RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1417
(188 letters)
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 202 bits (516), Expect = 3e-67
Identities = 87/100 (87%), Positives = 94/100 (94%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKSSLL+RF+DNTFSGSYITTIGVDFKIRT+++NGEKVKLQIWDTAGQERFRTITSTY
Sbjct: 19 GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTY 78
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
YRGTHGVIVVYDVTS E+F NVKRWLHEI NC+ V RIL
Sbjct: 79 YRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRIL 118
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 197 bits (504), Expect = 1e-65
Identities = 41/100 (41%), Positives = 55/100 (55%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGKSS++ R+ F+ Y TIGVDF R I VN E V+L +WDTAGQE F IT Y
Sbjct: 15 AVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAY 74
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
YRG ++V+ T E+F + W ++ + L
Sbjct: 75 YRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTAL 114
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 197 bits (503), Expect = 5e-65
Identities = 65/101 (64%), Positives = 84/101 (83%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RFSD+T++ YI+TIGVDFKI+T++++G+ VKLQIWDTAGQERFRTITS+Y
Sbjct: 18 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YRG+HG+I+VYDVT E+F VK WL EI+ V ++L
Sbjct: 78 YRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL 118
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 195 bits (499), Expect = 1e-64
Identities = 53/101 (52%), Positives = 83/101 (82%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGK+ +L RFS++ F+ ++I+TIG+DFKIRTI+++G+++KLQIWDTAGQERFRTIT+ Y
Sbjct: 18 GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YRG G+++VYD+T+ ++F N++ W+ IE + V +++
Sbjct: 78 YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMI 118
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 195 bits (499), Expect = 2e-64
Identities = 46/101 (45%), Positives = 75/101 (74%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+S L R++D++F+ ++++T+G+DFK++TI N +++KLQIWDTAG ER+RTIT+ Y
Sbjct: 18 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENN-CEVVNRIL 150
YRG G I++YD+T+ E+F V+ W +I+ + +L
Sbjct: 78 YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLL 118
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 195 bits (498), Expect = 2e-64
Identities = 45/101 (44%), Positives = 76/101 (75%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+S L R++D++F+ ++++T+G+DFK++T+ + +++KLQIWDTAGQER+RTIT+ Y
Sbjct: 32 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAY 91
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENN-CEVVNRIL 150
YRG G +++YD+ + E+FA V+ W +I+ + IL
Sbjct: 92 YRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVIL 132
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 195 bits (499), Expect = 2e-64
Identities = 70/101 (69%), Positives = 88/101 (87%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 26 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 85
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YRG HG+IVVYDVT E+F NVK+WL EI+ E VN++L
Sbjct: 86 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 126
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 195 bits (498), Expect = 3e-64
Identities = 70/101 (69%), Positives = 88/101 (87%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF+D+T++ SYI+TIGVDFKIRTI+++G+ +KLQIWDTAGQERFRTITS+Y
Sbjct: 43 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 102
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YRG HG+IVVYDVT E+F NVK+WL EI+ E VN++L
Sbjct: 103 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 143
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 195 bits (497), Expect = 3e-64
Identities = 52/101 (51%), Positives = 76/101 (75%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGK+SL+ RF+D+TF + +T+GVDFKI+T+++ G+K++LQIWDTAGQERF +ITS Y
Sbjct: 36 GVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAY 95
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YR G+I+VYD+T ETF ++ +W+ I+ E +L
Sbjct: 96 YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLL 136
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 194 bits (496), Expect = 4e-64
Identities = 48/101 (47%), Positives = 76/101 (75%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+S L R++D+TF+ ++++T+G+DFK++T+ + ++VKLQIWDTAGQER+RTIT+ Y
Sbjct: 33 SVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAY 92
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENN-CEVVNRIL 150
YRG G I++YD+T+ E+F V+ W +I+ + IL
Sbjct: 93 YRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVIL 133
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 195 bits (498), Expect = 5e-64
Identities = 59/101 (58%), Positives = 79/101 (78%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF ++ F+ S+ITTIG+DFKI+T+D+NG+KVKLQ+WDTAGQERFRTIT+ Y
Sbjct: 30 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY 89
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YRG G+I+VYDVT TF N+K+W + + + +L
Sbjct: 90 YRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLL 130
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 193 bits (494), Expect = 5e-64
Identities = 59/101 (58%), Positives = 79/101 (78%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF ++ F+ S+ITTIG+DFKI+T+D+NG+KVKLQIWDTAGQERFRTIT+ Y
Sbjct: 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAY 72
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YRG G+I+VYD+T TF N+K+W + + + +L
Sbjct: 73 YRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLL 113
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 194 bits (494), Expect = 1e-63
Identities = 47/101 (46%), Positives = 70/101 (69%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGKSS L+R N F + T+GVDF+++T+ V+GE+ LQ+WDTAGQERFR+I +Y
Sbjct: 38 AVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSY 97
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
+R GV+++YDVT ++F N++ W+ IE+ E V +L
Sbjct: 98 FRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIML 138
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 194 bits (494), Expect = 1e-63
Identities = 45/101 (44%), Positives = 68/101 (67%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ ++ RF FS +TIGVDF ++T+++ G++VKLQIWDTAGQERFRTIT +Y
Sbjct: 39 SVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSY 98
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YR +G I+ YD+T +F +V W+ ++ + ++L
Sbjct: 99 YRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLL 139
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 193 bits (492), Expect = 2e-63
Identities = 60/102 (58%), Positives = 75/102 (73%), Gaps = 2/102 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKSSLL+RF+D+TF TIGVDFK++TI V+G K KL IWDTAGQERFRT+T +Y
Sbjct: 25 GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY 84
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC--EVVNRIL 150
YRG GVI+VYDVT +TF + WL+E+E C + +L
Sbjct: 85 YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNML 126
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 193 bits (493), Expect = 2e-63
Identities = 53/101 (52%), Positives = 69/101 (68%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGK+ L+ RF+ F TIGVDF I+T+++NGEKVKLQIWDTAGQERFR+IT +Y
Sbjct: 36 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSY 95
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YR + +I+ YD+T E+F + WL EIE V +L
Sbjct: 96 YRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVL 136
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 191 bits (488), Expect = 6e-63
Identities = 51/102 (50%), Positives = 76/102 (74%), Gaps = 2/102 (1%)
Query: 51 GVGKSSLLIRFSDNTF-SGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITST 109
GVGK+ LL+RF D F +G++I+T+G+DF+ + +DV+G KVKLQ+WDTAGQERFR++T
Sbjct: 20 GVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHA 79
Query: 110 YYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEV-VNRIL 150
YYR H ++++YDVT+ +F N++ WL EI + V +L
Sbjct: 80 YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALML 121
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 191 bits (488), Expect = 7e-63
Identities = 50/101 (49%), Positives = 71/101 (70%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+LL RF+ N F+ +TIGV+F R+I V+G+ +K QIWDTAG ER+R ITS Y
Sbjct: 39 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 98
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEV-VNRIL 150
YRG G ++VYD+ T+ NV+RWL E+ ++ + + +L
Sbjct: 99 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 139
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 191 bits (488), Expect = 8e-63
Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR-TITST 109
VGK+ L RF F TIGVDF+ R +D++GE++K+Q+WDTAGQERFR ++
Sbjct: 30 NVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQH 89
Query: 110 YYRGTHGVIVVYDVTSGETFANVKRWLHEIENNC--EVVNRIL 150
YYR H V+ VYD+T+ +F ++ W+ E + + + RIL
Sbjct: 90 YYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRIL 132
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 192 bits (490), Expect = 1e-62
Identities = 49/101 (48%), Positives = 69/101 (68%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+LL RF+ N F+ +TIGV+F RT+++ G+++K QIWDTAGQER+R ITS Y
Sbjct: 23 GVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAY 82
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEV-VNRIL 150
YRG G ++VYD++ ++ N WL E+ N + V L
Sbjct: 83 YRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGL 123
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 190 bits (485), Expect = 1e-62
Identities = 40/101 (39%), Positives = 65/101 (64%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+SL++R+ +N F+ +ITT+G F + +++ G++V L IWDTAGQERF + Y
Sbjct: 16 CVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIY 75
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YR ++G I+VYD+T ++F VK W+ E+ + +
Sbjct: 76 YRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCI 116
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 190 bits (486), Expect = 1e-62
Identities = 39/97 (40%), Positives = 59/97 (60%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKSSL+ R+ N F TIGV+F + ++V+G V +QIWDTAGQERFR++ + +
Sbjct: 17 GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPF 76
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVN 147
YRG+ ++ + V ++F N+ W E +V
Sbjct: 77 YRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKE 113
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 190 bits (485), Expect = 1e-62
Identities = 49/101 (48%), Positives = 66/101 (65%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL +F++ F TIGV+F R I+V+G+K+KLQIWDTAGQERFR +T +Y
Sbjct: 25 GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSY 84
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEV-VNRIL 150
YRG G ++VYD+T T+ ++ WL + N IL
Sbjct: 85 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIIL 125
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 190 bits (486), Expect = 2e-62
Identities = 51/101 (50%), Positives = 70/101 (69%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGK++LL RF+ N FS TTIGV+F RT+ + VK QIWDTAG ER+R ITS Y
Sbjct: 35 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAY 94
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEV-VNRIL 150
YRG G ++V+D+T +T+A V+RWL E+ ++ E + +L
Sbjct: 95 YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVML 135
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 190 bits (485), Expect = 2e-62
Identities = 48/101 (47%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GKS LL +F + F TIGV+F + I+V G+ VKLQIWDTAGQERFR++T +Y
Sbjct: 20 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSY 79
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEV-VNRIL 150
YRG G ++VYD+TS ET+ + WL + + IL
Sbjct: 80 YRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 120
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 191 bits (487), Expect = 3e-62
Identities = 33/100 (33%), Positives = 51/100 (51%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GK++ + R F Y+ T+GV+ N +K +WDTAGQE+F + Y
Sbjct: 25 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 84
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
Y I+++DVTS T+ NV W ++ CE + +L
Sbjct: 85 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVL 124
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 189 bits (483), Expect = 4e-62
Identities = 47/101 (46%), Positives = 70/101 (69%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL++F+D F + TIGV+F R ++++G+++KLQIWDTAGQE FR+IT +Y
Sbjct: 31 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSY 90
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YRG G ++VYD+T ETF ++ WL + + + +L
Sbjct: 91 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIML 131
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 190 bits (484), Expect = 4e-62
Identities = 49/101 (48%), Positives = 66/101 (65%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GKS LL +F +N F TIGV+F R ++V G+ VKLQIWDTAGQERFR++T +Y
Sbjct: 35 GTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSY 94
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEV-VNRIL 150
YRG G ++VYD+TS ET+ ++ WL + + IL
Sbjct: 95 YRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVIL 135
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 189 bits (483), Expect = 6e-62
Identities = 51/101 (50%), Positives = 72/101 (71%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+LL RF+ N F+ +TIGV+F R+I V+G+ +K QIWDTAGQER+R ITS Y
Sbjct: 15 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAY 74
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEV-VNRIL 150
YRG G ++VYD+ T+ NV+RWL E+ ++ + + +L
Sbjct: 75 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 115
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 189 bits (482), Expect = 1e-61
Identities = 38/97 (39%), Positives = 57/97 (58%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGK+SL+ ++ + FS Y TIG DF + + V+ V +QIWDTAGQERF+++ +
Sbjct: 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAF 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVN 147
YRG ++V+DVT+ TF + W E +
Sbjct: 78 YRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRD 114
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 187 bits (478), Expect = 1e-61
Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKSS++ RF +++F + TIG F +T+ E K IWDTAG ERFR + Y
Sbjct: 16 GVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMY 75
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YRG+ I+VYD+T ETF+ +K W+ E+ + + +
Sbjct: 76 YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAI 116
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 185 bits (472), Expect = 1e-60
Identities = 42/101 (41%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGKSSL++RF F +TIG F +T+ ++ VK +IWDTAGQER+ ++ Y
Sbjct: 16 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 75
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENN-CEVVNRIL 150
YRG IVVYD+T+ E+FA K W+ E++ + L
Sbjct: 76 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIAL 116
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 186 bits (474), Expect = 1e-60
Identities = 39/101 (38%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKSS++ RF + F + TIG F +T+ E K IWDTAGQERF ++ Y
Sbjct: 33 GVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMY 92
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YRG+ ++VYD+T ++F +K+W+ E++ + E + +
Sbjct: 93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAI 133
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 185 bits (473), Expect = 1e-60
Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GKSSL++RF + F +TIG F +T+ VN VK +IWDTAGQER+ ++ Y
Sbjct: 22 GAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMY 81
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YRG I+V+DVT+ +F K+W+ E++ + L
Sbjct: 82 YRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 122
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 184 bits (470), Expect = 3e-60
Identities = 42/106 (39%), Positives = 66/106 (62%), Gaps = 6/106 (5%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEK-VKLQIWDTAGQERFRTITST 109
GVGK+SL+ R+ ++ +S Y TIG DF + + V+G+K +Q+WDTAGQERF+++
Sbjct: 18 GVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVA 77
Query: 110 YYRGTHGVIVVYDVTSGETFANVKRWLHEIE-----NNCEVVNRIL 150
+YRG ++VYDVT+ +F N+K W E N+ E ++
Sbjct: 78 FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVI 123
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 184 bits (470), Expect = 5e-60
Identities = 37/112 (33%), Positives = 74/112 (66%), Gaps = 12/112 (10%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVN----------GEKVKLQIWDTAGQ 100
GVGK+S+L +++D F+ +ITT+G+DF+ + + G+++ LQ+WDTAG
Sbjct: 21 GVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL 80
Query: 101 ERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENN--CEVVNRIL 150
ERFR++T+ ++R G ++++D+T+ ++F NV+ W+ +++ + E + +L
Sbjct: 81 ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVL 132
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 185 bits (471), Expect = 6e-60
Identities = 38/101 (37%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+SL+ RF ++F +Y TIG+DF +T+ + V+LQ+WDTAG ERFR++ +Y
Sbjct: 26 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSY 85
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
R + +VVYD+T+ +F +W+ ++ V +L
Sbjct: 86 IRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 126
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 183 bits (466), Expect = 1e-59
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGE-KVKLQIWDTAGQERFRTITST 109
GK+SL F+ TF Y TIG+DF +R I + G V LQIWD GQ +
Sbjct: 16 ASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDK 75
Query: 110 YYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE 144
Y G GV++VYD+T+ ++F N++ W ++ E
Sbjct: 76 YIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSE 110
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 184 bits (469), Expect = 1e-59
Identities = 44/112 (39%), Positives = 76/112 (67%), Gaps = 12/112 (10%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGE----------KVKLQIWDTAGQ 100
GVGK++ L R++DN F+ +ITT+G+DF+ + + N + KV LQ+WDTAGQ
Sbjct: 35 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ 94
Query: 101 ERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENN--CEVVNRIL 150
ERFR++T+ ++R G ++++D+TS ++F NV+ W+ +++ N CE + +L
Sbjct: 95 ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 146
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 183 bits (466), Expect = 1e-59
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+SL+ RF ++F +Y TIG+DF +T+ + V+LQ+WDTAGQERFR++ +Y
Sbjct: 24 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 83
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
R + +VVYD+T+ +F +W+ ++ V +L
Sbjct: 84 IRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIML 124
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 180 bits (460), Expect = 3e-58
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGV-DFKIRTIDVNGEKVKLQIWDTAGQERFRTITST 109
GVGK++ + R D F +Y T+G + + +D G +K +WDTAGQE+ +
Sbjct: 21 GVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDV 80
Query: 110 YYRGTHGVIVVYDVTSGETFANVKRWLHEIENNC-EVVNRIL 150
YY G G I+ +DVTS T N+ RW+ E + ++
Sbjct: 81 YYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVV 122
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 177 bits (450), Expect = 6e-57
Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 51 GVGKSSLLIRFSD--NTFSGSYITTIGVDFKIRTIDVNGEKVKLQIW--DTAGQERFRTI 106
VGKS+L+ F+ + F Y T GV+ + + + V ++++ DTAG + ++
Sbjct: 30 TVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQ 89
Query: 107 TSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE 144
S Y+ G + I+V+DV+S E+F + K W +++
Sbjct: 90 ISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARP 127
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 165 bits (419), Expect = 1e-52
Identities = 38/94 (40%), Positives = 55/94 (58%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGKSS+++RF N F+ + TIG F + + +N VK +IWDTAGQERF ++ Y
Sbjct: 13 AVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXY 72
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE 144
YR +VVYDVT ++F + W+ E+
Sbjct: 73 YRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS 106
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 160 bits (406), Expect = 2e-50
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 51 GVGKSSLLIRFSDNTFS--GSYITTIGVDFKIRTIDVNGEK---VKLQIWDTAGQERFRT 105
G GK++LL + S G T+G+D K I + ++ + L +WD AG+E F +
Sbjct: 12 GSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS 71
Query: 106 ITSTYYRGTHGVIVVYDVTSGET-FANVKRWLHEIENNCEVVNRIL 150
+ + VYD++ G+ +K WL I+ IL
Sbjct: 72 THPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVIL 117
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 157 bits (400), Expect = 2e-49
Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 3/103 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR-TITST 109
GVGKS+L F ++ D R I V+ E+V L ++D Q +
Sbjct: 33 GVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDH 92
Query: 110 YYRGTHGVIVVYDVTSGETFANVKRWLHEI--ENNCEVVNRIL 150
+ ++V+ VT +F+ V L + + IL
Sbjct: 93 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 135
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 156 bits (396), Expect = 3e-49
Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 3/103 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR-TITST 109
GVGKS+L F ++ D R I V+ E+V L ++D Q +
Sbjct: 12 GVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDH 71
Query: 110 YYRGTHGVIVVYDVTSGETFANVKRWLHEI--ENNCEVVNRIL 150
+ ++V+ VT +F+ V L + + IL
Sbjct: 72 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 114
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 154 bits (392), Expect = 2e-48
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L I+F + F Y TI D + V+G +L I DTAGQE F + Y
Sbjct: 19 GVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQY 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN--NCEVVNRIL 150
R HG ++V+ + ++F V + +I + + +L
Sbjct: 78 MRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVL 119
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 155 bits (394), Expect = 2e-48
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L ++F + F Y T ++ + + ++GE+V++ I DTAGQE + I Y
Sbjct: 24 GVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNY 82
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN--NCEVVNRIL 150
+R G + V+ +T E+FA + +I E V +L
Sbjct: 83 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 124
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 154 bits (391), Expect = 3e-48
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L I+F F Y TI D ++ +++ + L + DTAGQE F + Y
Sbjct: 28 GVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQY 86
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN--NCEVVNRIL 150
R G ++VY VT +F +V R+ I + E IL
Sbjct: 87 MRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMIL 128
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 154 bits (392), Expect = 4e-48
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 37/149 (24%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVK------------------- 91
VGKSS+++R + +TF + TTIG F +++N +K
Sbjct: 17 SVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNN 76
Query: 92 ------------------LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVK 133
IWDTAGQER+ +I YYRG IVV+D+++ T K
Sbjct: 77 VIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK 136
Query: 134 RWLHEIENNCEVVNRILGLRLGLNQRSID 162
W+++++ + + ++ ++ N+ +D
Sbjct: 137 TWVNQLKISSNYIIILVANKIDKNKFQVD 165
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 152 bits (387), Expect = 8e-48
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L ++F + F Y T ++ + + ++GE+V++ I DTAGQE + I Y
Sbjct: 14 GVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNY 72
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN--NCEVVNRIL 150
+R G + V+ +T E+FA + +I E V +L
Sbjct: 73 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 114
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 152 bits (387), Expect = 2e-47
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKSSL++RF TF +YI TI ++ + I + LQI DT G +F +
Sbjct: 18 GVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLS 76
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIE---NNCEVVNRIL 150
H I+V+ VTS ++ + I + E + +L
Sbjct: 77 ISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVML 119
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 151 bits (384), Expect = 2e-47
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L I+ N F TI ++ + + ++GE L I DTAGQE + + Y
Sbjct: 13 GVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN--NCEVVNRIL 150
R G + V+ + + ++F ++ ++ +I+ + + V +L
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL 113
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 151 bits (385), Expect = 2e-47
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L ++F + F Y T ++ + + ++GE+V++ I DTAGQE + I Y
Sbjct: 28 GVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNY 86
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN--NCEVVNRIL 150
+R G + V+ +T E+FA + +I E V +L
Sbjct: 87 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 128
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 150 bits (382), Expect = 5e-47
Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L ++F TF Y TI DF + I+V+ L+I DTAG E+F ++ Y
Sbjct: 13 GVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLY 71
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN--NCEVVNRIL 150
+ G I+VY + + ++F ++K +I E V IL
Sbjct: 72 IKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVIL 113
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 150 bits (381), Expect = 6e-47
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKSSL++RF TF SYI T+ ++ + I + LQI DT G +F +
Sbjct: 13 GVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIE---NNCEVVNRIL 150
H I+VY +TS ++ +K +I + E + +L
Sbjct: 72 ISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIML 114
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 150 bits (381), Expect = 1e-46
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y
Sbjct: 14 GVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQY 72
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN--NCEVVNRIL 150
R G + V+ + + ++F ++ + +I+ + E V +L
Sbjct: 73 MRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVL 114
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 150 bits (381), Expect = 1e-46
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGKSSL I+F + F SY TI F + I VNG++ LQ+ DTAGQ+ + TY
Sbjct: 16 SVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDEYSIFPQTY 74
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN--NCEVVNRIL 150
+G I+VY VTS ++F +K ++ + + +L
Sbjct: 75 SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIML 116
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 150 bits (380), Expect = 2e-46
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L I+ N F Y TI ++ + + ++GE L I DTAGQE + + Y
Sbjct: 31 GVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQY 89
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN--NCEVVNRIL 150
R G + V+ + + ++FA++ + +I+ + + V +L
Sbjct: 90 MRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVL 131
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 144 bits (366), Expect = 1e-44
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L ++F F Y TI ++ + ++V+ ++ L+I DTAG E+F + Y
Sbjct: 13 GVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLY 71
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN--NCEVVNRIL 150
+ G +VY +T+ TF +++ +I + E V IL
Sbjct: 72 MKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMIL 113
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 145 bits (367), Expect = 2e-44
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+SL +F + FS Y T+ + + + + ++ L + DTAGQ+ + + ++
Sbjct: 34 CVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAGQDEYSILPYSF 92
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN--NCEVVNRIL 150
G HG ++VY VTS +F ++ ++ V +L
Sbjct: 93 IIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVL 134
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 140 bits (355), Expect = 5e-43
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 4/102 (3%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L F G G + R+I V+GE+ L ++D Q+ R +
Sbjct: 12 GVGKSALARIFGGV-EDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGRWLPGHC 69
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN--NCEVVNRIL 150
++VY VT +F ++ + V IL
Sbjct: 70 MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIIL 111
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 139 bits (353), Expect = 1e-42
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 5/104 (4%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITS-- 108
GVGK+SL F+ + D RT+ V+GE L + DT E+ S
Sbjct: 14 GVGKTSLASLFAGKQERDLHEQLG-EDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQE 72
Query: 109 TYYRGTHGVIVVYDVTSGETFANVKRWLHEIEN--NCEVVNRIL 150
+ +G ++VY + +F + ++ + V IL
Sbjct: 73 SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIIL 116
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 134 bits (339), Expect = 2e-40
Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GKS+L+ R+ T+ G FK + I V+G+ L I D G + +
Sbjct: 30 SSGKSALVHRYLTGTYVQEESPEGG-RFK-KEIVVDGQSYLLLIRDEGGPPELQ-----F 82
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN--NCEVVNRIL 150
V+ V+ + +F V + + + N V +L
Sbjct: 83 AAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVL 124
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 133 bits (338), Expect = 4e-40
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L++RF F Y T+ ++ ++ E V ++I DTAGQE +
Sbjct: 38 GVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTIQREG-H 95
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN--NCEVVNRIL 150
R G ++VYD+T +F V + ++ + V IL
Sbjct: 96 MRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLIL 137
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 133 bits (336), Expect = 5e-40
Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GKSSL+ RF ++ T +K + + V+G+ + I + AG + +
Sbjct: 17 RSGKSSLIHRFLTGSYQ-VLEKTESEQYK-KEMLVDGQTHLVLIREEAGAPDAK-----F 69
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIEN----NCEVVNRIL 150
VI V+ + +F V R ++ + + L
Sbjct: 70 SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALAL 113
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 128 bits (325), Expect = 3e-38
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GKS+L ++F F Y + + V+ + V L++ DTA + R Y
Sbjct: 31 GAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLDTPRNCER-Y 88
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENN 142
H +VVY V S ++F + +L + +
Sbjct: 89 LNWAHAFLVVYSVDSRQSFDSSSSYLELLALH 120
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 128 bits (324), Expect = 5e-38
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 51 GVGKSSLLIRFSDNTFS-GSYITTIGVDFKIRTIDVNGEK---VKLQIWDTAGQERFRTI 106
GVGKS+L F+ S S +G D RT+ V+GE + L +W+ G+ + +
Sbjct: 16 GVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--L 73
Query: 107 TSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI--ENNCEVVNRIL 150
+ ++VY +T +F ++ E + IL
Sbjct: 74 HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 123 bits (312), Expect = 5e-36
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 51 GVGKSSLLIRFSDNTFS-GSYITTIGVDFKIRTIDVNGEK---VKLQIWDTAGQERFRTI 106
GVGKS+L F+ S S +G D RT+ V+GE + L +W+ G+ + +
Sbjct: 47 GVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--L 104
Query: 107 TSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIEN--NCEVVNRIL 150
+ ++VY +T +F ++ E + IL
Sbjct: 105 HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 118 bits (299), Expect = 3e-34
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LL+ FS +Y+ T+ +F + E+ L +WDTAGQE + +
Sbjct: 33 AVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLS 91
Query: 111 YRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL 150
Y + V++ + V + +F N+ +W EI++ + +L
Sbjct: 92 YADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVL 132
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 120 bits (303), Expect = 1e-32
Identities = 24/135 (17%), Positives = 42/135 (31%), Gaps = 11/135 (8%)
Query: 24 REQIPTGRGKNGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTI 83
+ H+ K + GK+SLL + TF T G++ +
Sbjct: 24 QSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQA 83
Query: 84 --------DVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRW 135
D ++ WD GQE + + +++ D + +N W
Sbjct: 84 PNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRT---DSNKHYW 140
Query: 136 LHEIENNCEVVNRIL 150
L IE I+
Sbjct: 141 LRHIEKYGGKSPVIV 155
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 114 bits (287), Expect = 1e-32
Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 49 LVG---VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT 105
VG VGK+ LLI ++ NTF Y+ T+ +F + VNG V L +WDTAGQE +
Sbjct: 13 TVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNR 71
Query: 106 ITSTYYRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL 150
+ YRG I+ + + S ++ NV +W+ E+++ V +L
Sbjct: 72 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVL 117
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 115 bits (289), Expect = 1e-32
Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 5/106 (4%)
Query: 49 LVG---VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT 105
LVG GK+SLL+ F+D F SY T+ + + + V G+ V L IWDTAGQ+ +
Sbjct: 39 LVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDR 97
Query: 106 ITSTYYRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL 150
+ +Y +++ +DVTS +F N+ RW E+ + C+ V I+
Sbjct: 98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIV 143
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 111 bits (280), Expect = 2e-31
Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 47 LQLVG---VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERF 103
L +VG GK+ LLI FS + F Y+ T+ + I I+V+G++V+L +WDTAGQE +
Sbjct: 28 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 104 RTITSTYYRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL 150
+ Y T +++ + + S ++ N+ +W E+++ C V IL
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 134
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 110 bits (277), Expect = 7e-31
Identities = 35/106 (33%), Positives = 63/106 (59%), Gaps = 5/106 (4%)
Query: 49 LVG---VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT 105
+VG GK+ LLI FS + F Y+ T+ ++ + I+V+G++V+L +WDTAGQE +
Sbjct: 30 VVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDR 88
Query: 106 ITSTYYRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL 150
+ Y T +++ + V S ++ N+ +W+ E+++ C V IL
Sbjct: 89 LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIIL 134
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 109 bits (274), Expect = 1e-30
Identities = 26/106 (24%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 49 LVG---VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT 105
+VG GK++LL F+ + F +Y+ T+ ++ + +++ ++++L +WDT+G +
Sbjct: 12 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPYYDN 70
Query: 106 ITSTYYRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL 150
+ Y + V++ +D++ ET +V +W EI+ C +L
Sbjct: 71 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 116
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 107 bits (270), Expect = 7e-30
Identities = 26/106 (24%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 49 LVG---VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT 105
+VG GK++LL F+ + F +Y+ T+ ++ + +++ ++++L +WDT+G +
Sbjct: 33 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPYYDN 91
Query: 106 ITSTYYRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL 150
+ Y + V++ +D++ ET +V +W EI+ C +L
Sbjct: 92 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 137
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 107 bits (268), Expect = 2e-29
Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 5/124 (4%)
Query: 31 RGKNGPTHIFSQKSSFLQLVG---VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNG 87
RG + F ++ +VG VGK+ LLI ++ N F G YI T+ D + V+G
Sbjct: 17 RGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDG 75
Query: 88 EKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVV 146
+ V L +WDTAGQE + + Y T ++ + + S +F NV+ +W E+ ++C
Sbjct: 76 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT 135
Query: 147 NRIL 150
IL
Sbjct: 136 PIIL 139
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 104 bits (262), Expect = 7e-29
Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 49 LVG---VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT 105
+VG VGK+ LLI ++ N F G YI T+ D + V+G+ V L +WDTAGQE +
Sbjct: 10 VVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQEDYDR 68
Query: 106 ITSTYYRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL 150
+ Y T ++ + + S +F NV+ +W E+ ++C IL
Sbjct: 69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 114
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 104 bits (261), Expect = 2e-28
Identities = 25/106 (23%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 49 LVG---VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT 105
LVG GK+++L + + + +Y+ T+ ++ ++ ++V+L +WDT+G +
Sbjct: 32 LVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDN 90
Query: 106 ITSTYYRGTHGVIVVYDVTSGETFANV-KRWLHEIENNCEVVNRIL 150
+ Y + V++ +D++ ET + K+W EI + C +L
Sbjct: 91 VRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLL 136
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 100 bits (250), Expect = 8e-27
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 49 LVG---VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT 105
VG VGK+ +LI ++ N F YI T+ +F + V+G+ V L +WDTAGQE +
Sbjct: 14 TVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSR 72
Query: 106 ITSTYYRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL 150
+ YRG ++ + + S ++ NV +W+ E+ V +L
Sbjct: 73 LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVL 118
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 99.9 bits (249), Expect = 8e-27
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 6/128 (4%)
Query: 49 LVG---VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT 105
+VG VGK+ LL+ ++++ F Y+ T+ D ++ V G++ L ++DTAGQE +
Sbjct: 23 VVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQEDYDR 81
Query: 106 ITSTYYRGTHGVIVVYDVTSGETFANVK-RWLHEIENNCEVVNRIL-GLRLGLNQRSIDE 163
+ Y T ++ + V + +F NVK W+ E++ V +L G ++ L
Sbjct: 82 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTL 141
Query: 164 VNLCHRGS 171
L
Sbjct: 142 ARLNDMKE 149
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 99.4 bits (248), Expect = 1e-26
Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 28 PTGRGKNGPTHIFSQKSSFLQLVG---VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTID 84
P GRG+ G K LVG VGK+SL++ ++ N + YI T D +
Sbjct: 7 PGGRGRAGGAEGRGVK---CVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVS 62
Query: 85 VNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVK-RWLHEIENNC 143
V+G V+LQ+ DTAGQ+ F + Y T ++ + V S +F NV +W+ EI +C
Sbjct: 63 VDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC 122
Query: 144 EVVNRIL 150
IL
Sbjct: 123 PKAPIIL 129
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 78.2 bits (193), Expect = 2e-18
Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 12/113 (10%)
Query: 49 LVGVGKSSLLIRFSDN----------TFSGSYITTIGVDFKIRTID-VNGEKVKLQIWDT 97
GK++ L + + T+ DF I V G K + ++
Sbjct: 22 PGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTV 81
Query: 98 AGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
GQ + RG G++ V D AN + + N L
Sbjct: 82 PGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESM-RNMRENLAEYGLTL 133
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 76.6 bits (188), Expect = 4e-17
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 21 QGAREQIPTGRGKNGPTHIFSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKI 80
+ I K + VGK+ LLI ++ N F G YI T+ D
Sbjct: 135 REGVMLIKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYS 193
Query: 81 RTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVK-RWLHEI 139
+ V+G+ V L +WDTAG E + + Y T ++ + + S +F +V+ +W E+
Sbjct: 194 ANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV 253
Query: 140 ENNCEVVNRIL 150
++C IL
Sbjct: 254 RHHCPNTPIIL 264
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 71.1 bits (175), Expect = 5e-16
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 40 FSQKSSFLQLVGV---GKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWD 96
S++ L LVG+ GK++ + + F+ I T+G F +R I V +++WD
Sbjct: 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWD 73
Query: 97 TAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
GQ RFR++ Y RG ++ + D E K LH +
Sbjct: 74 IGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNL 116
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 66.1 bits (162), Expect = 4e-14
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 53 GKSSLLIRF-SDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYY 111
GK++++ + N S + + TIG F I + + ++D +GQ R+R + YY
Sbjct: 33 GKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYY 88
Query: 112 RGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNR 148
+ +I V D + K L + N+ ++ +R
Sbjct: 89 KEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHR 125
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 65.4 bits (160), Expect = 8e-14
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 39 IFSQKSSFLQLVGV---GKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIW 95
+F+ + + +VG+ GK+++L +FS N TIG + I +N + +W
Sbjct: 11 LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG--SNVEEIVINN--TRFLMW 65
Query: 96 DTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
D GQE R+ +TYY T VIVV D T E + + L+++
Sbjct: 66 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM 109
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 65.3 bits (160), Expect = 9e-14
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 8/104 (7%)
Query: 39 IFSQKSSFLQLVG---VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIW 95
+ + + + ++G GK+S+L R + + T+G + T+ + ++W
Sbjct: 17 LPADRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVG--VNLETLQYKN--ISFEVW 71
Query: 96 DTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
D GQ R Y+ T VI V D T + K L+ +
Sbjct: 72 DLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYAL 115
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 65.4 bits (160), Expect = 9e-14
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 39 IFSQKSSFLQLVG---VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIW 95
IF +K + +VG GK+++L + + I TIG F + T++ + +W
Sbjct: 24 IFGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--ICFTVW 78
Query: 96 DTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
D GQ++ R + Y++ T G+I V D E L ++
Sbjct: 79 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKM 122
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 64.5 bits (158), Expect = 1e-13
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 8/103 (7%)
Query: 40 FSQKSSFLQLVG---VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWD 96
+ + ++G GK+++L R + I TIG F + T+ +K Q+WD
Sbjct: 3 HMTREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTYKN--LKFQVWD 57
Query: 97 TAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
G R YY T VI V D + K L +
Sbjct: 58 LGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAM 100
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 64.6 bits (158), Expect = 2e-13
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 40 FSQKSSFLQLVG---VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWD 96
++ L ++G GK+++L +F+ + T+G F I+T++ G KL IWD
Sbjct: 14 QKERELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLG--FNIKTLEHRG--FKLNIWD 68
Query: 97 TAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
GQ+ R+ Y+ T G+I V D + + +R L +
Sbjct: 69 VGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 111
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 64.1 bits (157), Expect = 2e-13
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 53 GKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYR 112
GK++LL + + S T G F I+++ G KL +WD GQ + R +Y+
Sbjct: 28 GKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFE 82
Query: 113 GTHGVIVVYDVTSGETFANVKRWLHEI 139
T +I V D + F + L E+
Sbjct: 83 NTDILIYVIDSADRKRFEETGQELTEL 109
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 63.8 bits (156), Expect = 4e-13
Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 8/103 (7%)
Query: 40 FSQKSSFLQLVGV---GKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWD 96
+K+ L +G+ GK++LL D+ ++ T+ + + G + +D
Sbjct: 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLH--PTSEELTIAG--MTFTTFD 75
Query: 97 TAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
G + R + Y +G++ + D E K L +
Sbjct: 76 LGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSL 118
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 63.4 bits (155), Expect = 5e-13
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 53 GKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYR 112
GK+++L R + TIG F + T+ +KL +WD GQ R YY
Sbjct: 30 GKTTILYRLQIGEVV-TTKPTIG--FNVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYA 84
Query: 113 GTHGVIVVYDVTSGETFANVKRWLHEI 139
T VI V D T + + + LH +
Sbjct: 85 DTAAVIFVVDSTDKDRMSTASKELHLM 111
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 62.2 bits (152), Expect = 9e-13
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 53 GKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYR 112
GK+++L + + I TIG F + T++ + +WD GQ++ R + Y++
Sbjct: 12 GKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQ 66
Query: 113 GTHGVIVVYDVTSGETFANVKRWLHEI 139
T G+I V D E + L +
Sbjct: 67 NTQGLIFVVDSNDRERVNEAREELMRM 93
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 62.6 bits (153), Expect = 1e-12
Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 8/103 (7%)
Query: 40 FSQKSSFLQLVGV---GKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWD 96
K L +G+ GK++LL ++ + + T + + +K +D
Sbjct: 19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWH--PTSEELAIGN--IKFTTFD 73
Query: 97 TAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEI 139
G + R + Y+ +G++ + D E F + L +
Sbjct: 74 LGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDAL 116
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 63.5 bits (154), Expect = 1e-12
Identities = 24/162 (14%), Positives = 43/162 (26%), Gaps = 64/162 (39%)
Query: 50 VGVGKSSLLIRF---SDNTFSGSYITTIG-VDFKIRTID--------------VNGEKVK 91
G+GKS L RF S + F + + + DF R ++ + + K
Sbjct: 37 CGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96
Query: 92 LQIW-------DTAGQERFRTITSTYYRG------------------------------- 113
+ I D Q T Y +
Sbjct: 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQM 156
Query: 114 ------THGVIVVYDVTSGE--TFANVKRWLHEIENNCEVVN 147
G ++ DV+ G F + +++ + N
Sbjct: 157 PDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTK 198
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 61.9 bits (151), Expect = 1e-12
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 53 GKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYR 112
GK+++L +FS N TIG + I +N + +WD GQE R+ +TYY
Sbjct: 33 GKTTILYQFSMNEVV-HTSPTIG--SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYT 87
Query: 113 GTHGVIVVYDVTSGETFANVKRWLHEI 139
T VIVV D T E + + L+++
Sbjct: 88 NTEFVIVVVDSTDRERISVTREELYKM 114
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 55.9 bits (135), Expect = 4e-10
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 6/99 (6%)
Query: 53 GKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDV-NGEKVKLQIWDTAGQERFR-TITSTY 110
GK+ L +R + + T+I V N L + D G E R + +
Sbjct: 19 GKTLLFVRLLTGQYRDT-QTSIT--DSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRF 75
Query: 111 YRGTHGVIVVYDVTSGE-TFANVKRWLHEIENNCEVVNR 148
V+ V D + + +V +L+++ + +
Sbjct: 76 KSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKN 114
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 56.8 bits (137), Expect = 5e-10
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Query: 40 FSQKSSFLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAG 99
+ L L GK+++L + + I T+G F + T+ VK +WD G
Sbjct: 321 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTYKN--VKFNVWDVGG 375
Query: 100 QERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
Q++ R + YY GT G+I V D + ++ LH I N+ E+ + I+
Sbjct: 376 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 426
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 56.4 bits (136), Expect = 5e-10
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 46 FLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT 105
+ L GK+++L + + I TIG F + T++ + +WD GQ++ R
Sbjct: 170 MVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRP 224
Query: 106 ITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
+ Y++ T G+I V D E + L + E+ + +L
Sbjct: 225 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 269
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 55.4 bits (133), Expect = 1e-09
Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 9/100 (9%)
Query: 49 LVGVGKSSLLIRFSDNTFSGSYITTIG--VDFKIRTIDVNGEKVKLQIWDTAGQERF--- 103
G GKSS+ + +S +G +D + + G + L +WD GQ+ F
Sbjct: 11 RSGSGKSSMR-SIIFSNYSAFDTRRLGATIDVEHSHLRFLGN-MTLNLWDCGGQDVFMEN 68
Query: 104 --RTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIEN 141
++ +I V+DV S E +++ + ++
Sbjct: 69 YFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQ 108
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 54.2 bits (130), Expect = 1e-09
Identities = 23/99 (23%), Positives = 32/99 (32%), Gaps = 9/99 (9%)
Query: 49 LVGVGKSSLLIRFSDNTFSGSYITTIG--VDFKIRTIDVNGEKVKLQIWDTAGQERFRTI 106
L GKSS+ S + + I + V QIWD GQ F
Sbjct: 28 LRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSF-VNFQIWDFPGQMDFFDP 85
Query: 107 TS---TYYRGTHGVIVVYDVTSG--ETFANVKRWLHEIE 140
T +RGT +I V D E + + +
Sbjct: 86 TFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAY 124
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 50.1 bits (120), Expect = 3e-08
Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 53 GKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYR 112
GK+SLL + ++ + + + + D +G + + D G + R S Y +
Sbjct: 60 GKTSLLTLLTTDSVRPT-VVSQE---PLSAADYDG--SGVTLVDFPGHVKLRYKLSDYLK 113
Query: 113 ----GTHGVIVVYD-VTSGETFANVKRWLHEIENNCEVVNR 148
G+I + D + +L +I + E
Sbjct: 114 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCE 154
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 50.1 bits (120), Expect = 5e-08
Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 11/101 (10%)
Query: 53 GKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYY- 111
GK+SLL + ++ + + + + + + + D G + R S Y
Sbjct: 24 GKTSLLTLLTTDSVRPT-VVSQE-----PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLK 77
Query: 112 ---RGTHGVIVVYD-VTSGETFANVKRWLHEIENNCEVVNR 148
+ G+I + D + +L +I + E
Sbjct: 78 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCE 118
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 44.7 bits (105), Expect = 5e-06
Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 9/103 (8%)
Query: 49 LVGVGKSSLL-IRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFR--- 104
+ GKSS+ + F + + + + L + + GQ +
Sbjct: 7 VRRCGKSSICKVVFHN--MQPLDTLYLESTSNPSLEHFSTL-IDLAVMELPGQLNYFEPS 63
Query: 105 TITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVN 147
+ ++ ++ V D + + N L I VN
Sbjct: 64 YDSERLFKSVGALVYVIDSQ--DEYINAITNLAMIIEYAYKVN 104
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.006
Identities = 38/239 (15%), Positives = 67/239 (28%), Gaps = 109/239 (45%)
Query: 3 ATP-LVIR---VKELYSPIRYVQGAREQIPTGRG-----KNGPTHI-------------- 39
+P L I +++ YV +P G+ NG ++
Sbjct: 335 PSPMLSISNLTQEQV---QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 40 -----------------FSQK-----SSFLQLVGVGK---SSLLIRFSDNTFSGSYITTI 74
FS++ + FL V S LL+ SD I
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLP---VASPFHSHLLVPASD---------LI 439
Query: 75 GVDFKIRTIDVNGEKVKLQIWDTAGQERFRT------------ITS--------TYYRGT 114
D + N + +++ ++DT R I T ++ T
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT 499
Query: 115 HGVIVVYD--VTSGETFANVKRWLHEIENNCEVVNRIL---GLRL---G-LNQRSIDEV 164
H I+ + SG + +R G+R+ G L+ D+
Sbjct: 500 H--ILDFGPGGASGLG---------------VLTHRNKDGTGVRVIVAGTLDINPDDDY 541
Score = 32.3 bits (73), Expect = 0.098
Identities = 21/147 (14%), Positives = 47/147 (31%), Gaps = 48/147 (32%)
Query: 1 MDAT---PLVIRVKELYSPIRYVQGAREQIPTGRGKNGPTHIF---SQ-KSSFLQLV--- 50
MDA PL + + + +V + PT F SQ + F +++
Sbjct: 1 MDAYSTRPLTLS----HGSLEHV------LLV------PTASFFIASQLQEQFNKILPEP 44
Query: 51 --GVGK----SS---LLIRF-------SDNTFSGSY---ITTIGVDFK---IRTIDVNGE 88
G ++ L+ +F + + G + + +F+ + D++
Sbjct: 45 TEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL 104
Query: 89 KVKLQIWDTAGQERFRTITSTYYRGTH 115
KL + + + + Y
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARI 131
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.2 bits (70), Expect = 0.13
Identities = 6/51 (11%), Positives = 15/51 (29%), Gaps = 19/51 (37%)
Query: 113 GTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQRSIDE 163
+ +V + G+ + C +V L+ + +D
Sbjct: 28 KVYPPKIVERFSEGDV----------VCALCGLV---------LSDKLVDT 59
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.33
Identities = 15/115 (13%), Positives = 32/115 (27%), Gaps = 35/115 (30%)
Query: 88 EKVKLQIWDTAGQ-ERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVV 146
+K + + + Y V Y+V+ + + +++ L E+ V+
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQ-VFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 147 ---------------------------NRILGLRLGLNQRSIDEV-----NLCHR 169
+I L L N S + V L ++
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK-NCNSPETVLEMLQKLLYQ 208
Score = 29.1 bits (64), Expect = 1.1
Identities = 31/198 (15%), Positives = 59/198 (29%), Gaps = 82/198 (41%)
Query: 13 LYSPIRYVQGAREQIPT------GRGKNGPTHIFSQ------------KSSFLQL----- 49
L SPI+ Q + R N +F++ + + L+L
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDN-QVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 50 ------VGVGKSSL----------LIRFSDNTFSGSYITTIGVDFKIRT----------- 82
+G GK+ + + F ++ + T
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF---WL-NLKNCNSPETVLEMLQKLLYQ 208
Query: 83 IDVNG-------EKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGET---FANV 132
ID N +KL+I + R R + S Y + ++V+ +V + + F
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELR-RLLKSKPYE--NCLLVLLNVQNAKAWNAF--- 262
Query: 133 KRWLHEIENNCEVVNRIL 150
+C +IL
Sbjct: 263 -------NLSC----KIL 269
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 29.7 bits (66), Expect = 0.59
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 51 GVGKSSLL--IRFSDNTFSGSYITTIGVDFKIRTIDV--NGEKVKLQIWDTAG 99
G+GKS+L+ + + + T GV + T D+ + ++KL I T G
Sbjct: 52 GLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVG 104
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 28.8 bits (64), Expect = 0.94
Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 14/104 (13%)
Query: 51 GVGKSSLL--IRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAG-------QE 101
GVGKSS + I + S S + G + + G L I DT G +
Sbjct: 49 GVGKSSTVNSI-IGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYIND 105
Query: 102 RFRTITSTY--YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC 143
I ++ + ++ V + + K I ++
Sbjct: 106 MALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSF 149
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET:
HGX; 1.75A {Pimelobacter simplex}
Length = 293
Score = 28.2 bits (62), Expect = 1.8
Identities = 11/88 (12%), Positives = 29/88 (32%), Gaps = 1/88 (1%)
Query: 92 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILG 151
L+ +D R + + R H + +T E + +L + + +
Sbjct: 21 LRSFDATADPRLKQVMQALTRHLHAFLREVRLTEAE-WETGIGFLTDAGHVTNERRQEFI 79
Query: 152 LRLGLNQRSIDEVNLCHRGSVDGSVEST 179
L + S+ + + + D + +
Sbjct: 80 LLSDVLGASMQTIAMNNEAHGDATEATV 107
>3isg_A Penicillinase, beta-lactamase OXA-1; hydrolase, lysine
carboxylation, antibiotic resistance; HET: KCX DRW;
1.40A {Escherichia coli} PDB: 1m6k_A*
Length = 251
Score = 28.0 bits (62), Expect = 1.9
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 101 ERFRTITSTYYRGTHGVIVVYDVTSGETFANVKR 134
T+ S + GT G ++YD ++ A +
Sbjct: 2 TDISTVASPLFEGTEGCFLLYDASTNAEIAQFNK 35
>2hra_A Glutamyl-tRNA synthetase, cytoplasmic; GST-fold, ligase; 1.90A
{Saccharomyces cerevisiae} PDB: 2hrk_A 2hsm_A
Length = 209
Score = 27.9 bits (61), Expect = 1.9
Identities = 5/31 (16%), Positives = 10/31 (32%)
Query: 115 HGVIVVYDVTSGETFANVKRWLHEIENNCEV 145
+ + + NV RW +E +
Sbjct: 147 RSNGMCGSIIKNKVDVNVSRWYTLLEMDPIF 177
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 27.1 bits (60), Expect = 3.0
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 13/55 (23%)
Query: 51 GVGKSSLL--I----RFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAG 99
GVGKSS + + + F + + + G + I DT G
Sbjct: 46 GVGKSSTVNSLIGEQVVRVSPFQAE--GL---RPVMVSRTMGG--FTINIIDTPG 93
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 27.5 bits (62), Expect = 3.1
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 30/67 (44%)
Query: 49 LVG---VGKSSLLIRFSDNTFSG------SYI--TTIGVDFKIR-----TIDVNGEKVKL 92
+VG VGKSSLL N +S + + TT R + V G + +
Sbjct: 229 IVGRPNVGKSSLL-----NAWSQSDRAIVTDLPGTT-------RDVVESQLVVGG--IPV 274
Query: 93 QIWDTAG 99
Q+ DTAG
Sbjct: 275 QVLDTAG 281
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 27.1 bits (61), Expect = 3.6
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 30/67 (44%)
Query: 49 LVG---VGKSSLLIRFSDNTFSG------SYI--TTIGVDFKIR-----TIDVNGEKVKL 92
+ G GKS+LL NT G S++ TT R +
Sbjct: 238 IAGKPNAGKSTLL-----NTLLGQERAIVSHMPGTT-------RDYIEECFIHDK--TMF 283
Query: 93 QIWDTAG 99
++ DTAG
Sbjct: 284 RLTDTAG 290
>2wj8_A Nucleoprotein; RNA binding protein RNA complex, nucleocapsid (N),
ribonucleoprotein, respiratory syncytial virus (RSV);
3.29A {Human respiratory syncytial virus astrain long}
PDB: 2yhm_A 2yhp_A 2yhq_A
Length = 391
Score = 27.1 bits (59), Expect = 4.0
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 67 SGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQER 102
+G ++ GVD D+NG+++K ++ A
Sbjct: 86 AGYHVKANGVDVTTHRQDINGKEMKFEVLTLASLTT 121
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 27.3 bits (60), Expect = 4.2
Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 13/119 (10%)
Query: 77 DFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWL 136
D K +G + + D+ G F + + R T G +VV D G
Sbjct: 85 DVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR 144
Query: 137 HEIENNCE---VVNRI--LGLRLGLN--------QRSIDEVNLCHRGSVDGSVESTSVD 182
+ + V+N++ L L ++ R+++ VN+ D + V
Sbjct: 145 QALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVY 203
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 27.1 bits (61), Expect = 4.2
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 30/67 (44%)
Query: 49 LVG---VGKSSLLIRFSDNTFSG------SYI--TTIGVDFKIR-----TIDVNGEKVKL 92
+VG VGKS+LL N + I TT R I + G +
Sbjct: 248 IVGKPNVGKSTLL-----NRLLNEDRAIVTDIPGTT-------RDVISEEIVIRG--ILF 293
Query: 93 QIWDTAG 99
+I DTAG
Sbjct: 294 RIVDTAG 300
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 27.0 bits (59), Expect = 4.3
Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 7/104 (6%)
Query: 50 VGVGKSSLL--IRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTIT 107
G GKSS + +R N G+ T + R + + WD G
Sbjct: 78 TGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPP 137
Query: 108 STYYRGTHG-----VIVVYDVTSGETFANVKRWLHEIENNCEVV 146
TY I++ + ++ + + ++ V
Sbjct: 138 DTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFV 181
>2ool_A Sensor protein; bacteriophytochrome, photoconversion,
photoreceptor, biliver signaling protein; HET: LBV;
2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1
d.110.3.9
Length = 337
Score = 26.5 bits (58), Expect = 6.3
Identities = 6/44 (13%), Positives = 12/44 (27%), Gaps = 1/44 (2%)
Query: 79 KIRTI-DVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 121
+R I D+ L ++ + R + Y
Sbjct: 229 PVRIIPDIGYRPSPLVPDINPRLGGPIDLSFSVLRSVSPTHLEY 272
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 26.3 bits (57), Expect = 6.4
Identities = 8/84 (9%), Positives = 23/84 (27%), Gaps = 7/84 (8%)
Query: 61 FSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY------YRGT 114
+ N + Y I + + + + +
Sbjct: 132 YGHNEVNTEYFIWADNRGTIGFQSYEDDSQYI-VHSAKSDVEYSSGVLHKDSLLLALYSP 190
Query: 115 HGVIVVYDVTSGETFANVKRWLHE 138
G++ VY+++S + ++ E
Sbjct: 191 DGILDVYNLSSPDQASSRFPVDEE 214
>3c8e_A YGHU, glutathione S-transferase homologue; glutathione transferase
homologue, E. coli; HET: GSH; 1.50A {Escherichia coli}
Length = 288
Score = 26.2 bits (58), Expect = 7.0
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 115 HGVIVVYDVTSGETFANVKRWLHEIEN 141
GV + ++ +V+RW E+
Sbjct: 222 GGVYDAAEFLDAGSYKHVQRWAKEVGE 248
>3o5u_A Chlorocatechol 1,2-dioxygenase; beta barrel,oxidoreductase,
oxidoreductase; HET: MYY DHB; 2.35A {Rhodococcus opacus}
PDB: 3o32_A* 1s9a_A* 3o6j_A* 3o6r_A*
Length = 257
Score = 26.0 bits (57), Expect = 7.3
Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 99 GQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQ 158
R + + IV +++T+ E + + +++ + E L L
Sbjct: 2 ANTRVIELFDEFTDLIRDFIVRHEITTPE-YETIMQYMISVGEAGEW---PLWLDAFFET 57
Query: 159 RSIDEVNLCHRGSVDGSVE 177
+D V+ +++
Sbjct: 58 T-VDSVSYGKGNWTSSAIQ 75
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 26.2 bits (57), Expect = 7.5
Identities = 3/33 (9%), Positives = 7/33 (21%)
Query: 95 WDTAGQERFRTITSTYYRGTHGVIVVYDVTSGE 127
+ G I V + + +
Sbjct: 107 DQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHK 139
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A
{Clostridium thermocellum}
Length = 156
Score = 25.3 bits (55), Expect = 9.2
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 8/98 (8%)
Query: 37 THIFSQKSSFLQLVGV-----GKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVK 91
I + +++LQ V G ++++F++ G + V + +I VNG K
Sbjct: 39 GWIGNGSNNYLQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPEK 98
Query: 92 -LQIWDTAGQERFRTITSTYY--RGTHGVIVVYDVTSG 126
++T G +RT Y G + + +
Sbjct: 99 GHYFFNTRGWNTYRTDIIDVYLNAGNNTIRFYNGTSGS 136
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 25.6 bits (57), Expect = 9.6
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 22/63 (34%)
Query: 49 LVG---VGKSSLLIRFSDNTFSG------SYI--TTIGVDFKIR-TIDVNGEKVKLQIWD 96
+ G GKSSLL N +G + I TT V +R I ++G + L I D
Sbjct: 9 IAGRPNAGKSSLL-----NALAGREAAIVTDIAGTTRDV---LREHIHIDG--MPLHIID 58
Query: 97 TAG 99
TAG
Sbjct: 59 TAG 61
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.405
Gapped
Lambda K H
0.267 0.0490 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,916,169
Number of extensions: 167843
Number of successful extensions: 685
Number of sequences better than 10.0: 1
Number of HSP's gapped: 607
Number of HSP's successfully gapped: 151
Length of query: 188
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 100
Effective length of database: 4,244,745
Effective search space: 424474500
Effective search space used: 424474500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.2 bits)