BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14176
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By
Anchoring The E2 To The Hect Domain
Length = 380
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/123 (65%), Positives = 95/123 (77%), Gaps = 14/123 (11%)
Query: 140 LQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHT 199
++LYVNWRF+RGIE QFLALQKGF E++P HLL+ FDE+ELEL+I GL ID++DWK +T
Sbjct: 214 VRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVNT 273
Query: 200 RLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFK 259
RLK HCT D+ +VKWFW+ VE + EE RARLLQFVTGSSRVPLQGFK
Sbjct: 274 RLK--------------HCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFK 319
Query: 260 ALQ 262
ALQ
Sbjct: 320 ALQ 322
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within
The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 429
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 77/123 (62%), Gaps = 14/123 (11%)
Query: 140 LQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHT 199
++LY WR + +++QF A GF E++P L+ FDERELEL+IGG+ IDI DWK+HT
Sbjct: 264 VELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKHT 323
Query: 200 RLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFK 259
+ + SD V++WFW+ V + E RARLLQF TG+SR+P+ GFK
Sbjct: 324 DYRGYQE-------------SDE-VIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFK 369
Query: 260 ALQ 262
LQ
Sbjct: 370 DLQ 372
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect
pdb|3JVZ|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 78/122 (63%), Gaps = 13/122 (10%)
Query: 140 LQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHT 199
+ L + WRF+ +++Q A +GFTE++P+ L++ FDE ELEL++ GL +D++DW+QH+
Sbjct: 218 IDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHS 277
Query: 200 RLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFK 259
K + +C + PV++WFW+ V E R RLLQFVTG+SRVP+ GF
Sbjct: 278 IYK------------NGYC-PNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFA 324
Query: 260 AL 261
L
Sbjct: 325 EL 326
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect
pdb|3JW0|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 78/122 (63%), Gaps = 13/122 (10%)
Query: 140 LQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHT 199
+ L + WRF+ +++Q A +GFTE++P+ L++ FDE ELEL++ GL +D++DW+QH+
Sbjct: 218 IDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHS 277
Query: 200 RLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFK 259
K + +C + PV++WFW+ V E R RLLQFVTG+SRVP+ GF
Sbjct: 278 IYK------------NGYC-PNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFA 324
Query: 260 AL 261
L
Sbjct: 325 EL 326
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase
Length = 392
Score = 103 bits (258), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 76/122 (62%), Gaps = 13/122 (10%)
Query: 140 LQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHT 199
+ L + WRF+ +++Q A +GFTE++P+ L++ FDE ELEL+ GL +D++DW+QH+
Sbjct: 233 IDLVIQWRFVNRVQKQXNAFLEGFTELLPIDLIKIFDENELELLXCGLGDVDVNDWRQHS 292
Query: 200 RLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFK 259
K + +C + PV++WFW+ V E R RLLQFVTG+SRVP GF
Sbjct: 293 IYK------------NGYC-PNHPVIQWFWKAVLLXDAEKRIRLLQFVTGTSRVPXNGFA 339
Query: 260 AL 261
L
Sbjct: 340 EL 341
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex
pdb|2XBB|B Chain B, Nedd4 Hect:ub Complex
pdb|2XBF|A Chain A, Nedd4 Hect Structure
Length = 386
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 76/122 (62%), Gaps = 13/122 (10%)
Query: 140 LQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHT 199
+ L + WRF+ I++Q A ++GF E++P L++ FDE ELEL++ GL +D++DW++HT
Sbjct: 219 IYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDVDVNDWREHT 278
Query: 200 RLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFK 259
+ K +++ V++WFW+ V E R RLLQFVTG+SRVP+ GF
Sbjct: 279 KYK-------------NGYSANHQVIQWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNGFA 325
Query: 260 AL 261
L
Sbjct: 326 EL 327
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation
Mediated By The Wwp1 Hect Domain E3 Ligase
Length = 374
Score = 101 bits (251), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 73/120 (60%), Gaps = 14/120 (11%)
Query: 142 LYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHTRL 201
L WRF RG+++Q A GF E+VPL L+ FDE+ELE+++ G+ +D+ DW+++T
Sbjct: 216 LMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNT-- 273
Query: 202 KQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFKAL 261
+ +H T ++ + WFWQ V+ E+R RLLQFVTG+ R+PL GF L
Sbjct: 274 ------------VYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAEL 321
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin
Ligase
Length = 398
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 71/122 (58%), Gaps = 14/122 (11%)
Query: 140 LQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHT 199
+++ WR RG+E+Q A +GF EI+P L+ FD +ELE+++ G+ ID++DW++H
Sbjct: 233 IRMVAEWRLSRGVEEQTQAFFEGFNEILPQQYLQYFDAKELEVLLCGMQEIDLNDWQRHA 292
Query: 200 RLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFK 259
++++ + + WFWQ V+ E R RLLQFVTG+ R+P+ GF
Sbjct: 293 IYRRYART--------------SKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFA 338
Query: 260 AL 261
L
Sbjct: 339 DL 340
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
pdb|3G1N|B Chain B, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
Length = 388
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 71/123 (57%), Gaps = 14/123 (11%)
Query: 140 LQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHT 199
+ L R I +Q A +GF EI+P L+ F E+ELEL+I GL +IDI D K +T
Sbjct: 221 VHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNT 280
Query: 200 RLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFK 259
++ S++ ++WFW+ + S+ + RA+ LQFVTG+S+VPLQGF
Sbjct: 281 EYHKYQ--------------SNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFA 326
Query: 260 ALQ 262
AL+
Sbjct: 327 ALE 329
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain
Length = 405
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 71/123 (57%), Gaps = 14/123 (11%)
Query: 140 LQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHT 199
+ L R I +Q A +GF EI+P L+ F E+ELEL+I GL +IDI D K +T
Sbjct: 238 VHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNT 297
Query: 200 RLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFK 259
++ S++ ++WFW+ + S+ + RA+ LQFVTG+S+VPLQGF
Sbjct: 298 EYHKYQ--------------SNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFA 343
Query: 260 ALQ 262
AL+
Sbjct: 344 ALE 346
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|B Chain B, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|C Chain C, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1D5F|A Chain A, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|B Chain B, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|C Chain C, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
Length = 358
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 20/127 (15%)
Query: 140 LQLYVNWRFMRGIEQQFLALQKGF---TEIVPL-HLLRPFDERELELVIGGLTSIDIHDW 195
+ LY ++ + +E+QF A ++GF T PL +L RP E+EL+I G ++D
Sbjct: 197 VNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRP---EEIELLICGSRNLDFQAL 253
Query: 196 KQHTRLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPL 255
++ T T D+ +++ FW+IV S+++E + LQF TG+ R P+
Sbjct: 254 EETTEY-------------DGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPV 300
Query: 256 QGFKALQ 262
G L+
Sbjct: 301 GGLGKLK 307
>pdb|3PT3|A Chain A, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5
Hect Domain
pdb|3PT3|B Chain B, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5
Hect Domain
Length = 118
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 226 KWFWQIVESYSEEMRARLLQFVTGSSRVPL--QGFKAL 261
+WFW IVE S R L+ F T S +P +GF+ +
Sbjct: 31 RWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPM 68
>pdb|1RW5|A Chain A, Solution Structure Of Human Prolactin
pdb|3NPZ|A Chain A, Prolactin Receptor (Prlr) Complexed With The Natural
Hormone (Prl)
Length = 199
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 15/103 (14%)
Query: 120 QKGFTHWILGLLRYWENPTMLQLYVNWRFMR-----------GIEQQFLALQKGFTEIVP 168
QK F I+ +LR W P + L R M+ IE+Q L +G E++
Sbjct: 77 QKDFLSLIVSILRSWNEP-LYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLEGM-ELIV 134
Query: 169 LHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKQFSNIWHLF 211
+ E E+ V GL S+ + D + +RL + N+ H
Sbjct: 135 SQVHPETKENEIYPVWSGLPSLQMAD--EESRLSAYYNLLHCL 175
>pdb|3QPR|A Chain A, Hk97 Prohead I Encapsidating Inactive Virally Encoded
Protease
pdb|3QPR|B Chain B, Hk97 Prohead I Encapsidating Inactive Virally Encoded
Protease
pdb|3QPR|C Chain C, Hk97 Prohead I Encapsidating Inactive Virally Encoded
Protease
pdb|3QPR|D Chain D, Hk97 Prohead I Encapsidating Inactive Virally Encoded
Protease
pdb|3QPR|E Chain E, Hk97 Prohead I Encapsidating Inactive Virally Encoded
Protease
pdb|3QPR|F Chain F, Hk97 Prohead I Encapsidating Inactive Virally Encoded
Protease
pdb|3QPR|G Chain G, Hk97 Prohead I Encapsidating Inactive Virally Encoded
Protease
Length = 385
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 121 KGFTHWILGLLRYWENPTMLQLYVNWRFMRGI 152
K HW+ + ++ MLQ Y+N R M G+
Sbjct: 184 KTIAHWVQASRQVMDDAPMLQSYINNRLMYGL 215
>pdb|3EW3|A Chain A, The 1:2 Complex Between A Nterminal Elongated Prolactin
And Cellular Domain Of The Rat Prolactin Receptor
Length = 203
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 15/103 (14%)
Query: 120 QKGFTHWILGLLRYWENPTMLQLYVNWRFMR-----------GIEQQFLALQKGFTEIVP 168
QK F I+ +LR W P + L R M+ IE+Q L +G E++
Sbjct: 81 QKDFLSLIVSILRSWNEP-LYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLEGM-ELIV 138
Query: 169 LHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKQFSNIWHLF 211
+ E E+ V GL S+ + D + +RL + N+ H
Sbjct: 139 SQVHPETKENEIYPVWSGLPSLQMAD--EESRLSAYYNLLHCL 179
>pdb|2GP1|A Chain A, Bacteriophage Hk97 Prohead Ii Crystal Structure
pdb|2GP1|B Chain B, Bacteriophage Hk97 Prohead Ii Crystal Structure
pdb|2GP1|C Chain C, Bacteriophage Hk97 Prohead Ii Crystal Structure
pdb|2GP1|D Chain D, Bacteriophage Hk97 Prohead Ii Crystal Structure
pdb|2GP1|E Chain E, Bacteriophage Hk97 Prohead Ii Crystal Structure
pdb|2GP1|F Chain F, Bacteriophage Hk97 Prohead Ii Crystal Structure
pdb|2GP1|G Chain G, Bacteriophage Hk97 Prohead Ii Crystal Structure
Length = 282
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 121 KGFTHWILGLLRYWENPTMLQLYVNWRFMRGI 152
K HW+ + ++ MLQ Y+N R M G+
Sbjct: 81 KTIAHWVQASRQVMDDAPMLQSYINNRLMYGL 112
>pdb|3E8K|A Chain A, Crystal Structure Of Hk97 Prohead Ii
pdb|3E8K|B Chain B, Crystal Structure Of Hk97 Prohead Ii
pdb|3E8K|C Chain C, Crystal Structure Of Hk97 Prohead Ii
pdb|3E8K|D Chain D, Crystal Structure Of Hk97 Prohead Ii
pdb|3E8K|E Chain E, Crystal Structure Of Hk97 Prohead Ii
pdb|3E8K|F Chain F, Crystal Structure Of Hk97 Prohead Ii
pdb|3E8K|G Chain G, Crystal Structure Of Hk97 Prohead Ii
Length = 273
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 121 KGFTHWILGLLRYWENPTMLQLYVNWRFMRGI 152
K HW+ + ++ MLQ Y+N R M G+
Sbjct: 72 KTIAHWVQASRQVMDDAPMLQSYINNRLMYGL 103
>pdb|1OHG|A Chain A, Structure Of The Dsdna Bacteriophage Hk97 Mature Empty
Capsid
pdb|1OHG|B Chain B, Structure Of The Dsdna Bacteriophage Hk97 Mature Empty
Capsid
pdb|1OHG|C Chain C, Structure Of The Dsdna Bacteriophage Hk97 Mature Empty
Capsid
pdb|1OHG|D Chain D, Structure Of The Dsdna Bacteriophage Hk97 Mature Empty
Capsid
pdb|1OHG|E Chain E, Structure Of The Dsdna Bacteriophage Hk97 Mature Empty
Capsid
pdb|1OHG|F Chain F, Structure Of The Dsdna Bacteriophage Hk97 Mature Empty
Capsid
pdb|1OHG|G Chain G, Structure Of The Dsdna Bacteriophage Hk97 Mature Empty
Capsid
pdb|2FRP|A Chain A, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|2FRP|B Chain B, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|2FRP|C Chain C, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|2FRP|D Chain D, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|2FRP|E Chain E, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|2FRP|F Chain F, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|2FRP|G Chain G, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|2FSY|A Chain A, Bacteriophage Hk97 Pepsin-Treated Expansion Intermediate
Iv
pdb|2FSY|B Chain B, Bacteriophage Hk97 Pepsin-Treated Expansion Intermediate
Iv
pdb|2FSY|C Chain C, Bacteriophage Hk97 Pepsin-Treated Expansion Intermediate
Iv
pdb|2FSY|D Chain D, Bacteriophage Hk97 Pepsin-Treated Expansion Intermediate
Iv
pdb|2FSY|E Chain E, Bacteriophage Hk97 Pepsin-Treated Expansion Intermediate
Iv
pdb|2FSY|F Chain F, Bacteriophage Hk97 Pepsin-Treated Expansion Intermediate
Iv
pdb|2FSY|G Chain G, Bacteriophage Hk97 Pepsin-Treated Expansion Intermediate
Iv
pdb|2FT1|A Chain A, Bacteriophage Hk97 Head Ii
pdb|2FT1|B Chain B, Bacteriophage Hk97 Head Ii
pdb|2FT1|C Chain C, Bacteriophage Hk97 Head Ii
pdb|2FT1|D Chain D, Bacteriophage Hk97 Head Ii
pdb|2FT1|E Chain E, Bacteriophage Hk97 Head Ii
pdb|2FT1|F Chain F, Bacteriophage Hk97 Head Ii
pdb|2FT1|G Chain G, Bacteriophage Hk97 Head Ii
pdb|2FTE|A Chain A, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|2FTE|B Chain B, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|2FTE|C Chain C, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|2FTE|D Chain D, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|2FTE|E Chain E, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|2FTE|F Chain F, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|2FTE|G Chain G, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|3DDX|A Chain A, Hk97 Bacteriophage Capsid Expansion Intermediate-Ii Model
pdb|3DDX|B Chain B, Hk97 Bacteriophage Capsid Expansion Intermediate-Ii Model
pdb|3DDX|C Chain C, Hk97 Bacteriophage Capsid Expansion Intermediate-Ii Model
pdb|3DDX|D Chain D, Hk97 Bacteriophage Capsid Expansion Intermediate-Ii Model
pdb|3DDX|E Chain E, Hk97 Bacteriophage Capsid Expansion Intermediate-Ii Model
pdb|3DDX|F Chain F, Hk97 Bacteriophage Capsid Expansion Intermediate-Ii Model
pdb|3DDX|G Chain G, Hk97 Bacteriophage Capsid Expansion Intermediate-Ii Model
Length = 282
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 121 KGFTHWILGLLRYWENPTMLQLYVNWRFMRGI 152
K HW+ + ++ MLQ Y+N R M G+
Sbjct: 81 KTIAHWVQASRQVMDDAPMLQSYINNRLMYGL 112
>pdb|2FS3|A Chain A, Bacteriophage Hk97 K169y Head I
pdb|2FS3|B Chain B, Bacteriophage Hk97 K169y Head I
pdb|2FS3|C Chain C, Bacteriophage Hk97 K169y Head I
pdb|2FS3|D Chain D, Bacteriophage Hk97 K169y Head I
pdb|2FS3|E Chain E, Bacteriophage Hk97 K169y Head I
pdb|2FS3|F Chain F, Bacteriophage Hk97 K169y Head I
pdb|2FS3|G Chain G, Bacteriophage Hk97 K169y Head I
Length = 282
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 121 KGFTHWILGLLRYWENPTMLQLYVNWRFMRGI 152
K HW+ + ++ MLQ Y+N R M G+
Sbjct: 81 KTIAHWVQASRQVMDDAPMLQSYINNRLMYGL 112
>pdb|1IF0|A Chain A, Pseudo-Atomic Model Of Bacteriophage Hk97 Procapsid
(Prohead Ii)
pdb|1IF0|B Chain B, Pseudo-Atomic Model Of Bacteriophage Hk97 Procapsid
(Prohead Ii)
pdb|1IF0|C Chain C, Pseudo-Atomic Model Of Bacteriophage Hk97 Procapsid
(Prohead Ii)
pdb|1IF0|D Chain D, Pseudo-Atomic Model Of Bacteriophage Hk97 Procapsid
(Prohead Ii)
pdb|1IF0|E Chain E, Pseudo-Atomic Model Of Bacteriophage Hk97 Procapsid
(Prohead Ii)
pdb|1IF0|F Chain F, Pseudo-Atomic Model Of Bacteriophage Hk97 Procapsid
(Prohead Ii)
pdb|1IF0|G Chain G, Pseudo-Atomic Model Of Bacteriophage Hk97 Procapsid
(Prohead Ii)
Length = 256
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 121 KGFTHWILGLLRYWENPTMLQLYVNWRFMRGI 152
K HW+ + ++ MLQ Y+N R M G+
Sbjct: 57 KTIAHWVQASRQVMDDAPMLQSYINNRLMYGL 88
>pdb|3J1A|A Chain A, Hk97-Like Fold Fitted Into 3d Reconstruction Of
Bacteriophage Cw02
pdb|3J1A|B Chain B, Hk97-Like Fold Fitted Into 3d Reconstruction Of
Bacteriophage Cw02
pdb|3J1A|C Chain C, Hk97-Like Fold Fitted Into 3d Reconstruction Of
Bacteriophage Cw02
pdb|3J1A|D Chain D, Hk97-Like Fold Fitted Into 3d Reconstruction Of
Bacteriophage Cw02
pdb|3J1A|E Chain E, Hk97-Like Fold Fitted Into 3d Reconstruction Of
Bacteriophage Cw02
pdb|3J1A|F Chain F, Hk97-Like Fold Fitted Into 3d Reconstruction Of
Bacteriophage Cw02
pdb|3J1A|G Chain G, Hk97-Like Fold Fitted Into 3d Reconstruction Of
Bacteriophage Cw02
Length = 199
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 121 KGFTHWILGLLRYWENPTMLQLYVNWRFMRGI 152
K HW+ + ++ MLQ Y+N R M G+
Sbjct: 3 KTIAHWVQASRQVMDDAPMLQSYINNRLMYGL 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.139 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,882,363
Number of Sequences: 62578
Number of extensions: 316338
Number of successful extensions: 839
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 799
Number of HSP's gapped (non-prelim): 36
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)