~D~~g~~~~~~--~--~~~~~~--~~~~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~pilvgnK~Dl~~~~i~~ 163 (188)
+.+.+.||+|...... + ....+. ..+.+++|+|.+.. ...+..+...+.. -+.--+|.||.|...+.-.-
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~--l~~~giVltk~D~~~~~g~~ 258 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS--VPVNQYIFTKIDETTSLGSV 258 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS--SCCCEEEEECTTTCSCCHHH
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc--CCCCEEEEeCCCcccchhHH
Confidence 5689999998654321 1 111222 35678899987653 2334444333321 11233558999975432223
Q ss_pred hhhhhcCCCCceE
Q psy1417 164 VNLCHRGSVDGSV 176 (188)
Q Consensus 164 ~~~~~~~~~~~~~ 176 (188)
.......+....+
T Consensus 259 ~~~~~~~~~pi~~ 271 (296)
T 2px0_A 259 FNILAESKIGVGF 271 (296)
T ss_dssp HHHHHTCSCCCSE
T ss_pred HHHHHHHCcCEEE
Confidence 3444444544433
No 435
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.85 E-value=0.025 Score=44.01 Aligned_cols=21 Identities=19% Similarity=-0.113 Sum_probs=18.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-+++.|++|+|||+|++.+..
T Consensus 38 ~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 567789999999999999974
No 436
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.84 E-value=0.017 Score=46.92 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-++++|++|+|||||++.+.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 679999999999999999874
No 437
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.83 E-value=0.018 Score=46.02 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|+|+|++|||||+|...|..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999974
No 438
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.82 E-value=0.023 Score=42.59 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|.++|..|+||||+.+.|..
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999874
No 439
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.80 E-value=0.019 Score=45.45 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-|+|+|++|||||+|...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4689999999999999999754
No 440
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.79 E-value=0.018 Score=45.70 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+|+|++|||||||...|..
T Consensus 7 ~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 441
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.78 E-value=0.017 Score=45.30 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=19.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.+++.|++|+|||+|++.+..
T Consensus 39 ~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 579999999999999999874
No 442
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.77 E-value=0.018 Score=44.95 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.+++.|++|+|||+|++.+..
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999975
No 443
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.74 E-value=0.018 Score=46.45 Aligned_cols=19 Identities=37% Similarity=0.336 Sum_probs=17.2
Q ss_pred EEEEeCCCCCHHHHHHHHH
Q psy1417 44 SSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~ 62 (188)
.+|+|++|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3699999999999999886
No 444
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.71 E-value=0.021 Score=48.50 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-+.++|+.|+|||||++.+.+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4689999999999999998754
No 445
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.68 E-value=0.02 Score=45.80 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|+|+|++|||||||...|..
T Consensus 9 lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHH
Confidence 579999999999999999974
No 446
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.67 E-value=0.02 Score=44.28 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.+++.|++|+|||++++.+..
T Consensus 52 ~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 447
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.64 E-value=0.022 Score=41.40 Aligned_cols=21 Identities=24% Similarity=0.139 Sum_probs=19.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|.|.|..||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999864
No 448
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.60 E-value=0.017 Score=45.75 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=19.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.+++.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 379999999999999999875
No 449
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.60 E-value=0.02 Score=45.64 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++|.|++|+|||+|++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999998754
No 450
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.58 E-value=0.026 Score=48.63 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-+.++|++|+|||||++.+.+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5699999999999999998753
No 451
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.58 E-value=0.022 Score=44.98 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-|+|+|++|||||+|...+...
T Consensus 12 ~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 4689999999999999999743
No 452
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.58 E-value=0.021 Score=44.90 Aligned_cols=20 Identities=15% Similarity=0.213 Sum_probs=18.4
Q ss_pred eEEEEeCCCCCHHHHHHHHH
Q psy1417 43 KSSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~ 62 (188)
-|+++|++|+||||++..+.
T Consensus 106 vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHH
Confidence 57899999999999999986
No 453
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.56 E-value=0.022 Score=43.52 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=19.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.+++.|++|+|||+|++.+...
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 7899999999999999999753
No 454
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=94.55 E-value=0.025 Score=46.21 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=21.0
Q ss_pred CcccceeEEEEeCCCCCHHHHHHHHH
Q psy1417 37 THIFSQKSSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 37 ~~~~~~ki~vvG~~~~GKssLi~~l~ 62 (188)
.+.+ |++++|...|||||+++++-
T Consensus 38 ~~~~--klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 38 RATH--RLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp TTEE--EEEEEESTTSSHHHHHHHHH
T ss_pred hccc--eEEEecCCCCchhhHHHHHH
Confidence 4445 99999999999999999984
No 455
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.53 E-value=0.013 Score=50.23 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|++|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998643
No 456
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.53 E-value=0.023 Score=45.50 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-+.|+|++|+|||||+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999854
No 457
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.51 E-value=0.022 Score=44.61 Aligned_cols=22 Identities=41% Similarity=0.496 Sum_probs=19.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++|.|+.|+|||+|++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5799999999999999999754
No 458
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.50 E-value=0.056 Score=42.57 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=32.3
Q ss_pred hhccccCCEEEEEEeCCChhh-HHHHHHHHHHHHhhCCCceEEEEEcCCCC
Q psy1417 108 STYYRGTHGVIVVYDVTSGET-FANVKRWLHEIENNCEVVNRILGLRLGLN 157 (188)
Q Consensus 108 ~~~~~~~~~vilv~d~~~~~s-~~~~~~~~~~i~~~~~~~pilvgnK~Dl~ 157 (188)
.....++|.+++|+|+.++.. ...+..++...... ...|++|.||+|+.
T Consensus 81 R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~-~~~~vivlnK~DL~ 130 (307)
T 1t9h_A 81 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN-DIQPIICITKMDLI 130 (307)
T ss_dssp TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT-TCEEEEEEECGGGC
T ss_pred HHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC-CCCEEEEEECCccC
Confidence 346889999999999997654 43445554433322 22445559999993
No 459
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.45 E-value=0.023 Score=44.08 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.+++.|++|+|||++++.+...
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 5799999999999999998753
No 460
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.45 E-value=0.023 Score=48.18 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.+.|+|+.|+|||||++.+.+-
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999864
No 461
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.44 E-value=0.026 Score=42.40 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|++.|..||||||+++.|..
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 462
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.44 E-value=0.025 Score=44.41 Aligned_cols=22 Identities=27% Similarity=0.196 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
-++|.|+.|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 5799999999999999999753
No 463
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.43 E-value=0.015 Score=49.92 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.++++|++|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6789999999999999988643
No 464
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.43 E-value=0.013 Score=40.43 Aligned_cols=20 Identities=10% Similarity=-0.027 Sum_probs=18.4
Q ss_pred eEEEEeCCCCCHHHHHHHHH
Q psy1417 43 KSSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~ 62 (188)
.|++.|++|+|||++++.+.
T Consensus 29 ~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGC
T ss_pred cEEEECCCCccHHHHHHHHH
Confidence 68999999999999999885
No 465
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.35 E-value=0.025 Score=44.76 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.+++.|++|+||||+++.+...
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3799999999999999998754
No 466
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.34 E-value=0.027 Score=41.43 Aligned_cols=19 Identities=37% Similarity=0.354 Sum_probs=17.1
Q ss_pred EEEEeCCCCCHHHHHHHHH
Q psy1417 44 SSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~ 62 (188)
.+|+|+.|+|||||+..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4789999999999999884
No 467
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.33 E-value=0.019 Score=42.65 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=18.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.+++.|++|+|||+++..+..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999888864
No 468
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.31 E-value=0.031 Score=48.16 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.+.++|+.|+|||||++.+.+-
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999999864
No 469
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.31 E-value=0.029 Score=48.34 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.+.++|+.|+|||||++.+.+-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5799999999999999998753
No 470
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.31 E-value=0.022 Score=48.39 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.+.++|+.|+|||||++.+.+-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999998754
No 471
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.30 E-value=0.029 Score=41.73 Aligned_cols=20 Identities=20% Similarity=0.064 Sum_probs=18.4
Q ss_pred eEEEEeCCCCCHHHHHHHHH
Q psy1417 43 KSSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~ 62 (188)
-|++.|.+||||||+++.+.
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 57899999999999999986
No 472
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.30 E-value=0.026 Score=44.53 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.+++.|++|+|||+|++.+...
T Consensus 47 ~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHHH
Confidence 7899999999999999999753
No 473
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.27 E-value=0.028 Score=44.70 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.+++.|++|+|||++++.+..
T Consensus 72 ~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 474
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.24 E-value=0.014 Score=49.99 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.++++|+.|+|||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 578999999999999998764
No 475
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.24 E-value=0.015 Score=44.36 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+|.|..||||||+++.|..
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998863
No 476
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.20 E-value=0.029 Score=44.23 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998743
No 477
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.18 E-value=0.028 Score=47.44 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=17.4
Q ss_pred eEEEEeCCCCCHHHHHHHH
Q psy1417 43 KSSFLQLVGVGKSSLLIRF 61 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l 61 (188)
-++++|++|+|||||++.+
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4689999999999999995
No 478
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.17 E-value=0.024 Score=45.12 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999999974
No 479
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.16 E-value=0.017 Score=49.49 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=18.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.++++|++|+|||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 678999999999999998864
No 480
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.11 E-value=0.043 Score=39.70 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
=+++.|++|+||||++..|+..
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 5799999999999999999864
No 481
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.10 E-value=0.023 Score=42.73 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=16.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|++.|.+||||||+++.+..
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp EEEEECCC---CHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999863
No 482
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.10 E-value=0.033 Score=43.79 Aligned_cols=21 Identities=24% Similarity=0.159 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.+++.|++|+|||+|++.+..
T Consensus 53 ~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 789999999999999999974
No 483
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.03 E-value=0.033 Score=43.86 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.+++.|++|+|||+|++.+...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999999643
No 484
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.03 E-value=0.033 Score=44.41 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.+++.|++|+|||+|++.+..
T Consensus 47 ~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999999974
No 485
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.03 E-value=0.037 Score=41.87 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=18.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|++.|.+|+||||+++.+..
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999863
No 486
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.01 E-value=0.035 Score=44.62 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=18.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
+|+++|.+|+||||+.+.+..
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 799999999999999987753
No 487
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.00 E-value=0.035 Score=42.18 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=20.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.+++.|++|+|||++++.+...
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHT
T ss_pred CEEEECCCCCcHHHHHHHHHHh
Confidence 6799999999999999999754
No 488
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.98 E-value=0.03 Score=48.20 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.5
Q ss_pred EEEEeCCCCCHHHHHHHHHhCC
Q psy1417 44 SSFLQLVGVGKSSLLIRFSDNT 65 (188)
Q Consensus 44 i~vvG~~~~GKssLi~~l~~~~ 65 (188)
+.++|+.|+|||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6899999999999999997543
No 489
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=93.95 E-value=0.031 Score=46.51 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
+++++|++|+|||++++.+..
T Consensus 203 ~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999864
No 490
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.92 E-value=0.015 Score=44.28 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=18.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999974
No 491
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.89 E-value=0.074 Score=49.85 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=18.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
+++++|+.|+|||||++.+.+
T Consensus 446 ~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTT
T ss_pred EEEEEecCCCcHHHHHHHhcc
Confidence 678999999999999998863
No 492
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.87 E-value=0.039 Score=50.01 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=20.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHhCCC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDNTF 66 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~~~ 66 (188)
.+.++|+.|+|||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 468999999999999999987643
No 493
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.86 E-value=0.036 Score=45.25 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=18.2
Q ss_pred eEEEEeCCCCCHHHHHHHHH
Q psy1417 43 KSSFLQLVGVGKSSLLIRFS 62 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~ 62 (188)
-+.|+|++|+|||||+..+.
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 46899999999999999885
No 494
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.85 E-value=0.036 Score=44.47 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.+++.|++|+|||++++.+..
T Consensus 74 ~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 495
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.84 E-value=0.037 Score=45.25 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=18.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-|+|+|++|||||+|...|..
T Consensus 4 ~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHH
Confidence 468999999999999999974
No 496
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.83 E-value=0.043 Score=40.82 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=18.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
=|++-|.+|+||||+++.+..
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999863
No 497
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.82 E-value=0.041 Score=43.21 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.+++.|++|+|||.|+..+..
T Consensus 154 ~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 154 GLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998864
No 498
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.82 E-value=0.037 Score=45.65 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
-+++.|++|+|||+|++.+.+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 499
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.80 E-value=0.039 Score=44.17 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=19.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHhC
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSDN 64 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~~ 64 (188)
.|++.|++|+|||+|++.+...
T Consensus 86 ~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 6899999999999999999743
No 500
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.76 E-value=0.025 Score=48.21 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHh
Q psy1417 43 KSSFLQLVGVGKSSLLIRFSD 63 (188)
Q Consensus 43 ki~vvG~~~~GKssLi~~l~~ 63 (188)
.|+++|.+|||||||++.|.+
T Consensus 371 iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHH
Confidence 689999999999999999874
Done!