Query psy14174
Match_columns 269
No_of_seqs 357 out of 1812
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 21:19:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0609|consensus 100.0 5.7E-48 1.2E-52 361.8 18.2 248 17-269 3-256 (542)
2 KOG3550|consensus 99.7 3.6E-17 7.9E-22 131.7 12.3 165 7-216 8-173 (207)
3 PF00595 PDZ: PDZ domain (Also 99.6 7.4E-15 1.6E-19 108.1 10.6 78 137-215 1-81 (81)
4 KOG3580|consensus 99.6 9.6E-15 2.1E-19 139.2 9.4 122 133-264 406-534 (1027)
5 KOG3549|consensus 99.3 7.7E-12 1.7E-16 113.1 8.7 84 133-216 53-138 (505)
6 KOG3209|consensus 99.3 1.2E-11 2.7E-16 120.0 9.4 85 132-216 896-981 (984)
7 KOG3209|consensus 99.3 8.3E-12 1.8E-16 121.2 7.9 84 135-218 754-838 (984)
8 KOG3606|consensus 99.3 8.3E-12 1.8E-16 109.5 6.9 87 132-218 156-254 (358)
9 KOG3551|consensus 99.3 1E-11 2.3E-16 113.5 6.9 83 133-215 83-167 (506)
10 cd00992 PDZ_signaling PDZ doma 99.2 2.5E-10 5.4E-15 83.4 11.2 78 136-214 2-81 (82)
11 smart00228 PDZ Domain present 99.2 4.8E-10 1E-14 82.1 12.0 81 136-217 3-84 (85)
12 cd00136 PDZ PDZ domain, also c 99.1 6.4E-10 1.4E-14 79.0 9.5 67 146-214 2-69 (70)
13 KOG1892|consensus 99.0 2.7E-09 5.9E-14 106.6 9.9 85 133-218 932-1020(1629)
14 PF13180 PDZ_2: PDZ domain; PD 99.0 8.2E-09 1.8E-13 76.1 10.1 70 146-218 2-73 (82)
15 KOG3605|consensus 98.9 3.7E-09 8.1E-14 102.2 6.7 87 132-218 643-735 (829)
16 PF02828 L27: L27 domain; Int 98.9 1.4E-09 3E-14 74.8 2.8 54 68-121 1-55 (56)
17 cd00988 PDZ_CTP_protease PDZ d 98.8 3.7E-08 8.1E-13 72.5 9.4 70 145-217 2-72 (85)
18 KOG3580|consensus 98.8 2.6E-08 5.6E-13 95.9 8.9 80 136-217 10-97 (1027)
19 KOG3553|consensus 98.7 1.4E-08 3E-13 76.7 4.0 68 147-216 37-115 (124)
20 KOG3571|consensus 98.6 9.9E-08 2.1E-12 90.3 8.3 83 136-218 251-340 (626)
21 KOG3552|consensus 98.5 9.5E-08 2.1E-12 95.7 5.4 76 135-216 56-131 (1298)
22 KOG3651|consensus 98.5 5.2E-07 1.1E-11 80.8 8.4 80 137-216 7-88 (429)
23 cd00990 PDZ_glycyl_aminopeptid 98.5 8.9E-07 1.9E-11 64.4 8.4 66 147-218 3-68 (80)
24 cd00989 PDZ_metalloprotease PD 98.5 1.3E-06 2.9E-11 63.1 8.8 67 147-218 3-70 (79)
25 cd00991 PDZ_archaeal_metallopr 98.5 1.3E-06 2.9E-11 63.8 8.8 59 157-218 9-69 (79)
26 COG0793 Prc Periplasmic protea 98.4 1.5E-06 3.2E-11 82.6 9.6 73 143-217 98-171 (406)
27 TIGR00225 prc C-terminal pepti 98.3 2.4E-06 5.2E-11 79.2 9.1 70 146-218 52-122 (334)
28 PLN00049 carboxyl-terminal pro 98.3 2.4E-06 5.1E-11 80.9 9.1 73 145-218 85-162 (389)
29 PF02828 L27: L27 domain; Int 98.3 8.2E-07 1.8E-11 60.9 3.8 48 12-59 1-48 (56)
30 KOG3938|consensus 98.3 1.2E-06 2.6E-11 77.1 5.2 82 133-215 125-208 (334)
31 cd00987 PDZ_serine_protease PD 98.2 7.8E-06 1.7E-10 60.4 8.6 58 158-218 24-83 (90)
32 PRK11186 carboxy-terminal prot 98.2 3E-06 6.4E-11 84.9 8.0 73 143-217 242-320 (667)
33 KOG3542|consensus 98.2 2.2E-06 4.8E-11 83.8 6.6 82 133-216 534-618 (1283)
34 smart00569 L27 domain in recep 98.2 1.4E-06 3E-11 59.1 3.6 52 69-120 2-53 (55)
35 cd00986 PDZ_LON_protease PDZ d 98.2 2E-05 4.4E-10 57.2 9.0 57 158-218 8-66 (79)
36 KOG3605|consensus 98.1 1.2E-06 2.5E-11 85.3 2.5 79 133-218 735-815 (829)
37 smart00569 L27 domain in recep 97.9 2.2E-05 4.7E-10 53.1 4.3 47 12-59 1-47 (55)
38 PRK10779 zinc metallopeptidase 97.9 4.7E-05 1E-09 73.4 7.9 57 159-218 127-185 (449)
39 TIGR02037 degP_htrA_DO peripla 97.8 0.00011 2.4E-09 70.3 10.2 58 158-218 257-316 (428)
40 TIGR01713 typeII_sec_gspC gene 97.8 0.00012 2.6E-09 65.6 9.5 69 147-218 179-250 (259)
41 PRK10942 serine endoprotease; 97.7 0.00015 3.3E-09 70.3 9.0 58 158-218 408-465 (473)
42 PRK10139 serine endoprotease; 97.7 0.00015 3.3E-09 70.0 8.3 58 158-218 390-447 (455)
43 PRK10139 serine endoprotease; 97.6 0.00025 5.3E-09 68.6 9.3 58 158-218 290-349 (455)
44 TIGR02037 degP_htrA_DO peripla 97.6 0.0002 4.3E-09 68.5 8.5 58 158-218 362-421 (428)
45 TIGR02038 protease_degS peripl 97.6 0.00025 5.4E-09 66.3 8.5 58 158-218 278-337 (351)
46 TIGR00054 RIP metalloprotease 97.6 0.00026 5.6E-09 67.8 8.5 57 158-217 128-184 (420)
47 PRK10779 zinc metallopeptidase 97.6 0.00033 7.1E-09 67.6 9.2 57 159-218 222-279 (449)
48 PRK10898 serine endoprotease; 97.6 0.00039 8.4E-09 65.1 9.1 58 158-218 279-338 (353)
49 PRK10942 serine endoprotease; 97.6 0.00038 8.3E-09 67.6 9.3 58 158-218 311-370 (473)
50 PF07653 SH3_2: Variant SH3 do 97.6 5.7E-05 1.2E-09 51.3 2.6 34 229-269 1-35 (55)
51 TIGR00054 RIP metalloprotease 97.5 0.00034 7.4E-09 66.9 8.7 58 158-218 203-261 (420)
52 PF00018 SH3_1: SH3 domain; I 97.5 8E-05 1.7E-09 49.1 2.2 32 231-269 1-32 (48)
53 KOG0708|consensus 97.4 0.00014 2.9E-09 67.3 3.7 83 185-269 2-106 (359)
54 PF09060 L27_N: L27_N; InterP 97.4 0.00017 3.7E-09 47.0 2.7 45 13-57 2-48 (49)
55 PF14685 Tricorn_PDZ: Tricorn 97.3 0.002 4.3E-08 48.3 8.5 69 146-218 2-80 (88)
56 TIGR03279 cyano_FeS_chp putati 97.2 0.001 2.3E-08 63.3 7.8 50 162-216 2-51 (433)
57 KOG0606|consensus 97.2 0.00098 2.1E-08 69.1 7.9 80 138-218 630-717 (1205)
58 KOG2199|consensus 97.2 0.00015 3.3E-09 67.4 1.8 37 226-269 214-250 (462)
59 TIGR02860 spore_IV_B stage IV 97.2 0.0022 4.7E-08 60.8 9.0 71 141-218 92-171 (402)
60 KOG1118|consensus 97.1 0.0003 6.5E-09 63.4 2.2 39 224-269 303-341 (366)
61 PF04495 GRASP55_65: GRASP55/6 97.0 0.015 3.3E-07 47.2 11.3 82 133-217 9-101 (138)
62 PF14604 SH3_9: Variant SH3 do 96.9 0.00066 1.4E-08 45.1 2.4 31 232-269 1-31 (49)
63 KOG1738|consensus 96.9 0.0014 3E-08 64.3 5.1 73 142-215 210-282 (638)
64 COG3975 Predicted protease wit 96.8 0.002 4.4E-08 62.2 5.2 73 135-218 439-513 (558)
65 KOG4792|consensus 96.7 0.00099 2.1E-08 57.8 2.2 38 225-269 122-159 (293)
66 smart00326 SH3 Src homology 3 96.6 0.003 6.5E-08 41.9 4.1 35 228-269 3-37 (58)
67 cd00174 SH3 Src homology 3 dom 96.5 0.0042 9.1E-08 40.6 3.9 34 229-269 1-34 (54)
68 PF09045 L27_2: L27_2; InterP 96.2 0.0053 1.1E-07 41.9 3.1 46 14-59 3-53 (58)
69 KOG3129|consensus 96.2 0.014 3.1E-07 50.1 6.3 59 159-218 140-200 (231)
70 COG0265 DegQ Trypsin-like seri 96.1 0.019 4E-07 53.4 7.6 58 158-218 270-329 (347)
71 KOG1029|consensus 95.6 0.009 2E-07 60.0 3.3 35 228-269 1054-1088(1118)
72 PRK09681 putative type II secr 95.5 0.1 2.2E-06 47.2 9.1 54 162-218 208-266 (276)
73 COG3031 PulC Type II secretory 95.3 0.092 2E-06 46.2 8.1 79 134-231 194-274 (275)
74 KOG4225|consensus 95.3 0.013 2.7E-07 55.5 2.9 34 229-269 232-265 (489)
75 KOG3532|consensus 95.2 0.065 1.4E-06 53.5 7.6 74 140-217 380-454 (1051)
76 KOG3601|consensus 95.1 0.0083 1.8E-07 51.6 0.9 104 159-269 80-198 (222)
77 COG3480 SdrC Predicted secrete 94.3 0.28 6.1E-06 45.0 8.8 56 158-217 130-187 (342)
78 KOG4225|consensus 94.3 0.036 7.9E-07 52.5 3.0 36 227-269 432-467 (489)
79 KOG1320|consensus 94.2 0.18 3.9E-06 48.8 7.6 56 159-217 399-456 (473)
80 KOG4407|consensus 92.2 0.15 3.2E-06 54.3 3.9 82 135-218 47-154 (1973)
81 KOG1421|consensus 91.4 0.65 1.4E-05 46.7 7.3 57 158-218 303-360 (955)
82 KOG4371|consensus 91.2 0.43 9.4E-06 49.8 5.9 80 135-217 1148-1227(1332)
83 PF12812 PDZ_1: PDZ-like domai 91.1 0.72 1.6E-05 33.6 5.6 47 159-208 31-77 (78)
84 KOG4371|consensus 90.3 0.35 7.5E-06 50.5 4.4 82 135-216 1246-1328(1332)
85 KOG4226|consensus 89.9 0.23 5E-06 44.6 2.4 33 230-269 194-228 (379)
86 KOG2856|consensus 88.7 0.18 3.8E-06 47.0 0.8 33 228-267 415-447 (472)
87 KOG3632|consensus 86.1 0.68 1.5E-05 48.2 3.4 35 230-266 1141-1178(1335)
88 KOG0162|consensus 85.4 1 2.2E-05 45.7 4.1 35 228-269 1052-1086(1106)
89 KOG4407|consensus 84.8 0.44 9.5E-06 50.9 1.3 60 158-218 143-202 (1973)
90 KOG3834|consensus 83.4 2.2 4.8E-05 40.7 5.3 60 157-217 14-73 (462)
91 KOG3875|consensus 79.6 0.45 9.7E-06 43.4 -0.7 33 228-267 269-301 (362)
92 PF11874 DUF3394: Domain of un 77.2 4.4 9.6E-05 34.4 4.6 38 146-186 112-149 (183)
93 KOG3812|consensus 75.5 2.6 5.7E-05 39.1 3.0 46 224-269 55-100 (475)
94 KOG0792|consensus 75.5 1.6 3.4E-05 46.0 1.7 65 144-208 715-799 (1144)
95 COG0750 Predicted membrane-ass 73.6 8.9 0.00019 35.6 6.2 52 162-216 133-188 (375)
96 KOG2546|consensus 73.6 2.4 5.2E-05 40.4 2.3 33 230-269 426-458 (483)
97 KOG4348|consensus 73.2 2.9 6.2E-05 40.1 2.7 37 226-269 260-298 (627)
98 KOG1421|consensus 71.6 13 0.00029 37.7 7.0 77 157-239 861-937 (955)
99 KOG1843|consensus 71.3 3.7 8.1E-05 38.9 3.0 32 229-267 418-449 (473)
100 KOG3834|consensus 70.6 27 0.00059 33.5 8.5 83 131-216 74-166 (462)
101 KOG2857|consensus 67.1 4.3 9.4E-05 32.9 2.1 42 69-112 69-110 (157)
102 KOG0515|consensus 63.0 7.3 0.00016 38.4 3.2 31 230-267 686-716 (752)
103 KOG1702|consensus 61.5 5.9 0.00013 34.3 2.1 35 228-269 208-242 (264)
104 KOG2921|consensus 54.1 25 0.00054 33.6 5.0 46 157-205 219-265 (484)
105 KOG1703|consensus 52.7 12 0.00027 36.4 3.0 71 146-217 9-79 (479)
106 KOG3632|consensus 49.7 13 0.00029 39.2 2.7 39 229-267 1246-1284(1335)
107 KOG1945|consensus 49.4 9.8 0.00021 35.5 1.6 79 138-216 103-188 (377)
108 PF09058 L27_1: L27_1; InterP 46.9 48 0.001 23.2 4.3 46 12-57 7-57 (64)
109 KOG4348|consensus 45.7 4.8 0.0001 38.6 -1.0 34 229-269 102-135 (627)
110 KOG3771|consensus 41.7 28 0.00061 33.7 3.4 35 225-266 398-432 (460)
111 KOG1029|consensus 41.3 17 0.00038 37.4 2.0 33 230-269 816-848 (1118)
112 PF02785 Biotin_carb_C: Biotin 40.9 41 0.00089 25.9 3.7 36 11-48 63-98 (107)
113 KOG2222|consensus 40.1 16 0.00034 35.7 1.5 34 227-267 548-581 (848)
114 KOG2996|consensus 40.1 30 0.00066 34.6 3.4 35 229-269 805-842 (865)
115 KOG1264|consensus 39.7 20 0.00042 37.4 2.1 37 226-269 773-809 (1267)
116 PF04656 Pox_E6: Pox virus E6 37.2 13 0.00027 36.1 0.4 15 255-269 301-315 (566)
117 PHA03000 Hypothetical protein; 35.6 14 0.00029 35.8 0.3 15 255-269 301-315 (566)
118 PRK13810 orotate phosphoribosy 31.8 94 0.002 26.3 4.8 39 175-213 117-155 (187)
119 PRK03818 putative transporter; 30.4 2.5E+02 0.0053 28.1 8.2 50 136-186 207-261 (552)
120 KOG3655|consensus 27.5 35 0.00076 33.1 1.6 35 228-269 428-462 (484)
121 PF01472 PUA: PUA domain; Int 27.1 52 0.0011 23.2 2.1 15 252-266 30-44 (74)
122 KOG3342|consensus 26.6 48 0.001 27.5 2.0 14 252-265 61-74 (180)
123 PF10906 DUF2697: Protein of u 26.0 68 0.0015 22.8 2.4 29 37-65 5-34 (68)
124 KOG4825|consensus 25.8 1.4E+02 0.0031 29.1 5.3 73 8-83 164-239 (666)
125 COG0461 PyrE Orotate phosphori 25.0 1.5E+02 0.0033 25.6 4.9 35 177-211 109-143 (201)
126 KOG4773|consensus 24.2 14 0.00029 34.6 -1.7 33 230-269 178-210 (386)
127 TIGR03802 Asp_Ala_antiprt aspa 24.0 3.8E+02 0.0083 26.7 8.2 52 135-186 219-275 (562)
128 COG3655 Predicted transcriptio 23.3 38 0.00081 24.4 0.7 18 250-267 54-71 (73)
129 COG5233 GRH1 Peripheral Golgi 21.4 50 0.0011 30.7 1.3 33 158-191 63-95 (417)
130 KOG0609|consensus 21.4 2.1E+02 0.0045 28.5 5.6 27 31-57 74-100 (542)
131 smart00878 Biotin_carb_C Bioti 21.1 1E+02 0.0023 23.6 2.9 36 11-48 63-98 (107)
132 PRK05500 bifunctional orotidin 20.6 2.6E+02 0.0056 27.5 6.1 46 168-213 381-426 (477)
No 1
>KOG0609|consensus
Probab=100.00 E-value=5.7e-48 Score=361.85 Aligned_cols=248 Identities=46% Similarity=0.724 Sum_probs=212.0
Q ss_pred HHHHHHhhcccccChhhHHHHHHHhcChhHHHHHhhhhccccccC---CCccCchHHhHHHHHHHHhhccCCChhHHHHH
Q psy14174 17 LETLQESQSTFSANDEELLFLSSLLQSKELNALVHVHNSIVNEQS---HPVLSNAMQISLEVLDVLLSRLALNDDCKELF 93 (269)
Q Consensus 17 L~~L~~~~~~~~~~~~d~~~l~~~l~~~~~~~l~~~~~~~~~~~~---~p~~~~~~~~~~~v~~~l~~~~~~~~~~~el~ 93 (269)
|+++..+...+.....+++||+++|++|.+++|+++|++|+..+. .|..+++..+..++++.+..... +.+++||.
T Consensus 3 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~l~k~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~eL~ 81 (542)
T KOG0609|consen 3 LDNLVELFSSTGYERGDLIFLRSILESPIVQSLAKIYDKLEELKLESVVPAISNAELLAEEVLEELQLAPV-SSEVQELR 81 (542)
T ss_pred cccccccccchhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhccccCCCCccchHHHHHHHHHHhhhccCC-ChhHHHHH
Confidence 445555545554555669999999999999999999999998743 44456777777777777777766 99999999
Q ss_pred HhccCchhhhhhhhcccccccccCCCCCCCCCCC--CCCCCCceEEEEEee-CCCCCCeEEeccCCCCcEEEEEecCCCh
Q psy14174 94 VLLQRPNLQGLLCAHDAVAQKDYYPRLPEIPQEL--VDDEEETVKIVQLVK-SNEPLGATIKTDEESGKIVVARVMHGGA 170 (269)
Q Consensus 94 ~ll~~p~~~~ll~a~d~v~~~~~~~~~p~~p~~~--~~~~~~~~r~V~l~k-~~~~lG~ti~~~~~~~~i~V~~V~~gg~ 170 (269)
.||+.||+++++++||.++++ |+. +|..|... .++..+.+|+|++.| .++++|+|++..+.. .++|+||++||.
T Consensus 82 ~iL~~ph~~~~l~ahd~vas~-~~~-~~~~p~l~~~~~e~~~~vriv~i~k~~~eplG~Tik~~e~~-~~~vARI~~GG~ 158 (542)
T KOG0609|consen 82 QLLNTPHLQALLQAHDTVASK-YDQ-PPFSPYLNPESPEPVEAVRIVRIVKNTGEPLGATIRVEEDT-KVVVARIMHGGM 158 (542)
T ss_pred HHhcchhHhHHHHHhHHHhhc-cCC-CCCccccCCCcccccceeEEEEEeecCCCccceEEEeccCC-ccEEeeeccCCc
Confidence 999999999999999999988 663 34444320 234567899999999 599999999997654 899999999999
Q ss_pred hhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeEEEEEEeCCCcCcccccceeeeeecccCCCCCCCCCCCCCc
Q psy14174 171 ADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPADNKLGYRESKIRVRAHFDYDASSDPYIPCKDAG 250 (269)
Q Consensus 171 A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~l~v~p~~~~~~~~~~~~~vRa~fdy~p~~D~~ipc~e~g 250 (269)
|+|+|+|++||+|++|||+++.+....+++.+++.+.|+++|++.|+.. .......+||||+|||||..|++|||+|+|
T Consensus 159 ~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itfkiiP~~~-~~~~~~~~~vra~FdYdP~~D~~IPCkEag 237 (542)
T KOG0609|consen 159 ADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITFKIIPSYR-PPPQQQVVFVRALFDYDPKEDDLIPCKEAG 237 (542)
T ss_pred chhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEEEEccccc-CCCceeeeeehhhcCcCcccCCcccchhcC
Confidence 9999999999999999999999999999999999999999999999754 333333599999999999999999999999
Q ss_pred cccCCCCEEEEEeCCCCCC
Q psy14174 251 LSFNKGDILHVVSQDDAYW 269 (269)
Q Consensus 251 L~F~~GDIL~vv~~~d~~W 269 (269)
|+|++||||||+|++|+||
T Consensus 238 l~F~~GDILqIv~qdD~nW 256 (542)
T KOG0609|consen 238 LPFQRGDILQIVSQDDPNW 256 (542)
T ss_pred CcccccceeeeccCCCcch
Confidence 9999999999999999999
No 2
>KOG3550|consensus
Probab=99.73 E-value=3.6e-17 Score=131.67 Aligned_cols=165 Identities=24% Similarity=0.392 Sum_probs=124.7
Q ss_pred CCcchhHHHHHHHHHHhhcccccChhhHHHHHHHhcChhHHHHHhhhhccccccCCCccCchHHhHHHHHHHHhhccCCC
Q psy14174 7 EEFDISVSSLLETLQESQSTFSANDEELLFLSSLLQSKELNALVHVHNSIVNEQSHPVLSNAMQISLEVLDVLLSRLALN 86 (269)
Q Consensus 7 ~~~~~~~~~vL~~L~~~~~~~~~~~~d~~~l~~~l~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~v~~~l~~~~~~~ 86 (269)
+..+-.+++.+.-|+.++..-.-....+.-|+.+|+|.-+.++-.+|+ .+.
T Consensus 8 ~~lerdv~r~ielleklq~sgevp~~kl~alq~vlqsef~~avrevye-----------------------~vy------ 58 (207)
T KOG3550|consen 8 LTLERDVQRAIELLEKLQRSGEVPPQKLQALQKVLQSEFCTAVREVYE-----------------------HVY------ 58 (207)
T ss_pred ccchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHH------
Confidence 334446777777777777665555667777777777765544433333 222
Q ss_pred hhHHHHHHhccCchhhhhhhhcccccccccCCCCCCCCCCCCCCCCCceEEEEEeeCCCCCCeEEeccC-CCCcEEEEEe
Q psy14174 87 DDCKELFVLLQRPNLQGLLCAHDAVAQKDYYPRLPEIPQELVDDEEETVKIVQLVKSNEPLGATIKTDE-ESGKIVVARV 165 (269)
Q Consensus 87 ~~~~el~~ll~~p~~~~ll~a~d~v~~~~~~~~~p~~p~~~~~~~~~~~r~V~l~k~~~~lG~ti~~~~-~~~~i~V~~V 165 (269)
|...+-.+|.+++-..|..+|+. |. ..+....+|+|+|-|..+||||.+.||+ .+.+|||+||
T Consensus 59 ----etidi~~s~eira~atakatvaa--fa----------aseghahprvvelpktdeglgfnvmggkeqnspiyisri 122 (207)
T KOG3550|consen 59 ----ETIDIDGSPEIRAAATAKATVAA--FA----------ASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRI 122 (207)
T ss_pred ----hhcccCCChHHhhhhhhHHHHHH--HH----------HhccCCCCceeecCccccccceeeccCcccCCceEEEee
Confidence 22345556777776666666653 21 1233455799999999999999999985 4579999999
Q ss_pred cCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeEEEEEEe
Q psy14174 166 MHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIP 216 (269)
Q Consensus 166 ~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~l~v~p 216 (269)
+|||.|+|-|.|+.||++++|||++|.+-.|+.++++|+.+.++|.|.|.-
T Consensus 123 ipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvklvvry 173 (207)
T KOG3550|consen 123 IPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVKLVVRY 173 (207)
T ss_pred cCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEEEEEec
Confidence 999999999999999999999999999999999999999999999998864
No 3
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.61 E-value=7.4e-15 Score=108.11 Aligned_cols=78 Identities=33% Similarity=0.624 Sum_probs=72.3
Q ss_pred EEEEee-CCCCCCeEEeccCCC--CcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeEEEE
Q psy14174 137 IVQLVK-SNEPLGATIKTDEES--GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFK 213 (269)
Q Consensus 137 ~V~l~k-~~~~lG~ti~~~~~~--~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~l~ 213 (269)
.|.+.| .+++|||++.++... .+++|+.|.++|+|+++| |++||+|++|||+++.++++.+++.+++.+++.++|+
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~ 79 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLT 79 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEE
T ss_pred CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEE
Confidence 367888 889999999998765 499999999999999999 8999999999999999999999999999999999998
Q ss_pred EE
Q psy14174 214 LI 215 (269)
Q Consensus 214 v~ 215 (269)
|.
T Consensus 80 V~ 81 (81)
T PF00595_consen 80 VQ 81 (81)
T ss_dssp EE
T ss_pred EC
Confidence 74
No 4
>KOG3580|consensus
Probab=99.56 E-value=9.6e-15 Score=139.17 Aligned_cols=122 Identities=21% Similarity=0.401 Sum_probs=98.8
Q ss_pred CceEEEEEeeCCCCCCeEEeccCCCCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCC--CeE
Q psy14174 133 ETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSE--GTI 210 (269)
Q Consensus 133 ~~~r~V~l~k~~~~lG~ti~~~~~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~--~~v 210 (269)
...|+|++.| |..+|+.+.||++ -||||+.|..|+||++.| |+.||+|+.||.+++.++..++++..|-... ..+
T Consensus 406 P~tk~VrF~K-GdSvGLRLAGGND-VGIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEev 482 (1027)
T KOG3580|consen 406 PNTKMVRFKK-GDSVGLRLAGGND-VGIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEV 482 (1027)
T ss_pred CCceeEEeec-CCeeeeEeccCCc-eeEEEeecccCCchhhcc-ccccceeEEeccccchhhhHHHHHHHHhcCCCCcEE
Confidence 4567777665 6689999999964 499999999999999999 6999999999999999999999999987754 444
Q ss_pred EEEEEeCC-----CcCcccccceeeeeecccCCCCCCCCCCCCCccccCCCCEEEEEeC
Q psy14174 211 TFKLIPAD-----NKLGYRESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQ 264 (269)
Q Consensus 211 ~l~v~p~~-----~~~~~~~~~~~vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~ 264 (269)
++.-.... -...-...+||+|.||+|.++. ..||+|.+||+++|+|+
T Consensus 483 tilaQ~k~Dvyr~iv~s~vGDSFyIRtHFE~Eke~-------P~gL~FtrGeVFrvvDT 534 (1027)
T KOG3580|consen 483 TILAQSKADVYRDIVASGVGDSFYIRTHFECEKET-------PQGLAFTRGEVFRVVDT 534 (1027)
T ss_pred eehhhhhhHHHHHHHhccCCceeEEeeeeeecCCC-------Cccccccccceeeeeec
Confidence 44332211 1112356789999999999987 66999999999999984
No 5
>KOG3549|consensus
Probab=99.30 E-value=7.7e-12 Score=113.10 Aligned_cols=84 Identities=26% Similarity=0.429 Sum_probs=77.5
Q ss_pred CceEEEEEee-CCCCCCeEEeccC-CCCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeE
Q psy14174 133 ETVKIVQLVK-SNEPLGATIKTDE-ESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTI 210 (269)
Q Consensus 133 ~~~r~V~l~k-~~~~lG~ti~~~~-~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v 210 (269)
..-|+|.|.| .-+|||++|+||. ++-+++|++|...-.|+..|.|.+||-|++|||+.|+.++|++++.+||++|+.|
T Consensus 53 s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeV 132 (505)
T KOG3549|consen 53 SKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEV 132 (505)
T ss_pred CCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEE
Confidence 4468899999 7889999999984 4559999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEe
Q psy14174 211 TFKLIP 216 (269)
Q Consensus 211 ~l~v~p 216 (269)
+++|..
T Consensus 133 tlTV~~ 138 (505)
T KOG3549|consen 133 TLTVKH 138 (505)
T ss_pred EEEeHh
Confidence 999854
No 6
>KOG3209|consensus
Probab=99.28 E-value=1.2e-11 Score=120.01 Aligned_cols=85 Identities=22% Similarity=0.400 Sum_probs=75.7
Q ss_pred CCceEEEEEeeCCCCCCeEEeccC-CCCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeE
Q psy14174 132 EETVKIVQLVKSNEPLGATIKTDE-ESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTI 210 (269)
Q Consensus 132 ~~~~r~V~l~k~~~~lG~ti~~~~-~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v 210 (269)
...+..|+|+|+..||||+|+||+ .+-++||-|+..+|||.+.|++++||+|++|||.+..+|+|..++++|++-+..+
T Consensus 896 n~~~~~VelErG~kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg~~v 975 (984)
T KOG3209|consen 896 NGDLYTVELERGAKGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGGRRV 975 (984)
T ss_pred cCCeeEEEeeccccccceEeecccccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCCeEE
Confidence 345778999999999999999995 3459999999999999999999999999999999999999999999998777666
Q ss_pred EEEEEe
Q psy14174 211 TFKLIP 216 (269)
Q Consensus 211 ~l~v~p 216 (269)
.+.+.+
T Consensus 976 ll~Lr~ 981 (984)
T KOG3209|consen 976 LLLLRR 981 (984)
T ss_pred EEEecc
Confidence 666654
No 7
>KOG3209|consensus
Probab=99.27 E-value=8.3e-12 Score=121.22 Aligned_cols=84 Identities=26% Similarity=0.490 Sum_probs=75.1
Q ss_pred eEEEEEee-CCCCCCeEEeccCCCCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeEEEE
Q psy14174 135 VKIVQLVK-SNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFK 213 (269)
Q Consensus 135 ~r~V~l~k-~~~~lG~ti~~~~~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~l~ 213 (269)
...|.|+| .++||||.|.......+--|.+|++||||+|+|+|++||+|++|||+++.+++|.+++++|+.+|-+|+|+
T Consensus 754 ~yDV~lhR~ENeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLt 833 (984)
T KOG3209|consen 754 PYDVVLHRKENEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLT 833 (984)
T ss_pred CeeeEEecccCCceeEEEEecccCCCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEEE
Confidence 45578888 89999999987654434449999999999999999999999999999999999999999999999999999
Q ss_pred EEeCC
Q psy14174 214 LIPAD 218 (269)
Q Consensus 214 v~p~~ 218 (269)
|.|.+
T Consensus 834 Iip~e 838 (984)
T KOG3209|consen 834 IIPPE 838 (984)
T ss_pred EcChh
Confidence 99864
No 8
>KOG3606|consensus
Probab=99.27 E-value=8.3e-12 Score=109.48 Aligned_cols=87 Identities=38% Similarity=0.600 Sum_probs=78.2
Q ss_pred CCceEEEEEee--CCCCCCeEEeccC----------CCCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHH
Q psy14174 132 EETVKIVQLVK--SNEPLGATIKTDE----------ESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDV 199 (269)
Q Consensus 132 ~~~~r~V~l~k--~~~~lG~ti~~~~----------~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~ 199 (269)
+|+-|.|+|+| ...+|||.|+.|. .-.||||+|+.+||.|+..|+|.+.|+++||||+.|.|++.+|+
T Consensus 156 PEtHRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQV 235 (358)
T KOG3606|consen 156 PETHRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQV 235 (358)
T ss_pred chhhhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHH
Confidence 46667789999 5569999999872 23499999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeEEEEEEeCC
Q psy14174 200 LKILQSSEGTITFKLIPAD 218 (269)
Q Consensus 200 ~~~l~~~~~~v~l~v~p~~ 218 (269)
..|+-.....+.++|.|.+
T Consensus 236 TDMMvANshNLIiTVkPAN 254 (358)
T KOG3606|consen 236 TDMMVANSHNLIITVKPAN 254 (358)
T ss_pred HHHHhhcccceEEEecccc
Confidence 9999888899999999976
No 9
>KOG3551|consensus
Probab=99.25 E-value=1e-11 Score=113.50 Aligned_cols=83 Identities=27% Similarity=0.478 Sum_probs=76.3
Q ss_pred CceEEEEEee-CCCCCCeEEeccCCC-CcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeE
Q psy14174 133 ETVKIVQLVK-SNEPLGATIKTDEES-GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTI 210 (269)
Q Consensus 133 ~~~r~V~l~k-~~~~lG~ti~~~~~~-~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v 210 (269)
+.-|.|++.| ..+|||++|+||..+ -+|.|++|.+|-+|++++.|.+||.|++|||.++...+|+|+++.|+++|..|
T Consensus 83 ~~~R~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV 162 (506)
T KOG3551|consen 83 EAERRVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEV 162 (506)
T ss_pred cccceeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCcee
Confidence 3458899999 889999999999655 49999999999999999999999999999999999999999999999999999
Q ss_pred EEEEE
Q psy14174 211 TFKLI 215 (269)
Q Consensus 211 ~l~v~ 215 (269)
.+.|.
T Consensus 163 ~levK 167 (506)
T KOG3551|consen 163 LLEVK 167 (506)
T ss_pred eeeee
Confidence 88764
No 10
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.21 E-value=2.5e-10 Score=83.42 Aligned_cols=78 Identities=37% Similarity=0.670 Sum_probs=67.9
Q ss_pred EEEEEee-CCCCCCeEEeccCC-CCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeEEEE
Q psy14174 136 KIVQLVK-SNEPLGATIKTDEE-SGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFK 213 (269)
Q Consensus 136 r~V~l~k-~~~~lG~ti~~~~~-~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~l~ 213 (269)
+.+.+.+ ...+|||++.++.. ..+++|..|.++++|+++| |++||+|++|||.++..+++.++...++...+.++++
T Consensus 2 ~~~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~ 80 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLT 80 (82)
T ss_pred EEEEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEE
Confidence 5577888 48899999987632 2589999999999999988 6999999999999999999999999999877777776
Q ss_pred E
Q psy14174 214 L 214 (269)
Q Consensus 214 v 214 (269)
+
T Consensus 81 v 81 (82)
T cd00992 81 V 81 (82)
T ss_pred E
Confidence 5
No 11
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=99.19 E-value=4.8e-10 Score=82.07 Aligned_cols=81 Identities=32% Similarity=0.596 Sum_probs=70.5
Q ss_pred EEEEEeeCCCCCCeEEeccCCC-CcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeEEEEE
Q psy14174 136 KIVQLVKSNEPLGATIKTDEES-GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214 (269)
Q Consensus 136 r~V~l~k~~~~lG~ti~~~~~~-~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~l~v 214 (269)
+.+.+.|....|||++..+... .+++|..|.++|+|+++| |++||+|++|||..+.++++.+...+++..+..+.+++
T Consensus 3 ~~~~~~~~~~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i 81 (85)
T smart00228 3 RLVELEKGGGGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTV 81 (85)
T ss_pred EEEEEEECCCcccEEEECCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEE
Confidence 4577888658999999876432 589999999999999999 79999999999999999999999999988877888888
Q ss_pred EeC
Q psy14174 215 IPA 217 (269)
Q Consensus 215 ~p~ 217 (269)
.+.
T Consensus 82 ~r~ 84 (85)
T smart00228 82 LRG 84 (85)
T ss_pred EeC
Confidence 763
No 12
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.12 E-value=6.4e-10 Score=79.00 Aligned_cols=67 Identities=34% Similarity=0.562 Sum_probs=59.8
Q ss_pred CCCeEEeccCCCCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCC-CeEEEEE
Q psy14174 146 PLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSE-GTITFKL 214 (269)
Q Consensus 146 ~lG~ti~~~~~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~-~~v~l~v 214 (269)
++||++..... .+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++... ..++|++
T Consensus 2 ~~G~~~~~~~~-~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTE-GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCC-CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 68999998743 489999999999999999 6999999999999999999999999998865 6778776
No 13
>KOG1892|consensus
Probab=98.96 E-value=2.7e-09 Score=106.63 Aligned_cols=85 Identities=22% Similarity=0.403 Sum_probs=76.0
Q ss_pred CceEEEEEeeCCCCCCeEEeccCCC----CcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCC
Q psy14174 133 ETVKIVQLVKSNEPLGATIKTDEES----GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEG 208 (269)
Q Consensus 133 ~~~r~V~l~k~~~~lG~ti~~~~~~----~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~ 208 (269)
..+..|.|.|. .|+|++|...++. -||||..|.+||+|+..|+|..||+++.|||.++.|.+.+.+..++.+.+.
T Consensus 932 pei~~vtL~Kn-nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~ 1010 (1629)
T KOG1892|consen 932 PEIITVTLKKN-NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGN 1010 (1629)
T ss_pred CceEEEEEecc-CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCC
Confidence 44777899987 8999999765433 299999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCC
Q psy14174 209 TITFKLIPAD 218 (269)
Q Consensus 209 ~v~l~v~p~~ 218 (269)
.|+|.|...+
T Consensus 1011 vV~leVaKqg 1020 (1629)
T KOG1892|consen 1011 VVHLEVAKQG 1020 (1629)
T ss_pred eEEEehhhhh
Confidence 9999997653
No 14
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.96 E-value=8.2e-09 Score=76.06 Aligned_cols=70 Identities=29% Similarity=0.553 Sum_probs=58.1
Q ss_pred CCCeEEeccCCCCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHH--cCCCeEEEEEEeCC
Q psy14174 146 PLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQ--SSEGTITFKLIPAD 218 (269)
Q Consensus 146 ~lG~ti~~~~~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~--~~~~~v~l~v~p~~ 218 (269)
.||+++.......+++|..|.++|||+++| |++||+|++|||.++ .+..++...+. ..+.++++++.+..
T Consensus 2 ~lGv~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v--~~~~~~~~~l~~~~~g~~v~l~v~R~g 73 (82)
T PF13180_consen 2 GLGVTVQNLSDTGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPV--NSSEDLVNILSKGKPGDTVTLTVLRDG 73 (82)
T ss_dssp E-SEEEEECSCSSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEES--SSHHHHHHHHHCSSTTSEEEEEEEETT
T ss_pred EECeEEEEccCCCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEc--CCHHHHHHHHHhCCCCCEEEEEEEECC
Confidence 478888877544599999999999999999 699999999999999 45678888874 36799999999965
No 15
>KOG3605|consensus
Probab=98.86 E-value=3.7e-09 Score=102.25 Aligned_cols=87 Identities=29% Similarity=0.492 Sum_probs=76.5
Q ss_pred CCceEEEEEee-CCCCCCeEEeccCCC---CcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCC
Q psy14174 132 EETVKIVQLVK-SNEPLGATIKTDEES---GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSE 207 (269)
Q Consensus 132 ~~~~r~V~l~k-~~~~lG~ti~~~~~~---~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~ 207 (269)
.+..|.|.+.| .|+.||+.|...-.. .-++|+..++||||+|+|.|..||+|+.|||.++.|+....++.+||+..
T Consensus 643 kE~qKEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~K 722 (829)
T KOG3605|consen 643 KENQKEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLK 722 (829)
T ss_pred hcccceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhccc
Confidence 47789999999 999999998764222 26779999999999999999999999999999999999999999999864
Q ss_pred --CeEEEEEEeCC
Q psy14174 208 --GTITFKLIPAD 218 (269)
Q Consensus 208 --~~v~l~v~p~~ 218 (269)
..|+|+|++|.
T Consensus 723 nQT~VkltiV~cp 735 (829)
T KOG3605|consen 723 NQTAVKLNIVSCP 735 (829)
T ss_pred ccceEEEEEecCC
Confidence 56899999975
No 16
>PF02828 L27: L27 domain; InterPro: IPR014775 The L27 domain is found in receptor targeting proteins Lin-2 and Lin-7, as well as some protein kinases and human MPP2 protein.; PDB: 1ZL8_B 1VA8_A 3LRA_A 3UIT_A 1Y74_D 1RSO_B.
Probab=98.86 E-value=1.4e-09 Score=74.78 Aligned_cols=54 Identities=48% Similarity=0.602 Sum_probs=46.4
Q ss_pred hHHhHHHHHHHHhhccCCC-hhHHHHHHhccCchhhhhhhhcccccccccCCCCC
Q psy14174 68 AMQISLEVLDVLLSRLALN-DDCKELFVLLQRPNLQGLLCAHDAVAQKDYYPRLP 121 (269)
Q Consensus 68 ~~~~~~~v~~~l~~~~~~~-~~~~el~~ll~~p~~~~ll~a~d~v~~~~~~~~~p 121 (269)
|++++.|+++.|......+ +++.||.++|++|||++|+++||.|+++.|.|..|
T Consensus 1 av~~~~e~L~~L~~~~~~~~~~~~eL~~lL~~p~~~aLl~~hD~va~~~~~~~~p 55 (56)
T PF02828_consen 1 AVQRVLELLEELQSLSSASQEDAQELQQLLQSPHFQALLEVHDKVAQKVYEPPSP 55 (56)
T ss_dssp HHHHHHHHHHHHHHHTSSTHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTT----
T ss_pred ChHHHHHHHHHHHhccCCChHHHHHHHHHHcCHHHHHHHHHHHHHHhhcCCCCCC
Confidence 5678999999999988756 89999999999999999999999999999988544
No 17
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.82 E-value=3.7e-08 Score=72.50 Aligned_cols=70 Identities=29% Similarity=0.555 Sum_probs=59.9
Q ss_pred CCCCeEEeccCCCCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHc-CCCeEEEEEEeC
Q psy14174 145 EPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQS-SEGTITFKLIPA 217 (269)
Q Consensus 145 ~~lG~ti~~~~~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~-~~~~v~l~v~p~ 217 (269)
.+||+.+... ..+++|..|.+++||+++| |++||+|++|||.++.+.++.++...++. .+..+.+++.+.
T Consensus 2 ~~lG~~~~~~--~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 2 GGIGLELKYD--DGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred eEEEEEEEEc--CCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 3688888764 4689999999999999999 69999999999999998888899988875 467788888775
No 18
>KOG3580|consensus
Probab=98.77 E-value=2.6e-08 Score=95.86 Aligned_cols=80 Identities=26% Similarity=0.419 Sum_probs=72.2
Q ss_pred EEEEEee-CCCCCCeEEeccCCCC-------cEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCC
Q psy14174 136 KIVQLVK-SNEPLGATIKTDEESG-------KIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSE 207 (269)
Q Consensus 136 r~V~l~k-~~~~lG~ti~~~~~~~-------~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~ 207 (269)
.+|+|+| ++.|||+.|.||.++. .|+|+.|.+||||+ |+|+.||.|+.|||+++.+..|.-+++.|+.++
T Consensus 10 hTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haFAvQqLrksg 87 (1027)
T KOG3580|consen 10 HTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAFAVQQLRKSG 87 (1027)
T ss_pred heeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHHHHHHHHhhc
Confidence 4689999 8889999999986432 68999999999996 889999999999999999999999999999999
Q ss_pred CeEEEEEEeC
Q psy14174 208 GTITFKLIPA 217 (269)
Q Consensus 208 ~~v~l~v~p~ 217 (269)
....++|.+.
T Consensus 88 K~A~ItvkRp 97 (1027)
T KOG3580|consen 88 KVAAITVKRP 97 (1027)
T ss_pred cceeEEeccc
Confidence 9988888764
No 19
>KOG3553|consensus
Probab=98.71 E-value=1.4e-08 Score=76.75 Aligned_cols=68 Identities=25% Similarity=0.377 Sum_probs=56.3
Q ss_pred CCeEEeccCC-----------CCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeEEEEEE
Q psy14174 147 LGATIKTDEE-----------SGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLI 215 (269)
Q Consensus 147 lG~ti~~~~~-----------~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~l~v~ 215 (269)
+||.|-||-+ +.||||.+|..||||+++| |+.+|.|++|||-++.-++|++++..+++ ...+.+.|.
T Consensus 37 ~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k-~~vl~mLVa 114 (124)
T KOG3553|consen 37 LGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITK-EEVLRMLVA 114 (124)
T ss_pred EEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhH-hHHHHHHHH
Confidence 6999988721 3499999999999999999 59999999999999999999999999976 333444444
Q ss_pred e
Q psy14174 216 P 216 (269)
Q Consensus 216 p 216 (269)
+
T Consensus 115 R 115 (124)
T KOG3553|consen 115 R 115 (124)
T ss_pred h
Confidence 4
No 20
>KOG3571|consensus
Probab=98.63 E-value=9.9e-08 Score=90.31 Aligned_cols=83 Identities=27% Similarity=0.404 Sum_probs=69.3
Q ss_pred EEEEEee-CCCCCCeEEeccC---CCCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHc---CCC
Q psy14174 136 KIVQLVK-SNEPLGATIKTDE---ESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQS---SEG 208 (269)
Q Consensus 136 r~V~l~k-~~~~lG~ti~~~~---~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~---~~~ 208 (269)
-+|.|-- .-..||++|.|.. +++||||..|++||+-+..|+|.+||.|++||.+++++++-++++..||. ..+
T Consensus 251 ITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~g 330 (626)
T KOG3571|consen 251 ITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPG 330 (626)
T ss_pred EEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCC
Confidence 3344433 3345999999942 35799999999999999999999999999999999999999999999986 467
Q ss_pred eEEEEEEeCC
Q psy14174 209 TITFKLIPAD 218 (269)
Q Consensus 209 ~v~l~v~p~~ 218 (269)
.++|+|..+-
T Consensus 331 Pi~ltvAk~~ 340 (626)
T KOG3571|consen 331 PIKLTVAKCW 340 (626)
T ss_pred CeEEEEeecc
Confidence 7999988753
No 21
>KOG3552|consensus
Probab=98.53 E-value=9.5e-08 Score=95.65 Aligned_cols=76 Identities=25% Similarity=0.437 Sum_probs=67.4
Q ss_pred eEEEEEeeCCCCCCeEEeccCCCCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeEEEEE
Q psy14174 135 VKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214 (269)
Q Consensus 135 ~r~V~l~k~~~~lG~ti~~~~~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~l~v 214 (269)
+|.|.+++ ...|||.+..| .+++|..|.+|||++ |.|++||+|+.|||.+|....++.+++++|.+..+|.|+|
T Consensus 56 pr~vq~~r-~~~lGFgfvag---rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV 129 (1298)
T KOG3552|consen 56 PRQVQLQR-NASLGFGFVAG---RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTV 129 (1298)
T ss_pred chhhhhhc-cccccceeecC---CceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEE
Confidence 78888887 33566666776 699999999999986 8899999999999999999999999999999999999998
Q ss_pred Ee
Q psy14174 215 IP 216 (269)
Q Consensus 215 ~p 216 (269)
..
T Consensus 130 ~q 131 (1298)
T KOG3552|consen 130 CQ 131 (1298)
T ss_pred ec
Confidence 75
No 22
>KOG3651|consensus
Probab=98.49 E-value=5.2e-07 Score=80.80 Aligned_cols=80 Identities=30% Similarity=0.445 Sum_probs=70.6
Q ss_pred EEEEee-CCCCCCeEEeccCCC-CcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeEEEEE
Q psy14174 137 IVQLVK-SNEPLGATIKTDEES-GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214 (269)
Q Consensus 137 ~V~l~k-~~~~lG~ti~~~~~~-~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~l~v 214 (269)
.|.|.| ...-+|++|-||... .-+||-+|..++||.+.|.++.||+|+.|||++|.|.+.-++.++++.+.+.|++.+
T Consensus 7 ~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~Ihy 86 (429)
T KOG3651|consen 7 TVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKIHY 86 (429)
T ss_pred cEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEEEe
Confidence 478999 555679999998543 367899999999999999999999999999999999999999999999999998887
Q ss_pred Ee
Q psy14174 215 IP 216 (269)
Q Consensus 215 ~p 216 (269)
-.
T Consensus 87 NK 88 (429)
T KOG3651|consen 87 NK 88 (429)
T ss_pred hh
Confidence 43
No 23
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.48 E-value=8.9e-07 Score=64.35 Aligned_cols=66 Identities=30% Similarity=0.457 Sum_probs=50.7
Q ss_pred CCeEEeccCCCCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeEEEEEEeCC
Q psy14174 147 LGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPAD 218 (269)
Q Consensus 147 lG~ti~~~~~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~l~v~p~~ 218 (269)
+|+.+... .++++|..|.++|+|+++| |++||+|++|||.++.. ..++...+ ..+..+.+++.+.+
T Consensus 3 ~G~~~~~~--~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~--~~~~l~~~-~~~~~v~l~v~r~g 68 (80)
T cd00990 3 LGLTLDKE--EGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA--LQDRLKEY-QAGDPVELTVFRDD 68 (80)
T ss_pred ccEEEEcc--CCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH--HHHHHHhc-CCCCEEEEEEEECC
Confidence 68877654 4579999999999999999 69999999999999965 33333222 35678888888754
No 24
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.46 E-value=1.3e-06 Score=63.11 Aligned_cols=67 Identities=21% Similarity=0.373 Sum_probs=52.5
Q ss_pred CCeEEeccCCCCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcC-CCeEEEEEEeCC
Q psy14174 147 LGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSS-EGTITFKLIPAD 218 (269)
Q Consensus 147 lG~ti~~~~~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~-~~~v~l~v~p~~ 218 (269)
+||..-.. ..+++|..|.++++|+++| |++||+|++|||.++. +..++...++.. +..+.+++.+.+
T Consensus 3 ~~~~~g~~--~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~--~~~~~~~~l~~~~~~~~~l~v~r~~ 70 (79)
T cd00989 3 LGFVPGGP--PIEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIK--SWEDLVDAVQENPGKPLTLTVERNG 70 (79)
T ss_pred eeEeccCC--ccCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHHCCCceEEEEEEECC
Confidence 45544332 3468999999999999999 6999999999999996 456788888664 567888887743
No 25
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.46 E-value=1.3e-06 Score=63.79 Aligned_cols=59 Identities=25% Similarity=0.513 Sum_probs=50.5
Q ss_pred CCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcC--CCeEEEEEEeCC
Q psy14174 157 SGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSS--EGTITFKLIPAD 218 (269)
Q Consensus 157 ~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~--~~~v~l~v~p~~ 218 (269)
..|++|.+|.++|+|+++| |++||+|++|||.++. +..++...+... +..+.+++.+.+
T Consensus 9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r~g 69 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLPST 69 (79)
T ss_pred CCcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEECC
Confidence 4589999999999999999 6999999999999996 567888888763 678888888754
No 26
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.39 E-value=1.5e-06 Score=82.63 Aligned_cols=73 Identities=21% Similarity=0.467 Sum_probs=65.5
Q ss_pred CCCCCCeEEeccCCCCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcC-CCeEEEEEEeC
Q psy14174 143 SNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSS-EGTITFKLIPA 217 (269)
Q Consensus 143 ~~~~lG~ti~~~~~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~-~~~v~l~v~p~ 217 (269)
.-+++|+.+..... +++.|..+.+|+||+++| |++||.|+.|||.++.+++.++++..++.. |..|+|++.|.
T Consensus 98 ~~~GiG~~i~~~~~-~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~ 171 (406)
T COG0793 98 EFGGIGIELQMEDI-GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA 171 (406)
T ss_pred cccceeEEEEEecC-CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence 56788999988643 689999999999999999 899999999999999999999999999875 67789999996
No 27
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.33 E-value=2.4e-06 Score=79.17 Aligned_cols=70 Identities=24% Similarity=0.574 Sum_probs=59.7
Q ss_pred CCCeEEeccCCCCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHc-CCCeEEEEEEeCC
Q psy14174 146 PLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQS-SEGTITFKLIPAD 218 (269)
Q Consensus 146 ~lG~ti~~~~~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~-~~~~v~l~v~p~~ 218 (269)
++|+.+... .++++|..|.++|||+++| |++||+|++|||.++.+++..++..+++. .+..+.+++.+.+
T Consensus 52 ~lG~~~~~~--~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g 122 (334)
T TIGR00225 52 GIGIQVGMD--DGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAG 122 (334)
T ss_pred EEEEEEEEE--CCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCC
Confidence 578888654 4589999999999999999 69999999999999998877788888765 5678899998864
No 28
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.32 E-value=2.4e-06 Score=80.87 Aligned_cols=73 Identities=25% Similarity=0.376 Sum_probs=59.8
Q ss_pred CCCCeEEeccCCC----CcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHc-CCCeEEEEEEeCC
Q psy14174 145 EPLGATIKTDEES----GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQS-SEGTITFKLIPAD 218 (269)
Q Consensus 145 ~~lG~ti~~~~~~----~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~-~~~~v~l~v~p~~ 218 (269)
.++|+.+...+.. .+++|..|.+||||+++| |+.||+|++|||+++.+++..++..+++. .+..+.+++.+.+
T Consensus 85 ~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g 162 (389)
T PLN00049 85 TGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP 162 (389)
T ss_pred eEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC
Confidence 3677777543221 279999999999999999 69999999999999999888888888875 5678899988754
No 29
>PF02828 L27: L27 domain; InterPro: IPR014775 The L27 domain is found in receptor targeting proteins Lin-2 and Lin-7, as well as some protein kinases and human MPP2 protein.; PDB: 1ZL8_B 1VA8_A 3LRA_A 3UIT_A 1Y74_D 1RSO_B.
Probab=98.29 E-value=8.2e-07 Score=60.91 Aligned_cols=48 Identities=40% Similarity=0.499 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHhhcccccChhhHHHHHHHhcChhHHHHHhhhhccccc
Q psy14174 12 SVSSLLETLQESQSTFSANDEELLFLSSLLQSKELNALVHVHNSIVNE 59 (269)
Q Consensus 12 ~~~~vL~~L~~~~~~~~~~~~d~~~l~~~l~~~~~~~l~~~~~~~~~~ 59 (269)
|++.+++.|+++......+..|..+|+.+|++|.|++|+++||+|...
T Consensus 1 av~~~~e~L~~L~~~~~~~~~~~~eL~~lL~~p~~~aLl~~hD~va~~ 48 (56)
T PF02828_consen 1 AVQRVLELLEELQSLSSASQEDAQELQQLLQSPHFQALLEVHDKVAQK 48 (56)
T ss_dssp HHHHHHHHHHHHHHHTSSTHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhccCCChHHHHHHHHHHcCHHHHHHHHHHHHHHhh
Confidence 578899999999888776679999999999999999999999999875
No 30
>KOG3938|consensus
Probab=98.26 E-value=1.2e-06 Score=77.14 Aligned_cols=82 Identities=34% Similarity=0.527 Sum_probs=70.7
Q ss_pred CceEEEEEeeCCCCCCeEEeccCCCCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCC--CeE
Q psy14174 133 ETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSE--GTI 210 (269)
Q Consensus 133 ~~~r~V~l~k~~~~lG~ti~~~~~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~--~~v 210 (269)
...+.|++.|+...||+||..+ +.+..||.+|.+||..+|--.+++||-|-+|||.++.|+.|.++..+|+... ...
T Consensus 125 Gq~kEv~v~KsedalGlTITDN-G~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~f 203 (334)
T KOG3938|consen 125 GQAKEVEVVKSEDALGLTITDN-GAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETF 203 (334)
T ss_pred CcceeEEEEecccccceEEeeC-CcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCee
Confidence 3457789999999999999875 2468899999999999999889999999999999999999999999999854 455
Q ss_pred EEEEE
Q psy14174 211 TFKLI 215 (269)
Q Consensus 211 ~l~v~ 215 (269)
++++.
T Consensus 204 tlrLi 208 (334)
T KOG3938|consen 204 TLRLI 208 (334)
T ss_pred EEEee
Confidence 55544
No 31
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.24 E-value=7.8e-06 Score=60.41 Aligned_cols=58 Identities=26% Similarity=0.426 Sum_probs=48.7
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcC--CCeEEEEEEeCC
Q psy14174 158 GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSS--EGTITFKLIPAD 218 (269)
Q Consensus 158 ~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~--~~~v~l~v~p~~ 218 (269)
.+++|..|.++++|+++| |++||+|++|||..+.+ ..++...+... +..+.+++.+.+
T Consensus 24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~--~~~~~~~l~~~~~~~~i~l~v~r~g 83 (90)
T cd00987 24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKS--VADLRRALAELKPGDKVTLTVLRGG 83 (90)
T ss_pred CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECC
Confidence 489999999999999999 69999999999999964 45677777654 678899988754
No 32
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.23 E-value=3e-06 Score=84.90 Aligned_cols=73 Identities=29% Similarity=0.557 Sum_probs=60.2
Q ss_pred CCCCCCeEEeccCCCCcEEEEEecCCChhhhcCCCCCCCeEEEEC--C---EecCCCChHHHHHHHHcC-CCeEEEEEEe
Q psy14174 143 SNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVN--G---INVEGKTPGDVLKILQSS-EGTITFKLIP 216 (269)
Q Consensus 143 ~~~~lG~ti~~~~~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VN--G---~~v~~~~~~~~~~~l~~~-~~~v~l~v~p 216 (269)
.-+|+|+.+... .++++|.+|.+||||++++.|++||+|++|| | .++.+++.++++.+|++. |..|+|+|.+
T Consensus 242 ~~~GIGa~l~~~--~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r 319 (667)
T PRK11186 242 SLEGIGAVLQMD--DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILP 319 (667)
T ss_pred ceeEEEEEEEEe--CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEe
Confidence 345789888765 4579999999999999983379999999999 4 366789999999999875 6678999987
Q ss_pred C
Q psy14174 217 A 217 (269)
Q Consensus 217 ~ 217 (269)
.
T Consensus 320 ~ 320 (667)
T PRK11186 320 A 320 (667)
T ss_pred C
Confidence 3
No 33
>KOG3542|consensus
Probab=98.22 E-value=2.2e-06 Score=83.82 Aligned_cols=82 Identities=32% Similarity=0.468 Sum_probs=69.3
Q ss_pred CceEEEEEee--CCCCCCeEEeccCCCC-cEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCe
Q psy14174 133 ETVKIVQLVK--SNEPLGATIKTDEESG-KIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGT 209 (269)
Q Consensus 133 ~~~r~V~l~k--~~~~lG~ti~~~~~~~-~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~ 209 (269)
...|.|.|.| ...++-|.+.||...+ +|||..|.+|+.|++.| ++.||+|++|||++..+.+...+.++|++. ..
T Consensus 534 AK~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnn-th 611 (1283)
T KOG3542|consen 534 AKPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNN-TH 611 (1283)
T ss_pred ccceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCC-ce
Confidence 4568899999 5668999999986444 99999999999999999 599999999999999999999999999754 34
Q ss_pred EEEEEEe
Q psy14174 210 ITFKLIP 216 (269)
Q Consensus 210 v~l~v~p 216 (269)
++++|..
T Consensus 612 LtltvKt 618 (1283)
T KOG3542|consen 612 LTLTVKT 618 (1283)
T ss_pred EEEEEec
Confidence 5555543
No 34
>smart00569 L27 domain in receptor targeting proteins Lin-2 and Lin-7.
Probab=98.21 E-value=1.4e-06 Score=59.10 Aligned_cols=52 Identities=48% Similarity=0.587 Sum_probs=45.8
Q ss_pred HHhHHHHHHHHhhccCCChhHHHHHHhccCchhhhhhhhcccccccccCCCC
Q psy14174 69 MQISLEVLDVLLSRLALNDDCKELFVLLQRPNLQGLLCAHDAVAQKDYYPRL 120 (269)
Q Consensus 69 ~~~~~~v~~~l~~~~~~~~~~~el~~ll~~p~~~~ll~a~d~v~~~~~~~~~ 120 (269)
++.+.++++.|......+.+..+|.++|++|||++++.+||.++...|.+.+
T Consensus 2 ~~~~~~~L~~l~~~~~~~~~~~~L~~ll~~~~~~all~~hd~v~~~~~~~~~ 53 (55)
T smart00569 2 VQRLLELLEELQSLLSPSEDLQELRRLLQSPHLQALLKIHDKVAETVYDPPL 53 (55)
T ss_pred hHHHHHHHHHHHhccCCCccHHHHHHHHcCHHHHHHHHHHHHHHHHhccCCC
Confidence 5678999999998766568899999999999999999999999999887643
No 35
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.15 E-value=2e-05 Score=57.25 Aligned_cols=57 Identities=21% Similarity=0.387 Sum_probs=47.8
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHc--CCCeEEEEEEeCC
Q psy14174 158 GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQS--SEGTITFKLIPAD 218 (269)
Q Consensus 158 ~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~--~~~~v~l~v~p~~ 218 (269)
.|++|..|.+||+|+. | |++||+|++|||.++. +.+++...+.. .+..+.+++.+.+
T Consensus 8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~~~v~l~v~r~g 66 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFK--EAEELIDYIQSKKEGDTVKLKVKREE 66 (79)
T ss_pred cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECC
Confidence 4799999999999986 8 7999999999999995 46678888864 4678889888754
No 36
>KOG3605|consensus
Probab=98.13 E-value=1.2e-06 Score=85.34 Aligned_cols=79 Identities=27% Similarity=0.567 Sum_probs=68.1
Q ss_pred CceEEEEEeeC--CCCCCeEEeccCCCCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeE
Q psy14174 133 ETVKIVQLVKS--NEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTI 210 (269)
Q Consensus 133 ~~~r~V~l~k~--~~~lG~ti~~~~~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v 210 (269)
..+.+|.|.|+ ..-|||++..| +|-.++.||.|+|.| +++|.+|++|||++|....|+.++++|..+-|.|
T Consensus 735 pPV~~V~I~RPd~kyQLGFSVQNG------iICSLlRGGIAERGG-VRVGHRIIEINgQSVVA~pHekIV~lLs~aVGEI 807 (829)
T KOG3605|consen 735 PPVTTVLIRRPDLRYQLGFSVQNG------IICSLLRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVQLLSNAVGEI 807 (829)
T ss_pred CCceEEEeecccchhhccceeeCc------EeehhhcccchhccC-ceeeeeEEEECCceEEeccHHHHHHHHHHhhhhh
Confidence 34567778883 44689999876 577888999999999 7999999999999999999999999999999999
Q ss_pred EEEEEeCC
Q psy14174 211 TFKLIPAD 218 (269)
Q Consensus 211 ~l~v~p~~ 218 (269)
.++-.|..
T Consensus 808 hMKTMPas 815 (829)
T KOG3605|consen 808 HMKTMPAA 815 (829)
T ss_pred hhhcchHH
Confidence 98887754
No 37
>smart00569 L27 domain in receptor targeting proteins Lin-2 and Lin-7.
Probab=97.87 E-value=2.2e-05 Score=53.14 Aligned_cols=47 Identities=43% Similarity=0.575 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHhhcccccChhhHHHHHHHhcChhHHHHHhhhhccccc
Q psy14174 12 SVSSLLETLQESQSTFSANDEELLFLSSLLQSKELNALVHVHNSIVNE 59 (269)
Q Consensus 12 ~~~~vL~~L~~~~~~~~~~~~d~~~l~~~l~~~~~~~l~~~~~~~~~~ 59 (269)
+++.+++.|+++....... +|+.||+++|++|.|++|+++|+++...
T Consensus 1 ~~~~~~~~L~~l~~~~~~~-~~~~~L~~ll~~~~~~all~~hd~v~~~ 47 (55)
T smart00569 1 AVQRLLELLEELQSLLSPS-EDLQELRRLLQSPHLQALLKIHDKVAET 47 (55)
T ss_pred ChHHHHHHHHHHHhccCCC-ccHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 4678999999998776544 7999999999999999999999999875
No 38
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.85 E-value=4.7e-05 Score=73.39 Aligned_cols=57 Identities=23% Similarity=0.286 Sum_probs=45.8
Q ss_pred cEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHH--cCCCeEEEEEEeCC
Q psy14174 159 KIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQ--SSEGTITFKLIPAD 218 (269)
Q Consensus 159 ~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~--~~~~~v~l~v~p~~ 218 (269)
..+|..|.++|||+++| |++||+|++|||+++.+. +++...+. ..+.++.+++.+.+
T Consensus 127 ~~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~--~~l~~~v~~~~~g~~v~v~v~R~g 185 (449)
T PRK10779 127 RPVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDW--DAVRLALVSKIGDESTTITVAPFG 185 (449)
T ss_pred CccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhhccCCceEEEEEeCC
Confidence 34689999999999999 699999999999999654 45554443 34567899998865
No 39
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.84 E-value=0.00011 Score=70.31 Aligned_cols=58 Identities=22% Similarity=0.461 Sum_probs=49.0
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHc--CCCeEEEEEEeCC
Q psy14174 158 GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQS--SEGTITFKLIPAD 218 (269)
Q Consensus 158 ~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~--~~~~v~l~v~p~~ 218 (269)
.+++|..|.+||||+++| |++||+|++|||..+. +..++...+.. .+..+.+++.+.+
T Consensus 257 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~--~~~~~~~~l~~~~~g~~v~l~v~R~g 316 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPIS--SFADLRRAIGTLKPGKKVTLGILRKG 316 (428)
T ss_pred CceEEEEccCCCChHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 589999999999999999 6999999999999996 45567666654 5678899988864
No 40
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.82 E-value=0.00012 Score=65.59 Aligned_cols=69 Identities=16% Similarity=0.236 Sum_probs=53.9
Q ss_pred CCeEEeccCC-CCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHc--CCCeEEEEEEeCC
Q psy14174 147 LGATIKTDEE-SGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQS--SEGTITFKLIPAD 218 (269)
Q Consensus 147 lG~ti~~~~~-~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~--~~~~v~l~v~p~~ 218 (269)
+|++.....+ ..|+.|..+.++++|++.| |+.||+|++|||.++. +.+++.+++.+ .+..++++|.+.+
T Consensus 179 lgi~p~~~~g~~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~--~~~~~~~~l~~~~~~~~v~l~V~R~G 250 (259)
T TIGR01713 179 IRLSPVMKNDKLEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLR--DPEQAFQALQMLREETNLTLTVERDG 250 (259)
T ss_pred EeEEEEEeCCceeEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCeEEEEEEECC
Confidence 4555432211 2489999999999999999 6999999999999995 45677777766 4468999999865
No 41
>PRK10942 serine endoprotease; Provisional
Probab=97.71 E-value=0.00015 Score=70.28 Aligned_cols=58 Identities=26% Similarity=0.382 Sum_probs=51.7
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeEEEEEEeCC
Q psy14174 158 GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPAD 218 (269)
Q Consensus 158 ~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~l~v~p~~ 218 (269)
.+++|..|.++|+|+++| |++||+|++|||+++. +.+++.++++..+..+.|+|.+.+
T Consensus 408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~--s~~dl~~~l~~~~~~v~l~V~R~g 465 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVK--NIAELRKILDSKPSVLALNIQRGD 465 (473)
T ss_pred CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCCeEEEEEEECC
Confidence 479999999999999999 6999999999999995 567999999887788899998854
No 42
>PRK10139 serine endoprotease; Provisional
Probab=97.67 E-value=0.00015 Score=70.00 Aligned_cols=58 Identities=21% Similarity=0.397 Sum_probs=51.2
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeEEEEEEeCC
Q psy14174 158 GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPAD 218 (269)
Q Consensus 158 ~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~l~v~p~~ 218 (269)
.|++|..|.++|+|+++| |++||+|++|||.++ .+.+++...+++..+.+.|++.+.+
T Consensus 390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v--~~~~~~~~~l~~~~~~v~l~v~R~g 447 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRV--NSIAEMRKVLAAKPAIIALQIVRGN 447 (455)
T ss_pred CceEEEEeCCCChHHHcC-CCCCCEEEEECCEEc--CCHHHHHHHHHhCCCeEEEEEEECC
Confidence 479999999999999999 699999999999999 4567899999876788899998854
No 43
>PRK10139 serine endoprotease; Provisional
Probab=97.64 E-value=0.00025 Score=68.56 Aligned_cols=58 Identities=14% Similarity=0.332 Sum_probs=49.5
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHc--CCCeEEEEEEeCC
Q psy14174 158 GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQS--SEGTITFKLIPAD 218 (269)
Q Consensus 158 ~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~--~~~~v~l~v~p~~ 218 (269)
.|++|..|.++|||+++| |++||+|++|||+++. +..++...+.. .+..+.+++.+.+
T Consensus 290 ~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l~V~R~G 349 (455)
T PRK10139 290 RGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNG 349 (455)
T ss_pred CceEEEEECCCChHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 488999999999999999 6999999999999995 55788777754 5778889888764
No 44
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.63 E-value=0.0002 Score=68.54 Aligned_cols=58 Identities=26% Similarity=0.496 Sum_probs=51.1
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHc--CCCeEEEEEEeCC
Q psy14174 158 GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQS--SEGTITFKLIPAD 218 (269)
Q Consensus 158 ~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~--~~~~v~l~v~p~~ 218 (269)
.+++|..|.++|+|+++| |++||.|++|||.++. +.+++.+++++ .++.+.|++.+.+
T Consensus 362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~--s~~d~~~~l~~~~~g~~v~l~v~R~g 421 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVS--SVAELRKVLDRAKKGGRVALLILRGG 421 (428)
T ss_pred CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 589999999999999999 6999999999999995 56788888875 4788999998854
No 45
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.61 E-value=0.00025 Score=66.27 Aligned_cols=58 Identities=21% Similarity=0.350 Sum_probs=49.6
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHc--CCCeEEEEEEeCC
Q psy14174 158 GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQS--SEGTITFKLIPAD 218 (269)
Q Consensus 158 ~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~--~~~~v~l~v~p~~ 218 (269)
.|++|.+|.++|||+++| |++||+|++|||.++. +..++...++. .++.+.+++.+..
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~g 337 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVI--GAEELMDRIAETRPGSKVMVTVLRQG 337 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 489999999999999999 6999999999999995 45677777764 5788999998854
No 46
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.59 E-value=0.00026 Score=67.75 Aligned_cols=57 Identities=23% Similarity=0.284 Sum_probs=46.9
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeEEEEEEeC
Q psy14174 158 GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPA 217 (269)
Q Consensus 158 ~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~l~v~p~ 217 (269)
.+.+|..|.++|||+++| +++||+|++|||.++. +..++.+.+....+.+.+.+.+.
T Consensus 128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~--~~~dl~~~ia~~~~~v~~~I~r~ 184 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIP--GFKDVRQQIADIAGEPMVEILAE 184 (420)
T ss_pred CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhhcccceEEEEEe
Confidence 467899999999999999 6999999999999995 44566666655557888888774
No 47
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.58 E-value=0.00033 Score=67.58 Aligned_cols=57 Identities=18% Similarity=0.367 Sum_probs=48.9
Q ss_pred cEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHc-CCCeEEEEEEeCC
Q psy14174 159 KIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQS-SEGTITFKLIPAD 218 (269)
Q Consensus 159 ~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~-~~~~v~l~v~p~~ 218 (269)
+.+|..|.+||||+++| |++||+|++|||.++. +.+++...++. .+..+.+++.+.+
T Consensus 222 ~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g 279 (449)
T PRK10779 222 EPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLT--QWQTFVTLVRDNPGKPLALEIERQG 279 (449)
T ss_pred CcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCCCEEEEEEEECC
Confidence 57899999999999999 6999999999999994 56788888866 4567899988865
No 48
>PRK10898 serine endoprotease; Provisional
Probab=97.56 E-value=0.00039 Score=65.05 Aligned_cols=58 Identities=24% Similarity=0.326 Sum_probs=48.3
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHH--cCCCeEEEEEEeCC
Q psy14174 158 GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQ--SSEGTITFKLIPAD 218 (269)
Q Consensus 158 ~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~--~~~~~v~l~v~p~~ 218 (269)
.|++|..|.++|||+++| |++||+|++|||.++.+ ..+....+. ..+..+.+++.+.+
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~~l~~~l~~~~~g~~v~l~v~R~g 338 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAIS--ALETMDQVAEIRPGSVIPVVVMRDD 338 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECC
Confidence 589999999999999999 69999999999999954 456666664 35778999998854
No 49
>PRK10942 serine endoprotease; Provisional
Probab=97.56 E-value=0.00038 Score=67.57 Aligned_cols=58 Identities=19% Similarity=0.347 Sum_probs=48.9
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHc--CCCeEEEEEEeCC
Q psy14174 158 GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQS--SEGTITFKLIPAD 218 (269)
Q Consensus 158 ~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~--~~~~v~l~v~p~~ 218 (269)
.|++|..|.++|||+++| |+.||+|++|||..+. +..++...+.. .+..+.+++.+..
T Consensus 311 ~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~G 370 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTLGLLRDG 370 (473)
T ss_pred CceEEEEECCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 489999999999999999 6999999999999995 45677777754 4678888888764
No 50
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=97.55 E-value=5.7e-05 Score=51.31 Aligned_cols=34 Identities=47% Similarity=0.793 Sum_probs=27.4
Q ss_pred eeeeecccCCCCCCCCCCCCCccccCCCCEEEEE-eCCCCCC
Q psy14174 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVV-SQDDAYW 269 (269)
Q Consensus 229 ~vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv-~~~d~~W 269 (269)
|+||.+||.+.. ...|+|++||+++|+ ++++.+|
T Consensus 1 ~~~a~~d~~~~~-------~~~Ls~~~Gd~i~v~~~~~~~~w 35 (55)
T PF07653_consen 1 YYRAIFDYVAED-------PDELSFKKGDVIEVLGEKDDDGW 35 (55)
T ss_dssp EEEESSSBESSS-------TTB-EB-TTEEEEEEEEECSTSE
T ss_pred CEEEeEEECCCC-------CCceEEecCCEEEEEEeecCCCE
Confidence 679999999966 446999999999999 8887777
No 51
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.54 E-value=0.00034 Score=66.89 Aligned_cols=58 Identities=17% Similarity=0.304 Sum_probs=49.8
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHc-CCCeEEEEEEeCC
Q psy14174 158 GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQS-SEGTITFKLIPAD 218 (269)
Q Consensus 158 ~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~-~~~~v~l~v~p~~ 218 (269)
.+++|..|.++|||+++| |++||+|++|||+++. +.+++...++. .+..+.+++.+.+
T Consensus 203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g 261 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLR--SWTDFVSAVKENPGKSMDIKVERNG 261 (420)
T ss_pred cCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCceEEEEEECC
Confidence 368999999999999999 6999999999999995 56788888876 4567889888865
No 52
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=97.45 E-value=8e-05 Score=49.10 Aligned_cols=32 Identities=47% Similarity=0.873 Sum_probs=27.8
Q ss_pred eeecccCCCCCCCCCCCCCccccCCCCEEEEEeCCCCCC
Q psy14174 231 RAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269 (269)
Q Consensus 231 Ra~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d~~W 269 (269)
+|+|+|.+.. ...|+|++||+++|+++.|..|
T Consensus 1 ~Alydf~~~~-------~~eLs~~~Gd~i~v~~~~~~~W 32 (48)
T PF00018_consen 1 RALYDFDAED-------PDELSFKKGDIIEVLEKSDDGW 32 (48)
T ss_dssp EESSCBETSS-------TTBSEB-TTEEEEEEEESSSSE
T ss_pred CCCeeeCCCC-------CCEEeEECCCEEEEEEecCCCE
Confidence 6899999888 5579999999999999988888
No 53
>KOG0708|consensus
Probab=97.40 E-value=0.00014 Score=67.34 Aligned_cols=83 Identities=28% Similarity=0.396 Sum_probs=66.9
Q ss_pred EECCEecCCCChHHHHHHHHcCCCeEEEEEEe--CC--------------------CcCcccccceeeeeecccCCCCCC
Q psy14174 185 EVNGINVEGKTPGDVLKILQSSEGTITFKLIP--AD--------------------NKLGYRESKIRVRAHFDYDASSDP 242 (269)
Q Consensus 185 ~VNG~~v~~~~~~~~~~~l~~~~~~v~l~v~p--~~--------------------~~~~~~~~~~~vRa~fdy~p~~D~ 242 (269)
.+||....+.+|.++...++.++.++++++.- .. ..........||+++|||+...+
T Consensus 2 ~~~~~~~~~~~~~~~a~~l~~sg~~~~i~~q~~~e~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~d~d~~~~- 80 (359)
T KOG0708|consen 2 SVNGVDGRNATHEDAAAALKTSGDSVYIRAQYRPEEYDKFELKIHDLEVLHVMDSMYQSRQEWRCLYVDALFDYDLDRG- 80 (359)
T ss_pred cccccccccchHHHHHHHhhcCCCceEEEEEechhhhchhhcccCCcchHHHHHhhhccCCCCceeEeeccccccccCC-
Confidence 57899999999999999999999999888642 21 01112244689999999999998
Q ss_pred CCCCCCCccccCCCCEEEEEeCCCCCC
Q psy14174 243 YIPCKDAGLSFNKGDILHVVSQDDAYW 269 (269)
Q Consensus 243 ~ipc~e~gL~F~~GDIL~vv~~~d~~W 269 (269)
.|....+++|..|||+|+++..|..|
T Consensus 81 -~~~~~~~~~~~~~~i~~~~~~~~~e~ 106 (359)
T KOG0708|consen 81 -SPGYSRAQSFLYGQILHLISRSDDEW 106 (359)
T ss_pred -CCCcchhhhhhhhhhhhccccccHHH
Confidence 55666699999999999999888777
No 54
>PF09060 L27_N: L27_N; InterPro: IPR015145 The L27_N domain plays a role in the biogenesis of tight junctions and in the establishment of cell polarity in epithelial cells. Each L27_N domain consists of three alpha-helices, the first two of which form an antiparallel coiled-coil. Two L27 domains come together to form a four-helical bundle with the antiparallel coiled-coils formed by the first two helices. The third helix of each domain forms another coiled-coil packing at one end of the four-helix bundle, creating a large hydrophobic interface: the hydrophobic interactions are the major force that drives heterodimer formation []. ; PDB: 1Y76_B 3UIT_B 1VF6_C.
Probab=97.35 E-value=0.00017 Score=47.03 Aligned_cols=45 Identities=24% Similarity=0.481 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhccc--ccChhhHHHHHHHhcChhHHHHHhhhhccc
Q psy14174 13 VSSLLETLQESQSTF--SANDEELLFLSSLLQSKELNALVHVHNSIV 57 (269)
Q Consensus 13 ~~~vL~~L~~~~~~~--~~~~~d~~~l~~~l~~~~~~~l~~~~~~~~ 57 (269)
+.++|.+|+.++... .++++|+.++.++++..+|++++++|+.+.
T Consensus 2 leell~sLk~iqh~L~D~qSQ~Dv~lllqLl~~~dFq~A~~IhnaVa 48 (49)
T PF09060_consen 2 LEELLSSLKHIQHCLNDSQSQQDVELLLQLLQNSDFQNAFKIHNAVA 48 (49)
T ss_dssp HHHHHHHHHHHHCCH-SHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHhhHHhHHHHHHHHhhHhHHHHHHHHHHhc
Confidence 678999999997775 246889999999999999999999998764
No 55
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=97.31 E-value=0.002 Score=48.28 Aligned_cols=69 Identities=22% Similarity=0.417 Sum_probs=44.9
Q ss_pred CCCeEEeccCCCCcEEEEEecCC--------ChhhhcCC-CCCCCeEEEECCEecCCCChHHHHHHHHc-CCCeEEEEEE
Q psy14174 146 PLGATIKTDEESGKIVVARVMHG--------GAADRSGL-IHVGDEVCEVNGINVEGKTPGDVLKILQS-SEGTITFKLI 215 (269)
Q Consensus 146 ~lG~ti~~~~~~~~i~V~~V~~g--------g~A~r~Gl-L~~GD~Il~VNG~~v~~~~~~~~~~~l~~-~~~~v~l~v~ 215 (269)
.||.-+... .+++.|++|.+| ||-.+.|. +++||.|++|||+++... .....+|.+ ++..|.|+|.
T Consensus 2 ~LGAd~~~~--~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~--~~~~~lL~~~agk~V~Ltv~ 77 (88)
T PF14685_consen 2 LLGADFSYD--NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTAD--ANPYRLLEGKAGKQVLLTVN 77 (88)
T ss_dssp B-SEEEEEE--TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTT--B-HHHHHHTTTTSEEEEEEE
T ss_pred ccceEEEEc--CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCC--CCHHHHhcccCCCEEEEEEe
Confidence 467777766 468889999987 56566652 469999999999999643 245666654 6778999998
Q ss_pred eCC
Q psy14174 216 PAD 218 (269)
Q Consensus 216 p~~ 218 (269)
+..
T Consensus 78 ~~~ 80 (88)
T PF14685_consen 78 RKP 80 (88)
T ss_dssp -ST
T ss_pred cCC
Confidence 854
No 56
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.24 E-value=0.001 Score=63.35 Aligned_cols=50 Identities=18% Similarity=0.383 Sum_probs=40.6
Q ss_pred EEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeEEEEEEe
Q psy14174 162 VARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIP 216 (269)
Q Consensus 162 V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~l~v~p 216 (269)
|..|.+||+|+++| |++||+|++|||..+. +..++...+. +..+.+++.+
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~--Dw~D~~~~l~--~e~l~L~V~~ 51 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPR--DLIDYQFLCA--DEELELEVLD 51 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHhc--CCcEEEEEEc
Confidence 67789999999999 6999999999999995 4556666663 4668888863
No 57
>KOG0606|consensus
Probab=97.22 E-value=0.00098 Score=69.08 Aligned_cols=80 Identities=25% Similarity=0.390 Sum_probs=67.8
Q ss_pred EEEeeCCCCCCeEEeccC---CCCc-----EEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCe
Q psy14174 138 VQLVKSNEPLGATIKTDE---ESGK-----IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGT 209 (269)
Q Consensus 138 V~l~k~~~~lG~ti~~~~---~~~~-----i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~ 209 (269)
+.+++++..|||+++.-. +... -.|..|..|+||..+| ++.||-|+.|||..+.+..|.++++++-+.+..
T Consensus 630 I~i~~~~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~gn~ 708 (1205)
T KOG0606|consen 630 ITIHFSGKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKSGNK 708 (1205)
T ss_pred eeeeccccccCceeeeEEEecCCcccceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhcCCe
Confidence 678889999999875431 1122 3478899999999999 599999999999999999999999999999999
Q ss_pred EEEEEEeCC
Q psy14174 210 ITFKLIPAD 218 (269)
Q Consensus 210 v~l~v~p~~ 218 (269)
+++.+.+.+
T Consensus 709 v~~~ttple 717 (1205)
T KOG0606|consen 709 VTLRTTPLE 717 (1205)
T ss_pred eEEEeeccc
Confidence 999988764
No 58
>KOG2199|consensus
Probab=97.21 E-value=0.00015 Score=67.36 Aligned_cols=37 Identities=41% Similarity=0.787 Sum_probs=33.4
Q ss_pred cceeeeeecccCCCCCCCCCCCCCccccCCCCEEEEEeCCCCCC
Q psy14174 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269 (269)
Q Consensus 226 ~~~~vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d~~W 269 (269)
....|||++|+...+ +..|+|++|||++|++..|+||
T Consensus 214 ~~rkVRALYDFeAaE-------~nELsFkaGdIItVLd~s~~~W 250 (462)
T KOG2199|consen 214 VVRKVRALYDFEAAE-------DNELSFKAGDIITVLDDSDPNW 250 (462)
T ss_pred cchhhhhhhcccccC-------CCccceecCcEEEEcccCCcch
Confidence 345799999999888 5679999999999999999999
No 59
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=97.16 E-value=0.0022 Score=60.77 Aligned_cols=71 Identities=15% Similarity=0.429 Sum_probs=53.8
Q ss_pred eeCCCCCCeEEeccCCCCcEEEEEe--------cCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcC-CCeEE
Q psy14174 141 VKSNEPLGATIKTDEESGKIVVARV--------MHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSS-EGTIT 211 (269)
Q Consensus 141 ~k~~~~lG~ti~~~~~~~~i~V~~V--------~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~-~~~v~ 211 (269)
.-+|.++|+.+... |++|... ..++||+++| |++||+|++|||.++. +.+++.++++.. +..+.
T Consensus 92 ~pgG~~iGI~l~t~----GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~--s~~DL~~iL~~~~g~~V~ 164 (402)
T TIGR02860 92 IPGGQSIGVKLNTK----GVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIK--NMDDLANLINKAGGEKLT 164 (402)
T ss_pred EECCEEEEEEEecC----EEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCeEE
Confidence 33677788877653 6776433 2368999999 6999999999999995 567888888765 56788
Q ss_pred EEEEeCC
Q psy14174 212 FKLIPAD 218 (269)
Q Consensus 212 l~v~p~~ 218 (269)
+++.+..
T Consensus 165 LtV~R~G 171 (402)
T TIGR02860 165 LTIERGG 171 (402)
T ss_pred EEEEECC
Confidence 8888764
No 60
>KOG1118|consensus
Probab=97.07 E-value=0.0003 Score=63.42 Aligned_cols=39 Identities=26% Similarity=0.620 Sum_probs=35.6
Q ss_pred cccceeeeeecccCCCCCCCCCCCCCccccCCCCEEEEEeCCCCCC
Q psy14174 224 RESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269 (269)
Q Consensus 224 ~~~~~~vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d~~W 269 (269)
......+||+||++|+. |..|.|+.|||+.++++-|+||
T Consensus 303 ~~~~p~cralYdFepen-------EgEL~fkeGDlI~l~~QIdenW 341 (366)
T KOG1118|consen 303 QMDQPCCRALYDFEPEN-------EGELDFKEGDLITLTNQIDENW 341 (366)
T ss_pred cccchhheeeeccCCCC-------CCccCcccCceeeehhhcCcch
Confidence 34567899999999999 8889999999999999999999
No 61
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=96.98 E-value=0.015 Score=47.17 Aligned_cols=82 Identities=17% Similarity=0.295 Sum_probs=56.3
Q ss_pred CceEEEEEee-----CCCCCCeEEeccCC----CCcEEEEEecCCChhhhcCCCCC-CCeEEEECCEecCCCChHHHHHH
Q psy14174 133 ETVKIVQLVK-----SNEPLGATIKTDEE----SGKIVVARVMHGGAADRSGLIHV-GDEVCEVNGINVEGKTPGDVLKI 202 (269)
Q Consensus 133 ~~~r~V~l~k-----~~~~lG~ti~~~~~----~~~i~V~~V~~gg~A~r~GlL~~-GD~Il~VNG~~v~~~~~~~~~~~ 202 (269)
...|.|.+.- +.+.||++++-... ..++-|.+|.++|||+++|+ .+ .|.|+.+++..+.+ .+++.+.
T Consensus 9 ~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL-~p~~DyIig~~~~~l~~--~~~l~~~ 85 (138)
T PF04495_consen 9 QTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGL-EPFFDYIIGIDGGLLDD--EDDLFEL 85 (138)
T ss_dssp SSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--S--TCHHHHH
T ss_pred CeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCCc-cccccEEEEccceecCC--HHHHHHH
Confidence 4567777753 35679999987532 34788999999999999995 66 79999999988874 4577778
Q ss_pred HHc-CCCeEEEEEEeC
Q psy14174 203 LQS-SEGTITFKLIPA 217 (269)
Q Consensus 203 l~~-~~~~v~l~v~p~ 217 (269)
++. .+..+.|.|-.+
T Consensus 86 v~~~~~~~l~L~Vyns 101 (138)
T PF04495_consen 86 VEANENKPLQLYVYNS 101 (138)
T ss_dssp HHHTTTS-EEEEEEET
T ss_pred HHHcCCCcEEEEEEEC
Confidence 765 467788888764
No 62
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=96.92 E-value=0.00066 Score=45.07 Aligned_cols=31 Identities=42% Similarity=0.841 Sum_probs=24.8
Q ss_pred eecccCCCCCCCCCCCCCccccCCCCEEEEEeCCCCCC
Q psy14174 232 AHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269 (269)
Q Consensus 232 a~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d~~W 269 (269)
|+++|.+.. +..|+|++||+|.|+.+.+..|
T Consensus 1 Al~~y~~~~-------~dELs~~~Gd~i~v~~~~~~~W 31 (49)
T PF14604_consen 1 ALYDYEAQD-------PDELSFKKGDVITVLEKSDDGW 31 (49)
T ss_dssp ESSCBCSSS-------TTB-EB-TTEEEEEEEESSTSE
T ss_pred CCccCCCCC-------cCEeeEcCCCEEEEEEeCCCCE
Confidence 578888877 4579999999999999988888
No 63
>KOG1738|consensus
Probab=96.88 E-value=0.0014 Score=64.33 Aligned_cols=73 Identities=27% Similarity=0.327 Sum_probs=63.9
Q ss_pred eCCCCCCeEEeccCCCCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeEEEEEE
Q psy14174 142 KSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLI 215 (269)
Q Consensus 142 k~~~~lG~ti~~~~~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~l~v~ 215 (269)
|.++++|+.|...- ++..+|+.+.+++||++.+.|+.||+++.||+..+.|+.+..++..++....-|.++|.
T Consensus 210 kp~eglg~~I~Ssy-dg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lk 282 (638)
T KOG1738|consen 210 SPSEGLGLYIDSSY-DGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLK 282 (638)
T ss_pred CcccCCceEEeeec-CCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeee
Confidence 57889999998763 35788999999999999999999999999999999999999999999887666666654
No 64
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=96.76 E-value=0.002 Score=62.15 Aligned_cols=73 Identities=23% Similarity=0.395 Sum_probs=50.9
Q ss_pred eEEEEEeeCCC--CCCeEEeccCCCCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeEEE
Q psy14174 135 VKIVQLVKSNE--PLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITF 212 (269)
Q Consensus 135 ~r~V~l~k~~~--~lG~ti~~~~~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~l 212 (269)
+..+...|..+ .||+.+... ++...|+.|.+||||+++| |.+||.|+.|||.+-.-.. -+++..+.+
T Consensus 439 ~gL~~~~~~~~~~~LGl~v~~~--~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~s~~l~~--------~~~~d~i~v 507 (558)
T COG3975 439 FGLTFTPKPREAYYLGLKVKSE--GGHEKITFVFPGGPAYKAG-LSPGDKIVAINGISDQLDR--------YKVNDKIQV 507 (558)
T ss_pred cceEEEecCCCCcccceEeccc--CCeeEEEecCCCChhHhcc-CCCccEEEEEcCccccccc--------cccccceEE
Confidence 44444455444 678777665 6789999999999999999 6999999999999221111 134556666
Q ss_pred EEEeCC
Q psy14174 213 KLIPAD 218 (269)
Q Consensus 213 ~v~p~~ 218 (269)
.+.+.+
T Consensus 508 ~~~~~~ 513 (558)
T COG3975 508 HVFREG 513 (558)
T ss_pred EEccCC
Confidence 665543
No 65
>KOG4792|consensus
Probab=96.67 E-value=0.00099 Score=57.83 Aligned_cols=38 Identities=34% Similarity=0.720 Sum_probs=33.4
Q ss_pred ccceeeeeecccCCCCCCCCCCCCCccccCCCCEEEEEeCCCCCC
Q psy14174 225 ESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269 (269)
Q Consensus 225 ~~~~~vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d~~W 269 (269)
....|||++||+.+.. +-.|+|++||||.|+++....|
T Consensus 122 ~~~~~vr~~fdF~G~d-------eeDLPFkkGeiL~I~~K~eeqW 159 (293)
T KOG4792|consen 122 EEAEYVRALFDFNGND-------EEDLPFKKGEILRIRDKPEEQW 159 (293)
T ss_pred hhhhheeeeeccCCCc-------cccCCcccCcEEEEecCcHHHh
Confidence 3468999999999987 6789999999999999887777
No 66
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=96.65 E-value=0.003 Score=41.87 Aligned_cols=35 Identities=46% Similarity=0.794 Sum_probs=30.0
Q ss_pred eeeeeecccCCCCCCCCCCCCCccccCCCCEEEEEeCCCCCC
Q psy14174 228 IRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269 (269)
Q Consensus 228 ~~vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d~~W 269 (269)
.+++|+++|.+.. ...|+|++||++.|+.+.+..|
T Consensus 3 ~~~~a~~~~~~~~-------~~~l~~~~Gd~v~v~~~~~~~w 37 (58)
T smart00326 3 PQVRALYDYTAQD-------PDELSFKKGDIITVLEKSDDGW 37 (58)
T ss_pred cEEEEeeeeCCCC-------CCCCCCCCCCEEEEEEcCCCCe
Confidence 4678999999855 5579999999999999988878
No 67
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=96.49 E-value=0.0042 Score=40.65 Aligned_cols=34 Identities=50% Similarity=0.859 Sum_probs=28.7
Q ss_pred eeeeecccCCCCCCCCCCCCCccccCCCCEEEEEeCCCCCC
Q psy14174 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269 (269)
Q Consensus 229 ~vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d~~W 269 (269)
+++|+++|.+.. ...|+|++||++.|+...+..|
T Consensus 1 ~~~a~~~~~~~~-------~~~l~~~~Gd~v~v~~~~~~~w 34 (54)
T cd00174 1 YVRALYDYDARD-------PDELSFKKGDIIEVLEKSDDGW 34 (54)
T ss_pred CEEEEEeeCCCC-------CCCCCCCCCCEEEEEEcCCCCe
Confidence 357899999887 4589999999999999877777
No 68
>PF09045 L27_2: L27_2; InterPro: IPR015132 The L27_2 domain is a protein-protein interaction domain capable of organising scaffold proteins into supramolecular assemblies by formation of heteromeric L27_2 domain complexes. L27_2 domain-mediated protein assemblies have been shown to play essential roles in cellular processes including asymmetric cell division, establishment and maintenance of cell polarity, and clustering of receptors and ion channels. Members of this family form specific heterotetrameric complexes, in which each domain contains three alpha-helices. The two N-terminal helices of each L27_2 domain pack together to form a tight, four-helix bundle in the heterodimer, whilst the third helix of each L27_2 domain forms another four-helix bundle that assembles the two units of the heterodimer into a tetramer []. ; PDB: 3UIT_A 1VF6_B.
Probab=96.22 E-value=0.0053 Score=41.88 Aligned_cols=46 Identities=26% Similarity=0.384 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhccc-----ccChhhHHHHHHHhcChhHHHHHhhhhccccc
Q psy14174 14 SSLLETLQESQSTF-----SANDEELLFLSSLLQSKELNALVHVHNSIVNE 59 (269)
Q Consensus 14 ~~vL~~L~~~~~~~-----~~~~~d~~~l~~~l~~~~~~~l~~~~~~~~~~ 59 (269)
+++|..|++++... ....+.+..|+.+|+||.|+.++.++.+|.+.
T Consensus 3 ~~al~~lerlq~KL~~rGd~s~~e~L~~l~~~LqSPLF~~iL~LQqSi~qL 53 (58)
T PF09045_consen 3 QRALQALERLQAKLKERGDTSHSEKLSLLKDTLQSPLFNQILTLQQSIKQL 53 (58)
T ss_dssp CHHHHHHHHHHHHHHHCT--TTHHHHHHHHHHHH-HHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 36777777776664 34578899999999999999999999999875
No 69
>KOG3129|consensus
Probab=96.17 E-value=0.014 Score=50.13 Aligned_cols=59 Identities=24% Similarity=0.410 Sum_probs=43.8
Q ss_pred cEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCC-hHHHHHHHHcC-CCeEEEEEEeCC
Q psy14174 159 KIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT-PGDVLKILQSS-EGTITFKLIPAD 218 (269)
Q Consensus 159 ~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~-~~~~~~~l~~~-~~~v~l~v~p~~ 218 (269)
-++|..|.++|||+++| |++||+|+++..+.-.+.. ..++....+.. +..+.+++.+.+
T Consensus 140 Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g 200 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREG 200 (231)
T ss_pred eEEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCC
Confidence 47799999999999999 6999999998777665543 44444444444 455678887754
No 70
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.019 Score=53.39 Aligned_cols=58 Identities=29% Similarity=0.476 Sum_probs=47.3
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHc--CCCeEEEEEEeCC
Q psy14174 158 GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQS--SEGTITFKLIPAD 218 (269)
Q Consensus 158 ~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~--~~~~v~l~v~p~~ 218 (269)
.|++|..|.++|||+++| ++.||.|+++||.++.+ ..+....+.. .+..+.+++.+..
T Consensus 270 ~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~--~~~l~~~v~~~~~g~~v~~~~~r~g 329 (347)
T COG0265 270 AGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVAS--LSDLVAAVASNRPGDEVALKLLRGG 329 (347)
T ss_pred CceEEEecCCCChHHHcC-CCCCCEEEEECCEEccC--HHHHHHHHhccCCCCEEEEEEEECC
Confidence 468999999999999999 69999999999999954 4455555543 4678899998853
No 71
>KOG1029|consensus
Probab=95.65 E-value=0.009 Score=59.96 Aligned_cols=35 Identities=46% Similarity=0.887 Sum_probs=31.5
Q ss_pred eeeeeecccCCCCCCCCCCCCCccccCCCCEEEEEeCCCCCC
Q psy14174 228 IRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269 (269)
Q Consensus 228 ~~vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d~~W 269 (269)
.-|-|++||.... +..|+|++|||+.|+|++|+.|
T Consensus 1054 ~qviamYdY~Aqn-------dDELsF~kgdiI~VlnkdepeW 1088 (1118)
T KOG1029|consen 1054 CQVIAMYDYEAQN-------DDELSFKKGDIINVLNKDEPEW 1088 (1118)
T ss_pred ceeEEeeccccCC-------cccccccCCCEEEecCCCChhh
Confidence 4577999999887 5579999999999999999999
No 72
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=95.48 E-value=0.1 Score=47.20 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=40.1
Q ss_pred EEEecCCChh---hhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcC--CCeEEEEEEeCC
Q psy14174 162 VARVMHGGAA---DRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSS--EGTITFKLIPAD 218 (269)
Q Consensus 162 V~~V~~gg~A---~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~--~~~v~l~v~p~~ 218 (269)
=-++.||+.+ .+.| |+.||.+++|||.++. ..+++.+++++. ...++|+|.+.+
T Consensus 208 GYrl~Pgkd~~lF~~~G-Lq~GDva~sING~dL~--D~~qa~~l~~~L~~~tei~ltVeRdG 266 (276)
T PRK09681 208 GYAVKPGADRSLFDASG-FKEGDIAIALNQQDFT--DPRAMIALMRQLPSMDSIQLTVLRKG 266 (276)
T ss_pred EEEECCCCcHHHHHHcC-CCCCCEEEEeCCeeCC--CHHHHHHHHHHhccCCeEEEEEEECC
Confidence 3455555433 6678 6999999999999996 455667777653 477899999976
No 73
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=95.34 E-value=0.092 Score=46.22 Aligned_cols=79 Identities=19% Similarity=0.438 Sum_probs=56.1
Q ss_pred ceEEEEEeeCCCCCCeEEeccCCCCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcC--CCeEE
Q psy14174 134 TVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSS--EGTIT 211 (269)
Q Consensus 134 ~~r~V~l~k~~~~lG~ti~~~~~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~--~~~v~ 211 (269)
.+|..-+.|++.-+|+.+..++ .++.-+.+| |+.||..++||+.+++ +++++..+++.. ...+.
T Consensus 194 yIrltpv~r~eki~Gyr~~pgk-----------d~slF~~sg-lq~GDIavaiNnldlt--dp~~m~~llq~l~~m~s~q 259 (275)
T COG3031 194 YIRLTPVIRNEKIEGYRFEPGK-----------DGSLFYKSG-LQRGDIAVAINNLDLT--DPEDMFRLLQMLRNMPSLQ 259 (275)
T ss_pred heEeeeEeeCCceEEEEecCCC-----------Ccchhhhhc-CCCcceEEEecCcccC--CHHHHHHHHHhhhcCcceE
Confidence 3555555567777777777764 345667889 6999999999999994 566777777653 46788
Q ss_pred EEEEeCCCcCcccccceeee
Q psy14174 212 FKLIPADNKLGYRESKIRVR 231 (269)
Q Consensus 212 l~v~p~~~~~~~~~~~~~vR 231 (269)
|+|.+.+ ....++|+
T Consensus 260 lTv~R~G-----~rhdInV~ 274 (275)
T COG3031 260 LTVIRRG-----KRHDINVR 274 (275)
T ss_pred EEEEecC-----ccceeeec
Confidence 9998876 44445543
No 74
>KOG4225|consensus
Probab=95.31 E-value=0.013 Score=55.45 Aligned_cols=34 Identities=41% Similarity=0.787 Sum_probs=31.1
Q ss_pred eeeeecccCCCCCCCCCCCCCccccCCCCEEEEEeCCCCCC
Q psy14174 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269 (269)
Q Consensus 229 ~vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d~~W 269 (269)
--||+|+|.+.. .-.|+|++|||+.|.-+-|.||
T Consensus 232 ~aralf~F~~qt-------~kEL~~~kGDIVyI~rkvD~nW 265 (489)
T KOG4225|consen 232 AARALFDFEAQT-------PKELPFNKGDIVYILRKVDQNW 265 (489)
T ss_pred hhhheeccccCC-------ccccccCCCCEEEEEeeccCce
Confidence 378999999987 5579999999999999999999
No 75
>KOG3532|consensus
Probab=95.25 E-value=0.065 Score=53.46 Aligned_cols=74 Identities=19% Similarity=0.362 Sum_probs=59.9
Q ss_pred Eee-CCCCCCeEEeccCCCCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeEEEEEEeC
Q psy14174 140 LVK-SNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPA 217 (269)
Q Consensus 140 l~k-~~~~lG~ti~~~~~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~l~v~p~ 217 (269)
+.+ .+.++|+.+.... +..+-|-.|.+.++|.++. +.+||++++|||+++ .+..++...++...+.++..+.+.
T Consensus 380 ~~~~~s~~ig~vf~~~~-~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi--~s~~q~~~~~~s~~~~~~~l~~~~ 454 (1051)
T KOG3532|consen 380 SRYDVSSPIGLVFDKNT-NRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPI--RSERQATRFLQSTTGDLTVLVERS 454 (1051)
T ss_pred ccccccCceeEEEecCC-ceEEEEEEecCCChhhHhc-CCCcceEEEecCccc--hhHHHHHHHHHhcccceEEEEeec
Confidence 344 5667888776542 3467799999999999999 589999999999999 567899999999988887776553
No 76
>KOG3601|consensus
Probab=95.11 E-value=0.0083 Score=51.63 Aligned_cols=104 Identities=16% Similarity=0.279 Sum_probs=64.3
Q ss_pred cEEEEEecCCChhhhcCCCCCCCeEEEECCE-ecCCCCh---------HHHHHHHHcC--CCeEEEEEEeCC---CcCcc
Q psy14174 159 KIVVARVMHGGAADRSGLIHVGDEVCEVNGI-NVEGKTP---------GDVLKILQSS--EGTITFKLIPAD---NKLGY 223 (269)
Q Consensus 159 ~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~-~v~~~~~---------~~~~~~l~~~--~~~v~l~v~p~~---~~~~~ 223 (269)
|-++.++..-+|-+-+|..+-+|.|...+++ +-.+... ++.+..-+.. ..+....+.... .....
T Consensus 80 G~fl~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa~~k~~lw~skfnslnplv~Y~rt~s~~r~~qi~l~d~~~~~~~~~~ 159 (222)
T KOG3601|consen 80 GDFLIRLSESSPGDFSGSVRFPDGVQHFKVVRPAFGKYFLWSSKFNSLNPLVSYHRTASQSRNQQIFLRDMEPPPAPLPP 159 (222)
T ss_pred chhhhhhhhcCcccccccccCCCCceeccccccCccccccchhhccCCCCCcccCcccccccceeeeecccccccccCCC
Confidence 5667777777888888888888888877776 2222211 1111111111 111111111111 11233
Q ss_pred cccceeeeeecccCCCCCCCCCCCCCccccCCCCEEEEEeCCCCCC
Q psy14174 224 RESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269 (269)
Q Consensus 224 ~~~~~~vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d~~W 269 (269)
.....|++|+|++.|.. ...+.|++||+.+|++++|++|
T Consensus 160 ~~~~~yqQa~~df~~~p-------p~ql~f~~gq~~~v~~~ss~~w 198 (222)
T KOG3601|consen 160 APTNYYQQALYDFQPQP-------PGQLAFRRGQQIQVLDSSSPFW 198 (222)
T ss_pred CccchhhhhcCCCCCCC-------chhhccccCCcceeecCCCcch
Confidence 46678999999988766 4468999999999999999999
No 77
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=94.34 E-value=0.28 Score=44.95 Aligned_cols=56 Identities=16% Similarity=0.325 Sum_probs=48.1
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHc--CCCeEEEEEEeC
Q psy14174 158 GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQS--SEGTITFKLIPA 217 (269)
Q Consensus 158 ~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~--~~~~v~l~v~p~ 217 (269)
.|+|+..+..++++. |.|+.||.|.+|||.++ .+.++....+++ .|..|+++..+.
T Consensus 130 ~gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f--~s~~e~i~~v~~~k~Gd~VtI~~~r~ 187 (342)
T COG3480 130 AGVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPF--TSSDELIDYVSSKKPGDEVTIDYERH 187 (342)
T ss_pred eeEEEEEccCCcchh--ceeccCCeEEeeCCeec--CCHHHHHHHHhccCCCCeEEEEEEec
Confidence 489999999999974 77899999999999999 466788888865 689999999864
No 78
>KOG4225|consensus
Probab=94.26 E-value=0.036 Score=52.45 Aligned_cols=36 Identities=28% Similarity=0.643 Sum_probs=32.8
Q ss_pred ceeeeeecccCCCCCCCCCCCCCccccCCCCEEEEEeCCCCCC
Q psy14174 227 KIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269 (269)
Q Consensus 227 ~~~vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d~~W 269 (269)
.+.+||+|.|.|+. +..|.|+.|||+.|+.+.|+.|
T Consensus 432 ~l~yrAly~Y~pqn-------edeLEl~egDii~VmeKcddgW 467 (489)
T KOG4225|consen 432 PLKYRALYSYRPQN-------EDELELREGDIIDVMEKCDDGW 467 (489)
T ss_pred cccceeccccCCCC-------chhheeccCCEEeeeecccCcc
Confidence 35589999999988 7789999999999999999999
No 79
>KOG1320|consensus
Probab=94.18 E-value=0.18 Score=48.82 Aligned_cols=56 Identities=20% Similarity=0.372 Sum_probs=46.0
Q ss_pred cEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCC--CeEEEEEEeC
Q psy14174 159 KIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSE--GTITFKLIPA 217 (269)
Q Consensus 159 ~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~--~~v~l~v~p~ 217 (269)
+++|+.|.+|+++...+ +..||+|..|||++|.+. .++..+++.+. ++|.+...+.
T Consensus 399 ~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~--~~l~~~i~~~~~~~~v~vl~~~~ 456 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNL--KHLYELIEECSTEDKVAVLDRRS 456 (473)
T ss_pred EEEEEEeccCCCccccc-ccCCCEEEEECCEEeech--HHHHHHHHhcCcCceEEEEEecC
Confidence 68899999999999999 599999999999999765 46788887665 4666666654
No 80
>KOG4407|consensus
Probab=92.18 E-value=0.15 Score=54.28 Aligned_cols=82 Identities=17% Similarity=0.109 Sum_probs=63.4
Q ss_pred eEEEEEeeCCCCCCeEEecc-----C---------------------CCCcEEEEEecCCChhhhcCCCCCCCeEEEECC
Q psy14174 135 VKIVQLVKSNEPLGATIKTD-----E---------------------ESGKIVVARVMHGGAADRSGLIHVGDEVCEVNG 188 (269)
Q Consensus 135 ~r~V~l~k~~~~lG~ti~~~-----~---------------------~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG 188 (269)
.++|.+.|.+.||||+++-. + -..-+++..+..++++..+| +..||.|..|||
T Consensus 47 ~~~V~~rR~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG-~~s~~~v~~itG 125 (1973)
T KOG4407|consen 47 KLIVIRRRPNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSG-SSSSVGVAGITG 125 (1973)
T ss_pred ceEEEEecCCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccC-cccccceeeecc
Confidence 36677777999999999763 0 01145677889999999999 599999999999
Q ss_pred EecCCCChHHHHHHHHcCCCeEEEEEEeCC
Q psy14174 189 INVEGKTPGDVLKILQSSEGTITFKLIPAD 218 (269)
Q Consensus 189 ~~v~~~~~~~~~~~l~~~~~~v~l~v~p~~ 218 (269)
..+.+.+ ......++.......+.|.+.+
T Consensus 126 ~e~~~~T-S~~~~~vk~~eT~~~~eV~~n~ 154 (1973)
T KOG4407|consen 126 LEPTSPT-SLPPYQVKAMETIFIKEVQANG 154 (1973)
T ss_pred cccCCCc-cccHHHHhhhhhhhhhhhccCC
Confidence 9999888 6666667666666677777654
No 81
>KOG1421|consensus
Probab=91.44 E-value=0.65 Score=46.69 Aligned_cols=57 Identities=21% Similarity=0.351 Sum_probs=46.0
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHH-cCCCeEEEEEEeCC
Q psy14174 158 GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQ-SSEGTITFKLIPAD 218 (269)
Q Consensus 158 ~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~-~~~~~v~l~v~p~~ 218 (269)
+-++|..|.++|+|++. |.+||.++.||+..+. ...++.++|- ..+..+.|+|.+.+
T Consensus 303 gmLvV~~vL~~gpa~k~--Le~GDillavN~t~l~--df~~l~~iLDegvgk~l~LtI~Rgg 360 (955)
T KOG1421|consen 303 GMLVVETVLPEGPAEKK--LEPGDILLAVNSTCLN--DFEALEQILDEGVGKNLELTIQRGG 360 (955)
T ss_pred eeEEEEEeccCCchhhc--cCCCcEEEEEcceehH--HHHHHHHHHhhccCceEEEEEEeCC
Confidence 45778999999999874 7999999999987773 4556667774 46888999999875
No 82
>KOG4371|consensus
Probab=91.16 E-value=0.43 Score=49.84 Aligned_cols=80 Identities=29% Similarity=0.443 Sum_probs=65.4
Q ss_pred eEEEEEeeCCCCCCeEEeccCCCCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeEEEEE
Q psy14174 135 VKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214 (269)
Q Consensus 135 ~r~V~l~k~~~~lG~ti~~~~~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~l~v 214 (269)
+..+.+-|+...||..+..- .+.+.|+.....+...+-. |++||.++-+||+-+.+.-|.+++.+++..+..|.+.|
T Consensus 1148 ~i~~~~~r~~~~l~~~~a~~--~~~~~~~~~~~~~~~~~pd-~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~ 1224 (1332)
T KOG4371|consen 1148 VIDVELDRNEGSLGVQIASL--SGRVCIKQLTSEPAISHPD-IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGV 1224 (1332)
T ss_pred cccccCCCCCCCCCceeccC--ccceehhhcccCCCCCCCC-cchhhhhhhccceeeechhhHHHHHHHhccCceEEEEe
Confidence 44456667668899988765 4466677777666666666 79999999999999999999999999999999999998
Q ss_pred EeC
Q psy14174 215 IPA 217 (269)
Q Consensus 215 ~p~ 217 (269)
.+.
T Consensus 1225 ~r~ 1227 (1332)
T KOG4371|consen 1225 QRP 1227 (1332)
T ss_pred ecC
Confidence 764
No 83
>PF12812 PDZ_1: PDZ-like domain
Probab=91.09 E-value=0.72 Score=33.63 Aligned_cols=47 Identities=26% Similarity=0.245 Sum_probs=36.9
Q ss_pred cEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCC
Q psy14174 159 KIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEG 208 (269)
Q Consensus 159 ~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~ 208 (269)
++++.....|+++...| +..|-.|.+|||+++ .+.++.++.+++..+
T Consensus 31 ~gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt--~~Ld~f~~vvk~ipd 77 (78)
T PF12812_consen 31 GGVYVAVSGGSLAFAGG-ISKGFIITSVNGKPT--PDLDDFIKVVKKIPD 77 (78)
T ss_pred CEEEEEecCCChhhhCC-CCCCeEEEeECCcCC--cCHHHHHHHHHhCCC
Confidence 34455557888888777 799999999999999 466788888887653
No 84
>KOG4371|consensus
Probab=90.31 E-value=0.35 Score=50.53 Aligned_cols=82 Identities=26% Similarity=0.450 Sum_probs=66.8
Q ss_pred eEEEEEee-CCCCCCeEEeccCCCCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeEEEE
Q psy14174 135 VKIVQLVK-SNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFK 213 (269)
Q Consensus 135 ~r~V~l~k-~~~~lG~ti~~~~~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~l~ 213 (269)
.+.|.+.| ...++|+.+......++++|..+...+.|..-|.+++||++...+|.++.+.++.+....++-..+.+.++
T Consensus 1246 l~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~~ 1325 (1332)
T KOG4371|consen 1246 LISVMLLKKPMATLGLSLAKRTMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQIT 1325 (1332)
T ss_pred hhhheeeecccccccccccccCcCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchhhe
Confidence 34445555 77789998877666789999999999999999999999999999999999999888888777556666666
Q ss_pred EEe
Q psy14174 214 LIP 216 (269)
Q Consensus 214 v~p 216 (269)
+.+
T Consensus 1326 ~~~ 1328 (1332)
T KOG4371|consen 1326 VTR 1328 (1332)
T ss_pred ehh
Confidence 544
No 85
>KOG4226|consensus
Probab=89.92 E-value=0.23 Score=44.57 Aligned_cols=33 Identities=39% Similarity=0.779 Sum_probs=27.7
Q ss_pred eeeecccCCCCCCCCCCCCCccccCCCCEEEEEe--CCCCCC
Q psy14174 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVS--QDDAYW 269 (269)
Q Consensus 230 vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~--~~d~~W 269 (269)
|-|++.++... +..|+|.+||.|.||+ ..||.|
T Consensus 194 VvaLYsFsssn-------deELsFeKGerleivd~Pe~DPdW 228 (379)
T KOG4226|consen 194 VVALYSFSSSN-------DEELSFEKGERLEIVDKPENDPDW 228 (379)
T ss_pred EEEEecccCCC-------hhhcccccCceeEeccCCCCCchH
Confidence 56788888777 4579999999999998 678888
No 86
>KOG2856|consensus
Probab=88.68 E-value=0.18 Score=47.00 Aligned_cols=33 Identities=39% Similarity=0.703 Sum_probs=28.6
Q ss_pred eeeeeecccCCCCCCCCCCCCCccccCCCCEEEEEeCCCC
Q psy14174 228 IRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDA 267 (269)
Q Consensus 228 ~~vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d~ 267 (269)
+.|||++||.+.+ ...|+|+.||.|..+...|.
T Consensus 415 v~vraLYDY~gqE-------~DElsfkaGd~l~kl~eeDe 447 (472)
T KOG2856|consen 415 VRVRALYDYAGQE-------GDELSFKAGDELEKLEEEDE 447 (472)
T ss_pred eeEEeeeccCccc-------ccchhhccccHhhhcCCccc
Confidence 7899999999987 45799999999999976663
No 87
>KOG3632|consensus
Probab=86.11 E-value=0.68 Score=48.21 Aligned_cols=35 Identities=40% Similarity=0.681 Sum_probs=26.9
Q ss_pred eeeecccCCCCCCCCCCCCCc---cccCCCCEEEEEeCCC
Q psy14174 230 VRAHFDYDASSDPYIPCKDAG---LSFNKGDILHVVSQDD 266 (269)
Q Consensus 230 vRa~fdy~p~~D~~ipc~e~g---L~F~~GDIL~vv~~~d 266 (269)
+-|+|||||-. +-|..+|+ |+|+.|+||.|....|
T Consensus 1141 fVAlfDYDpl~--MSpNpDAaEeELpFregqIikV~GDkD 1178 (1335)
T KOG3632|consen 1141 FVALFDYDPLQ--MSPNPDAAEEELPFREGQIIKVLGDKD 1178 (1335)
T ss_pred eEeeeccCccc--cCCCCChhhhccccccCcEEEEecccc
Confidence 34999999976 45555554 9999999999996444
No 88
>KOG0162|consensus
Probab=85.45 E-value=1 Score=45.71 Aligned_cols=35 Identities=34% Similarity=0.644 Sum_probs=30.2
Q ss_pred eeeeeecccCCCCCCCCCCCCCccccCCCCEEEEEeCCCCCC
Q psy14174 228 IRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269 (269)
Q Consensus 228 ~~vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d~~W 269 (269)
...+|+++|.+++ ...|+|++|||+.|+..+-.-|
T Consensus 1052 p~~~A~Y~y~gq~-------~dEls~~~~diIei~~edpSGW 1086 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQD-------VDELSFKKGDIIEIMREDPSGW 1086 (1106)
T ss_pred cceeeeccCCCCC-------cccccccCCCEEEEeccCCCcc
Confidence 5678999999884 4489999999999999888777
No 89
>KOG4407|consensus
Probab=84.80 E-value=0.44 Score=50.90 Aligned_cols=60 Identities=20% Similarity=0.445 Sum_probs=55.4
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeEEEEEEeCC
Q psy14174 158 GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPAD 218 (269)
Q Consensus 158 ~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~l~v~p~~ 218 (269)
.-+||..|++.|+|+-+. |+-||+++.||..++.++...+++.++++....+++.+.|..
T Consensus 143 eT~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P~~ 202 (1973)
T KOG4407|consen 143 ETIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVPKE 202 (1973)
T ss_pred hhhhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccCCCCCCceecccc
Confidence 478999999999999999 599999999999999999999999999998888888888863
No 90
>KOG3834|consensus
Probab=83.40 E-value=2.2 Score=40.66 Aligned_cols=60 Identities=18% Similarity=0.315 Sum_probs=51.0
Q ss_pred CCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeEEEEEEeC
Q psy14174 157 SGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPA 217 (269)
Q Consensus 157 ~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~l~v~p~ 217 (269)
..+.-|-+|..+++|+++|+.---|.|++|||..+. ...+....+++.....|++++...
T Consensus 14 teg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~-~dnd~Lk~llk~~sekVkltv~n~ 73 (462)
T KOG3834|consen 14 TEGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLN-KDNDTLKALLKANSEKVKLTVYNS 73 (462)
T ss_pred ceeEEEEEeecCChHHhcCcchhhhhhheeCccccc-CchHHHHHHHHhcccceEEEEEec
Confidence 457889999999999999988889999999999995 556788888887777799998764
No 91
>KOG3875|consensus
Probab=79.60 E-value=0.45 Score=43.44 Aligned_cols=33 Identities=36% Similarity=0.570 Sum_probs=28.8
Q ss_pred eeeeeecccCCCCCCCCCCCCCccccCCCCEEEEEeCCCC
Q psy14174 228 IRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDA 267 (269)
Q Consensus 228 ~~vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d~ 267 (269)
.+-||.||+-+.. +-.|+|++||+|+|..++|.
T Consensus 269 ~~arA~YdF~a~n-------p~ElSlk~Gdml~ia~K~dq 301 (362)
T KOG3875|consen 269 EFARALYDFVARN-------PVELSLKKGDMLAIASKEDQ 301 (362)
T ss_pred HHHHHHhhhhcCC-------HHHhhhhcCchhhccccccc
Confidence 6789999998887 56899999999999998874
No 92
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=77.18 E-value=4.4 Score=34.45 Aligned_cols=38 Identities=34% Similarity=0.594 Sum_probs=32.0
Q ss_pred CCCeEEeccCCCCcEEEEEecCCChhhhcCCCCCCCeEEEE
Q psy14174 146 PLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEV 186 (269)
Q Consensus 146 ~lG~ti~~~~~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~V 186 (269)
..|+++... ++.+.|..|..||+|+++| +.-|.+|.+|
T Consensus 112 ~~GL~l~~e--~~~~~Vd~v~fgS~A~~~g-~d~d~~I~~v 149 (183)
T PF11874_consen 112 AAGLTLMEE--GGKVIVDEVEFGSPAEKAG-IDFDWEITEV 149 (183)
T ss_pred hCCCEEEee--CCEEEEEecCCCCHHHHcC-CCCCcEEEEE
Confidence 358888765 5689999999999999999 5899988776
No 93
>KOG3812|consensus
Probab=75.55 E-value=2.6 Score=39.13 Aligned_cols=46 Identities=28% Similarity=0.537 Sum_probs=38.5
Q ss_pred cccceeeeeecccCCCCCCCCCCCCCccccCCCCEEEEEeCCCCCC
Q psy14174 224 RESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269 (269)
Q Consensus 224 ~~~~~~vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d~~W 269 (269)
++-.|-||+..+|++.-|.-.|.+.-+++|..-|-|||--+=...|
T Consensus 55 KpVAFAV~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDW 100 (475)
T KOG3812|consen 55 KPVAFAVRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDW 100 (475)
T ss_pred CCceEEEEeccccCCccCCCCCCCCceeeeccccceeehhhcccch
Confidence 3445788999999999999999999999999999999976544444
No 94
>KOG0792|consensus
Probab=75.45 E-value=1.6 Score=45.95 Aligned_cols=65 Identities=23% Similarity=0.384 Sum_probs=53.5
Q ss_pred CCCCCeEEeccCC------CCcEEEEEec-------------CCChhhhc-CCCCCCCeEEEECCEecCCCChHHHHHHH
Q psy14174 144 NEPLGATIKTDEE------SGKIVVARVM-------------HGGAADRS-GLIHVGDEVCEVNGINVEGKTPGDVLKIL 203 (269)
Q Consensus 144 ~~~lG~ti~~~~~------~~~i~V~~V~-------------~gg~A~r~-GlL~~GD~Il~VNG~~v~~~~~~~~~~~l 203 (269)
.+.+||.+.|+.+ ..+..++|+. ++++|+.. -++..||+++.|||..+....|++.+.++
T Consensus 715 ~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~i 794 (1144)
T KOG0792|consen 715 PGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLI 794 (1144)
T ss_pred CccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHHH
Confidence 5679999999832 1377788888 88888665 45689999999999999999999999999
Q ss_pred HcCCC
Q psy14174 204 QSSEG 208 (269)
Q Consensus 204 ~~~~~ 208 (269)
++...
T Consensus 795 rs~r~ 799 (1144)
T KOG0792|consen 795 RSPRE 799 (1144)
T ss_pred hhhhh
Confidence 87654
No 95
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=73.63 E-value=8.9 Score=35.61 Aligned_cols=52 Identities=29% Similarity=0.420 Sum_probs=38.3
Q ss_pred EEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcC-CCe---EEEEEEe
Q psy14174 162 VARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSS-EGT---ITFKLIP 216 (269)
Q Consensus 162 V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~-~~~---v~l~v~p 216 (269)
+..+..+++|..+| ++.||+|+++|+..+.. .+++...+... +.. +.+.+.+
T Consensus 133 ~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 133 VGEVAPKSAAALAG-LRPGDRIVAVDGEKVAS--WDDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeecCCCCHHHHcC-CCCCCEEEeECCEEccC--HHHHHHHHHhccCCcccceEEEEEe
Confidence 44788999999999 69999999999999954 44555555443 333 4556666
No 96
>KOG2546|consensus
Probab=73.56 E-value=2.4 Score=40.41 Aligned_cols=33 Identities=45% Similarity=0.764 Sum_probs=29.5
Q ss_pred eeeecccCCCCCCCCCCCCCccccCCCCEEEEEeCCCCCC
Q psy14174 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269 (269)
Q Consensus 230 vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d~~W 269 (269)
|++.+||+... +.+|+|+.|-||.|+.++|.-|
T Consensus 426 Vv~iydy~~~K-------ddeLsf~E~ailyv~kknddgw 458 (483)
T KOG2546|consen 426 VVAIYDYTADK-------DDELSFAEGAILYVLKKNDDGW 458 (483)
T ss_pred HHhhccccccc-------ccccccccccEEEEEEecCCcc
Confidence 77888888877 6789999999999999999988
No 97
>KOG4348|consensus
Probab=73.17 E-value=2.9 Score=40.06 Aligned_cols=37 Identities=35% Similarity=0.695 Sum_probs=30.0
Q ss_pred cceeeeeecccCCCCCCCCCCCCCccccCCCCEEEEEeC--CCCCC
Q psy14174 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQ--DDAYW 269 (269)
Q Consensus 226 ~~~~vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~--~d~~W 269 (269)
..-|-|..|-|+++. +..|.|+.||||+.|++ .|..|
T Consensus 260 tKeycrv~F~Ye~qn-------dDELt~KEgdil~lItK~cgdaGW 298 (627)
T KOG4348|consen 260 TKEYCRVKFVYEPQN-------DDELTLKEGDILILITKNCGDAGW 298 (627)
T ss_pred hhhheeeeeeecCCC-------ccceeeccccEEEEecccccccce
Confidence 345889999999998 55789999999999974 35555
No 98
>KOG1421|consensus
Probab=71.58 E-value=13 Score=37.73 Aligned_cols=77 Identities=16% Similarity=0.117 Sum_probs=57.5
Q ss_pred CCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeEEEEEEeCCCcCcccccceeeeeeccc
Q psy14174 157 SGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPADNKLGYRESKIRVRAHFDY 236 (269)
Q Consensus 157 ~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~l~v~p~~~~~~~~~~~~~vRa~fdy 236 (269)
..|+|+.....|+||.+ + |+.-.-|..|||+.. .+.++.+.+++.....--.++..... ...+..+.+|...-|
T Consensus 861 p~gvyvt~rg~gspalq-~-l~aa~fitavng~~t--~~lddf~~~~~~ipdnsyv~v~~mtf--d~vp~~~s~k~n~hy 934 (955)
T KOG1421|consen 861 PEGVYVTSRGYGSPALQ-M-LRAAHFITAVNGHDT--NTLDDFYHMLLEIPDNSYVQVKQMTF--DGVPSIVSVKPNPHY 934 (955)
T ss_pred CCceEEeecccCChhHh-h-cchheeEEEeccccc--CcHHHHHHHHhhCCCCceEEEEEecc--CCCceEEEeccCCcc
Confidence 35999999999999998 6 699999999999988 67889999999877666656554321 113334556666666
Q ss_pred CCC
Q psy14174 237 DAS 239 (269)
Q Consensus 237 ~p~ 239 (269)
-|.
T Consensus 935 fpt 937 (955)
T KOG1421|consen 935 FPT 937 (955)
T ss_pred Cce
Confidence 654
No 99
>KOG1843|consensus
Probab=71.31 E-value=3.7 Score=38.95 Aligned_cols=32 Identities=28% Similarity=0.593 Sum_probs=25.7
Q ss_pred eeeeecccCCCCCCCCCCCCCccccCCCCEEEEEeCCCC
Q psy14174 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDA 267 (269)
Q Consensus 229 ~vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d~ 267 (269)
.+.|+++++.+. ...|+|++||||.|+++.|.
T Consensus 418 ~a~a~ysfage~-------~GDl~f~kgDii~il~ks~s 449 (473)
T KOG1843|consen 418 IATALYSFAGEQ-------PGDLSFQKGDIITILKKSDS 449 (473)
T ss_pred eeeeeehhccCC-------CCCcccccCceEEEecCCcc
Confidence 466777777766 55699999999999998773
No 100
>KOG3834|consensus
Probab=70.61 E-value=27 Score=33.52 Aligned_cols=83 Identities=19% Similarity=0.285 Sum_probs=56.5
Q ss_pred CCCceEEEEEee-CCCC---CCeEEeccCCCC----cEEEEEecCCChhhhcCCCCCCCeEEEE-CCEecCCCChHHHHH
Q psy14174 131 EEETVKIVQLVK-SNEP---LGATIKTDEESG----KIVVARVMHGGAADRSGLIHVGDEVCEV-NGINVEGKTPGDVLK 201 (269)
Q Consensus 131 ~~~~~r~V~l~k-~~~~---lG~ti~~~~~~~----~i~V~~V~~gg~A~r~GlL~~GD~Il~V-NG~~v~~~~~~~~~~ 201 (269)
....+|+|.+.. +..+ ||++|+-....+ -+-|-+|.+.+||+++|+..-+|-|+-+ +.+ ....++...
T Consensus 74 kt~~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~---~~~~eDl~~ 150 (462)
T KOG3834|consen 74 KTQEVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAV---MHEEEDLFT 150 (462)
T ss_pred ccceeEEEEecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhh---ccchHHHHH
Confidence 345678888877 5555 999998654322 3458899999999999976689999866 443 234456666
Q ss_pred HHHc-CCCeEEEEEEe
Q psy14174 202 ILQS-SEGTITFKLIP 216 (269)
Q Consensus 202 ~l~~-~~~~v~l~v~p 216 (269)
+|.. .+..+.+.|.-
T Consensus 151 lIeshe~kpLklyVYN 166 (462)
T KOG3834|consen 151 LIESHEGKPLKLYVYN 166 (462)
T ss_pred HHHhccCCCcceeEee
Confidence 6654 34556666543
No 101
>KOG2857|consensus
Probab=67.11 E-value=4.3 Score=32.92 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=30.3
Q ss_pred HHhHHHHHHHHhhccCCChhHHHHHHhccCchhhhhhhhccccc
Q psy14174 69 MQISLEVLDVLLSRLALNDDCKELFVLLQRPNLQGLLCAHDAVA 112 (269)
Q Consensus 69 ~~~~~~v~~~l~~~~~~~~~~~el~~ll~~p~~~~ll~a~d~v~ 112 (269)
..-+.+.+..++... .++..||.++|.+||++.|+...|...
T Consensus 69 ~de~ndrV~~~~~ka--l~ssseLrsll~dp~Lr~Li~sid~~~ 110 (157)
T KOG2857|consen 69 VDEVNDRVPSLALKA--LPSSSELRSLLEDPHLRNLIESIDELL 110 (157)
T ss_pred chhhcccchHHHHHh--ccchHHHHHHHhCHHHHHHHHHHHHHh
Confidence 344445554444333 567889999999999999999988653
No 102
>KOG0515|consensus
Probab=62.96 E-value=7.3 Score=38.36 Aligned_cols=31 Identities=45% Similarity=0.736 Sum_probs=26.6
Q ss_pred eeeecccCCCCCCCCCCCCCccccCCCCEEEEEeCCCC
Q psy14174 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDA 267 (269)
Q Consensus 230 vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d~ 267 (269)
|-|++||.+.- +..|+|+.||-|.|+-++|+
T Consensus 686 vYAlwdYeaqf-------~DELsf~eGd~lTvirr~d~ 716 (752)
T KOG0515|consen 686 VYALWDYEAQF-------EDELSFDEGDELTVIRRDDE 716 (752)
T ss_pred eEEeecccccc-------cccccccCCceeEEEecCCc
Confidence 66999999987 55799999999999987664
No 103
>KOG1702|consensus
Probab=61.48 E-value=5.9 Score=34.28 Aligned_cols=35 Identities=34% Similarity=0.567 Sum_probs=28.5
Q ss_pred eeeeeecccCCCCCCCCCCCCCccccCCCCEEEEEeCCCCCC
Q psy14174 228 IRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269 (269)
Q Consensus 228 ~~vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d~~W 269 (269)
-..||.|||.... +..++|.-||-+.-|-.-|..|
T Consensus 208 ktyra~ydysaqd-------edevsF~dgd~ivnvq~iddGW 242 (264)
T KOG1702|consen 208 KTYRAFYDYSAQD-------EDEVSFVDGDYIVNVQSIDDGW 242 (264)
T ss_pred ccchhhccCcccC-------cceeEEecCCeEEEEEeccCCc
Confidence 4569999999877 6689999999877776666668
No 104
>KOG2921|consensus
Probab=54.13 E-value=25 Score=33.56 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=35.3
Q ss_pred CCcEEEEEecCCChhhhc-CCCCCCCeEEEECCEecCCCChHHHHHHHHc
Q psy14174 157 SGKIVVARVMHGGAADRS-GLIHVGDEVCEVNGINVEGKTPGDVLKILQS 205 (269)
Q Consensus 157 ~~~i~V~~V~~gg~A~r~-GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~ 205 (269)
+.++.|..|...||+--- | |.+||+|.++||.+|. +.++..+.++.
T Consensus 219 g~gV~Vtev~~~Spl~gprG-L~vgdvitsldgcpV~--~v~dW~ecl~t 265 (484)
T KOG2921|consen 219 GEGVTVTEVPSVSPLFGPRG-LSVGDVITSLDGCPVH--KVSDWLECLAT 265 (484)
T ss_pred CceEEEEeccccCCCcCccc-CCccceEEecCCcccC--CHHHHHHHHHh
Confidence 347888888888887332 7 6999999999999995 45677777654
No 105
>KOG1703|consensus
Probab=52.70 E-value=12 Score=36.41 Aligned_cols=71 Identities=21% Similarity=0.332 Sum_probs=58.5
Q ss_pred CCCeEEeccCCCCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeEEEEEEeC
Q psy14174 146 PLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPA 217 (269)
Q Consensus 146 ~lG~ti~~~~~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~l~v~p~ 217 (269)
++||.+.++....++-+.++.+++.+.... +..+|.+..++|..-..++|.+++.-.+..+....+.+.+.
T Consensus 9 ~~~~r~~~~~~~~~l~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 79 (479)
T KOG1703|consen 9 PWGFRLQGGDFLQPLRILRVTPGGKAADAE-LDPGDIIAAIDGENEETMTHLEAQNKIKGSGSQLALTLSRS 79 (479)
T ss_pred CceeeecccccccccceeccCCCCcccccc-ccccccccccccccccccccccccCcccccccccccccccc
Confidence 555554443223468899999999999999 59999999999999999999999999988998888887664
No 106
>KOG3632|consensus
Probab=49.69 E-value=13 Score=39.19 Aligned_cols=39 Identities=31% Similarity=0.389 Sum_probs=30.2
Q ss_pred eeeeecccCCCCCCCCCCCCCccccCCCCEEEEEeCCCC
Q psy14174 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDA 267 (269)
Q Consensus 229 ~vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d~ 267 (269)
.+-|.|||+|..-..----++.|.|..|||+.|....|+
T Consensus 1246 ~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdd 1284 (1335)
T KOG3632|consen 1246 QMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDD 1284 (1335)
T ss_pred hhhhhhcCCcccCCCCcccceeeccccCCeEEeeccccC
Confidence 355899999987555444567899999999999976553
No 107
>KOG1945|consensus
Probab=49.38 E-value=9.8 Score=35.52 Aligned_cols=79 Identities=27% Similarity=0.265 Sum_probs=62.6
Q ss_pred EEEeeCCCCCCeEEeccC-------CCCcEEEEEecCCChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeE
Q psy14174 138 VQLVKSNEPLGATIKTDE-------ESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTI 210 (269)
Q Consensus 138 V~l~k~~~~lG~ti~~~~-------~~~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v 210 (269)
+-+.++..++|+++.+-. ...++++....+|+.-+|.|...+-|.+..+.+....++....+.+..+.+...+
T Consensus 103 ~av~~~~~g~g~~~~~~~~gkk~~~~e~~~~~~sa~sg~~~~r~g~~sved~~~s~~~k~lp~vp~s~~~es~g~S~~~~ 182 (377)
T KOG1945|consen 103 VAVEKGAEGLGVSIIGMGVGKKSGLEELGIFVKSATSGGAVHRDGRWSVEDVEVSVDSKSLPGVPFSWFAESLGGSSSRV 182 (377)
T ss_pred hhccCCcCCCCccccccccchhccchhhcceeecccccccccccccccccccccccccCCCCCcchhhhhcccccchhcc
Confidence 455667777887776521 1238999999999999999999999999999999888888888888888777777
Q ss_pred EEEEEe
Q psy14174 211 TFKLIP 216 (269)
Q Consensus 211 ~l~v~p 216 (269)
+++...
T Consensus 183 n~~s~~ 188 (377)
T KOG1945|consen 183 NFTSPT 188 (377)
T ss_pred CCcccc
Confidence 776544
No 108
>PF09058 L27_1: L27_1; InterPro: IPR015143 The L27 domain is a protein interaction module that exists in a large family of scaffold proteins, functioning as an organisation centre of large protein assemblies required for the establishment and maintenance of cell polarity. L27 domains form specific heterotetrameric complexes, in which each domain contains three alpha-helices []. ; PDB: 3LRA_A 1RSO_A.
Probab=46.86 E-value=48 Score=23.25 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHhhcccccC-h----hhHHHHHHHhcChhHHHHHhhhhccc
Q psy14174 12 SVSSLLETLQESQSTFSAN-D----EELLFLSSLLQSKELNALVHVHNSIV 57 (269)
Q Consensus 12 ~~~~vL~~L~~~~~~~~~~-~----~d~~~l~~~l~~~~~~~l~~~~~~~~ 57 (269)
.-.+.|.-|++-+...... + ..+.=+-++|+|.-|++|+.+++-.+
T Consensus 7 dA~rALelLe~y~~~L~~~~D~~lr~~ierli~ifkS~LF~ALLDIqe~YE 57 (64)
T PF09058_consen 7 DAHRALELLEEYHNKLSRPEDEELRTAIERLINIFKSRLFQALLDIQEFYE 57 (64)
T ss_dssp HHHHHHHHHHHHHHTTSSSS-CCHHHHHHHHHHHHHSHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788776644222 2 34778889999999999999987443
No 109
>KOG4348|consensus
Probab=45.70 E-value=4.8 Score=38.58 Aligned_cols=34 Identities=26% Similarity=0.569 Sum_probs=26.4
Q ss_pred eeeeecccCCCCCCCCCCCCCccccCCCCEEEEEeCCCCCC
Q psy14174 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269 (269)
Q Consensus 229 ~vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d~~W 269 (269)
.-.+.|.|.|+. +..|.|+.|||+.|+..=.+.|
T Consensus 102 ~c~v~f~Y~pqn-------dDELelkVGDiIeli~eVEeGW 135 (627)
T KOG4348|consen 102 ICVVTFAYSPQN-------DDELELKVGDIIELISEVEEGW 135 (627)
T ss_pred eEEEEEeecCCC-------CceeeeeeccHHHhhhHhhhhh
Confidence 345789999988 5579999999999997544445
No 110
>KOG3771|consensus
Probab=41.71 E-value=28 Score=33.69 Aligned_cols=35 Identities=34% Similarity=0.572 Sum_probs=27.5
Q ss_pred ccceeeeeecccCCCCCCCCCCCCCccccCCCCEEEEEeCCC
Q psy14174 225 ESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDD 266 (269)
Q Consensus 225 ~~~~~vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d 266 (269)
....+|.+..||.... ...|+|+.||+|.||-.++
T Consensus 398 ~~~~~v~a~~dy~a~~-------~deLsf~~gd~i~vi~s~~ 432 (460)
T KOG3771|consen 398 GFLYKVKALHDYAAQD-------TDELSFEAGDVILVIPSDN 432 (460)
T ss_pred CCccceeccccccccc-------cccccccCCCEEEEecCCC
Confidence 3446799999998765 4469999999999997444
No 111
>KOG1029|consensus
Probab=41.30 E-value=17 Score=37.40 Aligned_cols=33 Identities=30% Similarity=0.708 Sum_probs=24.9
Q ss_pred eeeecccCCCCCCCCCCCCCccccCCCCEEEEEeCCCCCC
Q psy14174 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269 (269)
Q Consensus 230 vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d~~W 269 (269)
--|+|.|.... +..|+|.+||++.|+.+.+--|
T Consensus 816 ~iA~y~wrakk-------e~dLsFskgd~I~VlekqemwW 848 (1118)
T KOG1029|consen 816 AIALYPWRAKK-------ENDLSFSKGDTITVLEKQEMWW 848 (1118)
T ss_pred HHhhccccccc-------cccccccCCCeeeeehhcccee
Confidence 34555555554 5679999999999999887655
No 112
>PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis. It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A ....
Probab=40.88 E-value=41 Score=25.91 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHhhcccccChhhHHHHHHHhcChhHHH
Q psy14174 11 ISVSSLLETLQESQSTFSANDEELLFLSSLLQSKELNA 48 (269)
Q Consensus 11 ~~~~~vL~~L~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 48 (269)
.|+..+..+|.+..-. .-..++.||+.+|.+|.|++
T Consensus 63 ~Ai~~l~~AL~e~~I~--Gv~TNi~fl~~ll~~~~f~~ 98 (107)
T PF02785_consen 63 EAIARLRRALAETVIE--GVKTNIPFLRALLAHPEFRS 98 (107)
T ss_dssp HHHHHHHHHHHHHEEE--SSSHSHHHHHHHHTSHHHHT
T ss_pred HHHHHHHhhcceEEEE--CccCCHHHHHHHhCCccccc
Confidence 3788888888876432 35789999999999999985
No 113
>KOG2222|consensus
Probab=40.14 E-value=16 Score=35.71 Aligned_cols=34 Identities=32% Similarity=0.593 Sum_probs=27.1
Q ss_pred ceeeeeecccCCCCCCCCCCCCCccccCCCCEEEEEeCCCC
Q psy14174 227 KIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDA 267 (269)
Q Consensus 227 ~~~vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d~ 267 (269)
.-+.||+.|+.... +..|.|++.||+.|+++.|+
T Consensus 548 ~krakal~df~r~d-------ddelgfrkndiitiisekde 581 (848)
T KOG2222|consen 548 AKRAKALHDFARED-------DDELGFRKNDIITIISEKDE 581 (848)
T ss_pred hHHHHHHhhhhhcc-------ccccccccccEEEEeecCCc
Confidence 34567888888776 45788999999999997774
No 114
>KOG2996|consensus
Probab=40.12 E-value=30 Score=34.62 Aligned_cols=35 Identities=29% Similarity=0.503 Sum_probs=23.3
Q ss_pred eeeeecccCC-CCCCCCCCCCCccccCCCCEEEEEeC--CCCCC
Q psy14174 229 RVRAHFDYDA-SSDPYIPCKDAGLSFNKGDILHVVSQ--DDAYW 269 (269)
Q Consensus 229 ~vRa~fdy~p-~~D~~ipc~e~gL~F~~GDIL~vv~~--~d~~W 269 (269)
.-.|.-+||- ..|. .+|||+.|||+.|.++ .|..|
T Consensus 805 ~g~AvarYdf~ard~------~eLSlk~GDvV~i~~k~g~d~GW 842 (865)
T KOG2996|consen 805 VGTAVARYDFCARDM------RELSLKEGDVVKIYDKVGEDQGW 842 (865)
T ss_pred eeeeeeccccCCCch------hhcccccCCEEEEehhccccCce
Confidence 3456666763 3332 3799999999999983 34445
No 115
>KOG1264|consensus
Probab=39.72 E-value=20 Score=37.36 Aligned_cols=37 Identities=38% Similarity=0.725 Sum_probs=31.8
Q ss_pred cceeeeeecccCCCCCCCCCCCCCccccCCCCEEEEEeCCCCCC
Q psy14174 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269 (269)
Q Consensus 226 ~~~~vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d~~W 269 (269)
..+.+||+++|-... +..|+|-+|-|++.|.++..-|
T Consensus 773 ~~vt~kAL~~Yka~r-------~DELSFpk~aiItnv~keeg~w 809 (1267)
T KOG1264|consen 773 PQVTVKALYDYKAKR-------SDELSFPKGAIITNVSKEEGGW 809 (1267)
T ss_pred cchhhhhhhccccCC-------cccccccccceeEeeeccCCce
Confidence 357899999998876 5589999999999999888766
No 116
>PF04656 Pox_E6: Pox virus E6 protein; InterPro: IPR006749 This family contains fowlpox virus protein E6 and its homologues. The members of this family are functionally uncharacterised [].
Probab=37.20 E-value=13 Score=36.09 Aligned_cols=15 Identities=40% Similarity=0.953 Sum_probs=14.5
Q ss_pred CCCEEEEEeCCCCCC
Q psy14174 255 KGDILHVVSQDDAYW 269 (269)
Q Consensus 255 ~GDIL~vv~~~d~~W 269 (269)
+||||-|++..|++|
T Consensus 301 PGDILsIIDs~de~W 315 (566)
T PF04656_consen 301 PGDILSIIDSKDETW 315 (566)
T ss_pred CccceeeccccchhH
Confidence 799999999999999
No 117
>PHA03000 Hypothetical protein; Provisional
Probab=35.63 E-value=14 Score=35.80 Aligned_cols=15 Identities=40% Similarity=0.933 Sum_probs=14.5
Q ss_pred CCCEEEEEeCCCCCC
Q psy14174 255 KGDILHVVSQDDAYW 269 (269)
Q Consensus 255 ~GDIL~vv~~~d~~W 269 (269)
+||||-|++..|++|
T Consensus 301 PGDILsIIDs~de~W 315 (566)
T PHA03000 301 PGDILSIIDSKDEDW 315 (566)
T ss_pred CccceeeccccchhH
Confidence 799999999999999
No 118
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=31.82 E-value=94 Score=26.34 Aligned_cols=39 Identities=10% Similarity=0.345 Sum_probs=34.5
Q ss_pred CCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeEEEE
Q psy14174 175 GLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFK 213 (269)
Q Consensus 175 GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~l~ 213 (269)
|.+..||+++-|+.+-.+|-+..++.+++++.+..|.-.
T Consensus 117 g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v 155 (187)
T PRK13810 117 GDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYV 155 (187)
T ss_pred ccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEE
Confidence 556899999999999999999999999999999887433
No 119
>PRK03818 putative transporter; Validated
Probab=30.44 E-value=2.5e+02 Score=28.06 Aligned_cols=50 Identities=22% Similarity=0.316 Sum_probs=29.7
Q ss_pred EEEEEeeCCCCCCeEEeccC--CCCcEEEEEecCCChh---hhcCCCCCCCeEEEE
Q psy14174 136 KIVQLVKSNEPLGATIKTDE--ESGKIVVARVMHGGAA---DRSGLIHVGDEVCEV 186 (269)
Q Consensus 136 r~V~l~k~~~~lG~ti~~~~--~~~~i~V~~V~~gg~A---~r~GlL~~GD~Il~V 186 (269)
|.+++. +..-.|-++..-+ ...++.|.++.+++.. ...-.|+.||+++-+
T Consensus 207 r~~~V~-~s~liGkTv~el~~~~~~~v~V~~I~R~g~~~~p~~~~~L~~GDiLlV~ 261 (552)
T PRK03818 207 INIRVE-NPNLHGKAIKDVPILNGDKFVCSRLKRGDTLMVPSPDTIIQLGDLLHLV 261 (552)
T ss_pred EEEEEe-CCCCCCCcHHHHHhhhCCCEEEEEEEECCEEECCCCCCccCCCCEEEEE
Confidence 555555 3333477765432 2347888888877632 122347999998753
No 120
>KOG3655|consensus
Probab=27.47 E-value=35 Score=33.12 Aligned_cols=35 Identities=34% Similarity=0.655 Sum_probs=29.3
Q ss_pred eeeeeecccCCCCCCCCCCCCCccccCCCCEEEEEeCCCCCC
Q psy14174 228 IRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269 (269)
Q Consensus 228 ~~vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d~~W 269 (269)
-.-+|++||+..+ +-.++|-.+|++..|++-|.-|
T Consensus 428 q~A~A~~dyqAAd-------dtEisf~p~d~it~Id~vdegw 462 (484)
T KOG3655|consen 428 QTARALYDYQAAD-------DTEISFDPPDAITLIDQVDEGW 462 (484)
T ss_pred CCccccccccccC-------CcccccCCccccccccccCCcc
Confidence 3568899999888 4467889999999999988877
No 121
>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found []. PUA is a highly conserved RNA-binding motif found in a wide range of archaeal, bacterial and eukaryotic proteins, including enzymes that catalyse tRNA and rRNA post-transcriptional modifications, proteins involved in ribosome biogenesis and translation, as well as in enzymes involved in proline biosynthesis [, ]. The structures of several PUA-RNA complexes reveal a common RNA recognition surface, but also some versatility in the way in which the motif binds to RNA []. PUA motifs are involved in dyskeratosis congenita and cancer, pointing to links between RNA metabolism and human diseases [].; GO: 0003723 RNA binding; PDB: 1ZE2_A 1ZE1_A 1R3E_A 2AB4_A 3R90_D 2J5T_A 2J5V_B 1Q7H_A 2APO_A 2RFK_A ....
Probab=27.09 E-value=52 Score=23.17 Aligned_cols=15 Identities=40% Similarity=0.758 Sum_probs=11.1
Q ss_pred ccCCCCEEEEEeCCC
Q psy14174 252 SFNKGDILHVVSQDD 266 (269)
Q Consensus 252 ~F~~GDIL~vv~~~d 266 (269)
.|++||++.|++.++
T Consensus 30 ~f~~gd~V~i~~~~g 44 (74)
T PF01472_consen 30 DFRKGDEVAIVDEDG 44 (74)
T ss_dssp T--TTSEEEEEETTS
T ss_pred CcCCCCEEEEEcCCC
Confidence 489999999999864
No 122
>KOG3342|consensus
Probab=26.64 E-value=48 Score=27.47 Aligned_cols=14 Identities=29% Similarity=0.866 Sum_probs=11.8
Q ss_pred ccCCCCEEEEEeCC
Q psy14174 252 SFNKGDILHVVSQD 265 (269)
Q Consensus 252 ~F~~GDIL~vv~~~ 265 (269)
+|++||||-..|++
T Consensus 61 aF~RGDlLfL~N~~ 74 (180)
T KOG3342|consen 61 AFHRGDLLFLTNRN 74 (180)
T ss_pred ccccccEEEEecCC
Confidence 48999999998866
No 123
>PF10906 DUF2697: Protein of unknown function (DUF2697); InterPro: IPR020301 This entry contains proteins with no known function.
Probab=25.96 E-value=68 Score=22.77 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=22.9
Q ss_pred HHHHhcChhHHHHHh-hhhccccccCCCcc
Q psy14174 37 LSSLLQSKELNALVH-VHNSIVNEQSHPVL 65 (269)
Q Consensus 37 l~~~l~~~~~~~l~~-~~~~~~~~~~~p~~ 65 (269)
...||+||.|+..+. +|.+|+..+..|..
T Consensus 5 y~kLl~SpgFhrfVR~Ih~kVN~I~~~~~~ 34 (68)
T PF10906_consen 5 YRKLLDSPGFHRFVRRIHAKVNGIKYGPNP 34 (68)
T ss_pred HHHHHcChhHHHHHHHHHHHHhCCCCCCCC
Confidence 456899999999875 89999987655543
No 124
>KOG4825|consensus
Probab=25.85 E-value=1.4e+02 Score=29.14 Aligned_cols=73 Identities=10% Similarity=0.138 Sum_probs=50.5
Q ss_pred CcchhHHHHHHHHHHhhcccccChhhHHHHHHHhcChhHHHHHhhhhccccc---cCCCccCchHHhHHHHHHHHhhcc
Q psy14174 8 EFDISVSSLLETLQESQSTFSANDEELLFLSSLLQSKELNALVHVHNSIVNE---QSHPVLSNAMQISLEVLDVLLSRL 83 (269)
Q Consensus 8 ~~~~~~~~vL~~L~~~~~~~~~~~~d~~~l~~~l~~~~~~~l~~~~~~~~~~---~~~p~~~~~~~~~~~v~~~l~~~~ 83 (269)
-++..+++++..+++-.+...+ .+|+.+-+..- -.++.|.|.-+++.++ +-..|...-.+++.+.-+.+....
T Consensus 164 kqdkElaaiIgaidenKqeAVa-kEdfdlAKkak--lAiaDLkKsgeeleelEndKgcAVadEDfdlAkdkkdeiealR 239 (666)
T KOG4825|consen 164 KQDKELAAIIGAIDENKQEAVA-KEDFDLAKKAK--LAIADLKKSGEELEELENDKGCAVADEDFDLAKDKKDEIEALR 239 (666)
T ss_pred ccCHHHHHHHHHHHhhHHHHHh-hhhhhHHHHHH--HHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHHHH
Confidence 3455799999999987555444 56777666652 3456666777777665 666777777888888877776654
No 125
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=25.01 E-value=1.5e+02 Score=25.57 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=32.1
Q ss_pred CCCCCeEEEECCEecCCCChHHHHHHHHcCCCeEE
Q psy14174 177 IHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTIT 211 (269)
Q Consensus 177 L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~ 211 (269)
...|++++-|+.+-.+|.+..++++.++..|..|.
T Consensus 109 ~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~ 143 (201)
T COG0461 109 EVKGEKVVVVEDVITTGGSILEAVEALREAGAEVV 143 (201)
T ss_pred CCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEE
Confidence 45899999999999999999999999999998883
No 126
>KOG4773|consensus
Probab=24.16 E-value=14 Score=34.56 Aligned_cols=33 Identities=33% Similarity=0.737 Sum_probs=28.9
Q ss_pred eeeecccCCCCCCCCCCCCCccccCCCCEEEEEeCCCCCC
Q psy14174 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269 (269)
Q Consensus 230 vRa~fdy~p~~D~~ipc~e~gL~F~~GDIL~vv~~~d~~W 269 (269)
-+|.|||.+.. .+.|.|..|||..++.+++..|
T Consensus 178 ~~a~~df~gns-------~~EL~l~agdV~~~~~r~ek~W 210 (386)
T KOG4773|consen 178 AEASFDFPGNS-------KLELNLVAGDVEFLLSRDEKYW 210 (386)
T ss_pred HHhhccCCCCc-------cceeeeehhhHHHHHhhcccce
Confidence 46789998877 5678899999999999999999
No 127
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=23.95 E-value=3.8e+02 Score=26.75 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=31.0
Q ss_pred eEEEEEeeCCCCCCeEEeccC--CCCcEEEEEecCCChh---hhcCCCCCCCeEEEE
Q psy14174 135 VKIVQLVKSNEPLGATIKTDE--ESGKIVVARVMHGGAA---DRSGLIHVGDEVCEV 186 (269)
Q Consensus 135 ~r~V~l~k~~~~lG~ti~~~~--~~~~i~V~~V~~gg~A---~r~GlL~~GD~Il~V 186 (269)
.|.+++.++..-.|-++..-+ ...++.|.++.+++-. ...-.|++||+++-+
T Consensus 219 ~r~~~V~~~s~liGkTl~el~~~~~~~v~I~~I~R~g~~~~p~~dtvL~~GD~L~V~ 275 (562)
T TIGR03802 219 GRAYRVNRASSLIGKTVGDLENLFAGRVTIERIRRDGKLLTVSPDLVLNAGDVVLVV 275 (562)
T ss_pred eEEEEECCCcccCCCcHHHHHhhhCCCeEEEEEEECCEEEcCCCCCeeCCCCEEEEE
Confidence 455666555444577775532 1247888888776532 122347899988754
No 128
>COG3655 Predicted transcriptional regulator [Transcription]
Probab=23.28 E-value=38 Score=24.43 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=14.1
Q ss_pred ccccCCCCEEEEEeCCCC
Q psy14174 250 GLSFNKGDILHVVSQDDA 267 (269)
Q Consensus 250 gL~F~~GDIL~vv~~~d~ 267 (269)
.|..++||||..+..+|.
T Consensus 54 ~LeCqpgDiley~~d~~~ 71 (73)
T COG3655 54 ALECQPGDILEYVPDSDD 71 (73)
T ss_pred HcCCChhheeEEecCCcc
Confidence 677889999999866554
No 129
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=21.45 E-value=50 Score=30.66 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=28.5
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCeEEEECCEec
Q psy14174 158 GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINV 191 (269)
Q Consensus 158 ~~i~V~~V~~gg~A~r~GlL~~GD~Il~VNG~~v 191 (269)
.-+-+-||.+-++|+++|. -+||-|+-+|+-++
T Consensus 63 ~~l~~lrv~~~~~~e~~~~-~~~dyilg~n~Dp~ 95 (417)
T COG5233 63 CLLEVLRVNPESPAEKAGM-VVGDYILGINEDPL 95 (417)
T ss_pred hhhhheeccccChhHhhcc-ccceeEEeecCCcH
Confidence 3456889999999999995 89999999998766
No 130
>KOG0609|consensus
Probab=21.44 E-value=2.1e+02 Score=28.45 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=24.3
Q ss_pred hhhHHHHHHHhcChhHHHHHhhhhccc
Q psy14174 31 DEELLFLSSLLQSKELNALVHVHNSIV 57 (269)
Q Consensus 31 ~~d~~~l~~~l~~~~~~~l~~~~~~~~ 57 (269)
..+..-|..+|+.|.|++++.+|+.+.
T Consensus 74 ~~~~~eL~~iL~~ph~~~~l~ahd~va 100 (542)
T KOG0609|consen 74 SSEVQELRQLLNTPHLQALLQAHDTVA 100 (542)
T ss_pred ChhHHHHHHHhcchhHhHHHHHhHHHh
Confidence 456777999999999999999999998
No 131
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=21.15 E-value=1e+02 Score=23.62 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHhhcccccChhhHHHHHHHhcChhHHH
Q psy14174 11 ISVSSLLETLQESQSTFSANDEELLFLSSLLQSKELNA 48 (269)
Q Consensus 11 ~~~~~vL~~L~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 48 (269)
.|+.++..+|.+..-. .-..++.||+.++.+|.|++
T Consensus 63 ~A~~rl~~aL~e~~i~--Gv~TN~~~l~~ll~~~~f~~ 98 (107)
T smart00878 63 EAIARLRRALDEFRIE--GVKTNIPFLRALLRHPDFRA 98 (107)
T ss_pred HHHHHHHHHHHhCEEE--CccCCHHHHHHHhcCHhhhc
Confidence 3788888888766332 25678999999999999964
No 132
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=20.57 E-value=2.6e+02 Score=27.49 Aligned_cols=46 Identities=24% Similarity=0.226 Sum_probs=38.2
Q ss_pred CChhhhcCCCCCCCeEEEECCEecCCCChHHHHHHHHcCCCeEEEE
Q psy14174 168 GGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFK 213 (269)
Q Consensus 168 gg~A~r~GlL~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~l~ 213 (269)
|...-..|.+..||.++-|+.+-.+|.+..++++++++.|..|.-.
T Consensus 381 G~~~~ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V~~v 426 (477)
T PRK05500 381 GTRRLIEGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDI 426 (477)
T ss_pred CCCceEecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEE
Confidence 3333445667899999999999999999999999999999887444
Done!