BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14174
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 72/88 (81%)
Query: 133 ETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVE 192
++VKI++LVK+ EPLGATIK DE++G I+VAR+ GGAADRSGLIHVGDE+ EVNGI VE
Sbjct: 3 DSVKIIRLVKNREPLGATIKKDEQTGAIIVARIXRGGAADRSGLIHVGDELREVNGIPVE 62
Query: 193 GKTPGDVLKILQSSEGTITFKLIPADNK 220
K P ++++IL S+G ITFK+IP +
Sbjct: 63 DKRPEEIIQILAQSQGAITFKIIPGSKE 90
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 64/88 (72%), Gaps = 3/88 (3%)
Query: 133 ETVKIVQLVKSNE-PLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINV 191
ETVKIV++ K+ + PLGAT++ + +S ++++R++ GGAA++SGL+H GDEV E+NGI +
Sbjct: 24 ETVKIVRIEKARDIPLGATVRNEMDS--VIISRIVKGGAAEKSGLLHEGDEVLEINGIEI 81
Query: 192 EGKTPGDVLKILQSSEGTITFKLIPADN 219
GK +V +L GT+TF LIP+
Sbjct: 82 RGKDVNEVFDLLSDMHGTLTFVLIPSSG 109
>pdb|1KWA|A Chain A, Human CaskLIN-2 Pdz Domain
pdb|1KWA|B Chain B, Human CaskLIN-2 Pdz Domain
Length = 88
Score = 78.6 bits (192), Expect = 3e-15, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 62/91 (68%), Gaps = 7/91 (7%)
Query: 136 KIVQLVK-SNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGK 194
++VQ K ++EP+G T+K +E + +VAR+MHGG R G +HVGDE+ E+NGI+V +
Sbjct: 3 RLVQFQKNTDEPMGITLKMNELN-HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQ 61
Query: 195 TPGDVLKILQSSEGTITFKLIPADNKLGYRE 225
T + K+L+ G+ITFK++P+ YRE
Sbjct: 62 TVEQLQKMLREMRGSITFKIVPS-----YRE 87
>pdb|2EV8|A Chain A, Solution Structure Of The Erythroid P55 Pdz Domain
Length = 97
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 135 VKIVQLVK-SNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
V+++Q K + EP+G T+K +E+ VAR++HGG R G +HVGDE+ E+NG NV
Sbjct: 13 VRLIQFEKVTEEPMGITLKLNEKQS-CTVARILHGGMIHRQGSLHVGDEILEINGTNVTN 71
Query: 194 KTPGDVLKILQSSEGTITFKLIP 216
+ + K ++ ++G I+ K+IP
Sbjct: 72 HSVDQLQKAMKETKGMISLKVIP 94
>pdb|2EJY|A Chain A, Solution Structure Of The P55 Pdz T85c Domain Complexed
With The Glycophorin C F127c Peptide
Length = 97
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Query: 135 VKIVQLVK-SNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
V+++Q K + EP+G +K +E+ VAR++HGG R G +HVGDE+ E+NG NV
Sbjct: 13 VRLIQFEKVTEEPMGICLKLNEKQS-CTVARILHGGMIHRQGSLHVGDEILEINGTNVTN 71
Query: 194 KTPGDVLKILQSSEGTITFKLIP 216
+ + K ++ ++G I+ K+IP
Sbjct: 72 HSVDQLQKAMKETKGMISLKVIP 94
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 138 VQLVKSNEPLGATIK-TDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTP 196
V+L + PLG TI T+E I+++ + GG A+R+G IH+GD + +N +++GK
Sbjct: 9 VELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPL 68
Query: 197 GDVLKILQSSEGTITFKL 214
+ + +LQ + T+T K+
Sbjct: 69 SEAIHLLQMAGETVTLKI 86
>pdb|2E7K|A Chain A, Solution Structure Of The Pdz Domain From Human Maguk P55
Subfamily Member 2
Length = 91
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 143 SNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKI 202
+ E LG T + E G++V+AR++HGG + GL+HVGD + EVNG V G P + ++
Sbjct: 16 AGEHLGVTFRV--EGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQEL 72
Query: 203 LQSSEGTITFKLIPA 217
L+++ G++ K++
Sbjct: 73 LRNASGSVILKILSG 87
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 12/105 (11%)
Query: 128 VDDEEETVKIVQLVK--SNEPLGATIKTD----------EESGKIVVARVMHGGAADRSG 175
VD ET + V+L+K S++PLG I+ E+ I ++R++ GG A+ +G
Sbjct: 24 VDIVPETHRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTG 83
Query: 176 LIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPADNK 220
L+ V DEV EVNGI V GKT V ++ ++ + + PA+ +
Sbjct: 84 LLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPANQR 128
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 37/183 (20%)
Query: 119 RLPEIPQELVDDEE---ETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSG 175
R + ++L+ +E+ E +IV + + + LG I E+ I ++ ++ GG AD SG
Sbjct: 290 RYSPVAKDLLGEEDIPREPRRIV-IHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG 348
Query: 176 LIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITF--KLIP----------------- 216
+ GD++ VNG+++ + L+++ T+T + P
Sbjct: 349 ELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQL 408
Query: 217 ADNKLGYRESKIR--------VRAHFDYDASSDPYIPCK--DAGLSFNKGDILHVVSQDD 266
++ LG + +R +RA FDYD + D C LSF GD+LHV+ D
Sbjct: 409 MNSSLGSGTASLRSNPKRGFYIRALFDYDKTKD----CGFLSQALSFRFGDVLHVIDAGD 464
Query: 267 AYW 269
W
Sbjct: 465 EEW 467
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 133 ETVKIVQLVKSNEPLGATIKTD------EESGKIVVARVMHGGAADRSGLIHVGDEVCEV 186
E V ++L+K + LG +I I V +++ GGAA + G + +GD++ V
Sbjct: 153 EKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV 212
Query: 187 NGINVEGKTPGDVLKILQSSEGTITFKLIPADN 219
N + +E D + L+++ + K+ N
Sbjct: 213 NSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSN 245
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 12/105 (11%)
Query: 128 VDDEEETVKIVQLVK--SNEPLGATIKTD----------EESGKIVVARVMHGGAADRSG 175
VD ET + V+L K S++PLG I+ E+ I ++R++ GG A+ +G
Sbjct: 24 VDIVPETHRRVRLCKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTG 83
Query: 176 LIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPADNK 220
L+ V DEV EVNGI V GKT V ++ ++ + + PA+ +
Sbjct: 84 LLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPANQR 128
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 137 IVQLVKSNEPLGATI-KTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
+V+L K++E LG I E++ I ++RV+ GG ADR G + GD++ VNG++VEG+
Sbjct: 8 VVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQ 67
Query: 196 PGDVLKILQSSEGTITF 212
+++L++++G++
Sbjct: 68 HEKAVELLKAAQGSVKL 84
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 12/100 (12%)
Query: 133 ETVKIVQLVK--SNEPLGATIKTD----------EESGKIVVARVMHGGAADRSGLIHVG 180
ET + V+L+K S++PLG I+ E+ I ++R++ GG A+ +GL+ V
Sbjct: 3 ETHRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVN 62
Query: 181 DEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPADNK 220
DEV EVNGI V GKT V ++ ++ + + PA+ +
Sbjct: 63 DEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPANQR 102
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 12/98 (12%)
Query: 133 ETVKIVQLVK--SNEPLGATIKTD----------EESGKIVVARVMHGGAADRSGLIHVG 180
ET + V+L+K S++PLG I+ E+ I ++R++ GG A+ +GL+ V
Sbjct: 1 ETHRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVN 60
Query: 181 DEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPAD 218
DEV EVNGI V GKT V ++ ++ + + PA+
Sbjct: 61 DEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPAN 98
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 136 KIVQLVKSNEPLGATIKTDEESG-KIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGK 194
K++ L + +E LG +I +E G I+++ + G ADR G +HVGD + VNG+N+
Sbjct: 30 KVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDT 89
Query: 195 TPGDVLKILQSSEGTITFKLI 215
+ + IL G I F+++
Sbjct: 90 KHKEAVTILSQQRGEIEFEVV 110
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 12/105 (11%)
Query: 128 VDDEEETVKIVQLVK--SNEPLGATIKTD----------EESGKIVVARVMHGGAADRSG 175
VD ET + V+L K + +PLG I+ E+ I ++R++ GG A +G
Sbjct: 23 VDILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTG 82
Query: 176 LIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPADNK 220
L+ V DEV EVNGI V GK+ V ++ ++ + + PA+ +
Sbjct: 83 LLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR 127
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 136 KIVQLVKSNEPLGATIKTDEESG-KIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGK 194
K++ L + +E LG +I +E G I+++ + G ADR G +HVGD + VNG+N+
Sbjct: 5 KVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDT 64
Query: 195 TPGDVLKILQSSEGTITFKLI 215
+ + IL G I F+++
Sbjct: 65 KHKEAVTILSQQRGEIEFEVV 85
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 136 KIVQLVKSNEPLGATIKTDEESG-KIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGK 194
K++ L + +E LG +I +E G I+++ + G ADR G +HVGD + VNG+N+
Sbjct: 12 KVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDT 71
Query: 195 TPGDVLKILQSSEGTITFKLI 215
+ + IL G I F+++
Sbjct: 72 KHKEAVTILSQQRGEIEFEVV 92
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 19/106 (17%)
Query: 136 KIVQLVKSNEPLGATIKTD-EESGKIV------------VARVMHGGAADRSGLIHVGDE 182
++V++VKS G ++ E G++ V+ V+ GGAADR+G + GD
Sbjct: 8 RVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDR 66
Query: 183 VCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPADNKLGYRESKI 228
+ EVNG+NVEG T V+ ++++ E + ++ ++ ESK+
Sbjct: 67 ILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVES-----ESKV 107
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 17/106 (16%)
Query: 136 KIVQLVKSNEPLGATIKTD-EESGKIV------------VARVMHGGAADRSGLIHVGDE 182
++V++VKS G ++ E G++ V+ V+ GGAADR+G + GD
Sbjct: 8 RVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDR 66
Query: 183 VCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPADNKLGYRESKI 228
+ EVNG+NVEG T V+ ++++ E + ++ G ESK+
Sbjct: 67 ILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVG---GESESKV 109
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Query: 147 LGATIKTDEESG-KIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQS 205
LG +++ E G I V++V G +A+R+GL VGD++ EVNG+++E T G +K+L S
Sbjct: 24 LGFSVRGGSEHGLGIFVSKVEEGSSAERAGLC-VGDKITEVNGLSLESTTMGSAVKVLTS 82
Query: 206 S 206
S
Sbjct: 83 S 83
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
Length = 101
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 14/85 (16%)
Query: 136 KIVQLVKSNEPLGATIKTD-EESGKIV------------VARVMHGGAADRSGLIHVGDE 182
++V++VKS G ++ E G++ V+ V+ GGAADR+G + GD
Sbjct: 8 RVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDR 66
Query: 183 VCEVNGINVEGKTPGDVLKILQSSE 207
+ EVNG+NVEG T V+ ++++ E
Sbjct: 67 ILEVNGVNVEGATHKQVVDLIRAGE 91
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558)
Length = 111
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 6/81 (7%)
Query: 138 VQLVKSNEPLGATIKTDE----ESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
+QL K E LG +I + + S I V ++ GAA + G + GD + EVNG+++ G
Sbjct: 15 IQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAG 74
Query: 194 KTPGDVLKILQSS--EGTITF 212
K+ +V+ +L+S+ EGT++
Sbjct: 75 KSQEEVVSLLRSTKMEGTVSL 95
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 6/81 (7%)
Query: 138 VQLVKSNEPLGATIKTDE----ESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
+QL K E LG +I + + S I V ++ GAA + G + GD + EVNG+++ G
Sbjct: 9 IQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAG 68
Query: 194 KTPGDVLKILQSS--EGTITF 212
K+ +V+ +L+S+ EGT++
Sbjct: 69 KSQEEVVSLLRSTKMEGTVSL 89
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 6/81 (7%)
Query: 138 VQLVKSNEPLGATIKTDE----ESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
+QL K E LG +I + + S I V ++ GAA + G + GD + EVNG+++ G
Sbjct: 34 IQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVG 93
Query: 194 KTPGDVLKILQSS--EGTITF 212
K+ +V+ +L+S+ EGT++
Sbjct: 94 KSQEEVVSLLRSTKMEGTVSL 114
>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold
Proteins As Specific Phospho-Protein Binding Modules
Length = 296
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVV-SQDDAYW 269
VRA FDYD + D +P + GL+F GDILHV+ + DD +W
Sbjct: 14 VRALFDYDKTKDSGLPSQ--GLNFKFGDILHVINASDDEWW 52
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 160 IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITF 212
I V V GGAA R G I V D++ EV+GI++ G T +L++++G + F
Sbjct: 113 IFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRF 165
>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
Length = 292
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVV-SQDDAYW 269
VRA FDYD + D +P + GL F GDILHV + DD +W
Sbjct: 8 VRALFDYDPNRDDGLPSR--GLPFKHGDILHVTNASDDEWW 46
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 135 VKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGK 194
V+ V+L+ LG I + SG +VV ++ GG ADR G + GD + ++ G NV+G
Sbjct: 16 VEEVELINDGSGLGFGIVGGKTSG-VVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGM 74
Query: 195 TPGDVLKILQ 204
T V ++L+
Sbjct: 75 TSEQVAQVLR 84
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 160 IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPADN 219
I V +V GG A +GL GD + +VNG +V GKT V+ ++Q+S+ T+ ++P D+
Sbjct: 63 IFVKQVKEGGPAFEAGLC-TGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDS 121
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With Ra-Gef2
Peptide
Length = 96
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 138 VQLVKSNEPLG----ATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
V+L K++ LG + T G I V V+ GAA+ G IH GD V VNG+++EG
Sbjct: 9 VELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEG 68
Query: 194 KTPGDVLKILQSS 206
T ++ L+++
Sbjct: 69 ATHKQAVETLRNT 81
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 138 VQLVKSNEPLG----ATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
V+L K++ LG + T G I V V+ GAA+ G IH GD V VNG+++EG
Sbjct: 9 VELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEG 68
Query: 194 KTPGDVLKILQSS 206
T ++ L+++
Sbjct: 69 ATHKQAVETLRNT 81
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain
Of Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 138 VQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPG 197
V++ K +EPLG +I + E+ G I V++V G A ++GL GD++ E NGIN+ T
Sbjct: 23 VKVQKGSEPLGISIVSGEKGG-IYVSKVTVGSIAHQAGL-EYGDQLLEFNGINLRSATEQ 80
Query: 198 DVLKILQSSEGTITF 212
I+ TIT
Sbjct: 81 QARLIIGQQCDTITI 95
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 133 ETVKIVQLVKSNEPLGATIKTD---EESGKIV-----VARVMHGGAADRSGLIHVGDEVC 184
+T +V K NE G I + ESG + + R++ G ADR + VGD +
Sbjct: 10 QTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRIL 69
Query: 185 EVNGINVEGKTPGDVLKILQSSEGTITFKLIPAD 218
VNG ++ D++K+++ + ++T ++IP +
Sbjct: 70 AVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQE 103
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 138 VQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPG 197
V L K + LG I E+ I V+ ++ GG AD SG + GD++ VNGI++ G +
Sbjct: 7 VVLHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHE 66
Query: 198 DVLKILQSSEGTIT 211
L+ + T+T
Sbjct: 67 QAAAALKGAGQTVT 80
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 138 VQLVKSNEPLG----ATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
V+L K++ LG + T G I V ++ GAA+ G IH GD V VNG+++EG
Sbjct: 16 VELAKTDGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG 75
Query: 194 KTPGDVLKILQSS 206
T ++ L+++
Sbjct: 76 ATHKQAVETLRNT 88
>pdb|3LRA|A Chain A, Structural Basis For Assembling A Human Tripartite Complex
Dlg1-Mpp7- Mals3
Length = 254
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 85 LNDDCKELFVLLQRPNLQGLLCAHDAVAQKDY 116
LN + +EL LL +PN++ LL HD VAQK+Y
Sbjct: 152 LNSEIRELLKLLSKPNVKALLSVHDTVAQKNY 183
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 138 VQLVKSNEPLG----ATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
V+L K++ LG + T G I V ++ GAA+ G IH GD V VNG+++EG
Sbjct: 8 VELAKTDGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG 67
Query: 194 KTPGDVLKILQSS 206
T ++ L+++
Sbjct: 68 ATHKQAVETLRNT 80
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 27/34 (79%)
Query: 160 IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
+++A +MHGG A++SG +++GD++ +NG ++ G
Sbjct: 31 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 64
>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 103
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 138 VQLVKSNEPLGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
V L + G I +E G+ I++ V+ G+ADR G +H GDE+ V+GI V GKT
Sbjct: 13 VHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKT 71
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 160 IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITF 212
I V V GGAA R G I V D++ EV+GI++ G T +L++++G + F
Sbjct: 37 IFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRF 89
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 160 IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPAD 218
I V V GAA G + GD++ VNG ++EG T + + IL+ ++GT+T ++ +D
Sbjct: 55 IYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSD 113
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 130 DEEETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGI 189
D E KI+ L K + LG I E+ I V+ ++ GG AD SG + GD + VNG+
Sbjct: 12 DAREPRKII-LHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGV 70
Query: 190 NVEGKTPGDVLKILQSSEGTIT 211
N+ T L+ + ++T
Sbjct: 71 NLRNATHEQAAAALKRAGQSVT 92
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 160 IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITF 212
I V V GGAA R G I V D++ EV+GI++ G T +L++++G + F
Sbjct: 42 IFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRF 94
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 137 IVQLVKSNEPLGATIKTDEES-------GKIVVARVMHGGAADRSGLIHVGDEVCEVNGI 189
+ L +S LG +I + S I V+R+ GGAA R+G + VGD V +NG+
Sbjct: 10 VACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGV 69
Query: 190 NV 191
+V
Sbjct: 70 DV 71
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 138 VQLVKSNEPLG---------ATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNG 188
V+L K++ LG + T G I V V+ GAA+ G IH GD V VNG
Sbjct: 13 VELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNG 72
Query: 189 INVEGKTPGDVLKILQSS 206
+++EG T ++ L+++
Sbjct: 73 VSLEGATHKQAVETLRNT 90
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 111 VAQKDYYPRLPEIPQELVDDE------EETVKIVQLVK-SNEPLGATIKTDEESGKIVVA 163
++QK+Y + QE+ +D+ E K +QL K E LG + +++A
Sbjct: 164 LSQKEYSDIIN--TQEMYNDDLIHFSNSENCKELQLEKHKGEILGVVVVESSILPTVILA 221
Query: 164 RVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
+M+GG A RSG + +GD++ +NG ++ G
Sbjct: 222 NMMNGGPAARSGKLSIGDQIMSINGTSLVG 251
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 129 DDEEETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNG 188
D E KI+ L K + LG I E+ I V+ ++ GG AD SG + GD + VNG
Sbjct: 8 DFTREPRKII-LHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNG 66
Query: 189 INVEGKTPGDVLKILQSSEGTIT 211
+N+ T L+ + ++T
Sbjct: 67 VNLRNATHEQAAAALKRAGQSVT 89
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 138 VQLVKSNEPLG---------ATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNG 188
V+L K++ LG + T G I V ++ GAA+ G IH GD V VNG
Sbjct: 8 VELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNG 67
Query: 189 INVEGKTPGDVLKILQSS 206
+++EG T ++ L+++
Sbjct: 68 VSLEGATHKQAVETLRNT 85
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid Beta
A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 27/34 (79%)
Query: 160 IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
+++A +MHGG A++SG +++GD++ +NG ++ G
Sbjct: 35 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 68
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 27/34 (79%)
Query: 160 IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
+++A +MHGG A++SG +++GD++ +NG ++ G
Sbjct: 31 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 64
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 161 VVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPA 217
++ +M GG A+R G + VG + E+NG +V ++ IL ++ G I K +PA
Sbjct: 115 IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA 170
>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
Length = 170
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 138 VQLVKSNEPLGATI-------KTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGIN 190
V+L K +E LG +I E I V V GGAA R G I V D + EV+G +
Sbjct: 84 VELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTS 143
Query: 191 VEGKTPGDVLKILQSSEGTITFKL 214
+ G T +L++++G + F +
Sbjct: 144 LVGVTQSFAASVLRNTKGRVRFMI 167
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad-
Like Protein
Length = 129
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 126 ELV--DDEEETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEV 183
ELV D + ++IV V T T E SG I V V+ G AA +G I V D++
Sbjct: 20 ELVRKDGQSLGIRIVGYV-------GTSHTGEASG-IYVKSVIPGSAAYHNGHIQVNDKI 71
Query: 184 CEVNGINVEGKTPGDVLKILQSSEGTITFKLI 215
V+G+N++G DV+++L+++ + L+
Sbjct: 72 VAVDGVNIQGFANHDVVEVLRNAGQVVHLTLV 103
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 38.5 bits (88), Expect = 0.004, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 136 KIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
++ +LV+ + G + ++ + RV G A+ + L GD + EVNG+NVEG+T
Sbjct: 3 RLCRLVRGEQGYGFHLHGEKGRRGQFIRRVEPGSPAEAAAL-RAGDRLVEVNGVNVEGET 61
Query: 196 PGDVLKILQSSEG 208
V++ +++ EG
Sbjct: 62 HHQVVQRIKAVEG 74
>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
Length = 170
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 138 VQLVKSNEPLGATI-------KTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGIN 190
V+L K +E LG +I E I V V GGAA R G I V D + EV+G +
Sbjct: 84 VELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTS 143
Query: 191 VEGKTPGDVLKILQSSEGTITFKL 214
+ G T +L++++G + F +
Sbjct: 144 LVGVTQSFAASVLRNTKGRVRFMI 167
>pdb|1U39|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 80
Score = 38.1 bits (87), Expect = 0.005, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 161 VVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPA 217
++ +M GG A+R G + VG + E+NG +V ++ IL ++ G I K +PA
Sbjct: 25 IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA 80
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 145 EPLGATIKTDEESG-KIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKIL 203
E LG +++ E G + ++ ++ GG AD GL VGDE+ +NG ++ T +V+ ++
Sbjct: 96 EGLGLSVRGGLEFGCGLFISHLIKGGQADSVGL-QVGDEIVRINGYSISSCTHEEVINLI 154
Query: 204 QSSEGTITFKL 214
+ +E T++ K+
Sbjct: 155 R-TEKTVSIKV 164
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex
With Connexin-45 Peptide
Length = 468
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 27/141 (19%)
Query: 134 TVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
++K+V+ K + +G + + G I VA V+ A + GL GD++ VN ++
Sbjct: 1 SMKLVKFRKGDS-VGLRLAGGNDVG-IFVAGVLEDSPAAKEGL-EEGDQILRVNNVDFTN 57
Query: 194 ------------KTPGDVLKILQSSEGTITFKLIPADNKLGYRESKIRVRAHFDYDASSD 241
G+ + IL + + +++ +D +G +R HF+Y+ S
Sbjct: 58 IIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESD--VG---DSFYIRTHFEYEKES- 111
Query: 242 PYIPCKDAGLSFNKGDILHVV 262
PY GLSFNKG++ VV
Sbjct: 112 PY------GLSFNKGEVFRVV 126
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 142 KSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLK 201
K + LG +I + V+ ++ GG AD G + GD++ VNG +V T V
Sbjct: 13 KPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAA 72
Query: 202 ILQSSEGTITFKL 214
+L+ S GT+T ++
Sbjct: 73 LLKCSLGTVTLEV 85
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 27/141 (19%)
Query: 134 TVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
++K+V+ K + +G + + G I VA V+ A + GL GD++ VN ++
Sbjct: 9 SMKLVKFRKGDS-VGLRLAGGNDVG-IFVAGVLEDSPAAKEGL-EEGDQILRVNNVDFTN 65
Query: 194 KT------------PGDVLKILQSSEGTITFKLIPADNKLGYRESKIRVRAHFDYDASSD 241
G+ + IL + + +++ +D +G +R HF+Y+ S
Sbjct: 66 IIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESD--VG---DSFYIRTHFEYEKES- 119
Query: 242 PYIPCKDAGLSFNKGDILHVV 262
PY GLSFNKG++ VV
Sbjct: 120 PY------GLSFNKGEVFRVV 134
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 138 VQLVKSNEPLGATI--KTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
+++ K LG +I +D G I++ V GAA + G + GD++ EVNGI++ T
Sbjct: 8 IEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKAT 67
Query: 196 PGDVLKILQSSEGTITFKL 214
+ + +L+ + + L
Sbjct: 68 HDEAINVLRQTPQRVRLTL 86
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
Length = 97
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 156 ESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQ 204
+S +V+ V GG ADR G I GD + V+GI + G T + + IL+
Sbjct: 30 KSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILK 78
>pdb|2G5M|B Chain B, Spinophilin Pdz Domain
Length = 113
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 138 VQLVKSNEPLGATI-------KTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGIN 190
V+L K +E LG +I E I V V GGAA R G I V D + EV+G +
Sbjct: 8 VELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTS 67
Query: 191 VEGKTPGDVLKILQSSEGTITFKL 214
+ G T +L++++G + F +
Sbjct: 68 LVGVTQSFAASVLRNTKGRVRFMI 91
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
Length = 194
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 27/141 (19%)
Query: 134 TVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
++K+V+ K + +G + + G I VA V+ A + GL GD++ VN ++
Sbjct: 2 SMKLVKFRKGDS-VGLRLAGGNDVG-IFVAGVLEDSPAAKEGL-EEGDQILRVNNVDFTN 58
Query: 194 KT------------PGDVLKILQSSEGTITFKLIPADNKLGYRESKIRVRAHFDYDASSD 241
G+ + IL + + +++ +D +G +R HF+Y+ S
Sbjct: 59 IIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESD--VG---DSFYIRTHFEYEKES- 112
Query: 242 PYIPCKDAGLSFNKGDILHVV 262
PY GLSFNKG++ VV
Sbjct: 113 PY------GLSFNKGEVFRVV 127
>pdb|2PKU|A Chain A, Solution Structure Of Pick1 Pdz In Complex With The
Carboxyl Tail Peptide Of Glur2
Length = 87
Score = 36.6 bits (83), Expect = 0.014, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 160 IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTIT 211
+ + +V A G + GDE+ VNG +++GKT +V K++Q +G +T
Sbjct: 30 LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 81
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 138 VQLVKSNEPLGATI------KTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINV 191
V+L K+ + LG TI K E SG I V + A + G I +GD++ V+G N+
Sbjct: 8 VELTKNVQGLGITIAGYIGDKKLEPSG-IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNL 66
Query: 192 EGKTPGDVLKILQSSEGTITFKLI 215
+G T +++L+ + T+ L+
Sbjct: 67 QGFTNQQAVEVLRHTGQTVLLTLM 90
>pdb|2YT7|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3
Length = 101
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 161 VVARVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
V+A ++HGG A+RSG + +GD + +NG ++ G
Sbjct: 40 VIANLLHGGPAERSGALSIGDRLTAINGTSLVG 72
>pdb|1Y7N|A Chain A, Solution Structure Of The Second Pdz Domain Of The Human
Neuronal Adaptor X11alpha
Length = 90
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 161 VVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPA 217
++ +M GG A+R G + VG + E+NG +V ++ IL ++ G I K +PA
Sbjct: 34 IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA 89
>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human
Interleukin- 16
Length = 119
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 154 DEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEG----- 208
D E+ I V RV G A + G I G+EV +NG +++G T D L IL+ +
Sbjct: 38 DLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAV 97
Query: 209 TITFKLIP 216
+T KL P
Sbjct: 98 IVTRKLTP 105
>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain
Length = 95
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 154 DEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQ---SSEGTI 210
D G I + +M GGA G I GD + +VN +N E + D +++L+ S G I
Sbjct: 22 DRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVLREIVSQTGPI 81
Query: 211 TFKLIPA 217
+ + A
Sbjct: 82 SLTVAKA 88
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 154 DEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNG 188
D GK+VV+ V GGAA+R G + GDE+ +NG
Sbjct: 39 DSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAING 73
>pdb|3GGE|A Chain A, Crystal Structure Of The Pdz Domain Of Pdz
Domain-Containing Protein Gipc2
pdb|3GGE|B Chain B, Crystal Structure Of The Pdz Domain Of Pdz
Domain-Containing Protein Gipc2
pdb|3GGE|C Chain C, Crystal Structure Of The Pdz Domain Of Pdz
Domain-Containing Protein Gipc2
Length = 95
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 136 KIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
K V + KS + LG TI TD G + R+ GG D I VGD + +NG N+ G
Sbjct: 7 KEVNVYKSEDSLGLTI-TDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWR 65
Query: 196 PGDV 199
DV
Sbjct: 66 HYDV 69
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 156 ESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQ 204
+S +V+ V GG ADR G I GD + V+GI + G T + + IL+
Sbjct: 133 KSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILK 181
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 137 IVQLVKS-NEPLGATIKTD-EESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINV 191
+V+L+K LG T+ ++ GK V+ + GG A RS + VGD + VNGIN+
Sbjct: 10 VVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINL 66
>pdb|2GZV|A Chain A, The Cystal Structure Of The Pdz Domain Of Human Pick1
(Casp Target)
Length = 114
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 160 IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPADN 219
+ + +V A G + GDE+ VNG +++GKT +V K++Q +G +T N
Sbjct: 52 LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY----N 107
Query: 220 KLGYRE 225
KL Y +
Sbjct: 108 KLQYYK 113
>pdb|3HPK|A Chain A, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
pdb|3HPK|B Chain B, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
Length = 125
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 160 IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITF 212
+ + +V A G + GDE+ VNG +++GKT +V K++Q +G +T
Sbjct: 47 LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 99
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 133 ETVKIVQLVKSNEPLGATIKTD------EESGKIVVARVMHGGAADRSGLIHVGDEVCEV 186
E V ++L+K + LG +I I V +++ GGAA + G + +GD++ V
Sbjct: 106 EKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV 165
Query: 187 NGINVEGKTPGDVLKILQSSEGTITFKLIPADN 219
N + +E D + L+++ + K+ N
Sbjct: 166 NSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSN 198
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 138 VQLVKSNEPLGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEVNG 188
V+L + + G +++ E + V R+ G A+RSG + +GDE+ E+NG
Sbjct: 28 VELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEING 79
>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With Its
Inhibitor
Length = 90
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 154 DEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQ---SSEGTI 210
D G I + +M GGA G I GD + +VN +N E + D +++L+ S G I
Sbjct: 25 DRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVLREIVSQTGPI 84
Query: 211 TFKL 214
+ +
Sbjct: 85 SLTV 88
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 133 ETVKIVQLVKSNEPLGATIKTD------EESGKIVVARVMHGGAADRSGLIHVGDEVCEV 186
E V ++L+K + LG +I I V +++ GGAA + G + +GD++ V
Sbjct: 96 EKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV 155
Query: 187 NGINVEGKTPGDVLKILQSSEGTITFKLIPADN 219
N + +E D + L+++ + K+ N
Sbjct: 156 NSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSN 188
>pdb|1NTE|A Chain A, Crystal Structure Analysis Of The Second Pdz Domain Of
Syntenin
pdb|1R6J|A Chain A, Ultrahigh Resolution Crystal Structure Of Syntenin Pdz2
Length = 82
Score = 34.3 bits (77), Expect = 0.073, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 156 ESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLI 215
++GKI ++ +A R+GL+ +CE+NG NV G + IL +S +T ++
Sbjct: 23 KNGKIT--SIVKDSSAARNGLL-TEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM 79
Query: 216 PA 217
PA
Sbjct: 80 PA 81
>pdb|2KV8|A Chain A, Solution Structure Ofrgs12 Pdz Domain
Length = 83
Score = 34.3 bits (77), Expect = 0.073, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 161 VVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTI 210
V++ VM G AD GL GD++ VN INV+ + DV+K++ G +
Sbjct: 26 VLSCVMRGSPADFVGL-RAGDQILAVNEINVKKASHEDVVKLIGKCSGVL 74
>pdb|2YT8|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3 (Neuron-
Specific X11l2 Protein) (Neuronal Munc18-1-Interacting
Protein 3) (Mint-3) (Adapter Protein X11gamma)
Length = 94
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 134 TVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
T I+ + E LG ++ ++ ++ GG A+R G I VG + E+NG +V
Sbjct: 9 TTAIIHRPHAREQLGFCVEDG------IICSLLRGGIAERGG-IRVGHRIIEINGQSVVA 61
Query: 194 KTPGDVLKILQSSEGTITFKLIPA 217
++++L + G + K +PA
Sbjct: 62 TPHARIIELLTEAYGEVHIKTMPA 85
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 133 ETVKIVQLVKSNEPLGATIKTDEES------GKIVVARVMHGGAADRSGLIHVGDEVCEV 186
E V ++L+K + LG +I + I V +++ GGAA + G + +GD++ V
Sbjct: 2 EKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV 61
Query: 187 NGINVEGKTPGDVLKILQSSEGTITFKLIPADN 219
N + +E D + L+++ + K+ N
Sbjct: 62 NSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSN 94
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 127 LVDDEEETVKIVQLVKSNEPLGATIKTDE--ESGK---IVVARVMHGGAADRSGLIHVGD 181
L E+ T++I + LG ++K ++ E+G I + ++HGGAA + G + + D
Sbjct: 19 LESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMND 78
Query: 182 EVCEVNGINVEGKTPGDVLKILQSS---EGTI 210
++ VNG + GK+ + ++ L+ S EG I
Sbjct: 79 QLIAVNGETLLGKSNHEAMETLRRSMSMEGNI 110
>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of
Psd-95
pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
Length = 301
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
S +RA FDYD + D + LSF GD+LHV+ D W
Sbjct: 6 SGFYIRALFDYDKTKDCGFLSQ--ALSFRFGDVLHVIDAGDEEW 47
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 133 ETVKIVQLVKSNEPLGATIKTD------EESGKIVVARVMHGGAADRSGLIHVGDEVCEV 186
E V ++L+K + LG +I I V +++ GGAA + G + +GD++ V
Sbjct: 99 EKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV 158
Query: 187 NGINVEGKTPGDVLKILQSSEGTITFKLIPADN 219
N + +E D + L+++ + K+ N
Sbjct: 159 NSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSN 191
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 33.9 bits (76), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 142 KSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLK 201
+ + LG I E+ I ++ ++ GG AD SG + GD++ VNG+++ +
Sbjct: 22 RGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAI 81
Query: 202 ILQSSEGTIT 211
L+++ T+T
Sbjct: 82 ALKNAGQTVT 91
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 140 LVKSNEPLGATI-KTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGD 198
L KSN G TI DE + V V+ G A + G + GD + +N + V G T D
Sbjct: 25 LKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHAD 84
Query: 199 VLKILQS 205
V+K+ QS
Sbjct: 85 VVKLFQS 91
>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
Length = 295
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+RA FDYD + D + LSF GD+LHV+ D W
Sbjct: 4 IRALFDYDKTKDCGFLSQ--ALSFRFGDVLHVIDAGDEEW 41
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 142 KSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLK 201
+ + LG I E+ I ++ ++ GG AD SG + GD++ VNG+++ +
Sbjct: 22 RGSTGLGFNIIGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAI 81
Query: 202 ILQSSEGTIT 211
L+++ T+T
Sbjct: 82 ALKNAGQTVT 91
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad-
Like Protein
Length = 116
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 137 IVQLVKSNEPLGATI--KTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGK 194
I+++ K LG +I D IV+ V GAA R G + GD++ EVNG+++
Sbjct: 20 IIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNS 79
Query: 195 TPGDVLKILQSS 206
+ + + L+ +
Sbjct: 80 SHEEAITALRQT 91
>pdb|3LH5|A Chain A, Crystal Structure Of The Sh3-Guanylate Kinase Core Domain
Of Zo-1
Length = 251
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 7/33 (21%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVV 262
+R HF+Y+ S PY GLSFNKG++ VV
Sbjct: 6 IRTHFEYEKES-PY------GLSFNKGEVFRVV 31
>pdb|1ZL8|B Chain B, Nmr Structure Of L27 Heterodimer From C. Elegans Lin-7 And
H. Sapiens Lin-2 Scaffold Proteins
Length = 54
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 66 SNAMQISLEVLDVLLSRLALNDDCKELFVLLQRPNLQGLLCAHDAVAQKDY 116
S+A+Q + EVL+ + S N+D KEL +L +P+ LL HD VA + Y
Sbjct: 1 SDAVQRAKEVLEEI-SCYPENNDAKELKRILTQPHFMALLQTHDVVAHEVY 50
>pdb|2JJS|C Chain C, Structure Of Human Cd47 In Complex With Human Signal
Regulatory Protein (sirp) Alpha
pdb|2JJS|D Chain D, Structure Of Human Cd47 In Complex With Human Signal
Regulatory Protein (sirp) Alpha
pdb|2JJT|C Chain C, Structure Of Human Cd47 In Complex With Human Signal
Regulatory Protein (Sirp) Alpha
pdb|2JJT|D Chain D, Structure Of Human Cd47 In Complex With Human Signal
Regulatory Protein (Sirp) Alpha
pdb|2VSC|A Chain A, Structure Of The Immunoglobulin-Superfamily Ectodomain Of
Human Cd47
pdb|2VSC|B Chain B, Structure Of The Immunoglobulin-Superfamily Ectodomain Of
Human Cd47
pdb|2VSC|C Chain C, Structure Of The Immunoglobulin-Superfamily Ectodomain Of
Human Cd47
pdb|2VSC|D Chain D, Structure Of The Immunoglobulin-Superfamily Ectodomain Of
Human Cd47
Length = 127
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 149 ATIKTDEESGKIVVARVMHGGAA---DRSGLI-HVGDEVCEVNGINVEGKT 195
+T+ TD S KI V++++ G A+ D+S + H G+ CEV + EG+T
Sbjct: 57 STVPTDFSSAKIEVSQLLKGDASLKMDKSDAVSHTGNYTCEVTELTREGET 107
>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 115
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 147 LGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVN 187
LG +K ++++ ++ GGAA++SGLI GD + VN
Sbjct: 17 LGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVN 57
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 142 KSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLK 201
+ + LG I E I ++ ++ GG AD SG + GD++ VNG+++ +
Sbjct: 14 RGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAI 73
Query: 202 ILQSSEGTIT 211
L+++ T+T
Sbjct: 74 ALKNAGQTVT 83
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex
With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 33.5 bits (75), Expect = 0.12, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 147 LGATIKTDEESG-KIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQS 205
LG +IK E+ I+++++ G AAD++ + VGD + VNG ++ T + ++ L+
Sbjct: 14 LGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK 73
Query: 206 S 206
+
Sbjct: 74 T 74
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
Length = 111
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 175 GLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEG--TITFKLIPADNK 220
G + GDE+ VNG +++GKT +V K++Q +G TI + + AD K
Sbjct: 48 GTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPK 95
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 33.5 bits (75), Expect = 0.13, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 147 LGATIKTDEESG-KIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQS 205
LG +IK E+ I+++++ G AAD++ + VGD + VNG ++ T + ++ L+
Sbjct: 14 LGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK 73
Query: 206 S 206
+
Sbjct: 74 T 74
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 160 IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGT 209
I V +++GGAA + G + V D++ VNG ++ GK + ++ L+ S T
Sbjct: 38 IFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAMETLRRSMST 87
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 160 IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGT 209
I V +++GGAA + G + V D++ VNG ++ GK + ++ L+ S T
Sbjct: 41 IFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAMETLRRSMST 90
>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 112
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 147 LGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVN 187
LG +K ++++ ++ GGAA++SGLI GD + VN
Sbjct: 15 LGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVN 55
>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide
Synthase Pdz Domain Complexed With An Associated Peptide
Length = 127
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 147 LGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVN 187
LG +K ++++ ++ GGAA++SGLI GD + VN
Sbjct: 22 LGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVN 62
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 32/55 (58%)
Query: 160 IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
+V++ + G A R+G + +GD++ ++ I ++ + D ++ILQ E + K+
Sbjct: 137 LVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKI 191
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 148 GATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSE 207
G+ T+ S +++ + A+R G++ +GD V +NGI E T + ++L+ S
Sbjct: 26 GSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS- 84
Query: 208 GTITFKL 214
+IT K+
Sbjct: 85 -SITSKV 90
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 33.1 bits (74), Expect = 0.16, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
V+A FD+D P +D L F +GD +HV+ D W
Sbjct: 5 VQALFDFD-------PQEDGELGFRRGDFIHVMDNSDPNW 37
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 33.1 bits (74), Expect = 0.16, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
V+A FD+D P +D L F +GD +HV+ D W
Sbjct: 5 VQALFDFD-------PQEDGELGFRRGDFIHVMDNSDPNW 37
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 33.1 bits (74), Expect = 0.16, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
V+A FD+D P +D L F +GD +HV+ D W
Sbjct: 5 VQALFDFD-------PQEDGELGFRRGDFIHVMDNSDPNW 37
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 33.1 bits (74), Expect = 0.16, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
V+A FD+D P +D L F +GD +HV+ D W
Sbjct: 3 VQALFDFD-------PQEDGELGFRRGDFIHVMDNSDPNW 35
>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled 2
(Homologous To Drosophila Dsh)
Length = 100
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 158 GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQ 204
G I + +M GGA G I GD + +VN +N E + D +++L+
Sbjct: 33 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 142 KSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLK 201
+ + LG I E I ++ ++ GG AD SG + GD++ VNG+++ +
Sbjct: 19 RGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAI 78
Query: 202 ILQSSEGTIT 211
L+++ T+T
Sbjct: 79 ALKNAGQTVT 88
>pdb|1V62|A Chain A, Solution Structure Of The 3rd Pdz Domain Of Grip2
Length = 117
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 137 IVQLVKS-NEPLGATIKTDEESGKIVVA--RVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
+V++VK+ LG ++ T K V+ R+ DRSG +H GD + ++G ++E
Sbjct: 18 MVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEH 77
Query: 194 KTPGDVLKILQSSEGTITFKLIP 216
+ + K+L S + +++P
Sbjct: 78 CSLLEATKLLASISEKVRLEILP 100
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 162 VARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKIL--QSSEGTITFKL 214
+A+++ GG+A+++G + G +V E NGI + KT +V I+ QS E I +L
Sbjct: 53 IAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRL 107
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 160 IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
I V +++ GGAA + G + VGD + VN ++E T + + IL+++ + K+
Sbjct: 56 IYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKV 110
>pdb|3E17|A Chain A, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
pdb|3E17|B Chain B, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
Length = 88
Score = 32.7 bits (73), Expect = 0.24, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 152 KTDEESG-----KIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSS 206
+ +EE G +I V + G A + G +H GD + ++NG E + D K+++ S
Sbjct: 10 RANEEYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKS 69
Query: 207 EGTI 210
G +
Sbjct: 70 RGKL 73
>pdb|2OSG|A Chain A, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
pdb|2OSG|B Chain B, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
Length = 83
Score = 32.7 bits (73), Expect = 0.24, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 152 KTDEESG-----KIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSS 206
+ +EE G +I V + G A + G +H GD + ++NG E + D K+++ S
Sbjct: 10 RANEEYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKS 69
Query: 207 EGTI 210
G +
Sbjct: 70 RGKL 73
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 153 TDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTIT 211
TDE I +++V GAA R G + VG + EVN ++ G T G+ +++L+S T+T
Sbjct: 42 TDE---GIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLT 97
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 32.3 bits (72), Expect = 0.28, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 138 VQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINV 191
V L + + LG I E+ I ++ ++ GG AD SG + GD + VN +++
Sbjct: 8 VVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDL 61
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 133 ETVKIVQLVKSNEPLGATIKTDEES------GKIVVARVMHGGAADRSGLIHVGDEVCEV 186
E + ++L+K + LG +I + I V +++ GGAA + G + +GD++ V
Sbjct: 2 EKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 187 NGINVEGKTPGDVLKILQSSEGTITFKL 214
N +++E T + + L+++ + K+
Sbjct: 62 NSVSLEEVTHEEAVTALKNTSDFVYLKV 89
>pdb|2D92|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Inad-Like
Protein
Length = 108
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 135 VKIVQLVKSNEPLGATI-----KTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGI 189
VKIV+LVK + LG +I D IV+ ++ G A+RSG + GD + VN
Sbjct: 16 VKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEY 75
Query: 190 NVEGKTPGDVLKILQS 205
++ + + ++IL++
Sbjct: 76 CLDNTSLAEAVEILKA 91
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 156 ESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLI 215
++GKI ++ +A R+GL+ +CE+NG NV G + IL +S +T ++
Sbjct: 107 KNGKI--TSIVKDSSAARNGLL-TEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM 163
Query: 216 PA 217
PA
Sbjct: 164 PA 165
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 129 DDE--EETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEV 186
DDE E K+V L + + LG I E+ I ++ ++ GG AD SG + GD + V
Sbjct: 1 DDEITREPRKVV-LHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDRIISV 59
Query: 187 NGINVE 192
N +++
Sbjct: 60 NSVDLR 65
>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
pdb|3CBX|B Chain B, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
Length = 105
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 158 GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQ 204
G I + +M GGA G I GD + +VN +N E + D +++L+
Sbjct: 33 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz Binding
Motif
Length = 90
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 136 KIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
++ L K + G + +D+ + V G A RSGL D + EVNG NVEG
Sbjct: 6 RLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGL-RAQDRLIEVNGQNVEGLR 64
Query: 196 PGDVLKILQSSEGTITFKLIPADNKL 221
+V+ +++ E ++ +L
Sbjct: 65 HAEVVASIKAREDEARLLVVGPSTRL 90
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 133 ETVKIVQLVKSNEPLGATIKTDEES------GKIVVARVMHGGAADRSGLIHVGDEVCEV 186
E + ++L+K + LG +I + I V +++ GGAA + G + +GD++ V
Sbjct: 2 EKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 187 NGINVEGKTPGDVLKILQSSEGTITFKL 214
N + +E T + + L+++ + K+
Sbjct: 62 NSVGLEEVTHEEAVTALKNTSDFVYLKV 89
>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
pdb|3CBY|B Chain B, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
Length = 108
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 158 GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQ 204
G I + +M GGA G I GD + +VN +N E + D +++L+
Sbjct: 33 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|B Chain B, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|C Chain C, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
Length = 108
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 158 GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQ 204
G I + +M GGA G I GD + +VN +N E + D +++L+
Sbjct: 33 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer
pdb|3FY5|B Chain B, Dishevelled Pdz Domain Homodimer
Length = 91
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 158 GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQ 204
G I + + GGA G I GD + +VN IN E + D +++L+
Sbjct: 27 GGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLR 73
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
Length = 70
Score = 32.0 bits (71), Expect = 0.41, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 242 PYIPCKDAGLSFNKGDILHVVSQDDAYW 269
P+ KD L+FNK D++ V+ Q D +W
Sbjct: 20 PWRAKKDNHLNFNKNDVITVLEQQDMWW 47
>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory
Peptide
Length = 108
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 158 GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQ 204
G I + +M GGA G I GD + +VN +N E + D +++L+
Sbjct: 33 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 32.0 bits (71), Expect = 0.41, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 222 GYRESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
G S++ VRA F++ +++ LSF+KGD++HV ++ W
Sbjct: 1 GSANSQLVVRAKFNFQQTNEDE-------LSFSKGDVIHVTRVEEGGW 41
>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGO|B Chain B, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGN|A Chain A, Crystal Structure Of Tamalin Pdz Domain In Complex With
Mglur5 C-Terminal Peptide
Length = 96
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 136 KIVQLVKS-NEPLGATIKT------DEESGKIV--VARVMHGGAADRSGLIHVGDEVCEV 186
K++ L K N+ G I+T +E+ ++V VARV A +GL GD + V
Sbjct: 6 KVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLT-PGDTIASV 64
Query: 187 NGINVEGKTPGDVLKILQSS 206
NG+NVEG +++ I+++S
Sbjct: 65 NGLNVEGIRHREIVDIIKAS 84
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 140 LVKSNEPLGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGD 198
L + G I E G+ I + ++ GAAD G + GDE+ V+G V GK+
Sbjct: 8 LWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQL 67
Query: 199 VLKILQSS 206
V++++Q +
Sbjct: 68 VVQLMQQA 75
>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|B Chain B, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|C Chain C, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|D Chain D, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
Length = 98
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 158 GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQ 204
G I + + GGA G I GD + +VN IN E + D +++L+
Sbjct: 29 GGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLR 75
>pdb|1Y74|B Chain B, Solution Structure Of Mlin-2MLIN-7 L27 Domain Complex
pdb|1Y74|D Chain D, Solution Structure Of Mlin-2MLIN-7 L27 Domain Complex
Length = 50
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 68 AMQISLEVLDVLLSRLALNDDCKELFVLLQRPNLQGLLCAHDAVAQKDY 116
A+Q + EVL+ + S N+D KEL +L +P+ LL HD VA + Y
Sbjct: 1 AVQRAKEVLEEI-SCYPENNDAKELKRILTQPHFMALLQTHDVVAHEVY 48
>pdb|1P1E|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 101
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 148 GATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSE 207
G+ T+ S +++ + A+R G++ +GD V +NGI E T + ++L+ S
Sbjct: 26 GSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS- 84
Query: 208 GTITFKL 214
+IT K+
Sbjct: 85 -SITSKV 90
>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain
pdb|1L6O|B Chain B, Xenopus Dishevelled Pdz Domain
pdb|1L6O|C Chain C, Xenopus Dishevelled Pdz Domain
Length = 95
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 158 GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQ 204
G I + + GGA G I GD + +VN IN E + D +++L+
Sbjct: 29 GGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLR 75
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 135 VKIVQLVKSNEP-LGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEVNGINVE 192
V+ V++VK LG +IK E+ I+++++ G AAD+S + +GD + VNG ++
Sbjct: 4 VRRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLR 63
Query: 193 GKT 195
T
Sbjct: 64 QAT 66
>pdb|1V5Q|A Chain A, Solution Structure Of The Pdz Domain From Mouse Glutamate
Receptor Interacting Protein 1a-L (Grip1) Homolog
Length = 122
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 148 GATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSE 207
G+ T+ S +++ + A+R G++ +GD V +NGI E T + ++L+ S
Sbjct: 35 GSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS- 93
Query: 208 GTITFKL 214
+IT K+
Sbjct: 94 -SITSKV 99
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 133 ETVKIVQLVKSNEPLGATIKTDEES------GKIVVARVMHGGAADRSGLIHVGDEVCEV 186
E + ++L+K + LG +I + I V +++ GGAA + G + +GD++ V
Sbjct: 2 EKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 187 NGINVEGKTPGDVLKILQSSEGTITFKL 214
N + +E T + + L+++ + K+
Sbjct: 62 NSVCLEEVTHEEAVTALKNTSDFVYLKV 89
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
V+A FD+D P +D L F +GD +HV+ D W
Sbjct: 161 VQALFDFD-------PQEDGELGFRRGDFIHVMDNSDPNW 193
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 133 ETVKIVQLVKSNEPLGATIKTDEES------GKIVVARVMHGGAADRSGLIHVGDEVCEV 186
E + ++L+K + LG +I + I V +++ GGAA + G + +GD++ V
Sbjct: 7 EKIMEIKLIKGPKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 66
Query: 187 NGINVEGKTPGDVLKILQSSEGTITFKL 214
N + +E T + + L+++ + K+
Sbjct: 67 NNVALEEVTHEEAVTALKNTSDFVYLKV 94
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 134 TVKIVQLVKSNEPLGATIKTD------EESGKIVVARVMHGGAADRSGLIHVGDEVCEVN 187
T+ V L+K + LG +I I + +++ GGAA + G + +GD + VN
Sbjct: 3 TIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVN 62
Query: 188 GINVE 192
N++
Sbjct: 63 NTNLQ 67
>pdb|1X5R|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Glutamate
Receptor Interacting Protein 2
Length = 112
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 148 GATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
G T+ S +V + A+R GL+ VGD V +NGI E T
Sbjct: 35 GGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGT 82
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1
Length = 97
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 152 KTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTIT 211
K D+E I ++RV G A R+G + VGD++ EVNG+ ++G + ++ L+ + +
Sbjct: 30 KGDDEG--IFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQ 86
Query: 212 FKL 214
++
Sbjct: 87 MRV 89
>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE
Regulatory Factor 1(150-358)
Length = 216
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 136 KIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
++ + K G + +D+ + V A+ SGL D + EVNG+ +EGK
Sbjct: 11 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGL-RAQDRIVEVNGVCMEGKQ 69
Query: 196 PGDVLKILQS 205
GDV+ +++
Sbjct: 70 HGDVVSAIRA 79
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 156 ESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLI 215
++GKI ++ +A R+GL+ +CE+NG NV G + IL +S +T +
Sbjct: 107 KNGKI--TSIVKDSSAARNGLL-TEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIX 163
Query: 216 PA 217
PA
Sbjct: 164 PA 165
>pdb|2EGK|A Chain A, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|B Chain B, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|C Chain C, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|D Chain D, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
Length = 101
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 162 VARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSS 206
VARV A +GL GD + VNG+NVEG +++ I+++S
Sbjct: 41 VARVHESSPAQLAGLT-PGDTIASVNGLNVEGIRHREIVDIIKAS 84
>pdb|2PNT|A Chain A, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
pdb|2PNT|B Chain B, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
Length = 98
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 136 KIVQLVKS-NEPLGATIKT------DEESGKIV--VARVMHGGAADRSGLIHVGDEVCEV 186
K++ L K N+ G I+T +E+ ++V V RV A +GL GD + V
Sbjct: 6 KVLTLEKEDNQTFGFEIQTYGLHHREEQRVEMVTFVCRVHESSPAQLAGLT-PGDTIASV 64
Query: 187 NGINVEGKTPGDVLKILQSS 206
NG+NVEG +++ I+++S
Sbjct: 65 NGLNVEGIRHREIVDIIKAS 84
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 133 ETVKIVQLVKSNEPLGATIKTDEES------GKIVVARVMHGGAADRSGLIHVGDEVCEV 186
E + ++L+K + LG +I + I V +++ GGAA + G + +GD++ V
Sbjct: 10 EKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 69
Query: 187 NGINVEGKTPGDVLKILQSSEGTITFKL 214
N + +E T + + L+++ + K+
Sbjct: 70 NNVCLEEVTHEEAVTALKNTSDFVYLKV 97
>pdb|2EEI|A Chain A, Solution Structure Of Second Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 106
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 136 KIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
++ LVK G ++KT + + + + G A R+G++ D + EVNG NVE +
Sbjct: 10 RLCYLVKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVL-ADDHLIEVNGENVEDAS 68
Query: 196 PGDVLKILQSSEGTITFKLI 215
+V++ ++ S + F L+
Sbjct: 69 HEEVVEKVKKSGSRVMFLLV 88
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 15/75 (20%)
Query: 128 VDDEEETVKIVQLVKSNEPLGATI---------KTDEESGKIVVARVMHGGAADRSGLIH 178
+++EE T+ I++ LG +I K D+E I ++RV G A R+G +
Sbjct: 12 IEEEELTLTILRQTGG---LGISIAGGKGSTPYKGDDEG--IFISRVSEEGPAARAG-VR 65
Query: 179 VGDEVCEVNGINVEG 193
VGD++ EVNG+ ++G
Sbjct: 66 VGDKLLEVNGVALQG 80
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
Length = 61
Score = 30.8 bits (68), Expect = 0.78, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
S++ VRA F++ +++ LSF+KGD++HV ++ W
Sbjct: 5 SQLVVRAKFNFQQTNEDE-------LSFSKGDVIHVTRVEEGGW 41
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 147 LGATIKTDEESG-KIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQS 205
LG +IK E+ I+++++ G AAD++ + VGD + VNG ++ T + ++ L+
Sbjct: 91 LGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK 150
Query: 206 S 206
+
Sbjct: 151 T 151
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%)
Query: 160 IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
I V +++ GGAA + G + +GD++ VN + +E T + + L+++ + K+
Sbjct: 34 IYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKV 88
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 146 PLGATIKTDEESGKI--VVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKIL 203
P G E GK+ + V G A+++GL+ GD + EVNG NVE +T V+ +
Sbjct: 12 PNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLL-AGDRLVEVNGENVEKETHQQVVSRI 70
Query: 204 QSSEGTITFKLIPADN 219
+++ + ++ +N
Sbjct: 71 RAALNAVRLLVVDPEN 86
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus Pdz
Domain-Containing Protein 1
Length = 114
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 148 GATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSE 207
G ++ ++++ ++ + G A+++GL+ GD V +NG+ V+ + V+++++ S
Sbjct: 28 GFFLRIEKDTDGHLIRVIEEGSPAEKAGLLD-GDRVLRINGVFVDKEEHAQVVELVRKSG 86
Query: 208 GTITFKLIPADN 219
++T ++ D+
Sbjct: 87 NSVTLLVLDGDS 98
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 133 ETVKIVQLVKSNEPLGATIKTDEES------GKIVVARVMHGGAADRSGLIHVGDEVCEV 186
E + ++L+K + LG +I + I V +++ GGAA + G + +GD++ V
Sbjct: 8 EKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 67
Query: 187 NGINVEGKTPGDVLKILQSSEGTITFKL 214
N + +E T + + L+++ + K+
Sbjct: 68 NNVCLEEVTHEEAVTALKNTSDFVYLKV 95
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 133 ETVKIVQLVKSNEPLGATIKTDEES------GKIVVARVMHGGAADRSGLIHVGDEVCEV 186
E + ++L+K + LG +I + I V ++ GGAA + G + +GD++ V
Sbjct: 2 EKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAV 61
Query: 187 NGINVEGKTPGDVLKILQSSEGTITFKL 214
N + +E T + + L+++ + K+
Sbjct: 62 NSVGLEEVTHEEAVTALKNTSDFVYLKV 89
>pdb|2JRE|A Chain A, C60-1, A Pdz Domain Designed Using Statistical Coupling
Analysis
Length = 108
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 142 KSNEPLGATIK------TDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
K LG +I T E+ I V ++ G AA G I D++ V+ +NV+G
Sbjct: 22 KDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMA 81
Query: 196 PGDVLKILQSS 206
DV+++L+++
Sbjct: 82 QSDVVEVLRNA 92
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
Length = 106
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 129 DDEEETVKIVQLVKSNEPLGATIKTDEESGK----IVVARVMHGGAADRSGLIHVGDEVC 184
D +E + V L K N +G +I + +G+ I V V+ GGAAD G + GD++
Sbjct: 6 DHKEPEIITVTLKKQN-GMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLL 64
Query: 185 EVNGINVEGKTPGDVLKILQSSEGTITFKL 214
V+G ++ G + +++ + +T ++
Sbjct: 65 SVDGRSLVGLSQERAAELMTRTSSVVTLEV 94
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 147 LGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQS 205
LG +IK E+ I+++++ G AAD++ + VGD + VNG ++ T + ++ L+
Sbjct: 18 LGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK 77
Query: 206 S 206
+
Sbjct: 78 T 78
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 10/112 (8%)
Query: 106 CAHDAVAQKDYYPRLPEIPQELVDDEEETVKIVQLVKSNEPLGATIKTDEESGK--IVVA 163
+ DA + R ++P EL I++L K LG ++ +++ + I V
Sbjct: 5 SSGDAFTDQKIRQRYADLPGEL--------HIIELEKDKNGLGLSLAGNKDRSRMSIFVV 56
Query: 164 RVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLI 215
+ G A G + +GDE+ E+N + G++ + I++++ + I
Sbjct: 57 GINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFI 108
>pdb|1UFX|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Kiaa1526 Protein
Length = 103
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 137 IVQLVKSNEPLGATIKTDEESGKIV--VARVMHGGAADRSGLIHVGDEVCEVNGINVEGK 194
+V++ KS LG I+ + + + + + GG+A G + VG + EVNG+ + GK
Sbjct: 9 LVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGK 68
Query: 195 TPGDVLKIL 203
+ +I+
Sbjct: 69 EHREAARII 77
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 138 VQLVKSNEPLGATIKTDEES------GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINV 191
++L+K + LG +I + I V +++ GGAA + G + +GD++ VN + +
Sbjct: 2 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCL 61
Query: 192 EGKTPGDVLKILQSSEGTITFK 213
E T + + L+++ + K
Sbjct: 62 EEVTHEEAVTALKNTSDFVYLK 83
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 138 VQLVKSNEPLGATIKTDEE-SGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTP 196
V + K + G +I+ E + V R+ G A R+G + VGD++ E+NG + T
Sbjct: 15 VDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTH 74
Query: 197 GDVLKILQSS 206
+++++S
Sbjct: 75 ARAIELIKSG 84
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 30.0 bits (66), Expect = 1.3, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 136 KIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
+ V + K + G T+ D + V V GAA R+G + GD + +VNG V
Sbjct: 9 RCVIIQKDDNGFGLTVSGDN---PVFVQSVKEDGAAMRAG-VQTGDRIIKVNGTLVTHSN 64
Query: 196 PGDVLKILQS 205
+V+K+++S
Sbjct: 65 HLEVVKLIKS 74
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 138 VQLVKSNEPLGATIKTDEES------GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINV 191
++L+K + LG +I + I V +++ GGAA + G + +GD++ VN + +
Sbjct: 3 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCL 62
Query: 192 EGKTPGDVLKILQSSEGTITFKL 214
E T + + L+++ + K+
Sbjct: 63 EEVTHEEAVTALKNTSDFVYLKV 85
>pdb|2KJD|A Chain A, Solution Structure Of Extended Pdz2 Domain From Nherf1
(150- 270)
Length = 128
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 136 KIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
++ + K G + +D+ + V A+ SGL D + EVNG+ +EGK
Sbjct: 11 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGL-RAQDRIVEVNGVCMEGKQ 69
Query: 196 PGDVLKILQSS 206
GDV+ +++
Sbjct: 70 HGDVVSAIRAG 80
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 152 KTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINV 191
KTD+ I V RV GG A+ +GL +GD++ +VNG ++
Sbjct: 50 KTDK---GIYVTRVSEGGPAEIAGL-QIGDKIMQVNGWDM 85
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 152 KTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINV 191
KTD+ I V RV GG A+ +GL +GD++ +VNG ++
Sbjct: 50 KTDK---GIYVTRVSEGGPAEIAGL-QIGDKIMQVNGWDM 85
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
Length = 106
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 148 GATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSE 207
G ++ ++++ ++ + G A+++GL+ GD V +NG+ V+ + V+++++ S
Sbjct: 16 GFFLRIEKDTDGHLIRVIEEGSPAEKAGLLD-GDRVLRINGVFVDKEEHAQVVELVRKSG 74
Query: 208 GTITFKLIPADN 219
++T ++ D+
Sbjct: 75 NSVTLLVLDGDS 86
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
Length = 109
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 148 GATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSE 207
G ++ ++++ ++ + G A+++GL+ GD V +NG+ V+ + V+++++ S
Sbjct: 17 GFFLRIEKDTDGHLIRVIEEGSPAEKAGLLD-GDRVLRINGVFVDKEEHAQVVELVRKSG 75
Query: 208 GTITFKLIPADN 219
++T ++ D+
Sbjct: 76 NSVTLLVLDGDS 87
>pdb|2JXO|A Chain A, Structure Of The Second Pdz Domain Of Nherf-1
Length = 98
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 136 KIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
++ + K G + +D+ + V A+ SGL D + EVNG+ +EGK
Sbjct: 11 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGL-RAQDRIVEVNGVCMEGKQ 69
Query: 196 PGDVLKILQSS 206
GDV+ +++
Sbjct: 70 HGDVVSAIRAG 80
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 152 KTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINV 191
KTD+ I V RV GG A+ +GL +GD++ +VNG ++
Sbjct: 61 KTDK---GIYVTRVSEGGPAEIAGL-QIGDKIMQVNGWDM 96
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 152 KTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINV 191
KTD+ I V RV GG A+ +GL +GD++ +VNG ++
Sbjct: 50 KTDK---GIYVTRVSEGGPAEIAGL-QIGDKIMQVNGWDM 85
>pdb|3PS4|A Chain A, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|B Chain B, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|C Chain C, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|D Chain D, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
Length = 102
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 138 VQLVKSNEPLGATIK--------TDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGI 189
+ + +S + G T++ TD S +V V GG A +GL GD + VNG
Sbjct: 9 ITIQRSGKKYGFTLRAIRVYMGDTDVYSVHHIVWHVEEGGPAQEAGLC-AGDLITHVNGE 67
Query: 190 NVEGKTPGDVLKILQSSEGTITFKLIPADN 219
V G +V++++ S + P +N
Sbjct: 68 PVHGMVHPEVVELILKSGNKVAVTTTPFEN 97
>pdb|1FC6|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 147 LGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQS 205
+G I D SGK +VV GG A+++G GD + V+G V+G + DV +LQ
Sbjct: 87 VGLEITYDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGXSLYDVSDLLQG 145
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 152 KTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINV 191
KTD+ I V RV GG A+ +GL +GD++ +VNG ++
Sbjct: 51 KTDK---GIYVTRVSEGGPAEIAGL-QIGDKIMQVNGWDM 86
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 29.6 bits (65), Expect = 2.0, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
V+A FD++ P + L+F +GD++ ++++DD W
Sbjct: 5 VQALFDFN-------PQESGELAFKRGDVITLINKDDPNW 37
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 29.6 bits (65), Expect = 2.0, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+++ VRA F++ +++ LSF+KGD++HV ++ W
Sbjct: 7 NQLVVRAKFNFQQTNEDE-------LSFSKGDVIHVTRVEEGGW 43
>pdb|1OBY|A Chain A, Crystal Structure Of The Complex Of Pdz2 Of Syntenin With
A Syndecan-4 Peptide.
pdb|1OBY|B Chain B, Crystal Structure Of The Complex Of Pdz2 Of Syntenin With
A Syndecan-4 Peptide.
pdb|1OBX|A Chain A, Crystal Structure Of The Complex Of Pdz2 Of Syntenin With
An Interleukin 5 Receptor Alpha Peptide
Length = 79
Score = 29.6 bits (65), Expect = 2.1, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 156 ESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLI 215
++GKI ++ +A R+GL+ +CE+NG NV G + IL +S +T ++
Sbjct: 23 KNGKIT--SIVKDSSAARNGLL-TEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM 79
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 29.3 bits (64), Expect = 2.2, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
V+A FD++ P + L+F +GD++ ++++DD W
Sbjct: 5 VQALFDFN-------PQESGELAFKRGDVITLINKDDPNW 37
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 152 KTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINV 191
KTD+ I V RV GG A+ +GL +GD++ +VNG ++
Sbjct: 42 KTDK---GIYVTRVSEGGPAEIAGL-QIGDKIMQVNGWDM 77
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 29.3 bits (64), Expect = 2.5, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
V+A FD++ P + L+F +GD++ ++++DD W
Sbjct: 7 VQALFDFN-------PQESGELAFKRGDVITLINKDDPNW 39
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 127 LVDDEEETVKIVQLVKSNEPLGATIKTDEESG-KIVVARVMHGGAADRSGLIHVGDEVCE 185
L +E+ V +V + LG TI+ E G I + V G A+ SGL VGD++ E
Sbjct: 16 LQGGDEKKVNLV--LGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGL-KVGDQILE 72
Query: 186 VNGINVEGKTPGDVLKILQSSE 207
VNG + + +++L+SS
Sbjct: 73 VNGRSFLNILHDEAVRLLKSSR 94
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 152 KTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINV 191
KTD+ I V RV GG A+ +GL +GD++ +VNG ++
Sbjct: 40 KTDK---GIYVTRVSEGGPAEIAGL-QIGDKIMQVNGWDM 75
>pdb|1FC7|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FC9|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FCF|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 147 LGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQS 205
+G I D SGK +VV GG A+++G GD + V+G V+G + DV +LQ
Sbjct: 87 VGLEITYDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGLSLYDVSDLLQG 145
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4 And
Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
Length = 59
Score = 29.3 bits (64), Expect = 2.7, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
VRA F++ +++ LSF+KGD++HV ++ W
Sbjct: 7 VRAKFNFQQTNEDE-------LSFSKGDVIHVTRVEEGGW 39
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 146 PLGATIKTDEESGKI--VVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKIL 203
P G E GK+ + V G A+++GL+ GD + EVNG NVE +T V+ +
Sbjct: 13 PNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLL-AGDRLVEVNGENVEKETHQQVVSRI 71
Query: 204 QSS 206
+++
Sbjct: 72 RAA 74
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 141 VKSNEPLGATI--KTDEESG-KIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPG 197
+ S + LG T+ +TD+E I ++ + A + G I GD + ++NGI V+ +
Sbjct: 28 MNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNRE-- 85
Query: 198 DVLKILQSSEGTITFKLIPA 217
+ + +L S E F L+ A
Sbjct: 86 EAVALLTSEENK-NFSLLIA 104
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of Numb-Binding
Protein 2
Length = 95
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 143 SNEPLGATI--KTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVL 200
S E LG + +TDE + + ++ GG A + G + D V +NG +++ TP
Sbjct: 14 SGEQLGIKLVRRTDEPG--VFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAA 71
Query: 201 KILQSS 206
+I+Q+S
Sbjct: 72 QIIQAS 77
>pdb|2OZF|A Chain A, The Crystal Structure Of The 2nd Pdz Domain Of The Human
Nherf-1 (Slc9a3r1)
Length = 92
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 136 KIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
++ + K G + +D+ + V A+ SGL D + EVNG+ +EGK
Sbjct: 6 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGL-RAQDRIVEVNGVCMEGKQ 64
Query: 196 PGDVLKILQS 205
GDV+ +++
Sbjct: 65 HGDVVSAIRA 74
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 146 PLGATIKTDEESGKI--VVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKIL 203
P G E GK+ + V G A+++GL+ GD + EVNG NVE +T V+ +
Sbjct: 13 PNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLL-AGDRLVEVNGENVEKETHQQVVSRI 71
Query: 204 QSS 206
+++
Sbjct: 72 RAA 74
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 28.9 bits (63), Expect = 3.2, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
RVRA +D++A +D L+F G+++ V+ DA W
Sbjct: 7 RVRALYDFEA-------VEDNELTFKHGELITVLDDSDANW 40
>pdb|1WIF|A Chain A, The Solution Structure Of Rsgi Ruh-020, A Pdz Domain Of
Hypothetical Protein From Mouse
Length = 126
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 136 KIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
K++Q + LG + + + ++ +++ GAA G++ GD + V NV G T
Sbjct: 27 KVIQTKLTVGNLGLGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYT 86
Query: 196 PGDVLKILQS 205
+ LK+LQ+
Sbjct: 87 LREFLKLLQN 96
>pdb|1N8F|A Chain A, Crystal Structure Of E24q Mutant Of
Phenylalanine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
(Dahp Synthase) From Escherichia Coli In Complex With
Mn2+ And Pep
pdb|1N8F|B Chain B, Crystal Structure Of E24q Mutant Of
Phenylalanine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
(Dahp Synthase) From Escherichia Coli In Complex With
Mn2+ And Pep
pdb|1N8F|C Chain C, Crystal Structure Of E24q Mutant Of
Phenylalanine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
(Dahp Synthase) From Escherichia Coli In Complex With
Mn2+ And Pep
pdb|1N8F|D Chain D, Crystal Structure Of E24q Mutant Of
Phenylalanine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
(Dahp Synthase) From Escherichia Coli In Complex With
Mn2+ And Pep
Length = 350
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 60 QSHPVLSNAMQISLEVLDVLLSRLALNDDCKELFVLLQRPNLQGLLCAHDAVAQKDYYPR 119
Q P NA + L NDD L V++ G HD VA K+Y R
Sbjct: 24 QKFPATENAANTVAHARKAIHKILKGNDD--RLLVVI------GPCSIHDPVAAKEYATR 75
Query: 120 LPEIPQELVDDEEETVKI 137
L + +EL D+ E +++
Sbjct: 76 LLALREELKDELEIVMRV 93
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 146 PLGATIKTDEESGKI--VVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKIL 203
P G E GK+ + V G A+++GL+ GD + EVNG NVE +T V+ +
Sbjct: 13 PNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLL-AGDRLVEVNGENVEKETHQQVVSRI 71
Query: 204 QSS 206
+++
Sbjct: 72 RAA 74
>pdb|2EDP|A Chain A, Solution Structure Of The Pdz Domain From Human Shroom
Family Member 4
Length = 100
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 138 VQLVKSNEPLGATIKTD-EESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
VQL + P G T+K E + V+++ GG A S + GDE+ +NG + G
Sbjct: 15 VQL-QGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG 70
>pdb|3CYY|A Chain A, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
pdb|3CYY|B Chain B, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
Length = 92
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 138 VQLVKS--NEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
V LVKS NE G + + I V + A R G I GD V ++NG E +
Sbjct: 6 VTLVKSAKNEEYGLRL-----ASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMS 60
Query: 196 PGDVLKILQSSEGTITF 212
D +++ S+G +
Sbjct: 61 LTDAKTLIERSKGKLKM 77
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 141 VKSNEPLGATIKTDEESGK----IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTP 196
+K +G +I + +G+ I V V+ GGAAD G + GD++ V+G ++ G +
Sbjct: 11 LKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQ 70
Query: 197 GDVLKILQSSEGTITFKL 214
+++ + +T ++
Sbjct: 71 ERAAELMTRTSSVVTLEV 88
>pdb|2JWE|A Chain A, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
pdb|2JWE|B Chain B, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
Length = 88
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 138 VQLVKS--NEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
V LVKS NE G + + I V + A R G I GD V ++NG E +
Sbjct: 3 VTLVKSRKNEEYGLRL-----ASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMS 57
Query: 196 PGDVLKILQSSEGTITF 212
D +++ S+G +
Sbjct: 58 LTDAKTLIERSKGKLKM 74
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 137 IVQLVKSNEPLGATIKTDEESGK----IVVARVMHGGAADRSGLIHVGDEVCEVNGINVE 192
I +K +G +I + +G+ I V V+ GGAAD G + GD++ V+G ++
Sbjct: 7 ITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLV 66
Query: 193 GKTPGDVLKILQSSEGTITFKL 214
G + +++ + +T ++
Sbjct: 67 GLSQERAAELMTRTSSVVTLEV 88
>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6
Length = 72
Score = 28.1 bits (61), Expect = 4.9, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 248 DAGLSFNKGDILHVVSQDDAYW 269
D LSF GD+ HV +++ +W
Sbjct: 24 DEELSFRAGDVFHVARKEEQWW 45
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery Of
Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 137 IVQLVKSNEPLGATIKTDEESGK----IVVARVMHGGAADRSGLIHVGDEVCEVNGINVE 192
I +K +G +I + +G+ I V V+ GGAAD G + GD++ V+G ++
Sbjct: 13 ITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLV 72
Query: 193 G 193
G
Sbjct: 73 G 73
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 101
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 127 LVDDEEETVKIVQLVKSNEPLGATI--KTDEE-----SGKIVVARVMHGGAADRSGLIHV 179
LV +EE + L + LG I TD++ SG I V+R+ GAA G +
Sbjct: 5 LVTEEE-----INLTRGPSGLGFNIVGGTDQQYVSNDSG-IYVSRIKENGAAALDGRLQE 58
Query: 180 GDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
GD++ VNG +++ D + + +++ ++ ++
Sbjct: 59 GDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 93
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad-
Like Protein
Length = 117
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/62 (19%), Positives = 35/62 (56%)
Query: 151 IKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTI 210
+K EE I + +V+ A ++ + GD++ EV+G++++ + + ++ ++++ +
Sbjct: 43 LKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPV 102
Query: 211 TF 212
F
Sbjct: 103 VF 104
>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|B Chain B, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|C Chain C, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|D Chain D, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|E Chain E, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|F Chain F, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
Length = 167
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 243 YIPCKDAGLSFNKGDILHVVSQDDAYW 269
Y P D L F KG+ L ++ Q +W
Sbjct: 13 YEPSHDGDLGFEKGEQLRILEQSGEWW 39
>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWO|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 120
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 32/60 (53%)
Query: 160 IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPADN 219
I +A + G A ++ + VGD + + G + EG T + +L+++ G+I +++ +
Sbjct: 55 IFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGD 114
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 102
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 127 LVDDEEETVKIVQLVKSNEPLGATI--KTDEE-----SGKIVVARVMHGGAADRSGLIHV 179
LV +EE + L + LG I TD++ SG I V+R+ GAA G +
Sbjct: 7 LVTEEE-----INLTRGPSGLGFNIVGGTDQQYVSNDSG-IYVSRIKENGAAALDGRLQE 60
Query: 180 GDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
GD++ VNG +++ D + + +++ ++ ++
Sbjct: 61 GDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 95
>pdb|3QJM|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJM|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|C Chain C, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|D Chain D, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|E Chain E, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|F Chain F, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|G Chain G, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|H Chain H, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
Length = 115
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 168 GGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLI 215
GG A R+GL +GD + EVNG NV V+ +++ T+ K++
Sbjct: 55 GGVAWRAGL-RMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV 101
>pdb|1Q3O|A Chain A, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3O|B Chain B, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3P|A Chain A, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
pdb|1Q3P|B Chain B, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
Length = 109
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 168 GGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLI 215
GG A R+GL +GD + EVNG NV V+ +++ T+ K++
Sbjct: 55 GGVAWRAGL-RMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV 101
>pdb|3SZT|A Chain A, Quorum Sensing Control Repressor, Qscr, Bound To
N-3-Oxo-Dodecanoyl-L- Homoserine Lactone
pdb|3SZT|B Chain B, Quorum Sensing Control Repressor, Qscr, Bound To
N-3-Oxo-Dodecanoyl-L- Homoserine Lactone
Length = 237
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 135 VKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADR-------SGLIHVGDEVCEVN 187
+ ++ LV+S+E + AT ++ES + + ++ D + + E+
Sbjct: 125 ISMLSLVRSSESIAATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEML 184
Query: 188 GINVEGKTPGDVLKILQSSEGTITFKLIPADNKL 221
GKT G++ IL + T+ F ++ A KL
Sbjct: 185 KWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKL 218
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
VRA FD++ + D +P F KGDIL + + + W
Sbjct: 4 VRALFDFNGNDDEDLP-------FKKGDILKIRDKPEEQW 36
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+V A +DY A+++ LSF+KG +++V+++DD W
Sbjct: 20 QVIAMYDYAANNED-------ELSFSKGQLINVMNKDDPDW 53
>pdb|2RCZ|A Chain A, Structure Of The Second Pdz Domain Of Zo-1
pdb|2RCZ|B Chain B, Structure Of The Second Pdz Domain Of Zo-1
Length = 81
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 138 VQLVKS--NEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
V LVKS NE G + + I V + A R G I GD V ++NG E +
Sbjct: 4 VTLVKSRKNEEYGLRL-----ASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMS 58
Query: 196 PGDVLKILQSSEGTITF 212
D +++ S+G +
Sbjct: 59 LTDAKTLIERSKGKLKM 75
>pdb|2Z17|A Chain A, Crystal Sturcture Of Pdz Domain From Human Pleckstrin
Homology, Sec7
Length = 104
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 161 VVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLI 215
++ ++ A +GL GD + +NG++ EG T V+ +++SS +T + +
Sbjct: 51 LICKIQEDSPAHCAGL-QAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIETL 104
>pdb|3L4F|D Chain D, Crystal Structure Of Betapix Coiled-Coil Domain And Shank
Pdz Complex
Length = 132
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 168 GGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLI 215
GG A R+GL +GD + EVNG NV V+ +++ T+ K++
Sbjct: 75 GGVAWRAGL-RMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV 121
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 127 LVDDEEETVKIVQLVKSNEPLGATI--KTDEE-----SGKIVVARVMHGGAADRSGLIHV 179
LV +EE + L + LG I TD++ SG I V+R+ GAA G +
Sbjct: 15 LVTEEE-----INLTRGPSGLGFNIVGGTDQQYVSNDSG-IYVSRIKENGAAALDGRLQE 68
Query: 180 GDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
GD++ VNG +++ D + + +++ ++ ++
Sbjct: 69 GDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 103
>pdb|1KFL|A Chain A, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase (Dahp
Synthase) From E.Coli Complexed With Mn2+, Pep, And Phe
pdb|1KFL|B Chain B, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase (Dahp
Synthase) From E.Coli Complexed With Mn2+, Pep, And Phe
pdb|1KFL|C Chain C, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase (Dahp
Synthase) From E.Coli Complexed With Mn2+, Pep, And Phe
pdb|1KFL|D Chain D, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase (Dahp
Synthase) From E.Coli Complexed With Mn2+, Pep, And Phe
pdb|1KFL|E Chain E, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase (Dahp
Synthase) From E.Coli Complexed With Mn2+, Pep, And Phe
pdb|1KFL|F Chain F, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase (Dahp
Synthase) From E.Coli Complexed With Mn2+, Pep, And Phe
pdb|1KFL|G Chain G, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase (Dahp
Synthase) From E.Coli Complexed With Mn2+, Pep, And Phe
pdb|1KFL|H Chain H, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase (Dahp
Synthase) From E.Coli Complexed With Mn2+, Pep, And Phe
Length = 350
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 60 QSHPVLSNAMQISLEVLDVLLSRLALNDDCKELFVLLQRPNLQGLLCAHDAVAQKDYYPR 119
+ P NA + L NDD L V++ G HD VA K+Y R
Sbjct: 24 EKFPATENAANTVAHARKAIHKILKGNDD--RLLVVI------GPCSIHDPVAAKEYATR 75
Query: 120 LPEIPQELVDDEEETVKIVQLVKSNEPLG 148
L + +EL DE E V V K +G
Sbjct: 76 LLALREEL-KDELEIVXRVYFEKPRTTVG 103
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 138 VQLVKSNEPLGATIKTDEESGK---IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGK 194
V+LV+ G T+ + + V ++ G A R G + VGD V +NG + +G
Sbjct: 15 VELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGL 74
Query: 195 T 195
T
Sbjct: 75 T 75
>pdb|1QR7|A Chain A, Crystal Structure Of Phenylalanine-regulated 3-deoxy-d-
Arabino-heptulosonate-7-phosphate Synthase From
Escherichia Coli Complexed With Pb2+ And Pep
pdb|1QR7|B Chain B, Crystal Structure Of Phenylalanine-regulated 3-deoxy-d-
Arabino-heptulosonate-7-phosphate Synthase From
Escherichia Coli Complexed With Pb2+ And Pep
pdb|1QR7|C Chain C, Crystal Structure Of Phenylalanine-regulated 3-deoxy-d-
Arabino-heptulosonate-7-phosphate Synthase From
Escherichia Coli Complexed With Pb2+ And Pep
pdb|1QR7|D Chain D, Crystal Structure Of Phenylalanine-regulated 3-deoxy-d-
Arabino-heptulosonate-7-phosphate Synthase From
Escherichia Coli Complexed With Pb2+ And Pep
pdb|1GG1|A Chain A, Crystal Structure Analysis Of Dahp Synthase In Complex
With Mn2+ And 2-Phosphoglycolate
pdb|1GG1|B Chain B, Crystal Structure Analysis Of Dahp Synthase In Complex
With Mn2+ And 2-Phosphoglycolate
pdb|1GG1|C Chain C, Crystal Structure Analysis Of Dahp Synthase In Complex
With Mn2+ And 2-Phosphoglycolate
pdb|1GG1|D Chain D, Crystal Structure Analysis Of Dahp Synthase In Complex
With Mn2+ And 2-Phosphoglycolate
Length = 350
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 60 QSHPVLSNAMQISLEVLDVLLSRLALNDDCKELFVLLQRPNLQGLLCAHDAVAQKDYYPR 119
+ P NA + L NDD L V++ G HD VA K+Y R
Sbjct: 24 EKFPATENAANTVAHARKAIHKILKGNDD--RLLVVI------GPCSIHDPVAAKEYATR 75
Query: 120 LPEIPQELVDDEEETVKI 137
L + +EL D+ E +++
Sbjct: 76 LLALREELKDELEIVMRV 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,125,535
Number of Sequences: 62578
Number of extensions: 283486
Number of successful extensions: 1030
Number of sequences better than 100.0: 240
Number of HSP's better than 100.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 831
Number of HSP's gapped (non-prelim): 249
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 51 (24.3 bits)