RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14174
(269 letters)
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 127 bits (322), Expect = 6e-38
Identities = 56/87 (64%), Positives = 72/87 (82%)
Query: 132 EETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINV 191
++VKI++LVK+ EPLGATIK DE++G I+VAR+M GGAADRSGLIHVGDE+ EVNGI V
Sbjct: 2 SDSVKIIRLVKNREPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPV 61
Query: 192 EGKTPGDVLKILQSSEGTITFKLIPAD 218
E K P ++++IL S+G ITFK+IP
Sbjct: 62 EDKRPEEIIQILAQSQGAITFKIIPGS 88
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 118 bits (296), Expect = 1e-33
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 16/127 (12%)
Query: 107 AHDAVA-QKDYYPRLPEIPQELVDDEEETVKIVQLVK--SNEPLGATIK----------T 153
H ++ +D+ P I VD ET + V+L K + +PLG I+
Sbjct: 4 PHIVISMPQDFRPVSSIID---VDILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHG 60
Query: 154 DEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFK 213
E+ I ++R++ GG A +GL+ V DEV EVNGI V GK+ V ++ ++ +
Sbjct: 61 LEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIIT 120
Query: 214 LIPADNK 220
+ PA+ +
Sbjct: 121 VRPANQR 127
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 127 bits (319), Expect = 2e-33
Identities = 44/190 (23%), Positives = 76/190 (40%), Gaps = 31/190 (16%)
Query: 107 AHDAVAQKDYYPRLPEIPQELVDDEEETVKIVQLVKSNEPLGATIKTDEESGKIVVARVM 166
A + + Y P ++ E E + + + + + LG I E+ I ++ ++
Sbjct: 282 AMTPTSPRRYSPVAKDLLGEEDIPRE--PRRIVIHRGSTGLGFNIVGGEDGEGIFISFIL 339
Query: 167 HGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPADNKLGYRES 226
GG AD SG + GD++ VNG+++ + L+++ T+T + E+
Sbjct: 340 AGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEA 399
Query: 227 KI---------------------------RVRAHFDYDASSDPYIPCKDAGLSFNKGDIL 259
KI +RA FDYD + D + LSF GD+L
Sbjct: 400 KIHDLREQLMNSSLGSGTASLRSNPKRGFYIRALFDYDKTKDCGFLSQ--ALSFRFGDVL 457
Query: 260 HVVSQDDAYW 269
HV+ D W
Sbjct: 458 HVIDAGDEEW 467
Score = 95.0 bits (235), Expect = 3e-22
Identities = 26/164 (15%), Positives = 54/164 (32%), Gaps = 12/164 (7%)
Query: 107 AHDAVAQKDYYPRLPEIPQELVDDEEETVKIVQLVKSNEPLGATIK------TDEESGKI 160
A+ + + E E + + L + N LG +I + I
Sbjct: 33 ANSPPVIVNTDTLEAPGYVNGTEGEMEYEE-ITLERGNSGLGFSIAGGTDNPHIGDDPSI 91
Query: 161 VVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPADNK 220
+ +++ GGAA + G + V D + VN ++V T ++ L+ + + ++
Sbjct: 92 FITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPP 151
Query: 221 LGYRESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQ 264
++ S G GD V++
Sbjct: 152 AEKVMEIKLIKGPKGLGFS-----IAGGVGNQHIPGDNSIYVTK 190
Score = 58.4 bits (140), Expect = 7e-10
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 139 QLVKSNEPLGATIKT------DEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVE 192
+L+K + LG +I I V +++ GGAA + G + +GD++ VN + +E
Sbjct: 159 KLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLE 218
Query: 193 GKTPGDVLKILQSSEGTITFKLIP 216
D + L+++ + K+
Sbjct: 219 DVMHEDAVAALKNTYDVVYLKVAK 242
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 123 bits (309), Expect = 4e-33
Identities = 31/144 (21%), Positives = 52/144 (36%), Gaps = 6/144 (4%)
Query: 129 DDEEETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNG 188
++K+V+ K + +G + + G I VA V+ A + GL GD++ VN
Sbjct: 4 MILRPSMKLVKFRK-GDSVGLRLAGGNDVG-IFVAGVLEDSPAAKEGL-EEGDQILRVNN 60
Query: 189 INVEGKTPGDVLKILQSSEGTITFKLIPADNKLGYRESKIRVRAHFDYDASSDPYIPCKD 248
++ + + L ++ K YR Y + Y
Sbjct: 61 VDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESP 120
Query: 249 AGLSFNKGDILHVVS---QDDAYW 269
GLSFNKG++ VV
Sbjct: 121 YGLSFNKGEVFRVVDTLYNGKLGS 144
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 114 bits (288), Expect = 7e-33
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 129 DDEEETVKIVQLVK-SNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVN 187
V+++Q K + EP+G +K +E+ VAR++HGG R G +HVGDE+ E+N
Sbjct: 7 HHSGHMVRLIQFEKVTEEPMGICLKLNEK-QSCTVARILHGGMIHRQGSLHVGDEILEIN 65
Query: 188 GINVEGKTPGDVLKILQSSEGTITFKLIPAD 218
G NV + + K ++ ++G I+ K+IP
Sbjct: 66 GTNVTNHSVDQLQKAMKETKGMISLKVIPNQ 96
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 114 bits (288), Expect = 1e-32
Identities = 41/99 (41%), Positives = 65/99 (65%), Gaps = 3/99 (3%)
Query: 122 EIPQELVDDEEETVKIVQLVKS-NEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVG 180
+ + + ETVKIV++ K+ + PLGAT++ E ++++R++ GGAA++SGL+H G
Sbjct: 13 RVYESIGHYGGETVKIVRIEKARDIPLGATVR--NEMDSVIISRIVKGGAAEKSGLLHEG 70
Query: 181 DEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPADN 219
DEV E+NGI + GK +V +L GT+TF LIP+
Sbjct: 71 DEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSSG 109
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 110 bits (277), Expect = 3e-31
Identities = 40/92 (43%), Positives = 61/92 (66%), Gaps = 7/92 (7%)
Query: 135 VKIVQLVKS-NEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
++VQ K+ +EP+G T+K +E +VAR+MHGG R G +HVGDE+ E+NGI+V
Sbjct: 2 SRLVQFQKNTDEPMGITLKMNEL-NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVAN 60
Query: 194 KTPGDVLKILQSSEGTITFKLIPADNKLGYRE 225
+T + K+L+ G+ITFK++P+ YRE
Sbjct: 61 QTVEQLQKMLREMRGSITFKIVPS-----YRE 87
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 116 bits (292), Expect = 3e-30
Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 6/139 (4%)
Query: 134 TVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
++K+V+ K + +G + + G I VA V+ A + GL GD++ VN ++
Sbjct: 1 SMKLVKFRK-GDSVGLRLAGGNDVG-IFVAGVLEDSPAAKEGL-EEGDQILRVNNVDFTN 57
Query: 194 KTPGDVLKILQSSEGTITFKLIPADNKLGYRESKIRVRAHFDYDASSDPYIPCKDAGLSF 253
+ + L ++ K YR Y + Y GLSF
Sbjct: 58 IIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLSF 117
Query: 254 NKGDILHVVS---QDDAYW 269
NKG++ VV
Sbjct: 118 NKGEVFRVVDTLYNGKLGS 136
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 102 bits (256), Expect = 5e-28
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 132 EETVKIVQLVKSNEPLGATIK-TDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGIN 190
+ V+L + PLG TI T+E I+++ + GG A+R+G IH+GD + +N +
Sbjct: 3 GAIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSS 62
Query: 191 VEGKTPGDVLKILQSSEGTITFKLIP 216
++GK + + +LQ + T+T K+
Sbjct: 63 LKGKPLSEAIHLLQMAGETVTLKIKK 88
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 101 bits (254), Expect = 6e-28
Identities = 30/90 (33%), Positives = 55/90 (61%), Gaps = 4/90 (4%)
Query: 131 EEETVKIVQLVKS-NEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGI 189
+ ++V + K+ E LG T + E G++V+AR++HGG + GL+HVGD + EVNG
Sbjct: 3 SGSSGRMVGIRKTAGEHLGVTFR--VEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQ 60
Query: 190 NVEGKTPGDVLKILQSSEGTITFKLIPADN 219
V G P + ++L+++ G++ K++ +
Sbjct: 61 PV-GSDPRALQELLRNASGSVILKILSGPS 89
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 99.1 bits (247), Expect = 2e-26
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 135 VKIVQLVKS-NEPLGATIKTDEESGK--IVVARVMHGGAADRSGLIHVGDEVCEVNGINV 191
+V++VK+ LG ++ T K I + R+ DRSG +H GD + ++G ++
Sbjct: 16 PLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSM 75
Query: 192 EGKTPGDVLKILQSSEGTITFKLIPA 217
E + + K+L S + +++P
Sbjct: 76 EHCSLLEATKLLASISEKVRLEILPV 101
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 92.9 bits (231), Expect = 2e-24
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 136 KIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
K V + KS + LG TI TD G + R+ GG D I VGD + +NG N+ G
Sbjct: 7 KEVNVYKSEDSLGLTI-TDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWR 65
Query: 196 PGDVLKILQSSEGTITFKL 214
DV K L+ + F +
Sbjct: 66 HYDVAKKLKELKKEELFTM 84
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 91.7 bits (228), Expect = 7e-24
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 131 EEETVKIVQLVKS-NEPLGATIK---TDEESGKIVVARVMHGGAADRSGLIHVGDEVCEV 186
+ + V L K E LG + V+A ++HGG A+RSG + +GD + +
Sbjct: 6 SGDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAI 65
Query: 187 NGINVEGKTPGDVLKILQSSEGTITFKL 214
NG ++ G ++ ++ + L
Sbjct: 66 NGTSLVGLPLAACQAAVRETKSQTSVTL 93
>3lra_A Disks large homolog 1, maguk P55 subfamily member protein LIN-7
homolog C; tripartite complex, L27 tetramer, cell
junction; 2.95A {Homo sapiens} PDB: 1rso_A
Length = 254
Score = 95.7 bits (237), Expect = 1e-23
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 7/145 (4%)
Query: 10 DISVSSLLETLQESQSTFSANDEELLFLSSLLQSKELNALVHVHNSIVNEQSH---PVLS 66
D + LL L + E+L FL + K L++LV +H + + P+L
Sbjct: 75 DTGLYELLAALPAQLQPHVDSQEDLTFLWDMFGEKSLHSLVKIHEKLHYYEKQSPVPILH 134
Query: 67 NAMQISLEVLDVLLSRLALNDDCKELFVLLQRPNLQGLLCAHDAVAQKDYYPRLPEIPQE 126
A ++ ++ + L ++ LN + +EL LL +PN++ LL HD VAQK+Y +
Sbjct: 135 GAAALADDLAEELQNK-PLNSEIRELLKLLSKPNVKALLSVHDTVAQKNYDLEVLFQGPA 193
Query: 127 L---VDDEEETVKIVQLVKSNEPLG 148
L V E + + ++L++ + G
Sbjct: 194 LGEPVRLERDICRAIELLEKLQRSG 218
>3uit_A INAD-like protein, maguk P55 subfamily member 5, LIN-7 homolog B;
L27 domain, cell polarization, cell adhesion; 2.05A {Mus
musculus} PDB: 1y76_A 1y76_B 1y74_A
Length = 265
Score = 93.5 bits (231), Expect = 7e-23
Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 10 DISVSSLLETLQESQSTFS--ANDEELLFLSSLLQSKELNALVHVHNSIVNEQS-----H 62
+ + L +L+ Q T + E++ L L+Q+K+ +HN+I +
Sbjct: 79 ILEIEDLFSSLKHIQHTLVDSQSQEDISLLLQLVQNKDFQNAFKIHNAITVHMNKASPPF 138
Query: 63 PVLSNAMQISLEVLDVLLSRLALNDDCKELFVLLQRPNLQGLLCAHDAVAQKDYYPRLPE 122
P++SNA ++ EV VL + + +EL LL P++Q LL AHD VA+++ L
Sbjct: 139 PLISNAQDLAQEVQTVLKP--VHHKEGQELTALLNTPHIQALLLAHDKVAEQEMGGGLEV 196
Query: 123 IPQ-----ELVDDEEETVKIVQLVKSNEPLG 148
+ Q E + E + + V+L++ + G
Sbjct: 197 LFQGPALVEPLGLERDVSRAVELLERLQRSG 227
Score = 28.0 bits (61), Expect = 2.9
Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 17/124 (13%)
Query: 15 SLLETLQE--SQSTFSANDEELLFLSSLLQSKELNALVHVHNSI------VNEQSHPVLS 66
+L+ L+ + + +E+L L+S N ++ + SI ++ VL
Sbjct: 14 QVLDRLRGKLQEKGDTTQNEKLSAFYETLKSPLFNQILTLQQSIKQLKGQLSHIPLEVLF 73
Query: 67 NAMQISLEVLDVL---------LSRLALNDDCKELFVLLQRPNLQGLLCAHDAVAQKDYY 117
LE+ D+ L +D L L+Q + Q H+A+
Sbjct: 74 QGPVKILEIEDLFSSLKHIQHTLVDSQSQEDISLLLQLVQNKDFQNAFKIHNAITVHMNK 133
Query: 118 PRLP 121
P
Sbjct: 134 ASPP 137
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 83.3 bits (206), Expect = 7e-21
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 125 QELVDDEEETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVC 184
L T +++ LG +++ ++ +M GG A+R G+ VG +
Sbjct: 4 HHLETMGNVTTVLIRRPDLRYQLGFSVQNG------IICSLMRGGIAERGGV-RVGHRII 56
Query: 185 EVNGINVEGKTPGDVLKILQSSEGTITFKLIPA 217
E+NG +V ++ IL ++ G I K +PA
Sbjct: 57 EINGQSVVATPHEKIVHILSNAVGEIHMKTMPA 89
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 79.0 bits (195), Expect = 7e-19
Identities = 23/84 (27%), Positives = 39/84 (46%)
Query: 129 DDEEETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNG 188
+ + + L K + LG I E+ I V+ ++ GG AD SG + GD + VNG
Sbjct: 10 GGDAREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNG 69
Query: 189 INVEGKTPGDVLKILQSSEGTITF 212
+N+ T L+ + ++T
Sbjct: 70 VNLRNATHEQAAAALKRAGQSVTI 93
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 78.1 bits (193), Expect = 7e-19
Identities = 17/93 (18%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 123 IPQELVDDEEETVKIVQLVK-SNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGD 181
IP+ ++ V L+K + + LG ++ +E +A ++ G + + GD
Sbjct: 2 IPRNSLEKFN-----VDLMKKAGKELGLSLSPNEIG--CTIADLIQGQYPEIDSKLQRGD 54
Query: 182 EVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
+ + NG +EG + + + G ++ ++
Sbjct: 55 IITKFNGDALEGLPFQVSYALFKGANGKVSMEV 87
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 77.3 bits (191), Expect = 1e-18
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 136 KIVQLVK-SNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGK 194
+ + + K S +G K +GKI ++ +A R+GL +CE+NG NV G
Sbjct: 6 RTITMHKDSTGHVGFIFK----NGKIT--SIVKDSSAARNGL-LTEHNICEINGQNVIGL 58
Query: 195 TPGDVLKILQSSEGTITFKLIPA 217
+ IL +S +T ++PA
Sbjct: 59 KDSQIADILSTSGTVVTITIMPA 81
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 77.4 bits (191), Expect = 2e-18
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 133 ETVKIVQLVKSNEPLGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEVNGINV 191
K++ L + +E LG +I +E G I+++ + G ADR G +HVGD + VNG+N+
Sbjct: 9 PIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNL 68
Query: 192 EGKTPGDVLKILQSSEGTITFKLIP 216
+ + IL G I F+++
Sbjct: 69 RDTKHKEAVTILSQQRGEIEFEVVY 93
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 76.5 bits (189), Expect = 3e-18
Identities = 27/80 (33%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 136 KIVQLVKSNEPLGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGK 194
+V+L K++E LG I +E I ++RV+ GG ADR G + GD++ VNG++VEG+
Sbjct: 7 GVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGE 66
Query: 195 TPGDVLKILQSSEGTITFKL 214
+++L++++G++ +
Sbjct: 67 QHEKAVELLKAAQGSVKLVV 86
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 76.6 bits (189), Expect = 4e-18
Identities = 22/99 (22%), Positives = 45/99 (45%)
Query: 129 DDEEETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNG 188
+D + + + + + LG I E I ++ ++ GG AD SG + GD++ VNG
Sbjct: 6 EDIPREPRRIVIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNG 65
Query: 189 INVEGKTPGDVLKILQSSEGTITFKLIPADNKLGYRESK 227
+++ + L+++ T+T + E+K
Sbjct: 66 VDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAK 104
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 75.5 bits (186), Expect = 1e-17
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 121 PEIPQELVDDEEETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVG 180
PE E +D + + + + + LG I E+ I ++ ++ GG AD SG + G
Sbjct: 3 PEFLGE--EDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKG 60
Query: 181 DEVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
D++ VNG+++ + L+++ T+T
Sbjct: 61 DQILSVNGVDLRNASHEQAAIALKNAGQTVTIIA 94
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 74.6 bits (184), Expect = 2e-17
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 132 EETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINV 191
+T+ I K + LG +I + V+ ++ GG AD G + GD++ VNG +V
Sbjct: 3 SDTLTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDV 62
Query: 192 EGKTPGDVLKILQSSEGTITFKL 214
T V +L+ S GT+T ++
Sbjct: 63 RNATQEAVAALLKCSLGTVTLEV 85
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 75.2 bits (185), Expect = 2e-17
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 131 EEETVKIVQLVKSNEPLGATIK--TDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNG 188
+ V+++ +K L ++ D GK+VV+ V GGAA+R G + GDE+ +NG
Sbjct: 15 AGKDVRLL-RIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAING 73
Query: 189 INVEGKTPGDVLKILQSSEG 208
V T + LQ +
Sbjct: 74 KIVTDYTLAEAEAALQKAWN 93
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 74.8 bits (184), Expect = 2e-17
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 138 VQLVK-SNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTP 196
V+L K LG +K ++++ ++ GGAA++SGLI GD + VN + +
Sbjct: 5 VRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSY 64
Query: 197 GDVLKILQSSEGTITFKLI 215
L++L+ LI
Sbjct: 65 DSALEVLRGIASETHVVLI 83
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 74.4 bits (183), Expect = 3e-17
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 116 YYPRLPEIPQELVDDE--EETVKIVQLVKSNEPLGATIKTDEESG-KIVVARVMHGGAAD 172
++ I +++ + K++ L + +E LG +I +E G I+++ + G AD
Sbjct: 8 HHHSSGHIEGRHMENLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPAD 67
Query: 173 RSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
R G +HVGD + VNG+N+ + + IL G I F++
Sbjct: 68 RCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEV 109
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 74.0 bits (182), Expect = 3e-17
Identities = 14/82 (17%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 133 ETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVE 192
E + + K+ + LG ++ +E +A ++ G + + GD + + NG +E
Sbjct: 2 EKFNVDLMKKAGKELGLSLSPNEIG--CTIADLIQGQYPEIDSKLQRGDIITKFNGDALE 59
Query: 193 GKTPGDVLKILQSSEGTITFKL 214
G + + + G ++ ++
Sbjct: 60 GLPFQVCYALFKGANGKVSMEV 81
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 74.4 bits (183), Expect = 4e-17
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 129 DDEEETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNG 188
E + V++ K +EPLG +I + E+ G I V++V G A ++GL GD++ E NG
Sbjct: 14 RPYVEEPRHVKVQKGSEPLGISIVSGEKGG-IYVSKVTVGSIAHQAGL-EYGDQLLEFNG 71
Query: 189 INVEGKTPGDVLKILQSSEGTITF 212
IN+ T I+ TIT
Sbjct: 72 INLRSATEQQARLIIGQQCDTITI 95
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 73.6 bits (181), Expect = 6e-17
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 124 PQELVDDEEETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEV 183
P+ + E V +L+ LG I + SG +VV ++ GG ADR G + GD +
Sbjct: 8 PETVCWGHVEEV---ELINDGSGLGFGIVGGKTSG-VVVRTIVPGGLADRDGRLQTGDHI 63
Query: 184 CEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
++ G NV+G T V ++L++ ++ +
Sbjct: 64 LKIGGTNVQGMTSEQVAQVLRNCGNSVRMLV 94
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 77.5 bits (191), Expect = 6e-17
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 224 RESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
++ + VRA FDYD + D +P + GL F GDILHV + D W
Sbjct: 2 QKRSLYVRALFDYDPNRDDGLPSR--GLPFKHGDILHVTNASDDEW 45
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 72.7 bits (179), Expect = 9e-17
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 130 DEEETVKIVQLVKSNEPLGATIKT-DEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNG 188
V L + G I DE I++ V+ G+ADR G +H GDE+ V+G
Sbjct: 5 SSGYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDG 64
Query: 189 INVEGKTPGDVLKILQSSEGTITFKLI 215
I V GKT V+ ++ + L
Sbjct: 65 IPVAGKTHRYVIDLMHHAARNGQVNLT 91
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 73.2 bits (180), Expect = 1e-16
Identities = 19/94 (20%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 122 EIPQELVDDEEETVKIVQLVKSNEPLGATIKTDEESGK-IVVARVMHGGAADRSGLIHVG 180
++ E + + V+L + + G +++ E + V R+ G A+RSG + +G
Sbjct: 12 DLGTENLYFQSMDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIG 71
Query: 181 DEVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
DE+ E+NG + ++++++ + L
Sbjct: 72 DEILEINGETTKNMKHSRAIELIKNGGRRVRLFL 105
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 75.2 bits (185), Expect = 1e-16
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 129 DDEEETVKIVQLVKS-NEPLGATIKT-DEESGKIVVARVMHGGAADRSGLIHVGDEVCEV 186
+ +V+L+K LG T+ ++ GK V+ + GG A RS + VGD + V
Sbjct: 2 PGSFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAV 61
Query: 187 NGINVEGKTPGDVLKILQSSEGTITFKL 214
NGIN+ +++ +L++ + ++
Sbjct: 62 NGINLAKFRHDEIISLLKNVGERVVLEV 89
Score = 72.8 bits (179), Expect = 8e-16
Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 5/101 (4%)
Query: 119 RLPEIPQELVDDEEETVKIVQLVKSNEPLGATIKTDEESGK-----IVVARVMHGGAADR 173
V L K G I+ + +V+ V GG ADR
Sbjct: 91 YELPPVSIQGSSVMFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADR 150
Query: 174 SGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
G I GD + V+GI + G T + + IL+ T +
Sbjct: 151 EGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLI 191
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 73.4 bits (180), Expect = 1e-16
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 131 EEETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGIN 190
E + + + LG +K ++++ ++ GGAA++SGLI GD + VN
Sbjct: 6 EPNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRP 65
Query: 191 VEGKTPGDVLKILQSSEGTITFKLI 215
+ + L++L+ LI
Sbjct: 66 LVDLSYDSALEVLRGIASETHVVLI 90
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 71.5 bits (176), Expect = 2e-16
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 136 KIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
++ L K G + ++ + V G A+++GL GD + EVNG NVE +T
Sbjct: 5 RLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGL-LAGDRLVEVNGENVEKET 63
Query: 196 PGDVLKILQSSEGTITFKLIPAD 218
V+ ++++ + ++ +
Sbjct: 64 HQQVVSRIRAALNAVRLLVVDPE 86
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 72.5 bits (178), Expect = 2e-16
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 131 EEETVKIVQLVK-SNEPLGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEVNG 188
+ V L K + +G +I + + + +V A G + GDE+ VNG
Sbjct: 21 QSMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNG 80
Query: 189 INVEGKTPGDVLKILQSSEGTITFKL 214
+++GKT +V K++Q +G +T
Sbjct: 81 RSIKGKTKVEVAKMIQEVKGEVTIHY 106
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 72.1 bits (177), Expect = 2e-16
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 133 ETVKIVQLVKSNEPLGATIK--TDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGIN 190
+ +V++ KS LG I+ + + + GG+A G + VG + EVNG+
Sbjct: 5 SSGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLT 64
Query: 191 VEGKTPGDVLKILQSSEGTITFKLI 215
+ GK + +I+ + T I
Sbjct: 65 LRGKEHREAARIIAEAFKTKDRDYI 89
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 72.0 bits (177), Expect = 2e-16
Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 136 KIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
++V + K + G ++ E ++ + G A+ +GL D V VNG +VE
Sbjct: 8 RVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGL-KNNDLVVAVNGKSVEALD 66
Query: 196 PGDVLKILQSSEGTITFKLIPADNKLGYRESK 227
V+++++ T ++ + + Y S
Sbjct: 67 HDGVVEMIRKGGDQTTLLVLDKEAESIYSLSG 98
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 72.0 bits (177), Expect = 2e-16
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 129 DDEEETVKIVQLVKSNEPLGATIK--TDEESGKIVVARVMHGGAADRSGLIHVGDEVCEV 186
++ V + K + G +I+ + + + V R+ G A R+G + VGD++ E+
Sbjct: 6 SGQDFDYFTVDMEKGAKGFGFSIRGGREYKMD-LYVLRLAEDGPAIRNGRMRVGDQIIEI 64
Query: 187 NGINVEGKTPGDVLKILQSSEGTITFKL 214
NG + T +++++S + L
Sbjct: 65 NGESTRDMTHARAIELIKSGGRRVRLLL 92
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 71.9 bits (177), Expect = 2e-16
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 138 VQLVKSNEPLGATIKTDEESGK---IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGK 194
V+LV+ G T+ + + V ++ G A R G + VGD V +NG + +G
Sbjct: 15 VELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGL 74
Query: 195 TPGDVLKILQSSEGTITFKL 214
T ++ +++ + +
Sbjct: 75 THAQAVERIRAGGPQLHLVI 94
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 74.4 bits (183), Expect = 2e-16
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 132 EETVKIVQLVKSNEPLGATI------KTDEESGKIVVARVMHGGAADRSGLIHVGDEVCE 185
+ + L + N LG +I + I + +++ GGAA + G + V D +
Sbjct: 3 SMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILF 62
Query: 186 VNGINVEGKTPGDVLKILQSSEGTITFKL 214
VN ++V T ++ L+ + + +
Sbjct: 63 VNEVDVREVTHSAAVEALKEAGSIVRLYV 91
Score = 69.0 bits (169), Expect = 2e-14
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 139 QLVKSNEPLGATIKTDEESGK------IVVARVMHGGAADRSGLIHVGDEVCEVNGINVE 192
+L+K + LG +I + I V +++ GGAA + G + +GD++ VN + +E
Sbjct: 105 KLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLE 164
Query: 193 GKTPGDVLKILQSSEGTITFKL 214
D + L+++ + K+
Sbjct: 165 DVMHEDAVAALKNTYDVVYLKV 186
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 70.8 bits (174), Expect = 4e-16
Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 136 KIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
++V + K + G ++ E ++ + G A+ +GL D V VNG +VE
Sbjct: 7 RVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGL-KNNDLVVAVNGKSVEALD 65
Query: 196 PGDVLKILQSSEGTITFKLIPADNKLGYRE 225
V+++++ T ++ + + +R+
Sbjct: 66 HDGVVEMIRKGGDQTTLLVLDKELERPHRD 95
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 75.2 bits (185), Expect = 4e-16
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+RA FDYD + D + LSF GD+LHV+ D W
Sbjct: 4 IRALFDYDKTKDCGFLSQ--ALSFRFGDVLHVIDAGDEEW 41
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 71.3 bits (175), Expect = 5e-16
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 132 EETVKIVQLVKSNEPLGATIKTDEESGK-----IVVARVMHGGAADRSGLIHVGDEVCEV 186
VKIV+LVK + LG +I ++ IV+ ++ G A+RSG + GD + V
Sbjct: 13 SPEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSV 72
Query: 187 NGINVEGKTPGDVLKILQSS-EGTITFKL 214
N ++ + + ++IL++ G + +
Sbjct: 73 NEYCLDNTSLAEAVEILKAVPPGLVHLGI 101
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 70.9 bits (174), Expect = 5e-16
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 136 KIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
++ LVK G ++KT + + + + G A R+G+ D + EVNG NVE +
Sbjct: 10 RLCYLVKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGV-LADDHLIEVNGENVEDAS 68
Query: 196 PGDVLKILQSSEGTITFKLIPADNKLGYRESKI 228
+V++ ++ S + F L+ + + E K
Sbjct: 69 HEEVVEKVKKSGSRVMFLLVDKETDKRHVEQKS 101
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 71.3 bits (175), Expect = 6e-16
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 124 PQELVDDEEETVKIVQLVKSNEPLGATIK--TDEESGKIVVARVMHGGAADRSGLIHVGD 181
+ + + + LG ++ D E+ I V RV G A + G I G+
Sbjct: 6 SGATLKQLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGN 65
Query: 182 EVCEVNGINVEGKTPGDVLKILQSSEGTITFKLI 215
EV +NG +++G T D L IL+ + ++
Sbjct: 66 EVLSINGKSLKGTTHHDALAILRQAREPRQAVIV 99
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 71.3 bits (175), Expect = 7e-16
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 129 DDEEETVKIVQLVKSNEPLGATIK--TDEESGKIVVARVMHGGAADRSGLIHVGDEVCEV 186
D + I++L K LG ++ D I V + G A G + +GDE+ E+
Sbjct: 20 ADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEI 79
Query: 187 NGINVEGKTPGDVLKILQSSEGTITFKL 214
N + G++ + I++++ +
Sbjct: 80 NNQILYGRSHQNASAIIKTAPSKVKLVF 107
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 70.0 bits (172), Expect = 8e-16
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 136 KIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
++ L K + G + +D+ + V G A RSGL D + EVNG NVEG
Sbjct: 6 RLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGL-RAQDRLIEVNGQNVEGLR 64
Query: 196 PGDVLKILQSSEGTITFKLIPADNKL 221
+V+ +++ E ++ +L
Sbjct: 65 HAEVVASIKAREDEARLLVVGPSTRL 90
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 71.1 bits (174), Expect = 8e-16
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 148 GATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSE 207
G E I V +V GG A +GL GD + +VNG +V GKT V+ ++Q+S+
Sbjct: 51 GKQRNRLEPMDTIFVKQVKEGGPAFEAGL-CTGDRIIKVNGESVIGKTYSQVIALIQNSD 109
Query: 208 GTITFKLIPAD 218
T+ ++P D
Sbjct: 110 TTLELSVMPKD 120
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 70.0 bits (172), Expect = 8e-16
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 138 VQLVKSNEPLGATIK-----TDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVE 192
V+L K+ + LG TI E I V + A + G I +GD++ V+G N++
Sbjct: 8 VELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQ 67
Query: 193 GKTPGDVLKILQSSEGTITFKL 214
G T +++L+ + T+ L
Sbjct: 68 GFTNQQAVEVLRHTGQTVLLTL 89
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 73.0 bits (179), Expect = 9e-16
Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 129 DDEEETVKIVQLVK-SNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVN 187
D E V L+K + + LG ++ +E +A ++ G + + GD + + N
Sbjct: 108 DPPELEKFNVDLMKKAGKELGLSLSPNEIG--CTIADLIQGQYPEIDSKLQRGDIITKFN 165
Query: 188 GINVEGKTPGDVLKILQSSEGTITFKL 214
G +EG + + + G ++ ++
Sbjct: 166 GDALEGLPFQVCYALFKGANGKVSMEV 192
Score = 58.0 bits (140), Expect = 2e-10
Identities = 12/82 (14%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 117 YPRLPEIPQELVDDEEETVKIVQLVKSNEPLGATI---KTDEESGKIVVARVMHGGAADR 173
E+ +++ ++ L +P+G + K + + V+ V G
Sbjct: 4 SKPQEPATAEIKPNKKILIE---LKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAA 60
Query: 174 SGLIHVGDEVCEVNGINVEGKT 195
+ + D +C++NG + +
Sbjct: 61 DKRLKIFDHICDINGTPIHVGS 82
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 69.6 bits (171), Expect = 1e-15
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 137 IVQLVKSNEPLGATIK--TDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGK 194
+++ K LG +I +D G I++ V GAA + G + GD++ EVNGI++
Sbjct: 7 TIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKA 66
Query: 195 TPGDVLKILQSSEGTITFKL 214
T + + +L+ + + L
Sbjct: 67 THDEAINVLRQTPQRVRLTL 86
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 70.2 bits (172), Expect = 1e-15
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 132 EETVKIVQLVK-SNEPLGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEVNGI 189
V L K + +G +I + + + +V A G + GDE+ VNG
Sbjct: 17 PTVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGR 76
Query: 190 NVEGKTPGDVLKILQSSEGTITFKL 214
+++GKT +V K++Q +G +T
Sbjct: 77 SIKGKTKVEVAKMIQEVKGEVTIHY 101
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 70.1 bits (172), Expect = 2e-15
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 124 PQELVDDEEETVKIVQLVKSNEPLGATIK--TDEESGK--IVVARVMHGGAADRSGLIHV 179
+ L K + L + + LG +I G I V V GAA G +
Sbjct: 15 TENLYFQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKR 74
Query: 180 GDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
GD++ VNG ++EG T + + IL+ ++GT+T +
Sbjct: 75 GDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMV 109
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 69.8 bits (171), Expect = 2e-15
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 129 DDEEETVKIVQLVKSNEPLGATIKT--------DEESGKIVVARVMHGGAADRSGLIHVG 180
+T +V K NE G I + + + R++ G ADR + VG
Sbjct: 6 SGSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVG 65
Query: 181 DEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPADN 219
D + VNG ++ D++K+++ + ++T ++IP +
Sbjct: 66 DRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEE 104
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 69.7 bits (171), Expect = 2e-15
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 122 EIPQELVDDEEETVKIVQLVKSNEPLGATIKTDEESGK------IVVARVMHGGAADRSG 175
++ E + + TV ++L K + LG +I + I V +++ GGAA + G
Sbjct: 12 DLGTENLYFQSMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDG 71
Query: 176 LIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
+ VGD + VN ++E T + + IL+++ + K+
Sbjct: 72 RLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKV 110
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 68.8 bits (169), Expect = 2e-15
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 136 KIVQLVKSNEPLGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGK 194
+ + L + G I E G+ I + ++ GAAD G + GDE+ V+G V GK
Sbjct: 4 QDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGK 63
Query: 195 TPGDVLKILQSSEGTITFKLIPADNKL 221
+ V++++Q + L +L
Sbjct: 64 SHQLVVQLMQQAAKQGHVNLTVRQTRL 90
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 68.8 bits (169), Expect = 2e-15
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 133 ETVKIVQLVKSNEPLGATIK-----TDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVN 187
TV++ L K G I+ +S +V+ V GG ADR G I GD + V+
Sbjct: 3 RTVEVT-LHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVD 61
Query: 188 GINVEGKTPGDVLKILQSSEGTITFKL 214
GI + G T + + IL+ +
Sbjct: 62 GIRLLGTTHAEAMSILKQCGQEAALLI 88
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 69.4 bits (170), Expect = 3e-15
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 129 DDEEETVKIVQLVKSNEPLGATIKT-DEESGKIVVARVMHGGAADRSGLIHVGDEVCEVN 187
+ T L KSN G TI DE + V V+ G A + G + GD + +N
Sbjct: 14 SQLKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYIN 73
Query: 188 GINVEGKTPGDVLKILQSSEGTITFKLI 215
+ V G T DV+K+ QS + L+
Sbjct: 74 EVCVLGHTHADVVKLFQSVPIGQSVNLV 101
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 68.9 bits (169), Expect = 3e-15
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 130 DEEETVKIVQLVKSNEPLGATIK--TDEESGK----IVVARVMHGGAADRSGLIHVGDEV 183
D T + + L + LG I TD++ I V+R+ GAA G + GD++
Sbjct: 3 DYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKI 62
Query: 184 CEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
VNG +++ D + + +++ ++ ++
Sbjct: 63 LSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 93
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 68.5 bits (168), Expect = 3e-15
Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 136 KIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
++ + K G + +D+ + V A+ SGL D + EVNG+ +EGK
Sbjct: 11 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGL-RAQDRIVEVNGVCMEGKQ 69
Query: 196 PGDVLKILQSSEGTITFKLIPADNKLGYR 224
GDV+ +++ ++ + ++
Sbjct: 70 HGDVVSAIRAGGDETKLLVVDRETDEFFK 98
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 69.3 bits (170), Expect = 3e-15
Identities = 21/104 (20%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 121 PEIPQELVDDEEETVKIVQLVK-SNEPLGATIKTDEESGK----IVVARVMHGGAADRSG 175
++ E + + ++ V++ K + LG +I S I +A + G A ++
Sbjct: 11 VDLGTENLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQ 70
Query: 176 LIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPADN 219
+ VGD + + G + EG T + +L+++ G+I +++ +
Sbjct: 71 KLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGD 114
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 68.9 bits (169), Expect = 3e-15
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 137 IVQLVKSNEPLGATIK-------TDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGI 189
+ L +S LG +I I V+R+ GGAA R+G + VGD V +NG+
Sbjct: 10 VACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGV 69
Query: 190 NVEGKTPGDVLKILQSSEGTITFKL 214
+V + +L ++ TI L
Sbjct: 70 DVTEARHDHAVSLLTAASPTIALLL 94
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 68.5 bits (168), Expect = 4e-15
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 138 VQLVKSN--EPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
V L K + E LG + + + + ++ GG A + G + D V +NG +++ T
Sbjct: 7 VALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGT 66
Query: 196 PGDVLKILQSSEGTITFKL 214
P +I+Q+S + +
Sbjct: 67 PELAAQIIQASGERVNLTI 85
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 68.1 bits (167), Expect = 4e-15
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 138 VQLVKSNEPLGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTP 196
+L KS+ G T+ +E + + + ++ G A G + GD + VN V G T
Sbjct: 4 TKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTH 63
Query: 197 GDVLKILQSSEGTITFKLI 215
V+KI QS + L
Sbjct: 64 AQVVKIFQSIPIGASVDLE 82
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 70.6 bits (173), Expect = 5e-15
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 124 PQELVDDEEETVKIVQLVKSNEPLGATIKTD---EESGKIVVARVMHGGAADRSGLIHVG 180
E V T + K + LG TI + + +V++ + G A R+G + +G
Sbjct: 98 VAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELG 157
Query: 181 DEVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
D++ ++ I ++ + D ++ILQ E + K+
Sbjct: 158 DKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKI 191
Score = 70.6 bits (173), Expect = 5e-15
Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 15/134 (11%)
Query: 126 ELVDDEEETVKIVQLVKSNEPLGATIK-----TDEESGKIVVARVMHGGAADRSGLIHVG 180
++V E V + G ++ T+ S +++ + A+R G++ +G
Sbjct: 1 QVVHTETTEVVLT--ADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIG 58
Query: 181 DEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPADNKLGYRESKIRVRAHFDYDASS 240
D V +NGI E T + ++L+ S T L E +
Sbjct: 59 DRVMAINGIPTEDSTFEEANQLLRDSSITSKVTL--------EIEFDVAESVIPSSGTFH 110
Query: 241 DPYIPCKDAGLSFN 254
L
Sbjct: 111 VKLPKKHSVELGIT 124
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 68.6 bits (168), Expect = 5e-15
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 122 EIPQELVDDEEETVKIVQLVKSN-EPLGATIK----TDEESGKIVVARVMHGGAADRSGL 176
++ E + + K+V + K E LG T+ E I V V GG R G
Sbjct: 12 DLGTENLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGR 71
Query: 177 IHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPAD 218
I GD + V+G+ + + + + +L+ + +I K +
Sbjct: 72 IKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVK 113
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 68.7 bits (168), Expect = 5e-15
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 130 DEEETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGI 189
V +L N LG + + + ++ +++ GAA G++ GD + V
Sbjct: 23 SSLNKVIQTKLTVGNLGLGLVVIQNGPY--LQISHLINKGAAASDGILQPGDVLISVGHA 80
Query: 190 NVEGKTPGDVLKILQS 205
NV G T + LK+LQ+
Sbjct: 81 NVLGYTLREFLKLLQN 96
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 68.1 bits (167), Expect = 6e-15
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 129 DDEEETVKIVQLVKSNEPLGATIK-------TDEESGKIVVARVMHGGAADRSGLIHVGD 181
+ V+L K + LG +I E I V V GGAA R G I V D
Sbjct: 4 GSSGLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVND 63
Query: 182 EVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
++ EV+GI++ G T +L++++G + F +
Sbjct: 64 QIVEVDGISLVGVTQNFAATVLRNTKGNVRFVI 96
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 68.2 bits (167), Expect = 6e-15
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 137 IVQLVKSNEPLGATIK--TDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGK 194
I+++ K LG +I D IV+ V GAA R G + GD++ EVNG+++
Sbjct: 20 IIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNS 79
Query: 195 TPGDVLKILQSSEGTITFKL 214
+ + + L+ + + +
Sbjct: 80 SHEEAITALRQTPQKVRLVV 99
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 67.6 bits (166), Expect = 7e-15
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 138 VQLVKSNEPLGATIK----TDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
V+L K++ LG ++ T G I V V+ GAA+ G IH GD V VNG+++EG
Sbjct: 9 VELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEG 68
Query: 194 KTPGDVLKILQSSEGTITFKL 214
T ++ L+++ + L
Sbjct: 69 ATHKQAVETLRNTGQVVHLLL 89
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 68.3 bits (167), Expect = 7e-15
Identities = 17/98 (17%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 135 VKIVQLVK-SNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
+ +L K + G ++ ++++ ++ + G A+++GL GD V +NG+ V+
Sbjct: 14 PRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGL-LDGDRVLRINGVFVDK 72
Query: 194 KTPGDVLKILQSSEGTITFKLIPADNKLGYRESKIRVR 231
+ V+++++ S ++T ++ D+ ++++ ++
Sbjct: 73 EEHAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQVDLK 110
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 68.7 bits (168), Expect = 7e-15
Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 136 KIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
++ + K G + +D+ + V A+ SGL D + EVNG+ +EGK
Sbjct: 11 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGL-RAQDRIVEVNGVCMEGKQ 69
Query: 196 PGDVLKILQSSEGTITFKLIPADNKLGYRESKI 228
GDV+ +++ ++ + +++ ++
Sbjct: 70 HGDVVSAIRAGGDETKLLVVDRETDEFFKKCRV 102
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 67.7 bits (166), Expect = 7e-15
Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 131 EEETVKIVQLVKS-NEPLGATIK-------TDEESGKIVVARVMHGGAADRSGLIHVGDE 182
E + +V L K+ + G I + ++ I + ++ A G + VGD
Sbjct: 2 AGELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDR 61
Query: 183 VCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPAD 218
+ +NG +V T V+ +++ ++ I ++ D
Sbjct: 62 ILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQTFD 97
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 67.3 bits (165), Expect = 7e-15
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 136 KIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
K+ +L K G + + V GG AD +GL D + EVNG+NV +
Sbjct: 5 KLCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGL-EDEDVIIEVNGVNVLDEP 63
Query: 196 PGDVLKILQSSEGTITFKLIP 216
V+ +QSS +T +
Sbjct: 64 YEKVVDRIQSSGKNVTLLVCG 84
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 67.3 bits (165), Expect = 7e-15
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 138 VQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPG 197
V L+KS ++ + I V + G A + G +H GD + ++NG E +
Sbjct: 4 VLLMKSRANEEYGLRLGSQ---IFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLT 60
Query: 198 DVLKILQSSEGTITFKL 214
D K+++ S G + +
Sbjct: 61 DARKLIEKSRGKLQLVV 77
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 67.3 bits (165), Expect = 8e-15
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 134 TVKIVQLVKSNEPLGATI------KTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVN 187
T+ V L+K + LG +I + I + +++ GGAA + G + +GD + VN
Sbjct: 3 TIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVN 62
Query: 188 GINVEGKTPGDVLKILQSSEGTITFKL 214
N++ + + L+++ + K+
Sbjct: 63 NTNLQDVRHEEAVASLKNTSDMVYLKV 89
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 67.4 bits (165), Expect = 1e-14
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 129 DDEEETVKIVQLVKSNEPLGATI------KTDEESGKIVVARVMHGGAADRSGLIHVGDE 182
+V++ K LG +I T E+ I V ++ G AA G I D+
Sbjct: 10 GFSLYSVELF-REKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDK 68
Query: 183 VCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
+ V+ +NV+G DV+++L+++ + L
Sbjct: 69 ILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLL 100
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 67.9 bits (166), Expect = 1e-14
Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 129 DDEEETVKIVQLVKSNEPLGATIK--TDEESGK----IVVARVMHGGAADRSGLIHVGDE 182
D T + + L + LG I TD++ I V+R+ GAA G + GD+
Sbjct: 12 VDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDK 71
Query: 183 VCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
+ VNG +++ D + + +++ ++ ++
Sbjct: 72 ILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 103
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 67.4 bits (165), Expect = 1e-14
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 131 EEETVKIVQLVKSNEPLGATIK-------TDEESGKIVVARVMHGGAADRSGLIHVGDEV 183
E V+L K +E LG +I E I V V GGAA R G I V D +
Sbjct: 2 HMELFP-VELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLL 60
Query: 184 CEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
EV+G ++ G T +L++++G + F +
Sbjct: 61 VEVDGTSLVGVTQSFAASVLRNTKGRVRFMI 91
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 67.5 bits (165), Expect = 2e-14
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 132 EETVKIVQLVKSNEPLGATIKT-DEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGIN 190
+ +L KS+ G T+ DE + + ++ G A G + GD + VN
Sbjct: 16 KGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTC 75
Query: 191 VEGKTPGDVLKILQSSEGTITFKL 214
V G T V+KI QS + L
Sbjct: 76 VLGHTHAQVVKIFQSIPIGASVDL 99
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 67.0 bits (164), Expect = 2e-14
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 130 DEEETVKIVQLVKSNEPLGATIK---------TDEESGKIVVARVMHGGAADRSGLIHVG 180
+ + V+L K++ LG ++ T G I V V+ GAA+ G IH G
Sbjct: 5 PKPGDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKG 64
Query: 181 DEVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
D V VNG+++EG T ++ L+++ + L
Sbjct: 65 DRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 98
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 66.6 bits (163), Expect = 2e-14
Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 133 ETVKIVQLVKSNEPLGATI------KTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEV 186
E + ++L+K + LG +I + I V +++ GGAA + G + +GD++ V
Sbjct: 2 EKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 187 NGINVEGKTPGDVLKILQSSEGTITFKL 214
N +++E T + + L+++ + K+
Sbjct: 62 NSVSLEEVTHEEAVTALKNTSDFVYLKV 89
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 66.2 bits (162), Expect = 2e-14
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 131 EEETVKIVQLVKSNEPLGATIK-TDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGI 189
+ V + + LG +IK E I+++++ G AAD++ + VGD + VNG
Sbjct: 4 QRRRVTVRK--ADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGE 61
Query: 190 NVEGKTPGDVLKILQSSEGTITFKL 214
++ T + ++ L+ + + ++
Sbjct: 62 DLSSATHDEAVQALKKTGKEVVLEV 86
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 65.8 bits (161), Expect = 2e-14
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 138 VQLVKS--NEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
V LVKS NE G + + I V + A R G I GD V ++NG E +
Sbjct: 4 VTLVKSRKNEEYGLRL-----ASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMS 58
Query: 196 PGDVLKILQSSEGTITFKL 214
D +++ S+G + +
Sbjct: 59 LTDAKTLIERSKGKLKMVV 77
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 68.4 bits (167), Expect = 2e-14
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 131 EEETVKIVQLVKSNEPLGATIK-------TDEESGKIVVARVMHGGAADRSGLIHVGDEV 183
E + V+L K +E LG +I E I V V GGAA R G I V D +
Sbjct: 77 ERLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLL 136
Query: 184 CEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
EV+G ++ G T +L++++G + F +
Sbjct: 137 VEVDGTSLVGVTQSFAASVLRNTKGRVRFMI 167
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 66.6 bits (163), Expect = 2e-14
Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 135 VKIVQLVKSNEPLGATIK---------TDEESGKIVVARVMHGGAADRSGLIHVGDEVCE 185
+ L + + LG I S I V++++ G A + G + + D + E
Sbjct: 9 SLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIE 68
Query: 186 VNGINVEGKTPGDVLKILQSSEGTITFKL 214
VNG ++ T ++ ++++ I ++
Sbjct: 69 VNGRDLSRATHDQAVEAFKTAKEPIVVQV 97
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 69.4 bits (169), Expect = 2e-14
Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 1/107 (0%)
Query: 136 KIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
++ + K G + +D+ + V A+ SGL D + EVNG+ +EGK
Sbjct: 11 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGL-RAQDRIVEVNGVCMEGKQ 69
Query: 196 PGDVLKILQSSEGTITFKLIPADNKLGYRESKIRVRAHFDYDASSDP 242
GDV+ +++ ++ + +++ ++ P
Sbjct: 70 HGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLNGPLPVP 116
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 66.2 bits (162), Expect = 3e-14
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 131 EEETVKIVQLVKSNEPLGATIKTDEESGK----IVVARVMHGGAADRSGLIHVGDEVCEV 186
V V+L + LG + + + + ++ G A G + +GD + EV
Sbjct: 5 SSGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEV 64
Query: 187 NGINVEGKTPGDVLKILQSSEGTITFKL 214
NG ++ G + +++ + F +
Sbjct: 65 NGSSLLGLGYLRAVDLIRHGGKKMRFLV 92
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 66.2 bits (162), Expect = 3e-14
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 14/96 (14%)
Query: 136 KIVQLVKSNEPLGATIKTDEESGK-------------IVVARVMHGGAADRSGLIHVGDE 182
++V++VKS G ++ G V+ V+ GGAADR+G+ GD
Sbjct: 8 RVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGV-RKGDR 66
Query: 183 VCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPAD 218
+ EVNG+NVEG T V+ ++++ E + ++ +
Sbjct: 67 ILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVE 102
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 66.3 bits (162), Expect = 3e-14
Identities = 17/97 (17%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 136 KIVQLVK-SNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGK 194
+ +L K + G ++ ++++ ++ + G A+++GL GD V +NG+ V+ +
Sbjct: 3 RESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGL-LDGDRVLRINGVFVDKE 61
Query: 195 TPGDVLKILQSSEGTITFKLIPADNKLGYRESKIRVR 231
V+++++ S ++T ++ D+ ++++ ++
Sbjct: 62 EHAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQVDLK 98
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 66.8 bits (163), Expect = 4e-14
Identities = 21/102 (20%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 118 PRLPEIPQELVDDEEETVKIVQLVKSNEPLGATIK----TDEESGKIVVARVMHGGAADR 173
+ E TV V L K + LG +++ + + + R+ G A+++
Sbjct: 13 SASAASDVSVESTAEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQ 72
Query: 174 SGLIHVGDEVCEVNGINVEGKTPGDVLKILQSS-EGTITFKL 214
S + GDE+ ++ G ++G T + I+++ +G +T +
Sbjct: 73 SETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVI 114
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 66.2 bits (162), Expect = 4e-14
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 129 DDEEETVKIVQLVKS-NEPLGATIK--TDEESGK--------IVVARVMHGGAADRSGLI 177
++ + + K+ E LG +I+ +G I +++V GAA R G +
Sbjct: 4 GSSGPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRL 63
Query: 178 HVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
VG + EVN ++ G T G+ +++L+S T+T +
Sbjct: 64 RVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLV 100
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 65.4 bits (160), Expect = 5e-14
Identities = 15/86 (17%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 136 KIVQLVKSNEPLGATIKTDEESGK---IVVARVMHGGAADRSGLIHVGDEVCEVNGINVE 192
+ + L K + G ++ ++ + V G A ++G+ GD + V G +VE
Sbjct: 5 RCLHLEKGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGM-QAGDRLVAVAGESVE 63
Query: 193 GKTPGDVLKILQSSEGTITFKLIPAD 218
G + + +Q ++ ++ +
Sbjct: 64 GLGHEETVSRIQGQGSCVSLTVVDPE 89
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 65.6 bits (160), Expect = 6e-14
Identities = 18/101 (17%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 124 PQELVDDEEETVKIVQLVKSNEPLGATIK----------TDEESGKIVVARVMHGGAADR 173
P V+I + + N LG +I EE I + +V+ A +
Sbjct: 8 PNFSHWGPPRIVEIFR--EPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGK 65
Query: 174 SGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
+ + GD++ EV+G++++ + + ++ ++++ + F +
Sbjct: 66 TNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIV 106
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 66.0 bits (161), Expect = 7e-14
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 124 PQELVDDEEETVKIVQLVKSNEPLGATIK--TDEESGK---IVVARVMHGGAADRSGLIH 178
L E+ T++I + LG ++K E+G I + ++HGGAA + G +
Sbjct: 16 ALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLR 75
Query: 179 VGDEVCEVNGINVEGKTPGDVLKILQSS 206
+ D++ VNG + GK+ + ++ L+ S
Sbjct: 76 MNDQLIAVNGETLLGKSNHEAMETLRRS 103
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 65.6 bits (160), Expect = 7e-14
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 124 PQELVDDEEETVKIVQLVKSNEPLGATIK-----TDEESGKIVVARVMHGGAADRSGLIH 178
++V E V + G ++ T+ S +++ + A+R G++
Sbjct: 8 AGQVVHTETTEVVLTA--DPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQ 65
Query: 179 VGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
+GD V +NGI E T + ++L+ S T L
Sbjct: 66 IGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTL 101
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 64.7 bits (158), Expect = 7e-14
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 131 EEETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGIN 190
+ V +V NE G + + I V + A R G I GD V ++NG
Sbjct: 2 KPTKVTLV-KSAKNEEYGLRL-----ASHIFVKEISQDSLAARDGNIQEGDVVLKINGTV 55
Query: 191 VEGKTPGDVLKILQSSEGTITFKL 214
E + D +++ S+G + +
Sbjct: 56 TENMSLTDAKTLIERSKGKLKMVV 79
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 65.4 bits (160), Expect = 7e-14
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 138 VQLVKSNEPLGATIKTDEESGK----IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
+QL K E LG +I + + + I V ++ GAA + G + GD + EVNG+++ G
Sbjct: 15 IQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAG 74
Query: 194 KTPGDVLKILQSSEGTITFKLI 215
K+ +V+ +L+S++ T L+
Sbjct: 75 KSQEEVVSLLRSTKMEGTVSLL 96
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 65.5 bits (160), Expect = 9e-14
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 129 DDEEETVKIVQLVKSNEPLGATIK------TDEESGKIVVARVMHGGAADRSGLIHVGDE 182
ET + + K + LG I E+ I V V+ G AA +G I V D+
Sbjct: 11 SSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDK 70
Query: 183 VCEVNGINVEGKTPGDVLKILQSSEGTITFKLIP 216
+ V+G+N++G DV+++L+++ + L+
Sbjct: 71 IVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVR 104
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 65.1 bits (159), Expect = 9e-14
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 129 DDEEETVKIVQLVKSNEPLGATIK----TDEESGKIVVARVMHGGAADRSGLIHVGDEVC 184
D +E + V L K N +G +I ++ I V V+ GGAAD G + GD++
Sbjct: 6 DHKEPEIITVTLKKQNG-MGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLL 64
Query: 185 EVNGINVEGKTPGDVLKILQSSEGTITFKL 214
V+G ++ G + +++ + +T ++
Sbjct: 65 SVDGRSLVGLSQERAAELMTRTSSVVTLEV 94
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 65.6 bits (160), Expect = 1e-13
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Query: 131 EEETVKIVQLVKSNEPLGATIKTDEESGK----IVVARVMHGGAADRSGLIHVGDEVCEV 186
+ S LG + + + + +V G AD G + GDEV E
Sbjct: 34 NKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEW 93
Query: 187 NGINVEGKTPGDVLKILQSSEGTITFKLI 215
NG ++G T +V I+ S+ +L+
Sbjct: 94 NGRLLQGATFEEVYNIILESKPEPQVELV 122
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 64.8 bits (158), Expect = 1e-13
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 140 LVKSNEPLGATIK--TDEESGK----IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
S LG I + +A+++ GG+A+++G + G +V E NGI +
Sbjct: 25 HTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTS 84
Query: 194 KTPGDVLKILQSSEGTITFKL 214
KT +V I+ G +
Sbjct: 85 KTYEEVQSIISQQSGEAEICV 105
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 64.7 bits (158), Expect = 1e-13
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 129 DDEEETVKIVQLVKSNEPLGATIK--------TDEESGKIVVARVMHGGAADRSGLIHVG 180
EE + +++ LG +I ++ G I ++RV G A R+G+ VG
Sbjct: 10 ARIEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEG-IFISRVSEEGPAARAGV-RVG 67
Query: 181 DEVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
D++ EVNG+ ++G + ++ L+ + + ++
Sbjct: 68 DKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 101
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 64.7 bits (158), Expect = 1e-13
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 138 VQLVKSNEPLGATIKTDEESGK----IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
+QL K E LG +I + + + I V ++ GAA + G + GD + EVNG+++ G
Sbjct: 34 IQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVG 93
Query: 194 KTPGDVLKILQSSEGTITFKLI 215
K+ +V+ +L+S++ T L+
Sbjct: 94 KSQEEVVSLLRSTKMEGTVSLL 115
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 68.5 bits (166), Expect = 2e-13
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 122 EIPQELVDDEEETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGD 181
++ +V T +++ LG +++ ++ +M GG A+R G+ VG
Sbjct: 285 QVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQ------NGIICSLMRGGIAERGGV-RVGH 337
Query: 182 EVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPA 217
+ E+NG +V +++ L +S G I K +PA
Sbjct: 338 RIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPA 373
Score = 56.1 bits (134), Expect = 3e-09
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 144 NEPLGATIKT---DEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVL 200
E LG + +++A +M+GG A RSG + +GD++ +NG ++ G
Sbjct: 215 GEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQ 274
Query: 201 KILQSSEGTITFKL 214
I++ + KL
Sbjct: 275 GIIKGLKNQTQVKL 288
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 63.9 bits (156), Expect = 2e-13
Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 135 VKIVQLVK-SNEPLGATIK----------TDEESGKIVVARVMHGGAADRSGLIHVGDEV 183
+ V+L + ++ LG +I E I + V+ A ++G + GD +
Sbjct: 5 PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRI 64
Query: 184 CEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
EV+G+++ + ++ ++ + + F +
Sbjct: 65 VEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 95
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 63.9 bits (156), Expect = 2e-13
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 131 EEETVKIVQLVKSNEPLGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEVNGI 189
E V + + K++E LG +I+ E G I V+ V G A++ GL VGD++ VN
Sbjct: 8 EVRLVSL-RRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGL-RVGDQILRVNDK 65
Query: 190 NVEGKTPGDVLKILQSSEGTIT 211
++ T + +K L+ S+ +
Sbjct: 66 SLARVTHAEAVKALKGSKKLVL 87
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 63.0 bits (154), Expect = 2e-13
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 135 VKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGK 194
V+ V++ + G T+ V++ VM G AD GL GD++ VN INV+
Sbjct: 3 VRSVEVARGRAGYGFTLSGQAP---CVLSCVMRGSPADFVGL-RAGDQILAVNEINVKKA 58
Query: 195 TPGDVLKILQSSEGTITFKLIP 216
+ DV+K++ G + +
Sbjct: 59 SHEDVVKLIGKCSGVLHMVIAE 80
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 63.9 bits (156), Expect = 3e-13
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 118 PRLPEIPQELVDD-EEETVKIVQLVK-SNEPLGATIK--TDEESGK--IVVARVMHGGAA 171
P E Q + + + V++ +L+K + LG ++ E G+ I V + G A
Sbjct: 3 PACDEFDQLIKNMAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVA 62
Query: 172 DRSGLIHVGDEVCEVNGINV-EGKTPGDVLKILQSSEGTITFKL 214
R G + D++ +NG + + T + ILQ ++ T+ +
Sbjct: 63 HRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVI 106
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 67.6 bits (164), Expect = 3e-13
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
VR + Y A+ + +P +SF D LHV + + W
Sbjct: 41 VRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDW 80
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 63.6 bits (155), Expect = 3e-13
Identities = 17/105 (16%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
Query: 121 PEIPQELVDDEEETVKIVQLVK-SNEPLGATIK----------TDEESGKIVVARVMHGG 169
++ E + + + V+L + ++ LG +I E I + V+
Sbjct: 11 VDLGTENLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDS 70
Query: 170 AADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
A ++G + GD + EV+G+++ + ++ ++ + + F +
Sbjct: 71 PAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 115
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 62.8 bits (153), Expect = 4e-13
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 132 EETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINV 191
+ + I Q + G TIK D I VA V G A+ S L V DE+ +N
Sbjct: 4 DMRISINQTPGKSLDFGFTIKWDIP--GIFVASVEAGSPAEFSQL-QVDDEIIAINNTKF 60
Query: 192 EGKTPGDVLKILQSSEGTITFKL 214
+ + + ++ T +
Sbjct: 61 SYNDSKEWEEAMAKAQETGHLVM 83
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 63.1 bits (154), Expect = 4e-13
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 135 VKIVQLVKSNEPLGATIK------TDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNG 188
+ + L + N LG +I + I + +++ GGAA G + V D V VN
Sbjct: 5 YEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNE 64
Query: 189 INVEGKTPGDVLKILQSSEGTITFKL 214
++V ++ L+ + + +
Sbjct: 65 VDVSEVVHSRAVEALKEAGPVVRLVV 90
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 63.7 bits (155), Expect = 4e-13
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Query: 131 EEETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGIN 190
++K+V+ K + +G + + G I VA V+ A + GL GD++ VN ++
Sbjct: 26 LRPSMKLVKFRKG-DSVGLRLAGGNDVG-IFVAGVLEDSPAAKEGL-EEGDQILRVNNVD 82
Query: 191 VEGKTPGDVLKILQSSEGTITFKLIPADNKLGYRESK 227
+ + L ++ K YR
Sbjct: 83 FTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIV 119
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 63.3 bits (154), Expect = 4e-13
Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 121 PEIPQELVDDEEETVKIVQLVK-SNEPLGATIKTDEESGK-IVVARVMHGGAADRS-GLI 177
PE P + + ++++ N G +K + ++V+RV G AD +
Sbjct: 4 PEKPTPNGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRL 63
Query: 178 HVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLI 215
+ GD+V +NG ++ T V+ +++S + +L+
Sbjct: 64 NEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELM 101
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 62.7 bits (153), Expect = 5e-13
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 138 VQLVKSNEPLGATIK-----TDEESGK--IVVARVMHGGAADRSGLIHVGDEVCEVNGIN 190
+ +++ LG +I T + I ++RV G A R+G+ VGD++ EVNG+
Sbjct: 7 LTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGV-RVGDKLLEVNGVA 65
Query: 191 VEGKTPGDVLKILQSSEGTITFKL 214
++G + ++ L+ + + ++
Sbjct: 66 LQGAEHHEAVEALRGAGTAVQMRV 89
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 62.0 bits (151), Expect = 8e-13
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 130 DEEETVKIVQLVKS-NEPLGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEVN 187
+ + V++ KS LG +++ E G I V++V G +A+R+GL VGD++ EVN
Sbjct: 6 SGSDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGL-CVGDKITEVN 64
Query: 188 GINVEGKTPGDVLKILQSS 206
G+++E T G +K+L SS
Sbjct: 65 GLSLESTTMGSAVKVLTSS 83
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 61.7 bits (150), Expect = 1e-12
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 129 DDEEETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNG 188
D E + + + + G TI D + V V GG A+R+GL D V ++N
Sbjct: 10 DPENGEKLQITIRRGKDGFGFTICCDSP---VRVQAVDSGGPAERAGL-QQLDTVLQLNE 65
Query: 189 INVEGKTPGDVLKILQSSEGTIT 211
VE ++ ++S I
Sbjct: 66 RPVEHWKCVELAHEIRSCPSEII 88
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 61.3 bits (149), Expect = 1e-12
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 138 VQLVKSNEPLGATIKT--------DEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGI 189
+ + S + G +++ D + VV V G A +GL GD + +NG
Sbjct: 6 IVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGL-RAGDLITHINGE 64
Query: 190 NVEGKTPGDVLKILQSSEGTITFKLIPADN 219
+V G DV+++L S I+ + +N
Sbjct: 65 SVLGLVHMDVVELLLKSGNKISLRTTALEN 94
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 62.1 bits (151), Expect = 2e-12
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 125 QELVDDEEETVKIVQLVKSNEPLGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEV 183
L +E+ V +V LG TI+ E G I + V G A+ SGL VGD++
Sbjct: 14 HLLQGGDEKKVNLVL--GDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGL-KVGDQI 70
Query: 184 CEVNGINVEGKTPGDVLKILQSS 206
EVNG + + +++L+SS
Sbjct: 71 LEVNGRSFLNILHDEAVRLLKSS 93
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 60.8 bits (148), Expect = 2e-12
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 135 VKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGK 194
+ + + + + G TI D + V V GG A+R+GL D V ++N VE
Sbjct: 4 YRQITIPRGKDGFGFTICCDSP---VRVQAVDSGGPAERAGL-QQLDTVLQLNERPVEHW 59
Query: 195 TPGDVLKILQSSEGTITFKLI 215
++ ++S I +
Sbjct: 60 KCVELAHEIRSCPSEIILLVW 80
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 61.3 bits (149), Expect = 2e-12
Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 131 EEETVKIVQLVKSNEPLGATIKTDEESGK---IVVARVMHGGAADRSGLIHVGDEVCEVN 187
+ + V V LG I + + + V+ GG + G + GD++ +N
Sbjct: 11 DRDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSIN 70
Query: 188 GINVEGKTPGDVLKILQSS 206
++ G + + I+ +
Sbjct: 71 KESMIGVSFEEAKSIITRA 89
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 60.9 bits (148), Expect = 3e-12
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 130 DEEETVKIVQLVKSNEPLGATI---KTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEV 186
+ + ++ LG +I + G I + +M GGA G I GD + +V
Sbjct: 2 SHMNIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQV 61
Query: 187 NGINVEGKTPGDVLKILQS---SEGTITFKL 214
N +N E + D +++L+ G I +
Sbjct: 62 NDMNFENMSNDDAVRVLRDIVHKPGPIVLTV 92
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 61.7 bits (150), Expect = 3e-12
Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 135 VKIVQLVK-SNEPLGATIKTDEESGK----IVVARVMHGGAADRSGLIHVGDEVCEVNGI 189
++ + + + S LG ++ I V V G ADR + D++ +N
Sbjct: 26 IEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHT 85
Query: 190 NV-EGKTPGDVLKILQSSEGTITFKL 214
+ + + + +LQ + G++ +
Sbjct: 86 PLDQNISHQQAIALLQQTTGSLRLIV 111
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 60.5 bits (147), Expect = 3e-12
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 129 DDEEETVKIVQLVK-SNEPLGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEV 186
+ + +IV L K LG I+ + S I +++V+ A R+GL GD+V V
Sbjct: 10 ELTQFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGL-QEGDQVLAV 68
Query: 187 NGINVEGKTPGDVLKILQSS-EGTITFKLIPA 217
N ++ + ++IL+++ E ++ +
Sbjct: 69 NDVDFQDIEHSKAVEILKTAREISMRVRFFSG 100
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 61.0 bits (148), Expect = 4e-12
Identities = 18/90 (20%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 129 DDEEETVKIVQLVK-SNEPLGATIKTDEESGK-IVVARVMHGGAADRS-GLIHVGDEVCE 185
+ + ++++ N G +K + ++V+RV G AD ++ GD+V
Sbjct: 10 GIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVL 69
Query: 186 VNGINVEGKTPGDVLKILQSSEGTITFKLI 215
+NG ++ T V+ +++S + +L+
Sbjct: 70 INGRDIAEHTHDQVVLFIKASCERHSGELM 99
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 59.8 bits (145), Expect = 7e-12
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 124 PQELVDDEEETVKIVQLVKSNEPLGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDE 182
+++E+ V I + + LG +I + I ++ V G + GL +GD+
Sbjct: 8 SPGNRENKEKKVFIS--LVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGL-EIGDQ 64
Query: 183 VCEVNGINVEGKTPGDVLKILQSS 206
+ EVNG++ + + +L+SS
Sbjct: 65 IVEVNGVDFSNLDHKEAVNVLKSS 88
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 59.3 bits (144), Expect = 8e-12
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
Query: 131 EEETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGIN 190
E V + E G ++ + V + G D GL D + +VN +
Sbjct: 6 ELHKVTL-YKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGL-KPYDRLLQVNHVR 63
Query: 191 VEGKTPGDVLKILQSSEGTITF 212
V+ ++ S +
Sbjct: 64 TRDFDCCLVVPLIAESGNKLDL 85
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 62.8 bits (152), Expect = 9e-12
Identities = 22/93 (23%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 121 PEIPQELVDDEEETVKIVQLVKSNEPLGATIKTDEESG-KIVVARVMHGGAADRSGLIHV 179
P++P+ L+ + V + + LG +IK E+ I+++++ G AAD++ + V
Sbjct: 68 PQLPEALLL-QRRRVTVRK--ADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFV 124
Query: 180 GDEVCEVNGINVEGKTPGDVLKILQSSEGTITF 212
GD + VNG ++ T + ++ L+ + +
Sbjct: 125 GDAILSVNGEDLSSATHDEAVQALKKTGKEVVL 157
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 58.9 bits (143), Expect = 9e-12
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 136 KIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
+ V + K G T+ D ++V V GGAA ++G+ GD + +VNG V +
Sbjct: 10 RCVIIQKDQHGFGFTVSGDRI---VLVQSVRPGGAAMKAGV-KEGDRIIKVNGTMVTNSS 65
Query: 196 PGDVLKILQSSEGTITFKLIP 216
+V+K+++S + L+
Sbjct: 66 HLEVVKLIKSG-AYVALTLLG 85
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 61.1 bits (148), Expect = 1e-11
Identities = 30/154 (19%), Positives = 68/154 (44%), Gaps = 15/154 (9%)
Query: 68 AMQISLEVLDVLLSRL-------ALNDDCKELFVLLQRPNLQGLLCAHDAVAQKDYYPRL 120
A + +V ++ + L + + V + +L+ ++ + D L
Sbjct: 6 AREFRHKVDFLIENDAEKDYLYDVLRMYHQTMDVAVLVGDLKLVINEPSRLPLFDAIRPL 65
Query: 121 PEIPQELVDD-----EEETVKIVQLVKS-NEPLGATIKTDEESGK-IVVARVMHGGAADR 173
+ ++ D +K V+L + E LG +++ E G + ++ ++ GG AD
Sbjct: 66 IPLKHQVEYDQLTPRRSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADS 125
Query: 174 SGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSE 207
GL VGDE+ +NG ++ T +V+ ++++ +
Sbjct: 126 VGL-QVGDEIVRINGYSISSCTHEEVINLIRTEK 158
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 60.6 bits (147), Expect = 1e-11
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 136 KIVQLVK-SNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGK 194
+ V L K + +G +K+ + I V V A GL GD+V ++NG N G
Sbjct: 6 REVILCKDQDGKIGLRLKSID--NGIFVQLVQANSPASLVGL-RFGDQVLQINGENCAGW 62
Query: 195 TPGDVLKILQSSEGT 209
+ K+L+ + G
Sbjct: 63 SSDKAHKVLKQAFGE 77
Score = 59.1 bits (143), Expect = 4e-11
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 127 LVDDEEETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEV 186
+ D I S +G K + + ++ +A R+GL +CE+
Sbjct: 82 TIRDRPFERTITMHKDSTGHVGFIFKNGKITS------IVKDSSAARNGL-LTEHNICEI 134
Query: 187 NGINVEGKTPGDVLKILQSSEGTITFKLIPA 217
NG NV G + IL +S +T ++PA
Sbjct: 135 NGQNVIGLKDSQIADILSTSGTVVTITIMPA 165
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 58.5 bits (142), Expect = 2e-11
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 129 DDEEETVKIVQLVKSNEPLGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEVN 187
+ V + ++ P G T+K E + + V+++ GG A S + GDE+ +N
Sbjct: 7 GGSFQYVPVQ--LQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNIN 64
Query: 188 GINVEGKTPGDVLKILQSSEGTITFKL 214
G + G + + L +++ S + +
Sbjct: 65 GTPLYG-SRQEALILIKGSFRILKLIV 90
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 58.5 bits (142), Expect = 2e-11
Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 130 DEEETVKIVQLVKSNEPLGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEVNG 188
+ +V + P G + + + +V+ R+ G A + L GD + ++G
Sbjct: 2 SSGSSGNVV--LPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANL-CPGDVILAIDG 58
Query: 189 INVEGKTPGDVLKILQSSEGTITFKL 214
E T D ++++ + K+
Sbjct: 59 FGTESMTHADAQDRIKAASYQLCLKI 84
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 58.4 bits (142), Expect = 2e-11
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Query: 131 EEETVKIVQLVKSNEPLGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEVNGI 189
V L P G + + + ++RV G A + L GD + +NG
Sbjct: 5 SSGMPHSVTLRGP-SPWGFRLVGGRDFSAPLTISRVHAGSKAALAAL-CPGDLIQAINGE 62
Query: 190 NVEGKTPGDVLKILQSSEGTITFKL 214
+ E T + ++ +T +
Sbjct: 63 STELMTHLEAQNRIKGCHDHLTLSV 87
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 58.2 bits (141), Expect = 2e-11
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 136 KIVQLVK-SNEPLGATIKTDEESGK--------IVVARVMHGGAADRSGLIHVGDEVCEV 186
K++ L K N+ G I+T + VARV A +GL GD + V
Sbjct: 6 KVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGL-TPGDTIASV 64
Query: 187 NGINVEGKTPGDVLKILQSSEGTITFKLIP 216
NG+NVEG +++ I+++S + + +
Sbjct: 65 NGLNVEGIRHREIVDIIKASGNVLRLETLY 94
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 58.1 bits (141), Expect = 2e-11
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 129 DDEEETVKIVQLVKSNEPLGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEVN 187
+ + V P G I + I+V +V G A+ + L GD + +N
Sbjct: 2 SSGSSGLTVD--VAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADL-RPGDIIVAIN 58
Query: 188 GINVEGKTPGDVLKILQSSEGTITFKL 214
G + E + ++ S + +L
Sbjct: 59 GQSAENMLHAEAQSKIRQSASPLRLQL 85
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 58.3 bits (141), Expect = 2e-11
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 127 LVDDEEETVKIVQLVKS-NEPLGATIKTDEESGK--------IVVARVMHGGAADRSGLI 177
L D K+V + K NE G I++ + ++ ++ A +GL
Sbjct: 8 LSDFSWSQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGL- 66
Query: 178 HVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLI 215
GD + +NG++ EG T V+ +++SS +T + +
Sbjct: 67 QAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIETL 104
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 59.2 bits (143), Expect = 2e-11
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 142 KSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLK 201
K+ P+ T + V GG A R+GL +GD + EVNG NV V+
Sbjct: 49 KAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGL-RMGDFLIEVNGQNVVKVGHRQVVN 107
Query: 202 ILQSSEGTITFKLIPADNKLGYRES 226
+++ T+ K++ E+
Sbjct: 108 MIRQGGNTLMVKVVMVTRHPDMDEA 132
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 58.5 bits (141), Expect = 3e-11
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 132 EETVKIVQLVKS---NEPLGATIKTDEESG--KIVVARVMHGGAADRSGLIHVGDEVCEV 186
+ + + + KS + G ++ + EE G ++ V V G A + GL GDE+ E+
Sbjct: 13 PKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGL-KAGDEILEI 71
Query: 187 NGINVEGKTPGDVLKILQSSEGTITFKLIPADNK 220
N + + L + + P +
Sbjct: 72 NNRAADALNSSMLKDFLSQPSLGLLVRTYPELEE 105
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 58.3 bits (141), Expect = 3e-11
Identities = 16/81 (19%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 136 KIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT 195
+ ++ LG T++ + + V + +A +G GD + + ++ + T
Sbjct: 25 RSIRFTAEEGDLGFTLRGNAP---VQVHFLDPYCSASVAGA-REGDYIVSIQLVDCKWLT 80
Query: 196 PGDVLKILQSS-EGTITFKLI 215
+V+K+L+S E I K++
Sbjct: 81 LSEVMKLLKSFGEDEIEMKVV 101
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 57.9 bits (140), Expect = 4e-11
Identities = 16/82 (19%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 135 VKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGK 194
+ + LG T++ + + V + +A +G GD + + G++ +
Sbjct: 16 PRGIHFTVEEGDLGFTLRGN---TPVQVHFLDPHCSASLAGA-KEGDYIVSIQGVDCKWL 71
Query: 195 TPGDVLKILQSSEG-TITFKLI 215
T +V+K+L+S G + K++
Sbjct: 72 TVSEVMKLLKSFGGEEVEMKVV 93
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 56.1 bits (136), Expect = 8e-11
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 138 VQLVKSNEPLGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTP 196
V L P G ++ ++ + ++R+ G A +S L GD V ++G+N + T
Sbjct: 5 VTLTGPG-PWGFRLQGGKDFNMPLTISRITPGSKAAQSQL-SQGDLVVAIDGVNTDTMTH 62
Query: 197 GDVLKILQSSEGTITFKL 214
+ ++S+ ++ L
Sbjct: 63 LEAQNKIKSASYNLSLTL 80
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 56.6 bits (137), Expect = 9e-11
Identities = 17/78 (21%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 138 VQLVKSNEPLGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTP 196
V LV P G ++ ++ + ++ + GG A ++ + +GD V ++GI+ +G T
Sbjct: 9 VSLVGPA-PWGFRLQGGKDFNMPLTISSLKDGGKASQAHV-RIGDVVLSIDGISAQGMTH 66
Query: 197 GDVLKILQSSEGTITFKL 214
+ +++ G++ L
Sbjct: 67 LEAQNKIKACTGSLNMTL 84
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 56.4 bits (136), Expect = 1e-10
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 142 KSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLK 201
K+ P+ T + V GG A R+GL +GD + EVNG NV V+
Sbjct: 29 KAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGL-RMGDFLIEVNGQNVVKVGHRQVVN 87
Query: 202 ILQSSEGTITFKLIP 216
+++ T+ K++
Sbjct: 88 MIRQGGNTLMVKVVM 102
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 55.7 bits (135), Expect = 1e-10
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 134 TVKIVQLVKSNEPLGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEVNGINVE 192
++ + V P G I + I+V +V G A + L GD + +NG + E
Sbjct: 1 SMALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADL-RPGDIIVAINGESAE 59
Query: 193 GKTPGDVLKILQSSEGTITFKL 214
G + ++ S + +L
Sbjct: 60 GMLHAEAQSKIRQSPSPLRLQL 81
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 56.3 bits (136), Expect = 2e-10
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Query: 124 PQELVDDEEETVKIVQLVKSNEPLGATIKTDEESGK-------IVVARVMHGGAADRSGL 176
E V E+ TV + + S G + ++ IV++ V+ GG AD GL
Sbjct: 7 GMEEVIWEQYTVTLQK--DSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GL 62
Query: 177 IHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
+ D V VNG +E ++ L+ S +
Sbjct: 63 LQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVV 100
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 55.0 bits (133), Expect = 2e-10
Identities = 17/83 (20%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 133 ETVKIVQLVKSNEPLGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEVNGINV 191
++ K+V ++ P G ++ ++ + ++R+ GG A ++G+ VGD V ++G N
Sbjct: 3 DSFKVV--LEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGV-AVGDWVLSIDGENA 59
Query: 192 EGKTPGDVLKILQSSEGTITFKL 214
T + +++ ++ L
Sbjct: 60 GSLTHIEAQNKIRACGERLSLGL 82
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 55.1 bits (133), Expect = 3e-10
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 131 EEETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGIN 190
TVKI + G I ES + V V GG+A G + GD++ ++N
Sbjct: 8 VRHTVKI-DKDTLLQDYGFHI---SESLPLTVVAVTAGGSAH--GKLFPGDQILQMNNEP 61
Query: 191 VEGKTPGDVLKILQSSEGTIT 211
E + + IL+ +E +++
Sbjct: 62 AEDLSWERAVDILREAEDSLS 82
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 55.1 bits (133), Expect = 4e-10
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 131 EEETVKIVQLVKSNEPLGATIK--TDEESGK-----IVVARVMHGGAADRSGLIHVGDEV 183
E+ TV + + G I D + IV++ V+ GG A+ G + D V
Sbjct: 7 EQHTVTLHR--APGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRV 62
Query: 184 CEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
VNG++++ ++ L+ S +
Sbjct: 63 AMVNGVSMDNVEHAFAVQQLRKSGKNAKITI 93
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 54.6 bits (132), Expect = 4e-10
Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 146 PLGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQ 204
P G ++ ++ + ++ + GG A ++ + +GD V ++GIN +G T + ++
Sbjct: 14 PWGFRLQGGKDFNMPLTISSLKDGGKAAQANV-RIGDVVLSIDGINAQGMTHLEAQNKIK 72
Query: 205 SSEGTITFKL 214
G++ L
Sbjct: 73 GCTGSLNMTL 82
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 53.4 bits (129), Expect = 1e-09
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 138 VQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPG 197
V +VK G TI G V ++ + GL GD + EVN NV+ T
Sbjct: 7 VHIVKGPMGFGFTIADSPGGGGQRVKQI--VDSPRSRGL-KEGDLIVEVNKKNVQALTHN 63
Query: 198 DVLKILQSSEGTITFKLI 215
V+ +L S L+
Sbjct: 64 QVVDMLVESPKGSEVTLL 81
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 56.8 bits (136), Expect = 1e-09
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+R HF+ + P +GL F +GD+ HV+
Sbjct: 7 IRTHFELE-------PSPPSGLGFTRGDVFHVLDTLHPGP 39
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 54.1 bits (130), Expect = 1e-09
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 125 QELVDDEEETVKIVQLVK--SNEPLGATI---KTDEESGKIVVARVMHGGAADRSGLIHV 179
+ +D EE ++ V L + S + LG T+ DE+ I ++ + A + G I
Sbjct: 10 HQEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIRE 69
Query: 180 GDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLI 215
GD + ++NGI V+ + + + +L S E LI
Sbjct: 70 GDRIIQINGIEVQNRE--EAVALLTSEENKNFSLLI 103
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 53.2 bits (128), Expect = 1e-09
Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 131 EEETVKIVQLVKSNEPLGATIK---------TDEESGKIVVARVMHGGAADRSGLIHVGD 181
++ +++ V+ + LG +I + I V RV G A L+ GD
Sbjct: 9 AKQEIRVR--VEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGD 64
Query: 182 EVCEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
++ + NG + G + +L++ + T+ +
Sbjct: 65 KIIQANGYSFINIEHGQAVSLLKTFQNTVELII 97
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 52.7 bits (127), Expect = 2e-09
Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 134 TVKIVQLVKSNEPLGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEVNGINVE 192
T + + L P G + ++ + + ++RV G A + L +GD + ++G N
Sbjct: 3 TTQQIDLQGP-GPWGFRLVGGKDFEQPLAISRVTPGSKAALANL-CIGDVITAIDGENTS 60
Query: 193 GKTPGDVLKILQSSEGTITFKL 214
T + ++ +T +
Sbjct: 61 NMTHLEAQNRIKGCTDNLTLTV 82
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 52.0 bits (125), Expect = 3e-09
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 13/91 (14%)
Query: 133 ETVKIVQLVKSNEPLGATIK---------TDEESGKIVVARVMHGGAADRSGLIHVGDEV 183
+++ V+ + LG +I + I V RV G A L+ GD++
Sbjct: 3 MEIRVR--VEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKI 58
Query: 184 CEVNGINVEGKTPGDVLKILQSSEGTITFKL 214
+ NG + G + +L++ + T+ +
Sbjct: 59 IQANGYSFINIEHGQAVSLLKTFQNTVELII 89
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 52.7 bits (126), Expect = 5e-09
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 142 KSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLK 201
+P D+ I V RV GG A+ +GL +GD++ +VNG ++ T K
Sbjct: 48 IDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGL-QIGDKIMQVNGWDMTMVTHDQARK 106
Query: 202 ILQSSEGTITFKLI 215
L + L+
Sbjct: 107 RLTKRSEEVVRLLV 120
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 50.0 bits (119), Expect = 2e-08
Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 133 ETVKIVQLVK---SNEPLGATIKTDEESGK--IVVARVMHGGAADRSGLIHVGDEVCEVN 187
+ + + K + + G ++ + EE G + V V G A + GL GDE+ E+N
Sbjct: 5 KVTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLK-AGDEILEIN 63
Query: 188 GINVEGKTPGDVLKILQSSEGTITFKLIP 216
+ + L + + P
Sbjct: 64 NRAADALNSSMLKDFLSQPSLGLLVRTYP 92
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 48.3 bits (115), Expect = 1e-07
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 135 VKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGK 194
+ + L+K + G I D +G+ +V + + GD + E+ NV+
Sbjct: 13 LVTIPLIKGPKGFGFAI-ADSPTGQ----KVKMILDSQWCQGLQKGDIIKEIYHQNVQNL 67
Query: 195 TPGDVLKILQSSEGTITFKLI 215
T V+++L+ L+
Sbjct: 68 THLQVVEVLKQFPVGADVPLL 88
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 47.4 bits (113), Expect = 1e-07
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 135 VKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGK 194
+ + +VK + G TI D +G+ V + G + GD + E+N NV+
Sbjct: 11 LMTLTIVKGAQGFGFTI-ADSPTGQRVKQILDIQGCPG----LCEGDLIVEINQQNVQNL 65
Query: 195 TPGDVLKILQSSEGTITFKLI 215
+ +V+ IL+ LI
Sbjct: 66 SHTEVVDILKDCPIGSETSLI 86
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 44.1 bits (105), Expect = 1e-06
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Query: 222 GYRESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
G S++ VRA F++ +++ D LSF+KGD++HV ++ W
Sbjct: 1 GSANSQLVVRAKFNFQQTNE------DE-LSFSKGDVIHVTRVEEGGW 41
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain,
scaffold protein, protein assembly, cell polarity,
transport protein; NMR {Mus musculus} SCOP: a.194.1.1
PDB: 1zl8_B
Length = 50
Score = 43.8 bits (103), Expect = 1e-06
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 68 AMQISLEVLDVLLSRLALNDDCKELFVLLQRPNLQGLLCAHDAVAQKDY 116
A+Q + EVL+ +S N+D KEL +L +P+ LL HD VA + Y
Sbjct: 1 AVQRAKEVLE-EISCYPENNDAKELKRILTQPHFMALLQTHDVVAHEVY 48
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 43.0 bits (102), Expect = 2e-06
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
K V+A FDY A + D L+F K I+ V + D W
Sbjct: 2 FKSAVKALFDYKAQRE------DE-LTFTKSAIIQNVEKQDGGW 38
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 43.5 bits (103), Expect = 3e-06
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDD 266
S R+ A +DYD +A L+F GDI+ V + D
Sbjct: 6 SGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEID 46
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 43.1 bits (102), Expect = 3e-06
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 222 GYRESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDD 266
G K +V+ F + A S+ LSF +GD++ ++ ++
Sbjct: 1 GSHMKKQKVKTIFPHTAGSN------KTLLSFAQGDVITLLIPEE 39
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 42.5 bits (101), Expect = 3e-06
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 227 KIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
I+V+A +DYDA + D L+F +GD + V +D A W
Sbjct: 3 GIQVKALYDYDAQTG------DE-LTFKEGDTIIVHQKDPAGW 38
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 43.1 bits (102), Expect = 3e-06
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 228 IRVRAHFDYDASSDPYIPCKDAG-LSFNKGDILHVVSQDDAYW 269
+ +A + YDA D DA +SF + +IL V + +W
Sbjct: 6 YKAKALYPYDADDD------DAYEISFEQNEILQVSDIEGRWW 42
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 42.7 bits (101), Expect = 4e-06
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
K V+A FDY A + D L+F K I+ V + + W
Sbjct: 5 FKCAVKALFDYKAQRE------DE-LTFIKSAIIQNVEKQEGGW 41
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 43.1 bits (102), Expect = 4e-06
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 225 ESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
E + A F Y + ++ LSF +GD+L + + + W
Sbjct: 8 EGVVEAVACFAYTGRTA-----QE--LSFRRGDVLRLHERASSDW 45
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 4e-06
Identities = 51/275 (18%), Positives = 96/275 (34%), Gaps = 98/275 (35%)
Query: 6 KEEFDISVSSLLETLQESQSTFSANDE-----ELL-----FLSSLLQSKELNALVHVHNS 55
+E+F + L E F+A+DE EL+ ++SSL++ ++ V N
Sbjct: 34 QEQF-------NKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNL 86
Query: 56 IVNEQSHPVLSNAMQISLEVLDV--LLSRLALNDD-----CKELF-------VLLQRPNL 101
+ E + L D+ L ++L +D KEL ++ +RP
Sbjct: 87 CLTEFENCYLEGN--------DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 102 QG----LLCAHDA-----VAQ-------KDYYPRLPEI---PQELVDD--EEETVKIVQL 140
+ L A VA DY+ L ++ LV D + + +L
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 141 VKSNE------PLGATIK---TDEESGKIVVARVMHGGAADRSGLIHVGDEV-CEVNGI- 189
+++ G I + + D+ L+ + + C + G+
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSN------------TPDKDYLLSI--PISCPLIGVI 244
Query: 190 ---------NVEGKTPGDVLKILQS----SEGTIT 211
+ G TPG++ L+ S+G +T
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Score = 38.9 bits (90), Expect = 0.002
Identities = 47/291 (16%), Positives = 92/291 (31%), Gaps = 97/291 (33%)
Query: 2 TSNEKEEFDISVSSLLETL----QESQSTFS-------------ANDEE----LLFLSSL 40
++ E F +SV + L + N+E +L +S+L
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 41 ----LQS--KELNALV----HVHNSIVNEQSHPVLSNAMQISLEVLDVLLSRL---ALND 87
+Q + N+ + V S+VN + V+S Q SL L++ L + + D
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ-SLYGLNLTLRKAKAPSGLD 403
Query: 88 DCKELFVLLQR-PNLQG------------LLCAHDAVAQKDYYPRLPEIPQELVDDEEET 134
+ F +R LL A I ++LV +
Sbjct: 404 QSRIPF--SERKLKFSNRFLPVASPFHSHLL--VPASDL---------INKDLVKNNVS- 449
Query: 135 VKIVQL---VKSNEPLGATIKTDEESGK------IVVARVMHGGAADRSGLIHV-----G 180
+ V G+ ++ S I+ V + H+ G
Sbjct: 450 FNAKDIQIPVYDTFD-GSDLRVLSGSISERIVDCIIRLPV-KWETTTQFKATHILDFGPG 507
Query: 181 DEVCEVNGI------NVEGKTPGDVLKILQSSEGTITFKLIPADNKLGYRE 225
+G+ N +G G ++++ + T + P D+ G+++
Sbjct: 508 ----GASGLGVLTHRNKDGT--G--VRVIVAG----TLDINPDDD-YGFKQ 545
Score = 28.5 bits (63), Expect = 3.3
Identities = 26/175 (14%), Positives = 55/175 (31%), Gaps = 56/175 (32%)
Query: 113 QKDYYPRLPEIPQELVDDEEETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAAD 172
Q+ + LPE + D+E T + L V + +
Sbjct: 34 QEQFNKILPEPTEGFAADDEPT--------TPAEL--------------VGKFLG----- 66
Query: 173 RSGLIHVGDEVCEVNGINVEGKTPGDVLK---------ILQSSE-GTITFKLIPADNKLG 222
+V V E + + VL L+ ++ + KL +N
Sbjct: 67 -----YVSSLV-EPS----KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL-LQENDTT 115
Query: 223 YRESKIRVRAHFD-YDASSDPYIPCKDAGL--SFNKGDI-LHVV--SQ--DDAYW 269
++K ++ + + P+ ++ L + +G+ L + Q D Y+
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF 170
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 42.2 bits (100), Expect = 4e-06
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
A +D+ S P + L KGD++++ ++ + W
Sbjct: 2 MFEAAYDFPGSGSP------SELPLKKGDVIYITREEPSGW 36
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 43.3 bits (102), Expect = 5e-06
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 229 RVRAHFDYDASSD-PYIPCKDAGLSFNKGDILHVVSQDDAYW 269
A FDYD + P + L F +G I+ V DA
Sbjct: 19 IFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADG 60
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 42.4 bits (100), Expect = 6e-06
Identities = 9/38 (23%), Positives = 13/38 (34%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDD 266
+ A DYD L+ GD++ V D
Sbjct: 9 IMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMD 46
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 42.3 bits (100), Expect = 6e-06
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
++ +A + A D + L+F+K DI+ V+ Q + +W
Sbjct: 9 ENLKAQALCSWTAKKD------NH-LNFSKHDIITVLEQQENWW 45
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 41.8 bits (99), Expect = 6e-06
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
S A FDY S ++ LSF KG L + + W
Sbjct: 5 SPEFAIAKFDYVGRSA-----RE--LSFKKGASLLLYHRASEDW 41
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 43.3 bits (101), Expect = 8e-06
Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 6/87 (6%)
Query: 134 TVKIVQLVKS-NEPLGATIKTDE-ESGKIVVARVMH----GGAADRSGLIHVGDEVCEVN 187
+V ++ + + G ++ + S +V + + IH GD + E+N
Sbjct: 15 SVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEIN 74
Query: 188 GINVEGKTPGDVLKILQSSEGTITFKL 214
G V +V ++ + T+ +
Sbjct: 75 GTPVRTLRVEEVEDAIKQTSQTLQLLI 101
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 41.9 bits (99), Expect = 8e-06
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 225 ESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
S V+A +DY A D L+F +G ++H VS++ W
Sbjct: 5 SSGRTVKALYDYKAKRS------DE-LTFCRGALIHNVSKEPGGW 42
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 41.9 bits (99), Expect = 9e-06
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
++ V+A F++ +++ D LS KGDI++V ++ W
Sbjct: 9 HQLIVKARFNFKQTNE------DE-LSVCKGDIIYVTRVEEGGW 45
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 42.2 bits (99), Expect = 9e-06
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 225 ESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
++VRA D+ DP L+ GD++ V+ Q
Sbjct: 16 RGSLKVRALKDFWNLHDP------TALNVRAGDVITVLEQHPDGR 54
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 41.9 bits (99), Expect = 1e-05
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
S R +A D++ D D L F K DI+ ++SQ D +
Sbjct: 6 SGRRAKALLDFERHDD------DE-LGFRKNDIITIISQKDEHC 42
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 42.0 bits (99), Expect = 1e-05
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 227 KIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
K V A +DY S ++ ++ KGDIL +++ + W
Sbjct: 2 KELVLALYDYQEKSP-----RE--VTMKKGDILTLLNSTNKDW 37
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 41.0 bits (97), Expect = 1e-05
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
VRA FD++ + + +D L F KGDIL + + + W
Sbjct: 3 YVRALFDFNGNDE-----ED--LPFKKGDILRIRDKPEEQW 36
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 41.5 bits (98), Expect = 1e-05
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 224 RESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
R + R A FD+ +S + L+F GD++ ++S+ + W
Sbjct: 15 RMAAPRAEALFDFTGNSK-----LE--LNFKAGDVIFLLSRINKDW 53
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 41.1 bits (97), Expect = 1e-05
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
VRA F++ +++ D LSF+KGD++HV ++ W
Sbjct: 6 VVRAKFNFQQTNE------DE-LSFSKGDVIHVTRVEEGGW 39
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 41.6 bits (98), Expect = 1e-05
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
S +A + + A D D L+ KGDI+ + + + W
Sbjct: 6 SGRLCKALYSFQARQD------DE-LNLEKGDIVIIHEKKEEGW 42
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 40.6 bits (96), Expect = 1e-05
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ +A + YDA D LSFN DI+ ++ +D + W
Sbjct: 4 GSPQCKALYAYDAQDT------DE-LSFNANDIIDIIKEDPSGW 40
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 41.1 bits (97), Expect = 1e-05
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
S R +A +Y + D L FNKGD++ + Q D W
Sbjct: 6 SGPRAKALCNYRGKNP-----GD--LKFNKGDVILLRRQLDENW 42
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 40.6 bits (96), Expect = 2e-05
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 228 IRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ FDY A D D L+ + G+I+ + ++D W
Sbjct: 2 VEAIVEFDYQAQHD------DE-LTISVGEIITNIRKEDGGW 36
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 40.9 bits (96), Expect = 2e-05
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
K V A +DY S ++ ++ KGDIL +++ + W
Sbjct: 20 GKELVLALYDYQEKSP-----RE--VTMKKGDILTLLNSTNKDW 56
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 40.8 bits (96), Expect = 2e-05
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
K V A +DY S ++ ++ KGDIL +++ + W
Sbjct: 4 GKELVLALYDYQEKSP-----RE--VTMKKGDILTLLNSTNKDW 40
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 41.2 bits (97), Expect = 2e-05
Identities = 9/45 (20%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 225 ESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+S + A +D+ ++ ++ L+F GD++ V+ + W
Sbjct: 8 DSIVSAEAVWDHVTMAN-----RE--LAFKAGDVIKVLDASNKDW 45
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 43.4 bits (101), Expect = 2e-05
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Query: 160 IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPADN 219
I V RV G A L+ GD++ + NG + G + +L++ + T+ ++
Sbjct: 26 IFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREVG 83
Query: 220 KLGYRESKIRVRAHFDYDASSDPYIPCKD 248
+E ++RV S +
Sbjct: 84 NGAKQEIRVRVEKDGGSGGVSSVPTNLEV 112
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 40.7 bits (96), Expect = 2e-05
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
S RA + ++ + D L F +GDI+++ D W
Sbjct: 6 SGKVFRALYTFEPRTP------DE-LYFEEGDIIYITDMSDTNW 42
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 40.4 bits (95), Expect = 2e-05
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+V A F Y + + D L+F K + V S +DA W
Sbjct: 9 KVVAQFPYKSDYE-----DD--LNFEKDQEIIVTSVEDAEW 42
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 40.3 bits (95), Expect = 2e-05
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
S VRA FD++ + + +D L F KGDIL + + + W
Sbjct: 2 SAEYVRALFDFNGNDE-----ED--LPFKKGDILRIRDKPEEQW 38
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 2e-05
Identities = 49/311 (15%), Positives = 104/311 (33%), Gaps = 96/311 (30%)
Query: 5 EKEEFDISVSSLLETLQES-QSTFSAND-EELLFLSSLLQSKELNALVHVHNSIVNEQSH 62
E E +L +++ F D ++ S+L +E++ I+
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQD--MPKSILSKEEID-------HIIMS--- 57
Query: 63 PVLSNAMQISLEVLDVLLSRLALNDDCKELFVLLQRPNLQGLLCAHDAVAQKDY------ 116
+A+ +L + LLS+ ++ + FV + V + +Y
Sbjct: 58 ---KDAVSGTLRLFWTLLSK---QEEMVQKFV--------------EEVLRINYKFLMSP 97
Query: 117 ---YPRLPEIPQEL-VDDEEETVKIVQL-----VKSNEP---LGATIKTDEESGKIVVAR 164
R P + + ++ + Q+ V +P L + + +++
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-- 155
Query: 165 VMHG----G----AAD--RSGLIHVGDEVCEVNG----INV-EGKTPGDVLKILQSSEGT 209
G G A D S + C+++ +N+ +P VL++LQ
Sbjct: 156 --DGVLGSGKTWVALDVCLSYKVQ-----CKMDFKIFWLNLKNCNSPETVLEMLQ----K 204
Query: 210 ITFKLIPADNKLGYRESKIRVRAHFDYDASSD-----PYIPC-------KDAGL--SFNK 255
+ +++ P S I++R H PY C ++A +FN
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 256 G-DILHVVSQD 265
IL + ++
Sbjct: 265 SCKIL-LTTRF 274
Score = 39.1 bits (90), Expect = 0.001
Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 56/172 (32%)
Query: 1 MTSNEKEEFDISVSSLLET---LQESQSTFSANDEELLFLSSL-LQSKELNALVHVHN-- 54
+T+ K+ D +S+ T L T + ++ + L L L + ++L V N
Sbjct: 270 LTTRFKQVTD-FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 55 --SIVNE--QSHPV------------LSNAMQISLEVLDVLLSRLALNDDCKELFVLLQR 98
SI+ E + L+ ++ SL VL+ + +++F L
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE--------PAEYRKMFDRL-- 378
Query: 99 PNLQGLLCAHDAVAQKDYYPRLPEIPQELV------DDEEETVKIV-QLVKS 143
+V + IP L+ + + + +V +L K
Sbjct: 379 -----------SVFPPSAH-----IPTILLSLIWFDVIKSDVMVVVNKLHKY 414
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 40.4 bits (95), Expect = 2e-05
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
I A FDY + ++ LSF KG L + + W
Sbjct: 8 EPIEAIAKFDYVGRTA-----RE--LSFKKGASLLLYQRASDDW 44
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 40.7 bits (96), Expect = 2e-05
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
S RA +D++ ++ L F +GDI+ + +Q D W
Sbjct: 6 SGPCCRALYDFEPENE-------GELGFKEGDIITLTNQIDENW 42
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 40.3 bits (95), Expect = 3e-05
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
A DY A+ + LSF +G+ + ++ Q A W
Sbjct: 9 EFVAIADYAATDE-----TQ--LSFLRGEKILILRQTTADW 42
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 40.4 bits (95), Expect = 3e-05
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 225 ESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
++ V A +DY A+ D L+ ++GDI+ V +D+ W
Sbjct: 4 DTAPTVVALYDYTANRS------DE-LTIHRGDIIRVFFKDNEDW 41
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 40.2 bits (95), Expect = 3e-05
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+R A FD+ +S + L+F GD++ ++S+ + W
Sbjct: 3 KHMRAEALFDFTGNSK-----LE--LNFKAGDVIFLLSRINKDW 39
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 40.4 bits (95), Expect = 3e-05
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ +D+ + +D LSF GD+ HV +++ +W
Sbjct: 12 KYVGLWDFKSRTD-------EELSFRAGDVFHVARKEEQWW 45
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 40.4 bits (95), Expect = 3e-05
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 7/45 (15%)
Query: 225 ESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
E RA DY+ S L F + DI+ + +D
Sbjct: 8 EFAKYARALKDYNVSDT-----SL--LPFKRNDIITITFKDQENK 45
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 39.8 bits (94), Expect = 3e-05
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
RA + ++ + D L F +GDI+++ D W
Sbjct: 5 VFRALYTFEPRTP------DE-LYFEEGDIIYITDMSDTNW 38
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 39.9 bits (94), Expect = 3e-05
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 225 ESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ +V A F Y+A+ +D L F +GDI+ V+S+ + W
Sbjct: 3 KKGSQVEALFSYEATQP-----ED--LEFQEGDIILVLSKVNEEW 40
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 40.5 bits (95), Expect = 3e-05
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 225 ESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
K V A +DY S ++ ++ KGDIL +++ + W
Sbjct: 15 TGKELVLALYDYQEKSP-----RE--VTMKKGDILTLLNSTNKDW 52
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 39.9 bits (94), Expect = 4e-05
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
S RA FD+ A + K+ L KGDI+++ Q D W
Sbjct: 6 SGRPARAKFDFKAQTL-----KE--LPLQKGDIVYIYKQIDQNW 42
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 39.9 bits (94), Expect = 4e-05
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
S R + F Y +D D L GDI+ VV + + W
Sbjct: 6 SGRRCQVAFSYLPQND------DE-LELKVGDIIEVVGEVEEGW 42
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 40.0 bits (94), Expect = 4e-05
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
S RVRA Y D D +SF KGD+ V ++ + W
Sbjct: 6 SGRRVRAILPYTKVPDT-----DE-ISFLKGDMFIVHNELEDGW 43
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 40.0 bits (94), Expect = 4e-05
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
RV+ +D A +D D L+F +G+++ V ++D W
Sbjct: 12 RVKTIYDCQADND------DE-LTFIEGEVIIVTGEEDQEW 45
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 39.4 bits (93), Expect = 4e-05
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
V+A FD++ L+F +GD++ ++++DD W
Sbjct: 4 FVQALFDFNPQES-------GELAFKRGDVITLINKDDPNW 37
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 39.5 bits (93), Expect = 4e-05
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 225 ESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
RVRA +D++A +D L+F G+++ V+ DA W
Sbjct: 3 HMARRVRALYDFEAV-------EDNELTFKHGELITVLDDSDANW 40
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 39.6 bits (93), Expect = 5e-05
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ A +D+ S L KGDI+ + + + W
Sbjct: 4 KFEAAYDFPGSGSSS------ELPLKKGDIVFISRDEPSGW 38
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 39.6 bits (93), Expect = 5e-05
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDD 266
S +V+ F + A ++ LSF +GD+L ++ ++
Sbjct: 6 SGQKVKTIFPHTAGNNK------TLLSFAQGDVLTLLIPEE 40
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 39.5 bits (93), Expect = 5e-05
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 225 ESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
K V +DY S ++ L+ KGDIL +++ + W
Sbjct: 4 TGKELVLVLYDYQEKSP-----RE--LTVKKGDILTLLNSTNKDW 41
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 39.5 bits (93), Expect = 5e-05
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
S A F+++ + + +SF KG+ + ++ Q D W
Sbjct: 6 SGGEAIAKFNFNGDTQ-----VE--MSFRKGERITLLRQVDENW 42
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 39.7 bits (93), Expect = 5e-05
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
R R H D+ P L KGDI+ ++S+
Sbjct: 11 RARVHTDFT-----PSPYDTDSLKLKKGDIIDIISKPPMGT 46
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 40.1 bits (94), Expect = 6e-05
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 7/45 (15%)
Query: 225 ESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+V A +DY A+++ D LSF+KG +++V+++DD W
Sbjct: 32 HPVCQVIAMYDYAANNE------DE-LSFSKGQLINVMNKDDPDW 69
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 39.1 bits (92), Expect = 6e-05
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
V+A FD+D +D L F +GD +HV+ D W
Sbjct: 4 YVQALFDFDPQ-------EDGELGFRRGDFIHVMDNSDPNW 37
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 39.2 bits (92), Expect = 7e-05
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDD 266
++RV+A F + A + LSF +GD++ ++ +
Sbjct: 6 GRMRVKAIFSHAAGDN------STLLSFKEGDLITLLVPEA 40
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 39.2 bits (92), Expect = 7e-05
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 224 RESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ +A +D++ +D + L F +GD++ + +Q D W
Sbjct: 10 PLDQPSCKALYDFEPEND-----GE--LGFREGDLITLTNQIDENW 48
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 39.7 bits (93), Expect = 7e-05
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 224 RESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ R + F Y +D D L GDI+ VV + + W
Sbjct: 15 ERRRRRCQVAFSYLPQND------DE-LELKVGDIIEVVGEVEEGW 53
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 39.2 bits (92), Expect = 7e-05
Identities = 5/46 (10%), Positives = 14/46 (30%), Gaps = 5/46 (10%)
Query: 224 RESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ I R ++ L+ G+++ V + +
Sbjct: 3 QNGPIYARVIQKRVPNAY-----DKTALALEVGELVKVTKINVSGQ 43
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 39.4 bits (92), Expect = 7e-05
Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 8/40 (20%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ DY+ + F +G + V+ ++ W
Sbjct: 13 YVSIADYEGDEE--------TAGFQEGVSMEVLERNPNGW 44
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 38.7 bits (91), Expect = 8e-05
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
R FD+ A S K+ L+ KGDI+++ + D W
Sbjct: 3 AARLKFDFQAQSP-----KE--LTLQKGDIVYIHKEVDKNW 36
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 39.1 bits (92), Expect = 8e-05
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
R +D++ + L F +GDI+ + +Q D W
Sbjct: 5 CCRGLYDFEPENQ-------GELGFKEGDIITLTNQIDENW 38
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 39.2 bits (92), Expect = 9e-05
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
A +DY+A ++ D LSF+KG+ +++ + W
Sbjct: 17 LFVALYDYEAITE-----DD--LSFHKGEKFQILNSSEGDW 50
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 38.8 bits (91), Expect = 9e-05
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
A D+ A D L+F KG+IL V+ + W
Sbjct: 12 EYIAVGDFTAQQV-----GD--LTFKKGEILLVIEKKPDGW 45
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 39.3 bits (92), Expect = 9e-05
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+V A +DY K+ LSF +G I++V+ ++D W
Sbjct: 19 KVVAIYDYTKD-------KEDELSFQEGAIIYVIKKNDDGW 52
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 38.8 bits (91), Expect = 1e-04
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
A F+++ + + +SF KG+ + ++ Q D W
Sbjct: 8 EAIAKFNFNGDTQ-----VE--MSFRKGERITLLRQVDENW 41
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 38.3 bits (90), Expect = 1e-04
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
RA +D++A + D L F G+++ V+ + W
Sbjct: 3 WARALYDFEALEE------DE-LGFRSGEVVEVLDSSNPSW 36
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 38.9 bits (91), Expect = 1e-04
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
A FDY A + +D LSF GD L V+ W
Sbjct: 10 FVALFDYQARTA-----ED--LSFRAGDKLQVLDTSHEGW 42
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 38.6 bits (90), Expect = 1e-04
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
RVRA Y D D +SF KGD+ V ++ + W
Sbjct: 7 RVRAILPYTKVPDT-----DE-ISFLKGDMFIVHNELEDGW 41
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 38.8 bits (91), Expect = 1e-04
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 216 PADNKLGYRESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ + ++ +VRA +D++A+ +D L+F G+I+ V+ D W
Sbjct: 6 HHHSHMNHQHEARKVRAIYDFEAA-------EDNELTFKAGEIITVLDDSDPNW 52
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 38.4 bits (90), Expect = 1e-04
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 225 ESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+V A +DY + D L KGD ++ + + W
Sbjct: 6 SELKKVVALYDYMPMNA-----ND--LQLRKGDEYFILEESNLPW 43
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ A + Y+A D D +S + GDI+ V+ DD
Sbjct: 2 AMEAIYAYEAQGD------DE-ISIDPGDIITVIRGDDGSG 35
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 39.0 bits (91), Expect = 1e-04
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 224 RESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ +VRA +D++A D + L+F G+I+ V+ DA W
Sbjct: 14 NKVARKVRALYDFEAVED------NE-LTFKHGEIIIVLDDSDANW 52
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 38.4 bits (90), Expect = 1e-04
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
K + + F+Y ++ D L GDI+ + + + W
Sbjct: 6 KKRQCKVLFEYIPQNE------DE-LELKVGDIIDINEEVEEGW 42
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 38.0 bits (89), Expect = 1e-04
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 225 ESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ I A +DY A+ D D +SF+ DI+ + D W
Sbjct: 7 DLGITAIALYDYQAAGD------DE-ISFDPDDIITNIEMIDDGW 44
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 38.4 bits (90), Expect = 2e-04
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
RA +DY A + D L + GDIL V+ + + W
Sbjct: 10 EYRALYDYTAQNP------DE-LDLSAGDILEVILEGEDGW 43
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 38.0 bits (89), Expect = 2e-04
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
S A + + + + L GDI+ ++ + W
Sbjct: 6 SGNTYVALYKFVPQEN------ED-LEMRPGDIITLLEDSNEDW 42
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 38.5 bits (90), Expect = 2e-04
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 224 RESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ I A +DY A+ D D +SF+ DI+ + D W
Sbjct: 14 NDLGITAVALYDYQAAGD------DE-ISFDPDDIITNIEMIDDGW 52
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 38.0 bits (89), Expect = 2e-04
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
A + Y + D L+F +G+ + V +D +W
Sbjct: 10 EYIALYPYSSVEP-----GD--LTFTEGEEILVTQKDGEWW 43
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 40.8 bits (95), Expect = 2e-04
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 228 IRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ A +D+ A++D + LSF +GDIL V++++
Sbjct: 1 MEAIAKYDFKATAD-----DE--LSFKRGDILKVLNEECDQN 35
Score = 30.4 bits (68), Expect = 0.43
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 242 PYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ P +D L F +GD +HV+ D W
Sbjct: 166 DFDPQEDGELGFRRGDFIHVMDNSDPNW 193
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 38.6 bits (90), Expect = 2e-04
Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Query: 224 RESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
A + + + + LSF KG+ + ++ + + W
Sbjct: 14 VLEYGEAVAQYTFKGDLE-----VE--LSFRKGEHICLIRKVNENW 52
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 38.0 bits (89), Expect = 2e-04
Identities = 7/44 (15%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
S ++++ ++++A + ++ L+ +G+ L V+ +W
Sbjct: 6 SGLKMQVLYEFEARNP-----RE--LTVVQGEKLEVLDHSKRWW 42
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 39.0 bits (91), Expect = 2e-04
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
A +DY+A + +D LSF KG+ +++ + W
Sbjct: 29 IFVALYDYEARTT-----ED--LSFKKGERFQIINNTEGDW 62
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 38.1 bits (89), Expect = 2e-04
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
A +DY+A+ + LSF+KG+ ++ W
Sbjct: 8 LFVALYDYNAT-------RWTDLSFHKGEKFQILEFGPGDW 41
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 37.5 bits (88), Expect = 2e-04
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
V A + +D +D L GD + ++ + W
Sbjct: 4 YVEALYQFDPQ-------QDGDLGLKPGDKVQLLEKLSPEW 37
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 37.7 bits (88), Expect = 3e-04
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 224 RESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDD 266
R + + + Y AS + L+ + ++L V+ D
Sbjct: 10 RNYPLTCKVVYSYKASQP-----DE--LTIEEHEVLEVIEDGD 45
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 37.7 bits (88), Expect = 3e-04
Identities = 6/42 (14%), Positives = 12/42 (28%), Gaps = 5/42 (11%)
Query: 228 IRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ +A + L+ GDI+ V +
Sbjct: 2 VFAKAIQKRVPCAY-----DKTALALEVGDIVKVTRMNINGQ 38
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 38.1 bits (89), Expect = 3e-04
Identities = 6/45 (13%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 225 ESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ V A +DY + ++ L+ + + ++ + +W
Sbjct: 17 PEETVVIALYDYQTNDP-----QE--LALRRNEEYCLLDSSEIHW 54
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 37.2 bits (87), Expect = 3e-04
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 222 GYRESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDD 266
G +K R F Y +++ D L+F +G+I+H++S++
Sbjct: 1 GAMGAKEYCRTLFPYTGTNE------DE-LTFREGEIIHLISKET 38
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 37.2 bits (87), Expect = 3e-04
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ + F+Y ++ D L GDI+ + + + W
Sbjct: 3 QCKVLFEYIPQNE------DE-LELKVGDIIDINEEVEEGW 36
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 37.2 bits (87), Expect = 3e-04
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
V A +D+ A+ D L +G ++ ++D +W
Sbjct: 4 IVVAMYDFQATEA-----HD--LRLERGQEYIILEKNDLHW 37
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 37.7 bits (88), Expect = 3e-04
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 224 RESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDD 266
+ R +D+ A + L+ +G+I+ V + +
Sbjct: 6 SGMATKARVMYDFAAEPG------NNELTVTEGEIITVTNPNV 42
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 37.7 bits (88), Expect = 3e-04
Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+V + A D ++ + D++ V+ Q+D +
Sbjct: 19 QVEITKAFFAKQA------DE-VTLQQADVVLVLQQEDGWL 52
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 37.8 bits (88), Expect = 3e-04
Identities = 6/46 (13%), Positives = 12/46 (26%), Gaps = 5/46 (10%)
Query: 224 RESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ + +A L+ GDI+ V +
Sbjct: 13 QNGPVFAKAIQKRV-----PCAYDKTALALEVGDIVKVTRMNINGQ 53
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 38.0 bits (88), Expect = 4e-04
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
A + Y+ P +A L G L+V D
Sbjct: 19 LCVARYSYNPFDGPN-ENPEAELPLTAGKYLYVYGDMDEDG 58
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 36.9 bits (86), Expect = 4e-04
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
V A +DY S ++ ++ KGDIL +++ + W
Sbjct: 4 VLALYDYQEKSP-----RE--VTMKKGDILTLLNSTNKDW 36
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 37.3 bits (87), Expect = 4e-04
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 10/48 (20%)
Query: 225 ESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQ---DDAYW 269
S + RA +D D L+F++GDIL ++ Q + W
Sbjct: 5 SSGLLARALYDNCPDCS------DE-LAFSRGDILTILEQHVPESEGW 45
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 36.8 bits (86), Expect = 4e-04
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
A +DYDA+ D + L+F + D + + D W
Sbjct: 3 ATAEYDYDAAED------NE-LTFVENDKIINIEFVDDDW 35
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 37.4 bits (87), Expect = 4e-04
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
V A +DY+A +D LSF KGD + V+ + +W
Sbjct: 28 VVALYDYEAIHH-----ED--LSFQKGDQMVVLEESGEWW 60
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 36.8 bits (86), Expect = 4e-04
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+RVRA +DYD + LSF GD L + ++D
Sbjct: 2 KGVRVRALYDYDGQ-------EQDELSFKAGDELTKLGEEDEQG 38
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 37.0 bits (86), Expect = 4e-04
Identities = 8/38 (21%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDD 266
RA +D+ + + ++ KGD++ ++S+ D
Sbjct: 9 FARALYDFVPENP------EMEVALKKGDLMAILSKKD 40
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 37.4 bits (87), Expect = 4e-04
Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 216 PADNKLGYRESKIR-VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
P DN+ ++E + V A +DY + ++ L+ + +++ + +W
Sbjct: 8 PEDNRRSFQEPEETLVIALYDYQTNDP-----QE--LALRCDEEYYLLDSSEIHW 55
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 37.2 bits (87), Expect = 4e-04
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
A Y A + L KG+ + V+ + W
Sbjct: 9 MFVALHTYSAHRP------EE-LDLQKGEGIRVLGKYQDGW 42
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 36.9 bits (86), Expect = 4e-04
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ Y + S D + F KG + V+ ++ W
Sbjct: 10 KYVTVQPYTSQSK------DE-IGFEKGVTVEVIRKNLEGW 43
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 37.3 bits (87), Expect = 4e-04
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
A +DY+A ++ D LSF+KG+ +++ + W
Sbjct: 8 FEALYDYEARTE-----DD--LSFHKGEKFQILNSSEGDW 40
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 36.9 bits (86), Expect = 4e-04
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
Query: 228 IRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDA 267
+ +A +D A S D LSF KGDI+ V+ QD
Sbjct: 4 VLAKALYDNVAESP------DE-LSFRKGDIMTVLEQDTQ 36
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 36.8 bits (86), Expect = 5e-04
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
S V+ +D+ A + + LS K ++L V+ +W
Sbjct: 6 SGKYVKILYDFTARNA-----NE--LSVLKDEVLEVLEDGRQWW 42
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 36.9 bits (86), Expect = 5e-04
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVS-QDDAYW 269
+ A +D+ A++D + LSF +GDIL V++ + D W
Sbjct: 8 GSMEAIAKYDFKATAD-----DE--LSFKRGDILKVLNEECDQNW 45
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 36.4 bits (85), Expect = 5e-04
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 11/47 (23%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAG-LSFNKGDILHVVSQDDAY--W 269
S + A + + +++G L F KGD++ ++ + D+ W
Sbjct: 2 SSPKAVALYSFAG--------EESGDLPFRKGDVITILKKSDSQNDW 40
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 37.5 bits (87), Expect = 5e-04
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 224 RESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDD 266
+ + RA +D+ A SD + +SF GD+L++ ++
Sbjct: 14 EDDHVVARAEYDFVAVSD------EE-ISFRAGDMLNLALKEQ 49
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 37.1 bits (86), Expect = 6e-04
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 225 ESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ + F+Y A + D LS KG + V+ + W
Sbjct: 15 DLNMPAYVKFNYMAERE------DE-LSLIKGTKVIVMEKCSDGW 52
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 36.5 bits (85), Expect = 6e-04
Identities = 6/41 (14%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ +Y + LS G+++ V+ ++++ W
Sbjct: 10 QYVVVSNYKKQEN------SE-LSLQAGEVVDVIEKNESGW 43
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 36.5 bits (85), Expect = 6e-04
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 224 RESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
E V A + YD D LSF KG+ + V+ + +W
Sbjct: 4 EEQGDIVVALYPYDGIHP-----DD--LSFKKGEKMKVLEEHGEWW 42
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 39.9 bits (94), Expect = 6e-04
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 9/103 (8%)
Query: 119 RLPEIPQELVDDEEETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIH 178
L E T + S+ L + I + V+ G A ++GL
Sbjct: 330 TLDTSTSSSASAEMITPALEGATLSDGQL------KDGGKGIKIDEVVKGSPAAQAGL-Q 382
Query: 179 VGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPADNKL 221
D + VN V + ++ K+L + I +++ + +
Sbjct: 383 KDDVIIGVNRDRV--NSIAEMRKVLAAKPAIIALQIVRGNESI 423
Score = 30.7 bits (70), Expect = 0.47
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 161 VVARVMHGGAADRSGLIHVGDEVCEVNGINVE 192
V+ V+ G + ++G + GD + +NG +
Sbjct: 266 FVSEVLPGSGSAKAG-VKAGDIITSLNGKPLN 296
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 36.5 bits (85), Expect = 6e-04
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
V A Y+ S D D L F KG+ L ++ Q +W
Sbjct: 8 LVIALHSYEPSHD-----GD--LGFEKGEQLRILEQSGEWW 41
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 36.5 bits (85), Expect = 6e-04
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 10/47 (21%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQ---DDAYW 269
S A +++ A LS +GD++ + S+ D +W
Sbjct: 6 SGGTAVARYNFAARDM------RE-LSLREGDVVRIYSRIGGDQGWW 45
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 36.6 bits (85), Expect = 7e-04
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
S + Y AS LS G ++ ++ ++ + W
Sbjct: 6 SGEIAQVTSAYVAS-------GSEQLSLAPGQLILILKKNTSGW 42
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 36.4 bits (85), Expect = 7e-04
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 228 IRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQ-DDAYW 269
+ +DYDA D D L+ G+I+ V + + W
Sbjct: 2 VDYIVEYDYDAVHD------DE-LTIRVGEIIRNVKKLQEEGW 37
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 36.5 bits (85), Expect = 7e-04
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
Query: 225 ESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQD--DAYW 269
+SK + F Y+A +D D L+ +GDI+ ++++D D W
Sbjct: 7 KSKDYCKVIFPYEAQND------DE-LTIKEGDIVTLINKDCIDVGW 46
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 36.5 bits (85), Expect = 7e-04
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
S RA + Y + L +GD + V+ Q D W
Sbjct: 6 SGTPYRAMYQYRPQ-------NEDELELREGDRVDVMQQCDDGW 42
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 36.6 bits (85), Expect = 7e-04
Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAY 268
RA +D+ + + ++ KGD++ ++S+ D
Sbjct: 16 FARALYDFVPENP------EMEVALKKGDLMAILSKKDPL 49
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 37.1 bits (86), Expect = 7e-04
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQD--DAYW 269
RA + ++A + D +SFN GDI+ V + + W
Sbjct: 4 GSSGYRALYPFEARNH------DE-MSFNSGDIIQVDEKTVGEPGW 42
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 36.4 bits (85), Expect = 8e-04
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
S R F + L G+I+ V+ + + W
Sbjct: 6 SGEAHRVLFGFVPE-------TKEELQVMPGNIVFVLKKGNDNW 42
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 39.6 bits (93), Expect = 8e-04
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 148 GATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSE 207
GA + + +VV V G A + GL GD + N V K ++ K+L S
Sbjct: 373 GAEMSNKGKDQGVVVNNVKTGTPAAQIGL-KKGDVIIGANQQAV--KNIAELRKVLDSKP 429
Query: 208 GTITFKLIPADNKL 221
+ + D+ +
Sbjct: 430 SVLALNIQRGDSTI 443
Score = 30.8 bits (70), Expect = 0.55
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 161 VVARVMHGGAADRSGLIHVGDEVCEVNGINVE 192
V++V+ +A ++G I GD + +NG +
Sbjct: 289 FVSQVLPNSSAAKAG-IKAGDVITSLNGKPIS 319
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 36.7 bits (85), Expect = 8e-04
Identities = 8/43 (18%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQ--DDAYW 269
V+ + + + ++ ++ L+F KG+ + V+ + +D W
Sbjct: 19 VVQTLYPFSSVTE-----EE--LNFEKGETMEVIEKPENDPEW 54
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 36.1 bits (84), Expect = 8e-04
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 9/46 (19%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQD--DAYW 269
+ + F Y+A +D D L+ +GDI+ ++++D D W
Sbjct: 1 ASDYCKVIFPYEAQND------DE-LTIKEGDIVTLINKDCIDVGW 39
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 36.1 bits (84), Expect = 8e-04
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
R A +D++ +D L +GDI+ + + W
Sbjct: 7 RAVALYDFEPEND-------NELRLAEGDIVFISYKHGQGW 40
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 36.1 bits (84), Expect = 9e-04
Identities = 8/43 (18%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQ--DDAYW 269
V+ + + + ++ ++ L+F KG+ + V+ + +D W
Sbjct: 8 VVQTLYPFSSVTE-----EE--LNFEKGETMEVIEKPENDPEW 43
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 36.7 bits (85), Expect = 9e-04
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDA 267
RA +D+ + + ++ KGD++ ++S+ D
Sbjct: 16 FARALYDFVPENP------EMEVALKKGDLMAILSKKDP 48
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 36.1 bits (84), Expect = 0.001
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 9/46 (19%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQD--DAYW 269
S + F Y+A +D D L+ +GDI+ ++++D D W
Sbjct: 6 SGDYCKVIFPYEAQND------DE-LTIKEGDIVTLINKDCIDVGW 44
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 36.7 bits (85), Expect = 0.001
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 225 ESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
++ V A +DY A D ++ L K + L ++ +W
Sbjct: 29 TEEVIVIAKWDYTAQQD-----QE--LDIKKNERLWLLDDSKTWW 66
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 36.1 bits (84), Expect = 0.001
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 10/44 (22%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVS---QDDAYW 269
V+A +DY+ +D D LSF +G I+ +++ QDD +
Sbjct: 10 FVKALYDYEGQTD------DE-LSFPEGAIIRILNKENQDDDGF 46
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 36.2 bits (84), Expect = 0.001
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 8/39 (20%)
Query: 231 RAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
Y A ++ KGDIL +++ + W
Sbjct: 4 PPLPPYSAGGR--------EVTMKKGDILTLLNSTNKDW 34
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 36.2 bits (84), Expect = 0.001
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 217 ADNKLGYRESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAY--W 269
++G I V A + ++ D L+F GD + V+S+ D++ W
Sbjct: 7 GHERVGNLNQPIEVTALYSFEGQQP-----GD--LNFQAGDRITVISKTDSHFDW 54
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 35.6 bits (83), Expect = 0.001
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 7/42 (16%)
Query: 228 IRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ + + Y D ++ GD + +V++D
Sbjct: 2 MENKVLYAYVQKDDDE-------ITITPGDKISLVARDTGSG 36
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 36.1 bits (84), Expect = 0.001
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 8/45 (17%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQ-DDAYW 269
+ +A + A D LSF G + V + W
Sbjct: 9 PFRKAKALYACKAEHD------SE-LSFTAGTVFDNVHPSQEPGW 46
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 35.9 bits (83), Expect = 0.001
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 7/45 (15%)
Query: 225 ESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
Y D + +SF G + V+ + ++ W
Sbjct: 6 SGATSYMTCSAYQKVQD-------SEISFPAGVEVQVLEKQESGW 43
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 38.8 bits (91), Expect = 0.001
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 147 LGATIKTDEESGK-IVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQS 205
+G I D SGK +VV GG A+++G GD + V+G V+G + DV +LQ
Sbjct: 87 VGLEITYDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQG 145
Query: 206 SEGT 209
+
Sbjct: 146 EADS 149
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 36.2 bits (84), Expect = 0.001
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 227 KIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
I V A +DY + S D LSF KGD + V+ + +W
Sbjct: 3 DIIVVALYDYVSWSP-----DD--LSFQKGDQMVVLEESGEWW 38
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 35.2 bits (82), Expect = 0.001
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
R A +D++ D L +GDI+ + + W
Sbjct: 3 RAVALYDFEPE-------NDNELRLAEGDIVFISYKHGQGW 36
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
A +D+ AS D LS KG+ L V+ +
Sbjct: 8 FVALYDFVASGD-----NT--LSITKGEKLRVLGYNHNGE 40
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 35.7 bits (83), Expect = 0.001
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQ-DDAYW 269
A +++ +++ +D L F KGD+L +V+ D W
Sbjct: 13 ECIAKYNFHGTAE-----QD--LPFCKGDVLTIVAVTKDPNW 47
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 38.4 bits (90), Expect = 0.001
Identities = 10/77 (12%), Positives = 21/77 (27%), Gaps = 3/77 (3%)
Query: 145 EPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQ 204
+ V A R+G+ GD + N V + I Q
Sbjct: 373 RAFEQESPPHGNVIGVQVVGASENSAGWRAGI-RPGDIIISANKKPV--TDVKSLQTIAQ 429
Query: 205 SSEGTITFKLIPADNKL 221
+ + +++ +
Sbjct: 430 EKKKELLVQVLRGPGSM 446
Score = 30.7 bits (70), Expect = 0.42
Identities = 7/32 (21%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 161 VVARVMHGGAADRSGLIHVGDEVCEVNGINVE 192
+V++V A+ +G + GD + ++N +
Sbjct: 285 LVSQVNPNSPAELAG-LKAGDIITQINDTKIT 315
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 35.3 bits (82), Expect = 0.002
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
RA +DY A + +SF GD + V D W
Sbjct: 8 TYRAMYDYSAQ-------DEDEVSFRDGDYIVNVQPIDDGW 41
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 35.4 bits (82), Expect = 0.002
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 225 ESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
++ V A FDY A + ++ L K + L ++ ++W
Sbjct: 5 AEEVVVVAKFDYVAQQE-----QE--LDIKKNERLWLLDDSKSWW 42
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 35.5 bits (82), Expect = 0.002
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ DY + + F +G+ L V+S + +W
Sbjct: 20 LAVLSDYPSPDI-------SPPIFRRGEKLRVISDEGGWW 52
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 35.4 bits (82), Expect = 0.002
Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 7/43 (16%)
Query: 225 ESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDA 267
E A + + A + LS + L ++ D
Sbjct: 11 EGNQVYFAVYTFKARNP-------NELSVSANQKLKILEFKDV 46
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 35.0 bits (81), Expect = 0.002
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
V ++D+ A + + LS + D+L V+ +W
Sbjct: 10 WVLCNYDFQARNS-----SE--LSVKQRDVLEVLDDSRKWW 43
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 37.3 bits (86), Expect = 0.002
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
RA DY+ +S + ++ + GD++ VV + ++ W
Sbjct: 13 TYRAIADYEKTSG-------SEMALSTGDVVEVVEKSESGW 46
Score = 32.3 bits (73), Expect = 0.11
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
A Y A +S +G+ + V+ + W
Sbjct: 83 PYVAIKAYTAVEGDE-------VSLLEGEAVEVIHKLLDGW 116
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 37.0 bits (85), Expect = 0.002
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
V A Y+ S D L F KG+ L ++ Q +W
Sbjct: 11 QDNLVIALHSYEPSHD-------GDLGFEKGEQLRILEQSGEWW 47
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 34.5 bits (80), Expect = 0.003
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
V A +DY A D ++ L K + L ++ +W
Sbjct: 7 VIAKWDYTAQQD-----QE--LDIKKNERLWLLDDSKTWW 39
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 34.5 bits (80), Expect = 0.003
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
S A + ++ SS+ +S +G+ L ++ +D
Sbjct: 6 SGGHCVAIYHFEGSSEGT-------ISMAEGEDLSLMEEDKGDG 42
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 37.5 bits (86), Expect = 0.003
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
V F + + L F +G+ L ++S+ + W
Sbjct: 149 VVVGTFKFTGERE-------TDLPFEQGERLEILSKTNQDW 182
Score = 30.2 bits (67), Expect = 0.71
Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 5/54 (9%)
Query: 216 PADNKLGYRESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+DN + + FD ++ L KG + V +
Sbjct: 236 SSDNIELQPRLPAKAKVTFDRVPNAY-----DPTQLRVKKGQTVLVTQKMSNGM 284
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 34.7 bits (80), Expect = 0.003
Identities = 6/42 (14%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQ-DDAYW 269
+ ++ + L+F KGD++ ++ ++ W
Sbjct: 19 QCITKCEHTRPKP-----GE--LAFRKGDVVTILEACENKSW 53
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 36.2 bits (83), Expect = 0.003
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDD 266
+A +D+ A LS +GDI+ ++++
Sbjct: 7 TAKARYDFCARDR------SE-LSLKEGDIIKILNKKG 37
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 37.3 bits (85), Expect = 0.003
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 224 RESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
R + R A FD+ +S L+F GD++ ++S+ + W
Sbjct: 171 RMAAPRAEALFDFTGNSK-------LELNFKAGDVIFLLSRINKDW 209
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 33.8 bits (78), Expect = 0.004
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
++ +D+ A + + LS K D+L ++ +W
Sbjct: 3 YAKSKYDFVARNS-----SE--LSVMKDDVLEILDDRRQWW 36
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 36.6 bits (84), Expect = 0.004
Identities = 11/96 (11%), Positives = 26/96 (27%), Gaps = 12/96 (12%)
Query: 122 EIPQELVDDEEETVKIVQLVKSNEPLGA---------TIKTDEESGKIVVARVMHGGAAD 172
+ + + ++ + SN G V V A
Sbjct: 67 PVKMLIYSSKTLELRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAA 126
Query: 173 RSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEG 208
+GL D + + + D+ ++++ E
Sbjct: 127 LAGLRPHSDYIIGADTVM---NESEDLFSLIETHEA 159
Score = 32.0 bits (72), Expect = 0.16
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 147 LGATIKTDEESGKI---VVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKIL 203
+G++ + G V RV R+GL D + +NG + K + +L
Sbjct: 2 MGSSQSVEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLN-KDNDTLKDLL 60
Query: 204 QSSEGT 209
+++
Sbjct: 61 KANVEK 66
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 35.0 bits (81), Expect = 0.005
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 154 DEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSE 207
+ SG I V V + R G I GD + +VNG + ++ + + +
Sbjct: 32 EVSSG-IYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPL--VDSSELQEAVLTES 81
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 35.0 bits (81), Expect = 0.005
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 147 LGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSS 206
L D + G +++ +V+ G A R+GL GD + + V + DV + +++
Sbjct: 25 LREPSFPDVQHG-VLIHKVILGSPAHRAGL-RPGDVILAIGEQMV--QNAEDVYEAVRTQ 80
Query: 207 E 207
Sbjct: 81 S 81
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 36.9 bits (86), Expect = 0.005
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 15/78 (19%)
Query: 139 QLVKSNEP----LGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEG- 193
+L+ + + LG + D+++ + V+ GGAA +G + G V +V+ +
Sbjct: 219 ELISTGKASHASLGVQVTNDKDTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSA 277
Query: 194 ---------KTPGDVLKI 202
K PG + +
Sbjct: 278 DALVAAVRSKAPGATVAL 295
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 33.7 bits (78), Expect = 0.005
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
S+ RA F + + D L D L V Q + YW
Sbjct: 2 SEQTHRAIFRFVPRHE------DE-LELEVDDPLLVELQAEDYW 38
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 34.4 bits (79), Expect = 0.006
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAY 268
+ A FDY+A+ D + L+ +GD + V+SQD A
Sbjct: 28 AGPVWTAVFDYEAAGD------EE-LTLRRGDRVQVLSQDCAV 63
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 33.9 bits (78), Expect = 0.006
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 9/42 (21%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAY--W 269
V A Y + + LSF++GD++ ++ W
Sbjct: 11 VIALRSYITDNC-------SLLSFHRGDLIKLLPVATLEPGW 45
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 33.4 bits (77), Expect = 0.007
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 224 RESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
E + RA F + + D L D L V Q + YW
Sbjct: 3 EEHEQTHRAIFRFVPRHE------DE-LELEVDDPLLVELQAEDYW 41
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 36.3 bits (84), Expect = 0.008
Identities = 10/69 (14%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 148 GATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSE 207
+ ++ + +++ V+ G A+ +G + G + +NG + K ++L+
Sbjct: 80 LYKVLDNDTAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKVESELLQGSTRQL 138
Query: 208 GTITFKLIP 216
+K +
Sbjct: 139 QIGVYKEVV 147
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 32.9 bits (76), Expect = 0.009
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 7/38 (18%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDD 266
R +D+ A S + L+ GD ++++
Sbjct: 4 RGIVQYDFMAESQ-----DE--LTIKSGDKVYILDDKK 34
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 36.2 bits (84), Expect = 0.009
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 227 KIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+I V A +DY+A LSF KGD + V+ + +W
Sbjct: 8 RIIVVALYDYEAIHH-------EDLSFQKGDQMVVLEESGEWW 43
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 35.2 bits (80), Expect = 0.010
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
V F + + L F +G+ L ++S+ + W
Sbjct: 120 VVVGTFKFTGERE-------TDLPFEQGERLEILSKTNQDW 153
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 33.5 bits (77), Expect = 0.010
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 216 PADNKLGYRESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQ---DDAYW 269
N L + + R +DYDA++ + LS +++ V S D +
Sbjct: 6 SGLNDLKESSNNRKARVLYDYDAANS-----TE--LSLLADEVITVFSVVGMDSDWL 55
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 33.0 bits (76), Expect = 0.011
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDD 266
SK R +D+ A S D L+ GD ++++
Sbjct: 5 SKKRGIVQYDFMAESQ------DE-LTIKSGDKVYILDDKK 38
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 33.6 bits (77), Expect = 0.011
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 11/67 (16%)
Query: 161 VVARVMHGGAADRSGLIHVGDEVCEVNGINVEG---------KTPGDVLKILQSSEG-TI 210
V+ V AA +GL GD + V+G + PG L + +G +
Sbjct: 7 VLENVQPNSAASXAGL-QAGDRIVXVDGQPLTQWVTFVMLVRDNPGXSLALEIERQGSPL 65
Query: 211 TFKLIPA 217
+ LIP
Sbjct: 66 SLTLIPE 72
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 34.1 bits (78), Expect = 0.012
Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 226 SKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ + +++ A D L + G+ L + + D W
Sbjct: 2 APLFAVTLYEFKAERD-------DELDVSPGENLSICAHYDYEW 38
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 32.1 bits (73), Expect = 0.016
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 7/42 (16%)
Query: 228 IRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
I F Y A + D LS G + V+ W
Sbjct: 2 IPAFVXFAYVAERE------DE-LSLVXGSRVTVMEXCSDGW 36
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 33.5 bits (76), Expect = 0.018
Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 7/45 (15%)
Query: 225 ESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ + A +++ S LS GD++ + ++
Sbjct: 57 DKERHGVAIYNFQGSGA-------PQLSLQIGDVVRIQETCGDWY 94
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 33.5 bits (76), Expect = 0.019
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDA 267
+V+A DY A+ D L GD++ V+ +
Sbjct: 46 KVQAQHDYTATDT------DE-LQLKAGDVVLVIPFQNP 77
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 34.5 bits (80), Expect = 0.029
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 147 LGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQ 204
L D + G +++ +V+ G A R+GL GD + + V + DV + ++
Sbjct: 246 LREPSFPDVQHG-VLIHKVILGSPAHRAGL-RPGDVILAIGEQMV--QNAEDVYEAVR 299
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 34.8 bits (79), Expect = 0.032
Identities = 14/108 (12%), Positives = 31/108 (28%), Gaps = 19/108 (17%)
Query: 147 LGATIKTDEESGKIV------VARVMHGGAADRSGLIHVGDEVCEVNGINVEGKT----- 195
+ K D + + + G+ G + +++G V +
Sbjct: 739 IACDFKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGSNIYRV 798
Query: 196 ----PGDVLKILQSSEG----TITFKLIPADNKLGYRESKIRVRAHFD 235
G +I S +G + ++ D + YR R +
Sbjct: 799 LSEKAGTSARIRLSGKGGDKRDLMIDILDDDRFIRYRSWVEANRRYVH 846
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 31.5 bits (72), Expect = 0.035
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 251 LSFNKGDILHVVSQDDAYW 269
++ KGDIL +++ + W
Sbjct: 6 VTMKKGDILTLLNSTNKDW 24
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 33.8 bits (78), Expect = 0.045
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 14/83 (16%)
Query: 125 QELVDDEEETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVC 184
L + + +K + GA + V+ A+ G + D +
Sbjct: 232 MSLTSSKAKELKDRHRDFPDVISGA-----------YIIEVIPDTPAEAGG-LKENDVII 279
Query: 185 EVNGINVEGKTPGDVLKILQSSE 207
+NG +V + DV +++
Sbjct: 280 SINGQSV--VSANDVSDVIKRES 300
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 31.3 bits (71), Expect = 0.051
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 251 LSFNKGDILHVVSQDDAYW 269
++ KGDIL +++ + W
Sbjct: 8 VTMKKGDILTLLNSTNKDW 26
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 32.8 bits (75), Expect = 0.093
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
A +DY++ ++ D LSF KG+ L +V+ + W
Sbjct: 5 FVALYDYESRTE-----TD--LSFKKGERLQIVNNTEGDW 37
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 31.1 bits (70), Expect = 0.10
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 161 VVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPADN 219
VV + A + + G E+ V+GI + + + + + T + P +
Sbjct: 5 VVGEIAANSIAAEAQI-APGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFGS 62
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 32.5 bits (75), Expect = 0.12
Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 144 NEPLGATIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEG 193
D+ G IVV V G A +G I V D + V+
Sbjct: 231 APLHAQGGGIDQLQG-IVVNEVSPDGPAANAG-IQVNDLIISVDNKPAIS 278
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 32.2 bits (72), Expect = 0.15
Identities = 7/52 (13%), Positives = 14/52 (26%), Gaps = 7/52 (13%)
Query: 218 DNKLGYRESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
L RV +A L+ G+++ V + +
Sbjct: 230 LPNLQNGPIYARVIQKRVPNAY-------DKTALALEVGELVKVTKINVSGQ 274
Score = 31.1 bits (69), Expect = 0.30
Identities = 16/120 (13%), Positives = 32/120 (26%)
Query: 150 TIKTDEESGKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGT 209
++ + ++ S I + L
Sbjct: 50 SVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYL 109
Query: 210 ITFKLIPADNKLGYRESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
T LI ++ I + +Y + + + L F KGDIL + + + W
Sbjct: 110 DTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQW 169
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 32.2 bits (74), Expect = 0.15
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 17/72 (23%)
Query: 147 LGATIKTDE--ESGKI---VVARVMHGGAADRSGL----------IHVGDEVCEVNGINV 191
LG D+ E + +V G A ++GL + +GD + VNG V
Sbjct: 235 LGIKFAPDQSVEQLGVSGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKV 294
Query: 192 EGKTPGDVLKIL 203
D+ +IL
Sbjct: 295 --SNGSDLYRIL 304
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 30.5 bits (69), Expect = 0.16
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 7/39 (17%)
Query: 231 RAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+D+ A L+ G+ L + + + W
Sbjct: 9 IVLYDFKAEKAD-------ELTTYVGENLFICAHHNCEW 40
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 32.4 bits (74), Expect = 0.16
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
A +D+ AS D LS KG+ L V+ +
Sbjct: 46 FVALYDFVASGD-----NT--LSITKGEKLRVLGYNHNGE 78
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 30.0 bits (67), Expect = 0.19
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 217 ADNKLGYRESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQD-DAYW 269
A +K ++ +Y P L N GDI+ + + + W
Sbjct: 2 AQDKKRNELGLPKMEVFQEYYGIPPPPGAFGGF-LRLNPGDIVELTKAEAEHNW 54
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 31.4 bits (70), Expect = 0.24
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 243 YIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ + L F KGDIL + + + W
Sbjct: 145 FNGNDEEDLPFKKGDILRIRDKPEEQW 171
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 31.5 bits (70), Expect = 0.26
Identities = 7/55 (12%), Positives = 11/55 (20%), Gaps = 7/55 (12%)
Query: 215 IPADNKLGYRESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
I + A L+ GDI+ V +
Sbjct: 227 ITPLPSTQNGPVFAKAIQKRVPCAYDKT-------ALALEVGDIVKVTRMNINGQ 274
Score = 27.3 bits (59), Expect = 6.5
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 251 LSFNKGDILHVVSQDDAYW 269
L F KG+IL ++ + + W
Sbjct: 142 LPFKKGEILVIIEKPEEQW 160
>1tul_A TLP20; telokin-like protein; 2.20A {Autographa californica
nucleopolyhedroorganism_taxid} SCOP: b.85.5.1
Length = 108
Score = 29.7 bits (66), Expect = 0.34
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 1 MTSNEKEEFDISVSSLLETLQESQSTFSANDEELL-------FLSSLLQSKELNALVHVH 53
M S DI V++ + + E+ F DE L + + S +L L
Sbjct: 1 MASMSNGTPDIIVNAQINSEDENVLDFIIEDEYYLKKRGVGAHIIKVASSPQLRLLYKNA 60
Query: 54 NSIVNEQSHPVLSNAMQISLEVLDVLL 80
S V+ ++ VL N +Q L+ ++
Sbjct: 61 YSTVSCGNYGVLCNLVQNGEYDLNAIM 87
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 31.1 bits (70), Expect = 0.35
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 225 ESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
S + A +D+ D L F GD++ V+ + W
Sbjct: 28 GSVVCAEALWDHVTM-------DDQELGFKAGDVIEVMDATNREW 65
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 30.9 bits (70), Expect = 0.35
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
Query: 228 IRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+V +DY A +D L+F+KG I++V++++D W
Sbjct: 3 CQVIGMYDYTAQNDD-------ELAFSKGQIINVLNKEDPDW 37
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 31.2 bits (71), Expect = 0.36
Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 9/43 (20%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVV--SQDDAYW 269
A +++ +++ L F KGD+L +V ++D ++
Sbjct: 13 ECIAKYNFHGTAE-------QDLPFCKGDVLTIVAVTKDPNWY 48
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 30.7 bits (70), Expect = 0.43
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 161 VVARVMHGGAADRSGLIHVGDEVCEVNGINVE 192
V+ V+ G + ++G + GD + +NG +
Sbjct: 266 FVSEVLPGSGSAKAG-VKAGDIITSLNGKPLN 296
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 29.2 bits (65), Expect = 0.48
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 7/36 (19%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQ 264
A DY A + L+ ++G +++V S+
Sbjct: 24 MAVALQDYMAPDCRF-------LTIHRGQVVYVFSK 52
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 28.6 bits (64), Expect = 0.64
Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 7/38 (18%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDD 266
++ + Y +D D L GD + + +
Sbjct: 18 TLQVIYPYTPQND------DE-LELVPGDFIFMSPMEQ 48
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 28.0 bits (62), Expect = 0.65
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 229 RVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQD-DAYW 269
++ +Y P L N GDI+ + + + W
Sbjct: 6 KMEVFQEYYGIPPPPGAFGPF-LRLNPGDIVELTKAEAEHNW 46
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 28.4 bits (63), Expect = 0.76
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 7/34 (20%)
Query: 228 IRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHV 261
+ RA + + + L GD+L V
Sbjct: 12 FQYRALYPFRRERP------ED-LELLPGDVLVV 38
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 29.3 bits (64), Expect = 0.96
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 7/52 (13%)
Query: 216 PADNKLGYRESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDA 267
A +V+A DY A+ L GD++ V+ +
Sbjct: 131 GAGRLDLPPGFMFKVQAQHDYTAT-------DTDELQLKAGDVVLVIPFQNP 175
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 29.3 bits (65), Expect = 1.0
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 242 PYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ LS GD++ + ++
Sbjct: 25 NFQGSGAPQLSLQIGDVVRIQETCGDWY 52
>1vq8_C 50S ribosomal protein L4E; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: c.22.1.1 PDB: 1k73_E*
1k8a_E* 1k9m_E* 1kc8_E* 1kd1_E* 1kqs_C* 1m1k_E* 1m90_E*
1n8r_E* 1nji_E* 1q7y_E* 1q81_E* 1q82_E* 1q86_E* 1qvf_C
1qvg_C 1s72_C* 1vq4_C* 1vq5_C* 1vq6_C* ...
Length = 246
Score = 28.5 bits (63), Expect = 1.9
Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 13/96 (13%)
Query: 118 PRLPEIPQELVDDEEETVKIVQLVKSNEPLGATIKTDEESGKIVVARVMHGGAADRSGLI 177
+P + + +D +T ++V L+++ + + DE K + ++
Sbjct: 134 DEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADETKIKAGQGSARGRKYRRPASIL 193
Query: 178 HVGDE-------------VCEVNGINVEGKTPGDVL 200
V + V + +N E PG
Sbjct: 194 FVTSDEPSTAARNLAGADVATASEVNTEDLAPGGAP 229
>1vf6_C Maguk P55 subfamily member 5; L27 domain, heterodimer,
four-helical bundle, coiled-coil, hydrophobic packing
interactions; 2.10A {Mus musculus} SCOP: a.194.1.1
Length = 72
Score = 26.7 bits (58), Expect = 2.5
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 10 DISVSSLLETLQESQSTF--SANDEELLFLSSLLQSKELNALVHVHNSIVNEQSHP 63
D V L +L+ Q T S + E++ L L+Q+++ +HN++ S
Sbjct: 13 DPDVEDLFSSLKHIQHTLVDSQSQEDISLLLQLVQNRDFQNAFKIHNAVTVHMSKA 68
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 28.6 bits (62), Expect = 2.7
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 231 RAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
RA +DY+ + LSF GD L + +D
Sbjct: 432 RALYDYEGQ-------EHDELSFKAGDELTKMEDEDEQG 463
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 28.3 bits (62), Expect = 2.9
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 241 DPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
+ P + GDI+ V +
Sbjct: 449 YAHQPRTADEIPMEPGDIIGVAGNHWDGY 477
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 27.5 bits (61), Expect = 4.8
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
Query: 230 VRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQDDAYW 269
A +DY++ ++ LSF KG+ L +V+ + W
Sbjct: 88 FVALYDYESRTE-------TDLSFKKGERLQIVNNTEGDW 120
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 26.9 bits (59), Expect = 7.8
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 16/108 (14%)
Query: 158 GKIVVARVMHGGAADRSGLIHVGDEVCEVNGINVEGKTPGDVLKILQSSEGTITFKLIPA 217
GK + ++ A + + + + E + E GDV+ I +S G +
Sbjct: 151 GKTISHVIIGLKTAKGTKQLKLDPSIFE--SLQKERVEAGDVIYIEANS-GAVK------ 201
Query: 218 DNKLGYRESKIRVRAHFDYDASSDPYIPCKDAGLSFNKGDILHVVSQD 265
+ G ++ ++D ++ Y+P + K I V D
Sbjct: 202 --RQGRCDTYAT-----EFDLEAEEYVPLPKGDVHKKKEIIQDVTLHD 242
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.370
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,912,540
Number of extensions: 233694
Number of successful extensions: 1034
Number of sequences better than 10.0: 1
Number of HSP's gapped: 804
Number of HSP's successfully gapped: 407
Length of query: 269
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 177
Effective length of database: 4,133,061
Effective search space: 731551797
Effective search space used: 731551797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.3 bits)