RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1417
(188 letters)
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 112 bits (281), Expect = 2e-32
Identities = 52/100 (52%), Positives = 80/100 (80%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGK+ +L RFS++ F+ ++I+TIG+DFKIRTI+++G+++KLQIWDTAGQERFRTIT+ Y
Sbjct: 16 GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 75
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
YRG G+++VYD+T+ ++F N++ W+ IE + +
Sbjct: 76 YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKM 115
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 112 bits (280), Expect = 2e-32
Identities = 58/93 (62%), Positives = 76/93 (81%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RF ++ F+ S+ITTIG+DFKI+T+D+NG+KVKLQIWDTAGQERFRTIT+ Y
Sbjct: 12 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAY 71
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC 143
YRG G+I+VYD+T TF N+K+W + +
Sbjct: 72 YRGAMGIILVYDITDERTFTNIKQWFKTVNEHA 104
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 109 bits (272), Expect = 8e-31
Identities = 63/93 (67%), Positives = 80/93 (86%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL+RFSD+T++ YI+TIGVDFKI+T++++G+ VKLQIWDTAGQERFRTITS+Y
Sbjct: 16 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSY 75
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC 143
YRG+HG+I+VYDVT E+F VK WL EI+
Sbjct: 76 YRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA 108
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 102 bits (254), Expect = 2e-28
Identities = 51/93 (54%), Positives = 66/93 (70%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGK+ L+ RF+ F TIGVDF I+T+++NGEKVKLQIWDTAGQERFR+IT +Y
Sbjct: 15 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSY 74
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC 143
YR + +I+ YD+T E+F + WL EIE
Sbjct: 75 YRSANALILTYDITCEESFRCLPEWLREIEQYA 107
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 96.9 bits (240), Expect = 2e-26
Identities = 46/99 (46%), Positives = 75/99 (75%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+S L R++D++F+ ++++T+G+DFK++TI N +++KLQIWDTAGQER+RTIT+ Y
Sbjct: 15 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAY 74
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRI 149
YRG G I++YD+T+ E+F V+ W +I+ ++
Sbjct: 75 YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQV 113
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 95.7 bits (237), Expect = 8e-26
Identities = 62/118 (52%), Positives = 79/118 (66%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKSSLL+RF+D+TF TIGVDFK++TI V+G K KL IWDTAGQERFRT+T +Y
Sbjct: 17 GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY 76
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQRSIDEVNLCH 168
YRG GVI+VYDVT +TF + WL+E+E C + + L + EV+
Sbjct: 77 YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNE 134
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 94.9 bits (235), Expect = 1e-25
Identities = 49/100 (49%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 51 GVGKSSLLIRFSDNTF-SGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITST 109
GVGK+ LL+RF D F +G++I+T+G+DF+ + +DV+G KVKLQ+WDTAGQERFR++T
Sbjct: 16 GVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHA 75
Query: 110 YYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRI 149
YYR H ++++YDVT+ +F N++ WL EI + +
Sbjct: 76 YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVAL 115
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 89.2 bits (220), Expect = 2e-23
Identities = 48/100 (48%), Positives = 66/100 (66%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL +F++ F TIGV+F R I+V+G+K+KLQIWDTAGQERFR +T +Y
Sbjct: 14 GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSY 73
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
YRG G ++VYD+T T+ ++ WL + N I+
Sbjct: 74 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVII 113
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 88.4 bits (218), Expect = 5e-23
Identities = 50/94 (53%), Positives = 69/94 (73%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+LL RF+ N F+ +TIGV+F R+I V+G+ +K QIWDTAGQER+R ITS Y
Sbjct: 14 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAY 73
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE 144
YRG G ++VYD+ T+ NV+RWL E+ ++ +
Sbjct: 74 YRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 107
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 86.5 bits (213), Expect = 2e-22
Identities = 47/100 (47%), Positives = 63/100 (63%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GKS LL +F + F TIGV+F + I+V G+ VKLQIWDTAGQERFR++T +Y
Sbjct: 15 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSY 74
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
YRG G ++VYD+TS ET+ + WL + I+
Sbjct: 75 YRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVII 114
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 85.3 bits (210), Expect = 8e-22
Identities = 43/112 (38%), Positives = 74/112 (66%), Gaps = 10/112 (8%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGE----------KVKLQIWDTAGQ 100
GVGK++ L R++DN F+ +ITT+G+DF+ + + N + KV LQ+WDTAGQ
Sbjct: 15 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ 74
Query: 101 ERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGL 152
ERFR++T+ ++R G ++++D+TS ++F NV+ W+ +++ N N + L
Sbjct: 75 ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 126
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 79.6 bits (195), Expect = 8e-20
Identities = 40/93 (43%), Positives = 63/93 (67%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+SL++R+ +N F+ +ITT+G F + +++ G++V L IWDTAGQERF + Y
Sbjct: 13 CVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIY 72
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC 143
YR ++G I+VYD+T ++F VK W+ E+
Sbjct: 73 YRDSNGAILVYDITDEDSFQKVKNWVKELRKML 105
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 77.3 bits (189), Expect = 8e-19
Identities = 36/93 (38%), Positives = 60/93 (64%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+SL+ RF ++F +Y TIG+DF +T+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 10 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSY 69
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC 143
R + +VVYD+T+ +F +W+ ++
Sbjct: 70 IRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER 102
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 77.0 bits (188), Expect = 1e-18
Identities = 41/93 (44%), Positives = 58/93 (62%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGKSSL++RF F +TIG F +T+ ++ VK +IWDTAGQER+ ++ Y
Sbjct: 16 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 75
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC 143
YRG IVVYD+T+ E+FA K W+ E++
Sbjct: 76 YRGAQAAIVVYDITNEESFARAKNWVKELQRQA 108
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 76.5 bits (187), Expect = 2e-18
Identities = 42/110 (38%), Positives = 66/110 (60%), Gaps = 5/110 (4%)
Query: 41 SQKSSFLQLV-----GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIW 95
+ KSS +++ GVGKSSL+ R+ N F TIGV+F + ++V+G V +QIW
Sbjct: 1 AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 60
Query: 96 DTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEV 145
DTAGQERFR++ + +YRG+ ++ + V ++F N+ W E +V
Sbjct: 61 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADV 110
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 74.5 bits (182), Expect = 9e-18
Identities = 46/93 (49%), Positives = 67/93 (72%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS LL++F+D F + TIGV+F R ++++G+++KLQIWDTAGQE FR+IT +Y
Sbjct: 13 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSY 72
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC 143
YRG G ++VYD+T ETF ++ WL + +
Sbjct: 73 YRGAAGALLVYDITRRETFNHLTSWLEDARQHS 105
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 71.6 bits (174), Expect = 2e-16
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 3/121 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F Y+ T+ D T+ + GE L ++DTAGQE + +
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLS 71
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC--EVVNRILGLRLGLNQRSIDEVNLCH 168
Y T +V + V S +F NVK + + ++G ++ L L
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAK 131
Query: 169 R 169
Sbjct: 132 N 132
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 69.7 bits (169), Expect = 7e-16
Identities = 38/93 (40%), Positives = 55/93 (59%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGKSS+++RF N F+ + TIG F + + +N VK +IWDTAGQERF ++ Y
Sbjct: 13 AVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMY 72
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC 143
YR +VVYDVT ++F + W+ E+
Sbjct: 73 YRNAQAALVVYDVTKPQSFIKARHWVKELHEQA 105
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 67.3 bits (163), Expect = 4e-15
Identities = 41/99 (41%), Positives = 59/99 (59%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKSS++ RF +++F + TIG F +T+ E K IWDTAG ERFR + Y
Sbjct: 14 GVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMY 73
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRI 149
YRG+ I+VYD+T ETF+ +K W+ E+ + +
Sbjct: 74 YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVV 112
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 65.1 bits (157), Expect = 3e-14
Identities = 40/95 (42%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERF-RTITST 109
VGK+ L RF F TIGVDF+ R +D++GE++K+Q+WDTAGQERF +++
Sbjct: 12 NVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQH 71
Query: 110 YYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE 144
YYR H V+ VYD+T+ +F ++ W+ E + +
Sbjct: 72 YYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL 106
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 64.7 bits (156), Expect = 5e-14
Identities = 38/97 (39%), Positives = 57/97 (58%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGK+SL+ ++ + FS Y TIG DF + + V+ V +QIWDTAGQERF+++ +
Sbjct: 12 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAF 71
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVN 147
YRG ++V+DVT+ TF + W E +
Sbjct: 72 YRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRD 108
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 64.2 bits (155), Expect = 7e-14
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L ++F TF Y TI DF + I+V+ L+I DTAG E+F ++ Y
Sbjct: 13 GVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLY 71
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE 144
+ G I+VY + + ++F ++K +I
Sbjct: 72 IKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR 105
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 63.9 bits (154), Expect = 8e-14
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L ++F F Y TI D + ++V+ ++ L+I DTAG E+F + Y
Sbjct: 13 GVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLY 71
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE 144
+ G +VY +T+ TF +++ +I +
Sbjct: 72 MKNGQGFALVYSITAQSTFNDLQDLREQILRVKD 105
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 62.7 bits (151), Expect = 2e-13
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GK+++L + T V + + +WD GQ++ R + Y
Sbjct: 10 AAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY 64
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLR 153
++ T G+I V D E + L + E+ + +L +
Sbjct: 65 FQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVF 107
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 63.1 bits (152), Expect = 2e-13
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LLI ++ N F G YI T+ D + V+G+ V L +WDTAGQE + +
Sbjct: 15 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLS 73
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC--EVVNRILGLRLGL-NQRSIDEVNLC 167
Y T ++ + + S +F NV+ + + ++G +L L + + E
Sbjct: 74 YPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKE 133
Query: 168 HR 169
+
Sbjct: 134 KK 135
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 62.4 bits (150), Expect = 3e-13
Identities = 41/94 (43%), Positives = 63/94 (67%), Gaps = 1/94 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKV-KLQIWDTAGQERFRTITST 109
GVGK+SL+ R+ ++ +S Y TIG DF + + V+G+KV +Q+WDTAGQERF+++
Sbjct: 12 GVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVA 71
Query: 110 YYRGTHGVIVVYDVTSGETFANVKRWLHEIENNC 143
+YRG ++VYDVT+ +F N+K W E +
Sbjct: 72 FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHA 105
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 62.4 bits (150), Expect = 3e-13
Identities = 40/94 (42%), Positives = 53/94 (56%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGKSS++ R+ F+ Y TIGVDF R I VN E V+L +WDTAGQE F IT Y
Sbjct: 12 AVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAY 71
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE 144
YRG ++V+ T E+F + W ++
Sbjct: 72 YRGAQACVLVFSTTDRESFEAISSWREKVVAEVG 105
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 62.3 bits (150), Expect = 4e-13
Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GK+ LLI S + F Y+ T+ + + I+V+G++V+L +WDTAG E + +
Sbjct: 12 ACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLS 70
Query: 111 YRGTHGVIVVYDVTSGETFANVKRW-LHEIENNCEVVNRI 149
Y T +++ + + S ++ N+ E+++ C V I
Sbjct: 71 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII 110
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 61.9 bits (149), Expect = 5e-13
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 39 IFSQKSSFLQLVG---VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIW 95
IF K + ++G GK+++L + + I T+G + + T VK +W
Sbjct: 7 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYK----NVKFNVW 61
Query: 96 DTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
D GQ++ R + YY GT G+I V D + ++ LH I N+ E+ + I+
Sbjct: 62 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 116
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 61.9 bits (149), Expect = 6e-13
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 3/129 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGK+ LL+ ++++ F Y+ T+ D ++ V G++ L ++DTAGQE + +
Sbjct: 19 AVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLS 77
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC--EVVNRILGLRLGLNQRSIDEVNLCH 168
Y T ++ + V + +F NVK V ++G ++ L L
Sbjct: 78 YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLND 137
Query: 169 RGSVDGSVE 177
VE
Sbjct: 138 MKEKPICVE 146
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 62.5 bits (151), Expect = 6e-13
Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 8/105 (7%)
Query: 46 FLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT 105
L GKS+++ + + T G+ +KV ++D GQ R
Sbjct: 11 LLGAGESGKSTIVKQMRILHV----VLTSGIFET----KFQVDKVNFHMFDVGGQRDERR 62
Query: 106 ITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
+ +I V +S + ++ + I
Sbjct: 63 KWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIW 107
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 60.4 bits (145), Expect = 2e-12
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L I+ N F Y TI ++ + + E L I DTAGQE + + Y
Sbjct: 13 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG-ETCLLDILDTAGQEEYSAMRDQY 71
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGL 152
R G + V+ + + ++F ++ ++ +I+ + + + L
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL 113
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 60.3 bits (145), Expect = 2e-12
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L ++F + F Y T D + + ++GE+V++ I DTAGQE + I Y
Sbjct: 14 GVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNY 72
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE 144
+R G + V+ +T E+FA + +I E
Sbjct: 73 FRSGEGFLCVFSITEMESFAATADFREQILRVKE 106
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 60.4 bits (145), Expect = 2e-12
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 46 FLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT 105
L L G GK+++L R + TIG + + ++ + +KL +WD GQ R
Sbjct: 22 ILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVET----LSYKNLKLNVWDLGGQTSIRP 76
Query: 106 ITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE 144
YY T VI V D T + + + LH + E
Sbjct: 77 YWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE 115
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 60.1 bits (144), Expect = 2e-12
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L I+F + F Y TI D + ++ +L I DTAGQE F + Y
Sbjct: 15 GVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQY 73
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC 143
R G ++V+ VT +F + ++ +I
Sbjct: 74 MRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVK 106
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 60.1 bits (144), Expect = 3e-12
Identities = 19/99 (19%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GK++LL F+ + F +Y+ T+ + + +++ ++++L +WDT+G + +
Sbjct: 12 QCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLS 70
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRI 149
Y + V++ +D++ ET +V + ++
Sbjct: 71 YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKM 109
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 60.3 bits (145), Expect = 3e-12
Identities = 17/123 (13%), Positives = 39/123 (31%), Gaps = 6/123 (4%)
Query: 46 FLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT 105
L GKS+ + + S + T G+ + + V ++ D GQ R
Sbjct: 7 LLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYP----FDLQSVIFRMVDVGGQRSERR 60
Query: 106 ITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQRSIDEVN 165
+ ++ + ++ + + +E + + I+ N I +N
Sbjct: 61 KWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLN 120
Query: 166 LCH 168
Sbjct: 121 KKD 123
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 59.9 bits (144), Expect = 4e-12
Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 7/105 (6%)
Query: 46 FLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT 105
L GKS+ L + T G+ D + V ++ D GQ R
Sbjct: 7 LLGAGESGKSTFLKQMRIIH---GQDPTKGIHEY----DFEIKNVPFKMVDVGGQRSERK 59
Query: 106 ITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
+ ++ + + + R + + + + I+
Sbjct: 60 RWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIV 104
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 58.1 bits (139), Expect = 1e-11
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L I+F + F Y D + V+G +L I DTAGQE F + Y
Sbjct: 16 GVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQY 74
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE 144
R HG ++V+ + ++F V + +I +
Sbjct: 75 MRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD 108
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 57.3 bits (137), Expect = 4e-11
Identities = 18/118 (15%), Positives = 39/118 (33%), Gaps = 4/118 (3%)
Query: 49 LVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITS 108
L GK+ L +R + + T+I I ++ N I + +
Sbjct: 8 LCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLD 66
Query: 109 TYYRGTHGVIVVYDVTSGETFAN-VKRWLHEIENNCEVVNRILGLRLGLNQRSIDEVN 165
+ V+ V D + + V +L+++ + + L + N+ D
Sbjct: 67 RFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK--QDIAM 122
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 55.0 bits (131), Expect = 2e-10
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L I+F F Y TI D ++ +++ + L + DTAGQE F + Y
Sbjct: 14 GVGKSALTIQFFQKIFVPDYDPTI-EDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQY 72
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
R G ++VY VT +F +V R+ I + + +
Sbjct: 73 MRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM 112
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 55.0 bits (131), Expect = 3e-10
Identities = 17/124 (13%), Positives = 41/124 (33%), Gaps = 9/124 (7%)
Query: 46 FLQLVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRT 105
L GKS+++ + +G+ I FK +++D GQ R
Sbjct: 7 LLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHF---------KMFDVGGQRSERK 57
Query: 106 ITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQRSIDEVN 165
+ G +I ++ + ++ + + ++ + I + + I +N
Sbjct: 58 KWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLN 117
Query: 166 LCHR 169
Sbjct: 118 KKDL 121
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 54.3 bits (129), Expect = 3e-10
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 5/99 (5%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GK+++L +F+ TI + KL IWD GQ+ R+ Y
Sbjct: 12 NAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNY 66
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRI 149
+ T G+I V D + + +R L + +
Sbjct: 67 FESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 105
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 53.9 bits (128), Expect = 4e-10
Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GK++LL ++ + T+ + + ++ +K +D G + R + Y
Sbjct: 10 NAGKTTLLHMLKNDRLA-----TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDY 64
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGL 152
+ +G++ + D E F + L + N E+ + +
Sbjct: 65 FPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVI 106
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 51.2 bits (121), Expect = 4e-09
Identities = 31/93 (33%), Positives = 47/93 (50%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GK++ + R F Y+ T+GV+ N +K +WDTAGQE+F + Y
Sbjct: 13 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 72
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC 143
Y I+++DVTS T+ NV W ++ C
Sbjct: 73 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC 105
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 51.2 bits (121), Expect = 4e-09
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L++RF F Y T+ ++ E V ++I DTAGQE +
Sbjct: 12 GVGKSALVVRFLTKRFIWEYDPTL-ESTYRHQATIDDEVVSMEILDTAGQEDTIQREG-H 69
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVN 147
R G ++VYD+T +F V + ++ + N
Sbjct: 70 MRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN 106
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 49.2 bits (116), Expect = 3e-08
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 39 IFSQKSSFLQLVG---VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIW 95
+F+ + + +VG GK+++L +FS N + T +I + + +W
Sbjct: 10 LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN-----TRFLMW 64
Query: 96 DTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE 144
D GQE R+ +TYY T VIVV D T E + + L+++ + +
Sbjct: 65 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED 113
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 49.0 bits (115), Expect = 3e-08
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
VGKSSL I+F + F SY TI + + I VNG++ LQ+ DTAGQ+ + TY
Sbjct: 14 SVGKSSLTIQFVEGQFVDSYDPTI-ENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTY 72
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNR 148
+G I+VY VTS ++F +K ++ + V
Sbjct: 73 SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQI 110
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 45.0 bits (105), Expect = 8e-07
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKSSL++RF TF SYI T+ ++ LQI DT G +F +
Sbjct: 12 GVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDK-SICTLQITDTTGSHQFPAMQRLS 70
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC 143
H I+VY +TS ++ +K +I
Sbjct: 71 ISKGHAFILVYSITSRQSLEELKPIYEQICEIK 103
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 43.4 bits (101), Expect = 2e-06
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GK++LL + + S T G + K KL +WD GQ + R +Y
Sbjct: 26 NAGKTTLLKQLASEDISHITP-TQGFNIKSVQSQ----GFKLNVWDIGGQRKIRPYWRSY 80
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
+ T +I V D + F + L E+ ++ +
Sbjct: 81 FENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPV 120
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 43.1 bits (100), Expect = 3e-06
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 4/102 (3%)
Query: 49 LVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITS 108
L GK++ + + F+ I T + V +++WD GQ RFR++
Sbjct: 10 LQYSGKTTFVNVIASGQFNEDMIPT----VGFNMRKITKGNVTIKLWDIGGQPRFRSMWE 65
Query: 109 TYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRIL 150
Y RG ++ + D E K LH + + ++ +
Sbjct: 66 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPV 107
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 43.4 bits (101), Expect = 3e-06
Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 7/118 (5%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GKSSL+ RF ++ T K +D + + I + AG + +
Sbjct: 15 RSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDG--QTHLVLIREEAGAPDAK-----F 67
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQRSIDEVNLCH 168
VI V+ + +F V R ++ + L L L Q I +
Sbjct: 68 SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRV 125
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 43.1 bits (100), Expect = 3e-06
Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 8/113 (7%)
Query: 40 FSQKSSFLQLVG---VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWD 96
+K+ L +G GK++LL D+ T ++ + +D
Sbjct: 9 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF-----TTFD 63
Query: 97 TAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRI 149
G + R + Y +G++ + D E K L + + + N
Sbjct: 64 LGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVP 116
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 43.1 bits (100), Expect = 4e-06
Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 11/101 (10%)
Query: 49 LVGVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITS 108
GK+SLL + ++ T+ + D +G + + D G + R S
Sbjct: 11 PQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAADYDG--SGVTLVDFPGHVKLRYKLS 64
Query: 109 TYY-----RGTHGVIVVYDVTSGETFANVKRWLHEIENNCE 144
Y + +V + +L +I + E
Sbjct: 65 DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITE 105
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 41.6 bits (96), Expect = 1e-05
Identities = 23/94 (24%), Positives = 31/94 (32%), Gaps = 5/94 (5%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GK+++L R T V + +K Q+WD G R Y
Sbjct: 15 GAGKTTILYRLQVGEVV-----TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCY 69
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCE 144
Y T VI V D + K L + E
Sbjct: 70 YSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE 103
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 38.2 bits (87), Expect = 2e-04
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
GVGKS+L F R+I V+GE+ L ++D Q+ R +
Sbjct: 11 GVGKSALARIFGGVED--GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHC 68
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNC 143
++VY VT +F ++
Sbjct: 69 MAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR 101
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 38.2 bits (87), Expect = 2e-04
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
Query: 51 GVGKSSLLIRFSDNTFS-GSYITTIGVDFKIRTIDVNGEKVKLQIWDTA-GQERFRTITS 108
GVGKS+L F+ S S +G D RT+ V+GE + + D + +
Sbjct: 13 GVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHD 72
Query: 109 TYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVN 147
+ ++VY +T +F ++ + +
Sbjct: 73 HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED 111
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 30.9 bits (69), Expect = 0.088
Identities = 17/96 (17%), Positives = 26/96 (27%), Gaps = 4/96 (4%)
Query: 51 GVGKSSLL--IRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITS 108
G GKSS + +R N G+ T + R + + WD G
Sbjct: 66 GSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPD 125
Query: 109 TYYRGTH--GVIVVYDVTSGETFANVKRWLHEIENN 142
TY +++ N I
Sbjct: 126 TYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMM 161
>d2cz4a1 d.58.5.1 (A:1-100) Hypothetical protein TTHA0516 {Thermus
thermophilus [TaxId: 274]}
Length = 100
Score = 29.0 bits (65), Expect = 0.13
Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 79 KIRTIDVNGEKVKLQIW--DTAGQERFRTITSTYYRGTHGVIVVYDV 123
IR++D G+ ++L+ + + + Y+ + V +V
Sbjct: 45 GIRSVDWEGQNIRLETIVSEEVALRILQRLQEEYFPHYAVIAYVENV 91
>d1m6ka_ e.3.1.1 (A:) Class D beta-lactamase {Escherichia coli,
OXA-1 [TaxId: 562]}
Length = 251
Score = 28.7 bits (63), Expect = 0.35
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 105 TITSTYYRGTHGVIVVYDVTSGETFANVKR 134
T+ S + GT G ++YD ++ A +
Sbjct: 6 TVASPLFEGTEGCFLLYDASTNAEIAQFNK 35
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 28.4 bits (63), Expect = 0.44
Identities = 10/72 (13%), Positives = 18/72 (25%)
Query: 75 GVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKR 134
G+ ++ K D G + T G I+V G +
Sbjct: 52 GITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREH 111
Query: 135 WLHEIENNCEVV 146
L + +
Sbjct: 112 ILLARQVGVPYI 123
>d1xa1a_ e.3.1.1 (A:) Regulatory protein BlaR1 {Staphylococcus
aureus [TaxId: 1280]}
Length = 246
Score = 27.4 bits (60), Expect = 0.98
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 108 STYYRGTHGVIVVYDVTSGETFA 130
S + G V+Y + + +
Sbjct: 16 SKIFGSNSGSFVMYSMKKDKYYI 38
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 27.3 bits (59), Expect = 1.2
Identities = 12/99 (12%), Positives = 29/99 (29%), Gaps = 1/99 (1%)
Query: 51 GVGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTY 110
G GKS L ++ + G + +G I + E I +++
Sbjct: 39 GAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAH-LSAEE 97
Query: 111 YRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRI 149
+ +++ + W ++ E +
Sbjct: 98 RQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLM 136
>d2o8ia1 a.288.1.1 (A:1-165) Hypothetical protein Atu2327
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 165
Score = 26.8 bits (59), Expect = 1.4
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 88 EKVKLQIWDTAGQERFR-TITSTYYRGTHG---VIVVYDVTSGETFANVKRWLH-----E 138
E+ + + QE R T ++ Y G +I V + + + + E
Sbjct: 83 EQAGAGLDRLSPQEHARFTQLNSAYTEKFGFPFIIAVKGLNRHDILSAFDTRIDNNAAQE 142
Query: 139 IENNCEVVNRILGLRL 154
V +I LRL
Sbjct: 143 FATATGQVEKIAWLRL 158
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 26.2 bits (56), Expect = 2.2
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 49 LVG---VGKSSLLIRFSDNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAG 99
LVG GKSSLL + + + + ++V+ E+ + + D G
Sbjct: 6 LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEE-RFTLADIPG 58
>d1k55a_ e.3.1.1 (A:) Class D beta-lactamase {Pseudomonas
aeruginosa, OXA-10 [TaxId: 287]}
Length = 245
Score = 26.3 bits (57), Expect = 2.4
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 113 GTHGVIVVYDVTSGETFAN 131
+GV V+ +S N
Sbjct: 16 AVNGVFVLCKSSSKSCATN 34
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 25.9 bits (55), Expect = 3.0
Identities = 16/111 (14%), Positives = 30/111 (27%), Gaps = 10/111 (9%)
Query: 49 LVG---VGKSSLLIRFS-DNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDT------A 98
+ G GKSSLL + + I D I ++G + +
Sbjct: 6 IAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDE 65
Query: 99 GQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRI 149
+ V+ + D T+ + + W I +
Sbjct: 66 VERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPIT 116
>d1yq2a4 b.30.5.1 (A:722-1023) beta-Galactosidase, domain 5
{Arthrobacter sp. c2-2 [TaxId: 192168]}
Length = 302
Score = 25.8 bits (56), Expect = 3.1
Identities = 13/87 (14%), Positives = 26/87 (29%)
Query: 63 DNTFSGSYITTIGVDFKIRTIDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 122
DN + D + + +W AG +R G+ V
Sbjct: 49 DNDRGAGFGAYGPGDPWLNSGRGVPAPSSEAVWKQAGLDRLTRRVEDVAALPDGIRVRTR 108
Query: 123 VTSGETFANVKRWLHEIENNCEVVNRI 149
+ ++ +V + + E+ RI
Sbjct: 109 YAAADSTHSVAVEENWQLDGGELCLRI 135
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 25.9 bits (56), Expect = 3.4
Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 8/101 (7%)
Query: 51 GVGKSSLL------IRFSDNTFSGSYITTIGVDFKIRTIDVN-GEKVKLQIWDTAGQERF 103
GVGKSS + S + F + V +N + L
Sbjct: 42 GVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMAL 101
Query: 104 RTITS-TYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNC 143
I S + ++ V + + K I ++
Sbjct: 102 NIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSF 142
>d1pvta_ c.74.1.1 (A:) Putative sugar-phosphate aldolase {Thermotoga
maritima [TaxId: 2336]}
Length = 232
Score = 25.6 bits (55), Expect = 3.6
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 7/43 (16%)
Query: 115 HGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLN 157
HGV+ G+ A + +E E++ + L LG N
Sbjct: 194 HGVVAF-----GKDVAEAYDRVEILEKAAEIL--LRVLSLGRN 229
>d1ddfa_ a.77.1.2 (A:) Fas {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 24.9 bits (54), Expect = 4.2
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 150 LGLRLGLNQRSIDEVNLCHRGSVD 173
+ G+N+ IDE+ +
Sbjct: 32 FVRKNGVNEAKIDEIKNDNVQDTA 55
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 25.1 bits (53), Expect = 4.7
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 42 QKSSFLQLVG---VGKSSLLIRFSDNTFS 67
S F+ +VG VGKS+LL +
Sbjct: 3 TYSGFVAIVGKPNVGKSTLLNNLLGVKVA 31
>d1vpza_ b.151.1.1 (A:) Carbon storage regulator homolog, CsrA
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 57
Score = 23.4 bits (51), Expect = 5.1
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 74 IGVDFKIRTIDVNGEKVKLQI 94
+G D + + V G +V++ +
Sbjct: 16 VGDDVTVTVLGVKGNQVRIGV 36
>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX
{Salmonella typhimurium [TaxId: 90371]}
Length = 117
Score = 24.5 bits (52), Expect = 5.1
Identities = 6/36 (16%), Positives = 16/36 (44%)
Query: 83 IDVNGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 118
D+ G K+ L ++D+ + ++ T + +
Sbjct: 5 FDIGGTKIALGVFDSTRRLQWEKRVPTPHTSYSAFL 40
>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 114
Score = 24.6 bits (53), Expect = 5.5
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 79 KIRTIDVNGEKVKLQIWDTAGQERFRT 105
I TID+ G +K G+ +T
Sbjct: 2 TIATIDIGGTGIKFASLTPDGKILDKT 28
>d1e4cp_ c.74.1.1 (P:) L-fuculose-1-phosphate aldolase {Escherichia
coli [TaxId: 562]}
Length = 206
Score = 24.8 bits (53), Expect = 5.8
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 115 HGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQRSIDEV 164
HG+I HE+E ++ L + + S +E+
Sbjct: 155 HGLIAC-----EVNLEKALWLAHEVEVLAQLYLTTLAITDPVPVLSDEEI 199
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 24.6 bits (52), Expect = 6.7
Identities = 23/117 (19%), Positives = 35/117 (29%), Gaps = 21/117 (17%)
Query: 49 LVG---VGKSSLLIRFSDNTFSGSYIT----TIGVDFKIRTIDVNGEKVKLQIWDTAG-- 99
+VG VGKS+LL N G + + ++ + +I DTAG
Sbjct: 5 IVGKPNVGKSTLL-----NRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR 59
Query: 100 -------QERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRI 149
+ T V+ V D +S + K VV
Sbjct: 60 SETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINK 116
>d1k0wa_ c.74.1.1 (A:) L-ribulose-5-phosphate 4-epimerase
{Escherichia coli [TaxId: 562]}
Length = 223
Score = 24.9 bits (53), Expect = 6.9
Identities = 6/49 (12%), Positives = 13/49 (26%), Gaps = 7/49 (14%)
Query: 115 HGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRILGLRLGLNQRSIDE 163
HG G+ + +E + I +L + +
Sbjct: 171 HGPFAW-----GKNAEDAVHNAIVLEEVAYMG--IFCRQLAPQLPDMQQ 212
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 24.7 bits (52), Expect = 8.0
Identities = 14/135 (10%), Positives = 32/135 (23%), Gaps = 14/135 (10%)
Query: 49 LVG---VGKSSLLIRFSDNTFSGSYITTIGVDFKIR---------TIDVNGEKVKLQIWD 96
G VGKS+L+ R + + +
Sbjct: 5 FAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQ 64
Query: 97 TAGQERFRTITSTYYRGTHGVIVVYDVTSGETFANVKRWLHEIENNCEVVNRI--LGLRL 154
++ + ++V D + EI + E + L +
Sbjct: 65 ERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPT 124
Query: 155 GLNQRSIDEVNLCHR 169
+ +D++
Sbjct: 125 IVAVNKLDKIKNVQE 139
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.405
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 710,660
Number of extensions: 31803
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 84
Length of query: 188
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,309,196
Effective search space: 141393168
Effective search space used: 141393168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.7 bits)