Query psy14176
Match_columns 262
No_of_seqs 158 out of 1129
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 21:21:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14176.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14176hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5021 HUL4 Ubiquitin-protein 100.0 1.1E-53 2.3E-58 429.0 18.8 228 10-262 559-814 (872)
2 smart00119 HECTc Domain Homolo 100.0 5.9E-51 1.3E-55 377.3 19.7 229 10-262 27-283 (336)
3 cd00078 HECTc HECT domain; C-t 100.0 6.6E-50 1.4E-54 372.4 21.0 233 4-261 39-300 (352)
4 KOG0939|consensus 100.0 3.2E-48 7E-53 373.1 13.2 230 7-262 405-661 (720)
5 PF00632 HECT: HECT-domain (ub 100.0 1.7E-46 3.7E-51 343.9 13.5 199 38-261 41-261 (317)
6 KOG0941|consensus 100.0 8.1E-46 1.8E-50 362.6 15.6 233 6-262 542-799 (850)
7 KOG0942|consensus 100.0 2.8E-45 6E-50 360.2 10.6 228 10-262 689-948 (1001)
8 KOG0170|consensus 100.0 5.6E-42 1.2E-46 320.5 16.5 201 37-262 326-562 (621)
9 KOG4427|consensus 100.0 3.9E-41 8.6E-46 325.1 14.0 201 37-262 799-1019(1096)
10 KOG0940|consensus 100.0 4.6E-30 1E-34 237.8 8.4 196 38-262 100-309 (358)
11 KOG0943|consensus 99.9 1.1E-26 2.4E-31 231.9 9.3 201 38-257 2739-2959(3015)
12 PHA02681 ORF089 virion membran 43.4 13 0.00028 27.7 1.1 19 234-252 51-69 (92)
13 TIGR03853 matur_matur probable 30.8 47 0.001 24.4 2.4 51 2-52 11-62 (77)
14 PF10678 DUF2492: Protein of u 27.1 63 0.0014 23.8 2.5 51 2-52 13-64 (78)
15 PF13945 NST1: Salt tolerance 24.3 53 0.0011 28.3 1.9 22 221-245 103-124 (190)
16 PF02758 PYRIN: PAAD/DAPIN/Pyr 23.4 75 0.0016 23.2 2.4 30 227-256 4-38 (83)
17 COG0567 SucA 2-oxoglutarate de 22.4 74 0.0016 33.7 2.9 116 137-260 68-211 (906)
No 1
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-53 Score=429.05 Aligned_cols=228 Identities=33% Similarity=0.548 Sum_probs=211.1
Q ss_pred CcchHHHHHHHhhhcc---cceecCCCCCC---------hHHHHHHHHHHHHHhhccccccccccCeeecCCCCHHHHHH
Q psy14176 10 VRDEKQIDLAEQLESV---AFVLCGEDHIS---------LDKFCQIFQAKGMILGLSDQMILALSDDLSVHGFKNKMWKF 77 (262)
Q Consensus 10 ~~~e~~~~~~~~~~~~---~~~~~~~~~~~---------~~~~~~~f~~~G~llg~al~~~~~~~~~~l~l~f~~~f~k~ 77 (262)
|+.|+=..|+.+++++ .|..+.++... .++++++|+|+|++||+|| ++++.++++||++|||+
T Consensus 559 ltrE~~~lLs~~~Fnp~y~LF~y~t~d~~~~~~n~~s~~npe~L~yf~fiGrvIGkaI-----yd~~~LD~~F~~~fyKk 633 (872)
T COG5021 559 LTREWLFLLSKEMFNPDYGLFEYITEDLYTLPINPLSSINPEHLSYFKFLGRVIGKAI-----YDSRILDVQFSKAFYKK 633 (872)
T ss_pred cchHHHHHHhHHhcCCcccceeeecccccccCcCccccCCHHHHHHHHHHHHHHHHHH-----HhcceeeecchHHHHHH
Confidence 6778878999999986 45555554222 3889999999999999999 99999999999999999
Q ss_pred hhCCCCChhhhhhccCccchhhHhhHHHHHHhcCccc-hheeeeEeEeeeeCCee-------------eeech-HHHHHH
Q psy14176 78 SLGQHCHQNKSKSTCYDTYNHGHRLYVNWRFMRGIEQ-QFLALQKGFTHWILGLL-------------RYWEN-PTMLQL 142 (262)
Q Consensus 78 Llg~~~tl~Dl~~~~~D~~~~l~~s~l~~l~~~~~~~-~~l~l~F~v~~~~~g~~-------------vt~eN-~eYv~~ 142 (262)
|++++++++|++++ | |++|++ |.||+++++++ . ++++|+++.+.+|.. ||.+| ++||++
T Consensus 634 lL~~~~sl~Dl~s~--D--pe~y~s-Lv~ll~~~~d~~~-l~l~Fsve~~~fg~~~tVeLipnG~ni~VT~~Nk~eYV~~ 707 (872)
T COG5021 634 LLGKPVSLVDLESL--D--PELYRS-LVWLLNNDIDETI-LDLTFTVEDDSFGESRTVELIPNGRNISVTNENKKEYVKK 707 (872)
T ss_pred HhCCCCchhhhhhc--C--HHHHHH-HHHHHcCCCCcce-eeeeEEEeecccCceeEEEeccCCccccccchHHHHHHHH
Confidence 99999999999999 9 999999 99999999988 5 999999887766644 34459 999999
Q ss_pred HHHHHHHHhHHHHHHHHHhccccccccccCCCCCHHHHHHHHcCCCC-CchhhhccceeecccccchhhhhhccCCCCCC
Q psy14176 143 YVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTS-IDIHDWKQHTRLKQFSNIWHLFFLLSQHCTSD 221 (262)
Q Consensus 143 ~~~~~l~~~i~~q~~afr~Gf~~vip~~~L~~fs~~EL~~licG~~~-id~~dlk~~t~y~~~~~~~~~~~~~~~g~~~~ 221 (262)
+++|+++++|++|++||..||.+|||.+++++|++.||+.||||.++ ||++|||++|.|. ||+++
T Consensus 708 vvdy~L~k~ie~Q~~AF~~GF~~ii~~~~i~iF~e~ELe~LI~G~~e~iDidd~K~~T~Y~--------------GY~~~ 773 (872)
T COG5021 708 VVDYKLNKRVEKQFSAFKSGFSEIIPPDLLQIFDESELELLIGGIPEDIDIDDWKSNTAYH--------------GYTED 773 (872)
T ss_pred HHHHHhhhhHHHHHHHHHhhHHHhcCHHHHhhcCHHHHHHHHCCCCccccHHHHhhccccc--------------ccccC
Confidence 99999999999999999999999999999999999999999999998 9999999999998 99999
Q ss_pred CHHHHHHHHHHHhCCHHHHHhhcccccCCCCCCcccccccC
Q psy14176 222 TPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFKALQ 262 (262)
Q Consensus 222 ~~~i~~Fw~vl~~~s~eer~~fL~FvTGs~rlP~gGf~~L~ 262 (262)
+|+|.|||++|++|+.|+|++|||||||++|+|++||++||
T Consensus 774 s~~I~wFWeii~~f~~eer~klLQFvTGtsriPi~GFk~L~ 814 (872)
T COG5021 774 SPIIVWFWEIISEFDFEERAKLLQFVTGTSRIPINGFKDLQ 814 (872)
T ss_pred CcHHHHHHHHHHHhCHHHHhhhheeccCCCCCCCCChhhcC
Confidence 99999999999999999999999999999999999999996
No 2
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=100.00 E-value=5.9e-51 Score=377.34 Aligned_cols=229 Identities=32% Similarity=0.495 Sum_probs=202.2
Q ss_pred CcchHHHHHHHhhhcc---cceecCCC---------CCChHHHHHHHHHHHHHhhccccccccccCeeecCCCCHHHHHH
Q psy14176 10 VRDEKQIDLAEQLESV---AFVLCGED---------HISLDKFCQIFQAKGMILGLSDQMILALSDDLSVHGFKNKMWKF 77 (262)
Q Consensus 10 ~~~e~~~~~~~~~~~~---~~~~~~~~---------~~~~~~~~~~f~~~G~llg~al~~~~~~~~~~l~l~f~~~f~k~ 77 (262)
+.+|+=..++.++.++ .|.+++++ ....++++++|+++|+++|+|| +++.+++++|||+|||+
T Consensus 27 ~~rEf~~~l~~el~~~~~~lf~~~~~~~~~~~~p~~~~~~~~~l~~f~~~G~lig~al-----~~~~~~~l~f~~~f~k~ 101 (336)
T smart00119 27 VTREFFFLLSKELFNPDYGLFRYSPNDYLLYPNPRAFFANPEHLAYFRFIGRVLGKAL-----YDNRLLDLFFARPFYKK 101 (336)
T ss_pred hHHHHHHHHHHHHhCcccCCceEcCCCCeEEeCCCccccchHHHHHHHHHHHHHHHHH-----HcCCeeCCCCCHHHHHH
Confidence 4566657888888765 45555442 1112567899999999999999 99999999999999999
Q ss_pred hhCCCCChhhhhhccCccchhhHhhHHHHH-HhcCccchheeeeEeEe------------eeeCCee--eeech-HHHHH
Q psy14176 78 SLGQHCHQNKSKSTCYDTYNHGHRLYVNWR-FMRGIEQQFLALQKGFT------------HWILGLL--RYWEN-PTMLQ 141 (262)
Q Consensus 78 Llg~~~tl~Dl~~~~~D~~~~l~~s~l~~l-~~~~~~~~~l~l~F~v~------------~~~~g~~--vt~eN-~eYv~ 141 (262)
|+|.+++++||+++ | |+++++ +++| .+++..+. ++++|++. ..++|.. ||.+| ++||+
T Consensus 102 L~~~~~tl~Dl~~~--D--~~~~~s-l~~l~~~~~~~~~-~~l~F~~~~~~~~g~~~~~eL~~~G~~~~Vt~~N~~eYv~ 175 (336)
T smart00119 102 LLGKPVTLHDLESL--D--PELYKS-LKWLLLNNDTSEE-LDLTFSIVLTSEFGQVKVVELKPGGSNIPVTEENKKEYVH 175 (336)
T ss_pred HhCCCCCHHHHHHh--C--HHHHHH-HHHHHHhCCCccc-ccceEEEEeeecCCCcceEecCCCCCCCcCCHHHHHHHHH
Confidence 99999999999999 9 999999 9999 56665554 88999743 2344543 67779 99999
Q ss_pred HHHHHHHHHhHHHHHHHHHhccccccccccCCCCCHHHHHHHHcCCCCCchhhhccceeecccccchhhhhhccCCCCCC
Q psy14176 142 LYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKQFSNIWHLFFLLSQHCTSD 221 (262)
Q Consensus 142 ~~~~~~l~~~i~~q~~afr~Gf~~vip~~~L~~fs~~EL~~licG~~~id~~dlk~~t~y~~~~~~~~~~~~~~~g~~~~ 221 (262)
+++++++.++++.|++|||+||++|+|.+.+++|+|+||+.++||.++||+++|+++++|. +||+++
T Consensus 176 ~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~i~~~~l~~~~~~~-------------~g~~~~ 242 (336)
T smart00119 176 LVIEYRLNKGIEKQLEAFREGFSEVIPENLLRLFTPEELELLICGSPEIDVDDLKSNTEYK-------------GGYSEN 242 (336)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHcCHHHhhCCCHHHHHHHhCCCCCCCHHHHhhheEEc-------------CCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999 599999
Q ss_pred CHHHHHHHHHHHhCCHHHHHhhcccccCCCCCCcccccccC
Q psy14176 222 TPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFKALQ 262 (262)
Q Consensus 222 ~~~i~~Fw~vl~~~s~eer~~fL~FvTGs~rlP~gGf~~L~ 262 (262)
++.|+|||++|++||++||++||+|+||++|+|++||++|+
T Consensus 243 ~~~i~~Fw~vl~~~s~ee~~~fL~F~TG~~rlP~~G~~~l~ 283 (336)
T smart00119 243 SQTIKWFWEVVESFTNEERRKLLQFVTGSSRLPVGGFAALS 283 (336)
T ss_pred CHHHHHHHHHHHHCCHHHHHHhheeccCCCCCCCCchhhcC
Confidence 99999999999999999999999999999999999999873
No 3
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=100.00 E-value=6.6e-50 Score=372.36 Aligned_cols=233 Identities=30% Similarity=0.453 Sum_probs=209.0
Q ss_pred ccCCCCCcchHHHHHHHhhhcc---cceecCC--CCCC-------hHHHHHHHHHHHHHhhccccccccccCeeecCCCC
Q psy14176 4 ATGASMVRDEKQIDLAEQLESV---AFVLCGE--DHIS-------LDKFCQIFQAKGMILGLSDQMILALSDDLSVHGFK 71 (262)
Q Consensus 4 ~~~~~~~~~e~~~~~~~~~~~~---~~~~~~~--~~~~-------~~~~~~~f~~~G~llg~al~~~~~~~~~~l~l~f~ 71 (262)
+.|++=+.+|+-..++.++.++ .|..+++ ..+. .++.+++|+++|+++|+|| +++.+++++||
T Consensus 39 g~D~GG~~rE~~~~l~~el~~~~~~lF~~~~~~~~~~~~~p~~~~~~~~~~~f~~~G~lig~al-----~~~~~l~l~f~ 113 (352)
T cd00078 39 GIDAGGVTREFFTLVSKELFNPSYGLFRYTPDDSGLLYPNPSSFADEDHLKLFRFLGRLLGKAL-----YEGRLLDLPFS 113 (352)
T ss_pred ccCCCcchHHHHHHHHHHHcCCCCCCeeecCCCCceEEeCCCcccchhHHHHHHHHHHHHHHHH-----HcCceeCCCCC
Confidence 4566667788878999999865 5777776 2111 1357899999999999999 99999999999
Q ss_pred HHHHHHhhCCCCChhhhhhccCccchhhHhhHHHHHHhcCc--cchheeeeEeEeee------------eCCe--eeeec
Q psy14176 72 NKMWKFSLGQHCHQNKSKSTCYDTYNHGHRLYVNWRFMRGI--EQQFLALQKGFTHW------------ILGL--LRYWE 135 (262)
Q Consensus 72 ~~f~k~Llg~~~tl~Dl~~~~~D~~~~l~~s~l~~l~~~~~--~~~~l~l~F~v~~~------------~~g~--~vt~e 135 (262)
|+|||+|+|.++|++||+++ | |++|++ +++|++++. ++ ++++|++... ++|. .||.+
T Consensus 114 ~~f~k~L~g~~~t~~Dl~~i--D--~~~~~s-l~~l~~~~~~~~~--l~l~F~~~~~~~~~~~~~veL~~~G~~~~VT~~ 186 (352)
T cd00078 114 RAFYKKLLGKPLSLEDLEEL--D--PELYKS-LKELLDNDGDEDD--LELTFTIELDSSFGGAVTVELKPGGRDIPVTNE 186 (352)
T ss_pred HHHHHHHhCCCCCHHHHHHh--C--HHHHHH-HHHHHhcCCchhh--hcceeEEEEeecCCCcceEecCCCCCCCcCCHH
Confidence 99999999999999999999 9 999999 999998775 45 8999987643 3443 46778
Q ss_pred h-HHHHHHHHHHHHHHhHHHHHHHHHhccccccccccCCCCCHHHHHHHHcCCCCCchhhhccceeecccccchhhhhhc
Q psy14176 136 N-PTMLQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKQFSNIWHLFFLL 214 (262)
Q Consensus 136 N-~eYv~~~~~~~l~~~i~~q~~afr~Gf~~vip~~~L~~fs~~EL~~licG~~~id~~dlk~~t~y~~~~~~~~~~~~~ 214 (262)
| ++||+++++++++++++.|++|||+||++|+|...+++|+|+||+.++||.++||+++|+++++|.
T Consensus 187 N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~lvcG~~~id~~~l~~~~~y~------------ 254 (352)
T cd00078 187 NKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLICGSEDIDLEDLKKNTEYK------------ 254 (352)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHcCHHhhhCCCHHHHHHHhCCCCCCCHHHHHhceEec------------
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhCCHHHHHhhcccccCCCCCCccccccc
Q psy14176 215 SQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFKAL 261 (262)
Q Consensus 215 ~~g~~~~~~~i~~Fw~vl~~~s~eer~~fL~FvTGs~rlP~gGf~~L 261 (262)
+||+.++++|+|||+++++||++||++||+|+||++|+|++||++|
T Consensus 255 -~~~~~~~~~i~~Fw~vl~~~s~eer~~fL~F~TG~~rlP~~G~~~l 300 (352)
T cd00078 255 -GGYSSDSPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVGGFADL 300 (352)
T ss_pred -CCCCCCCHHHHHHHHHHHhCCHHHHHHhheeecCCCCCCCcchhhc
Confidence 4777899999999999999999999999999999999999999987
No 4
>KOG0939|consensus
Probab=100.00 E-value=3.2e-48 Score=373.06 Aligned_cols=230 Identities=32% Similarity=0.460 Sum_probs=209.0
Q ss_pred CCCCcchHHHHHHHhhhcccc-------------eecCCCCCChHHHHHHHHHHHHHhhccccccccccCeeecCCCCHH
Q psy14176 7 ASMVRDEKQIDLAEQLESVAF-------------VLCGEDHISLDKFCQIFQAKGMILGLSDQMILALSDDLSVHGFKNK 73 (262)
Q Consensus 7 ~~~~~~e~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~f~~~G~llg~al~~~~~~~~~~l~l~f~~~ 73 (262)
+.=|.+||=.-++++++++.| .||++++. .++|+++|+|+||++|||+ +++..++..|.+.
T Consensus 405 ~gG~~rEw~~ll~r~ifnp~~alf~~~~~d~tt~~pn~~s~~-np~hLs~fkf~GriigKal-----~d~ql~~c~ftrs 478 (720)
T KOG0939|consen 405 AGGVTREWLQLLSREIFNPRYALFTTVGSDQTTFHPNPNSYV-NPEHLSYFKFVGRIIGKAL-----FDGQLLECYFTRS 478 (720)
T ss_pred cchHHHHHHHHHHHHHcCCCcceEEEcCCCceEEeeCCcccC-ChhhhhHHHhhHHHHHHHH-----hcchhhhheeeHH
Confidence 443556666889999998643 33333333 4789999999999999999 9999999999999
Q ss_pred HHHHhhCCCCChhhhhhccCccchhhHhhHHHHHHhcCccchheeeeEeEeeeeCC-----------e--eeeech-HHH
Q psy14176 74 MWKFSLGQHCHQNKSKSTCYDTYNHGHRLYVNWRFMRGIEQQFLALQKGFTHWILG-----------L--LRYWEN-PTM 139 (262)
Q Consensus 74 f~k~Llg~~~tl~Dl~~~~~D~~~~l~~s~l~~l~~~~~~~~~l~l~F~v~~~~~g-----------~--~vt~eN-~eY 139 (262)
|||+++|.+++++|++.. | |+.|++ +.||+++|+++. ++++|+.+.+.+| . .||.+| .+|
T Consensus 479 fyk~ilG~~v~~~d~es~--D--P~y~k~-l~~il~ndis~~-l~ltfs~e~~~~g~~~~~eL~p~G~~i~Vt~~nK~~y 552 (720)
T KOG0939|consen 479 FYKHILGLPVTYHDMESA--D--PEYYKS-LVWILKNDISDT-LELTFSEEDDEFGVESVVELKPGGAKIYVTEANKQEY 552 (720)
T ss_pred HHhhccCCceeeeehhhc--C--hHHhhc-eeehhcCCcccc-eeEEEEEeeccccccceeecccCCCceeeccccHHHH
Confidence 999999999999999999 9 999999 999999999987 9999998776544 2 355669 999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhccccccccccCCCCCHHHHHHHHcCCCCCchhhhccceeecccccchhhhhhccCCCC
Q psy14176 140 LQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKQFSNIWHLFFLLSQHCT 219 (262)
Q Consensus 140 v~~~~~~~l~~~i~~q~~afr~Gf~~vip~~~L~~fs~~EL~~licG~~~id~~dlk~~t~y~~~~~~~~~~~~~~~g~~ 219 (262)
|++++++||.+++++|++||.+||+++||.+++++|++.|||.++||.++||++|||++|+|. ||+
T Consensus 553 v~lv~q~rL~~~ir~ql~afl~Gl~~iip~~li~if~E~ELELLisGlpeidvdd~k~nt~y~--------------~~~ 618 (720)
T KOG0939|consen 553 VQLVTQYRLTNSIRKQLDAFLAGLHEIIPKVLLSIFDEQELELLISGLPEIDVDDLKANTEYL--------------GYT 618 (720)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHcCCCcccHHHHHhhhhhh--------------ccc
Confidence 999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCCHHHHHHHHHHHhCCHHHHHhhcccccCCCCCCcccccccC
Q psy14176 220 SDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFKALQ 262 (262)
Q Consensus 220 ~~~~~i~~Fw~vl~~~s~eer~~fL~FvTGs~rlP~gGf~~L~ 262 (262)
..+++|+|||++|.+|++++|.+|||||||++++|++||++|+
T Consensus 619 ~~~~~i~wFWrav~sf~~eeraklLqFvTGtSkvP~~GF~~l~ 661 (720)
T KOG0939|consen 619 KASSVIQWFWRAVRSFDQEERAKLLQFVTGTSKVPLGGFAALE 661 (720)
T ss_pred ccchHHHHHHHHHhhhcHHHHHhhHeeecccccCCcccccccc
Confidence 9999999999999999999999999999999999999999874
No 5
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=100.00 E-value=1.7e-46 Score=343.86 Aligned_cols=199 Identities=30% Similarity=0.517 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHhhccccccccccCeeecCCCCHHHHHHhh-CCCCChhhhhhccCccchhhHhhHHHHHHhcC-----
Q psy14176 38 DKFCQIFQAKGMILGLSDQMILALSDDLSVHGFKNKMWKFSL-GQHCHQNKSKSTCYDTYNHGHRLYVNWRFMRG----- 111 (262)
Q Consensus 38 ~~~~~~f~~~G~llg~al~~~~~~~~~~l~l~f~~~f~k~Ll-g~~~tl~Dl~~~~~D~~~~l~~s~l~~l~~~~----- 111 (262)
+..+++|+++|++||+|| +++.+++++||++|||+|+ |.+++++|++++ | |+++++ ++++++.+
T Consensus 41 ~~~~~~~~~lG~lig~ai-----~~~~~l~~~f~~~~~k~l~~g~~~t~~Dl~~i--D--~~~~~s-l~~l~~~~~~~~~ 110 (317)
T PF00632_consen 41 EEHLKMFRFLGRLIGKAI-----RNGIPLPLPFSPAFWKYLLSGEPLTLEDLEEI--D--PELYKS-LKKLLDMDNDEED 110 (317)
T ss_dssp TTHHHHHHHHHHHHHHHH-----HTTS-ESSEB-HHHHHHHT-T----HHHHHCC--S--HHHHHH-HHHHHHSHSGSCT
T ss_pred HHHHHHHHHHHHHHHHHH-----HcCCccccCcCHHHHHHHhcCCCCccccchhc--C--chhhcc-hhhheeccccccc
Confidence 367899999999999999 9999999999999999999 999999999999 9 999999 99998532
Q ss_pred ccchheeeeEeEeeee------------CC--eeeeech-HHHHHHHHHHHHHHhHHHHHHHHHhccccccccccCCCCC
Q psy14176 112 IEQQFLALQKGFTHWI------------LG--LLRYWEN-PTMLQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFD 176 (262)
Q Consensus 112 ~~~~~l~l~F~v~~~~------------~g--~~vt~eN-~eYv~~~~~~~l~~~i~~q~~afr~Gf~~vip~~~L~~fs 176 (262)
+++ ++++|+++... +| ..||.+| ++||++++++++.++++.|+++||+||.+|+|...+++|+
T Consensus 111 ~~~--l~l~F~~~~~~~~~~~~~~eL~~~G~~~~Vt~~N~~eyv~~~~~~~l~~~~~~~~~~~r~Gf~~vi~~~~l~~f~ 188 (317)
T PF00632_consen 111 VED--LDLTFSVPSSSGGGQVEEVELIPGGSNIPVTNENKEEYVRLLAQYRLNESVKKQLEAFRKGFYSVIPLELLSLFS 188 (317)
T ss_dssp TSG--CTEBSEEEEEECTTEEEEEESSTTGGGSB-TTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHSSHHHHTTSS
T ss_pred eee--cceEEEEecccccCceeEeeecCCCcccccchhhhhHHHHhhhhhhcccccchhHHHHhcchhhcchhHHHHcCC
Confidence 345 78999976433 33 2477789 9999999999999989999999999999999999999999
Q ss_pred HHHHHHHHcCCCC-CchhhhccceeecccccchhhhhhccCCCCCCCHHHHHHHHHHHhCCHHHHHhhcccccCCCCCCc
Q psy14176 177 ERELELVIGGLTS-IDIHDWKQHTRLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPL 255 (262)
Q Consensus 177 ~~EL~~licG~~~-id~~dlk~~t~y~~~~~~~~~~~~~~~g~~~~~~~i~~Fw~vl~~~s~eer~~fL~FvTGs~rlP~ 255 (262)
|+||+.++||.++ ||+++|+++++|. +||+++++.++|||++|++||++||++||+|+||++|+|+
T Consensus 189 ~~eL~~l~~G~~~~i~~~~l~~~~~~~-------------~g~~~~~~~i~~fw~vl~~~s~~~~~~fL~F~TG~~~lP~ 255 (317)
T PF00632_consen 189 PEELERLLCGSPEPIDVEDLKSNTRYE-------------GGYTESSPVIQWFWEVLEEFSQEERRKFLRFVTGSSRLPP 255 (317)
T ss_dssp HHHHHHHHHCBSS---HHHHHHTEEEE-------------SSS-TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSSSSB-T
T ss_pred HHHHHHHhcCccccCCHHHHHhcccch-------------hccccccceeeEEeeeeccCCHHHhheeEEEecCCCCCCc
Confidence 9999999999999 9999999999999 5899999999999999999999999999999999999999
Q ss_pred cccccc
Q psy14176 256 QGFKAL 261 (262)
Q Consensus 256 gGf~~L 261 (262)
+||++|
T Consensus 256 ~G~~~l 261 (317)
T PF00632_consen 256 GGFSNL 261 (317)
T ss_dssp TGGGGG
T ss_pred cccccc
Confidence 999976
No 6
>KOG0941|consensus
Probab=100.00 E-value=8.1e-46 Score=362.62 Aligned_cols=233 Identities=24% Similarity=0.363 Sum_probs=207.4
Q ss_pred CCCCCcchHHHHHHHhhhcccc---eecCCCCCCh-----HHHHHHHHHHHHHhhccccccccccCeeecCCCCHHHHHH
Q psy14176 6 GASMVRDEKQIDLAEQLESVAF---VLCGEDHISL-----DKFCQIFQAKGMILGLSDQMILALSDDLSVHGFKNKMWKF 77 (262)
Q Consensus 6 ~~~~~~~e~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~f~~~G~llg~al~~~~~~~~~~l~l~f~~~f~k~ 77 (262)
-|+=|+.|+=.-+.+.+.++.| ..+.+.+..+ .....+|.++|+++|+|| +|...++++||.++||+
T Consensus 542 DaGGv~kEfF~ll~~ei~~p~~GmF~~~e~s~~~WF~~~~~~~~~~y~liGil~GLAI-----yN~~ildlpFPlAlykk 616 (850)
T KOG0941|consen 542 DAGGVRKEFFQLLVEEIFNPEYGMFTYDEESSLLWFNPSPFEEEKQYHLIGILCGLAI-----YNNTILDLPFPLALYKK 616 (850)
T ss_pred ccCchHHHHHHHHHHHHcCccccCeecccccceeeecCCCCCccceeeehhHHHHHHH-----hccceecCCCcHHHHHH
Confidence 3455777886788888888765 4444443332 334468999999999999 99999999999999999
Q ss_pred hhCCCCChhhhhhccCccchhhHhhHHHHHHh---cCccchheeeeEeEeeeeC-----------Cee--eeech-HHHH
Q psy14176 78 SLGQHCHQNKSKSTCYDTYNHGHRLYVNWRFM---RGIEQQFLALQKGFTHWIL-----------GLL--RYWEN-PTML 140 (262)
Q Consensus 78 Llg~~~tl~Dl~~~~~D~~~~l~~s~l~~l~~---~~~~~~~l~l~F~v~~~~~-----------g~~--vt~eN-~eYv 140 (262)
|++.+++++||.++ - |.++++ |+.|++ .|++++ ++++|++..+.. |.. ||.+| +|||
T Consensus 617 Ll~~~~sl~DL~el--s--P~~~~s-L~~lL~y~gdd~ed~-f~l~F~i~~~~~g~~~~~~L~~nG~~i~vt~~Nr~efV 690 (850)
T KOG0941|consen 617 LLDKPPSLEDLKEL--S--PSLGKS-LKELLDYEGDDVEDV-FDLTFQISQDDNGIPRTYELKPNGDEIPVTNENRREFV 690 (850)
T ss_pred HhcCCCCHHHHHhh--C--hHhhhh-HHHHHhccccchhhh-eeeEEEEEehhcCccceeeccCCCcccccccccHHHHH
Confidence 99999999999999 8 999999 999985 377777 999999876544 433 45569 9999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhccccccccccCCCCCHHHHHHHHcCCCCCchhhhccceeecccccchhhhhhccCCCCC
Q psy14176 141 QLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKQFSNIWHLFFLLSQHCTS 220 (262)
Q Consensus 141 ~~~~~~~l~~~i~~q~~afr~Gf~~vip~~~L~~fs~~EL~~licG~~~id~~dlk~~t~y~~~~~~~~~~~~~~~g~~~ 220 (262)
++|++|.++.+|++|++||++||+.|+..+.+++|.|+||+.+|||+.++|++.+++.|+|+ +||++
T Consensus 691 ~~Yvd~~~n~sv~~q~~aF~~GF~~v~~~~~l~lf~peEl~~li~G~~~~Dw~~l~~~~~Y~-------------ggy~~ 757 (850)
T KOG0941|consen 691 NLYVDYILNKSVKKQFEAFRRGFYKVCDENLLRLFQPEELEKLICGSEDYDWKALEETTEYD-------------GGYTS 757 (850)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhchhhhhhcCHHHHHHHHhCCCccCHHHHhhhceec-------------CcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999 48999
Q ss_pred CCHHHHHHHHHHHhCCHHHHHhhcccccCCCCCCcccccccC
Q psy14176 221 DTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFKALQ 262 (262)
Q Consensus 221 ~~~~i~~Fw~vl~~~s~eer~~fL~FvTGs~rlP~gGf~~L~ 262 (262)
+||+|+|||++++.||.++|++||+|+|||+|+|++|.++||
T Consensus 758 ~~~~I~~FWe~~~~~~~~~kkkfL~F~TGsdRipv~G~~~l~ 799 (850)
T KOG0941|consen 758 DSPTIQWFWEIFHAFTLEEKKKFLQFLTGSDRIPVGGLAKLK 799 (850)
T ss_pred CChHHHHHHHHHHhCCHHHhhhheEeecCCCccccCChhhce
Confidence 999999999999999999999999999999999999999986
No 7
>KOG0942|consensus
Probab=100.00 E-value=2.8e-45 Score=360.20 Aligned_cols=228 Identities=26% Similarity=0.364 Sum_probs=200.9
Q ss_pred CcchHHHHHHHhhhcccc-----------eecCCCCCChH-HHHHHHHHHHHHhhccccccccccCeeecCCCCHHHHHH
Q psy14176 10 VRDEKQIDLAEQLESVAF-----------VLCGEDHISLD-KFCQIFQAKGMILGLSDQMILALSDDLSVHGFKNKMWKF 77 (262)
Q Consensus 10 ~~~e~~~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~~f~~~G~llg~al~~~~~~~~~~l~l~f~~~f~k~ 77 (262)
+-.|+-..++...+++.+ +|+|......+ .++++|+|+|+++|||| +.+..++++|+.+|.++
T Consensus 689 IfkEFLtel~ktaFdpn~GlF~~T~~~lLYPNp~~~~l~~~~~lkhy~FLGrllGK~i-----YE~iLvdvpFA~FFlaK 763 (1001)
T KOG0942|consen 689 IFKEFLTELLKTAFDPNYGLFKETEDHLLYPNPTAAMLLDVDCLKHYYFLGRLLGKCI-----YEGILVDVPFAEFFLAK 763 (1001)
T ss_pred cHHHHHHHHHHhhcCccccceeecccceecCCCCchhhhhhHHHHHHHHHHHHHHHHH-----HhcceecccHHHHHHHH
Confidence 345666677777776532 33333322233 49999999999999999 99999999999999999
Q ss_pred hhCCCC--ChhhhhhccCccchhhHhhHHHHHHh--c-CccchheeeeEeEeeeeCC-----------e--eeeech-HH
Q psy14176 78 SLGQHC--HQNKSKSTCYDTYNHGHRLYVNWRFM--R-GIEQQFLALQKGFTHWILG-----------L--LRYWEN-PT 138 (262)
Q Consensus 78 Llg~~~--tl~Dl~~~~~D~~~~l~~s~l~~l~~--~-~~~~~~l~l~F~v~~~~~g-----------~--~vt~eN-~e 138 (262)
|+|.+- .++||.++ | |++|++ |..|++ + ++++ ++|+|+|.....| . .||.+| -+
T Consensus 764 llg~~~~vd~~dL~Sl--D--PeLY~n-LifLk~y~gddi~e--L~L~FtVv~~e~G~~~vVeLkPnGs~i~VTneNvi~ 836 (1001)
T KOG0942|consen 764 LLGTSNDVDLHDLASL--D--PELYKN-LIFLKNYNGDDISE--LQLDFTVVNSELGERQVVELKPNGSKIRVTNENVIE 836 (1001)
T ss_pred HhCCCCCCChhhhccc--C--HHHHHH-HHHHHhcCCCchhh--ccceEEEeccccccceeEEeccCCccceeechhhhh
Confidence 999986 99999999 9 999999 888885 3 5666 9999998765444 3 378889 99
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhccccccccccCCCCCHHHHHHHHcCCC-CCchhhhccceeecccccchhhhhhccCC
Q psy14176 139 MLQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLT-SIDIHDWKQHTRLKQFSNIWHLFFLLSQH 217 (262)
Q Consensus 139 Yv~~~~~~~l~~~i~~q~~afr~Gf~~vip~~~L~~fs~~EL~~licG~~-~id~~dlk~~t~y~~~~~~~~~~~~~~~g 217 (262)
||+++++|+++.++.+|+.|||+||..|||++|+.||++.||+.+|.|.+ .||++|||+||.|. +|
T Consensus 837 YihLVsnY~LN~rir~~c~AFr~Gls~II~~eWl~MF~~~ELQiLIsG~~~pidldDLr~~teY~-------------Gg 903 (1001)
T KOG0942|consen 837 YIHLVSNYKLNQRIRRQCSAFRKGLSQIISPEWLRMFNEHELQILISGAEDPIDLDDLRKNTEYA-------------GG 903 (1001)
T ss_pred hhHHhhhhHHHHHHHHHHHHHhcchhhcCCHHHHHhhChhheeeeecCCcCcccHHHHHhhcccc-------------CC
Confidence 99999999999999999999999999999999999999999999999996 79999999999997 49
Q ss_pred CCCCCHHHHHHHHHHHhCCHHHHHhhcccccCCCCCCcccccccC
Q psy14176 218 CTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFKALQ 262 (262)
Q Consensus 218 ~~~~~~~i~~Fw~vl~~~s~eer~~fL~FvTGs~rlP~gGf~~L~ 262 (262)
|+++||+|.+||+|+++|+.|+|++||+||||++|.|+-||++|.
T Consensus 904 y~~~hp~Iv~FWeVl~~F~~edKr~fLKFVTscsRpPllGFK~L~ 948 (1001)
T KOG0942|consen 904 YSPDHPTIVMFWEVLEEFSDEDKRKFLKFVTSCSRPPLLGFKALD 948 (1001)
T ss_pred CCCCCCchhHHHHHHHhcchHHHHHHHHHHhcCCCcccccchhcC
Confidence 999999999999999999999999999999999999999999984
No 8
>KOG0170|consensus
Probab=100.00 E-value=5.6e-42 Score=320.50 Aligned_cols=201 Identities=21% Similarity=0.340 Sum_probs=184.8
Q ss_pred hHHHHHHHHHHHHHhhccccccccccCeeecCCCCHHHHHHhhCCCCChhhhhhccCccchhhHhhHHHHHHh-------
Q psy14176 37 LDKFCQIFQAKGMILGLSDQMILALSDDLSVHGFKNKMWKFSLGQHCHQNKSKSTCYDTYNHGHRLYVNWRFM------- 109 (262)
Q Consensus 37 ~~~~~~~f~~~G~llg~al~~~~~~~~~~l~l~f~~~f~k~Llg~~~tl~Dl~~~~~D~~~~l~~s~l~~l~~------- 109 (262)
.++..++|+++|+++|+|| .+++.++++|+++|||.++|+++|..|+..+ | |+++++ |..|..
T Consensus 326 ~~kvi~~F~~LG~~vAkal-----~D~Rildlpls~~Fykl~l~q~Lt~~dv~~v--d--~~l~~s-L~~Le~vv~~k~~ 395 (621)
T KOG0170|consen 326 NEKVIELFRLLGTFVAKAL-----QDGRILDLPLSKAFYKLILGQELTSHDVTTV--D--PELAKS-LLELELVVPRKKK 395 (621)
T ss_pred HHHHHHHHHHHHHHHHHHH-----hcCceEeeeccHHHHHHHhcCCcccccceec--C--HHHHHH-HHHHHHHhhhhhh
Confidence 4678999999999999999 9999999999999999999999999999999 9 999999 776631
Q ss_pred -------------------cCccchheeeeEeEee------eeCC--eeeeech-HHHHHHHHHHHHHHhHHHHHHHHHh
Q psy14176 110 -------------------RGIEQQFLALQKGFTH------WILG--LLRYWEN-PTMLQLYVNWRFMRGIEQQFLALQK 161 (262)
Q Consensus 110 -------------------~~~~~~~l~l~F~v~~------~~~g--~~vt~eN-~eYv~~~~~~~l~~~i~~q~~afr~ 161 (262)
+.+++ ++|+|+++. .++| +.|+..| +|||+.++++.+.++|.+|++|||.
T Consensus 396 ~~~~~~d~~~a~~dltl~g~~iEd--L~LdFTLPG~p~ieL~p~g~~~~V~~~NleEYi~~VId~tv~kGVqkQleAFr~ 473 (621)
T KOG0170|consen 396 LEKYIGDVANADDDLTLNGCSIED--LSLDFTLPGFPDIELIPGGANKPVTISNLEEYIHGVIDATVGKGVQKQLEAFRS 473 (621)
T ss_pred hhhhcccccccccceeecCcchhh--ceeeEecCCCCCeeeccCCCCCccccccHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 12466 899999775 3344 5688899 9999999999999999999999999
Q ss_pred ccccccccccCCCCCHHHHHHHHcCCC-CCchhhhccceeecccccchhhhhhccCCCCCCCHHHHHHHHHHHhCCHHHH
Q psy14176 162 GFTEIVPLHLLRPFDERELELVIGGLT-SIDIHDWKQHTRLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMR 240 (262)
Q Consensus 162 Gf~~vip~~~L~~fs~~EL~~licG~~-~id~~dlk~~t~y~~~~~~~~~~~~~~~g~~~~~~~i~~Fw~vl~~~s~eer 240 (262)
||.+|+|...|++|+|+||..++||.. +++.+.+-.|++++ |||+.++|.|+.|.+++..|+.+||
T Consensus 474 GF~~VF~~~~Lqif~p~EL~~llcg~~e~ws~~TL~~~i~~D-------------HGYT~~Sp~i~~li~ils~f~~~qQ 540 (621)
T KOG0170|consen 474 GFSSVFPYEHLQIFTPEELVTLLCGVEEDWSMATLMEHIKAD-------------HGYTMDSPIIHDLISILSAFDKEQQ 540 (621)
T ss_pred hhhhccchhheeecCHHHHHHHhccchhhccHHHHHHhcccc-------------cCccCCCcHHHHHHHHhhhhchHHH
Confidence 999999999999999999999999985 68888888888887 7999999999999999999999999
Q ss_pred HhhcccccCCCCCCcccccccC
Q psy14176 241 ARLLQFVTGSSRVPLQGFKALQ 262 (262)
Q Consensus 241 ~~fL~FvTGs~rlP~gGf~~L~ 262 (262)
|.||||||||+|||+|||++|+
T Consensus 541 R~FLQFvTGSprLPiGGfasLN 562 (621)
T KOG0170|consen 541 RLFLQFVTGSPRLPIGGFASLN 562 (621)
T ss_pred HHHHHHhcCCCCCCCCcccccC
Confidence 9999999999999999999985
No 9
>KOG4427|consensus
Probab=100.00 E-value=3.9e-41 Score=325.06 Aligned_cols=201 Identities=27% Similarity=0.377 Sum_probs=188.2
Q ss_pred hHHHHHHHHHHHHHhhccccccccccCeeecCCCCHHHHHHhhCCCC--ChhhhhhccCccchhhHhhHHHHHH--hcCc
Q psy14176 37 LDKFCQIFQAKGMILGLSDQMILALSDDLSVHGFKNKMWKFSLGQHC--HQNKSKSTCYDTYNHGHRLYVNWRF--MRGI 112 (262)
Q Consensus 37 ~~~~~~~f~~~G~llg~al~~~~~~~~~~l~l~f~~~f~k~Llg~~~--tl~Dl~~~~~D~~~~l~~s~l~~l~--~~~~ 112 (262)
.++|+++|+|+||++|||+ ++|+.++++|++.|...|+|..- .++.|.++ | |++|++ |..+. ++|+
T Consensus 799 ~en~lqlfeFvGrmlGKAv-----YEGIvvDv~fa~vflsqlLG~~~~s~~DELs~L--D--pElYrn-LtfvKhYdgd~ 868 (1096)
T KOG4427|consen 799 HENHLQLFEFVGRMLGKAV-----YEGIVVDVPFASVFLSQLLGRHSLSFIDELSSL--D--PELYRN-LTFVKHYDGDL 868 (1096)
T ss_pred hhchhHHHHHHHHHHHHHH-----hcceEEecccHHHHHHHHhcccchhhhhhcccc--C--HHHHhh-hhHHHhhcccH
Confidence 4899999999999999999 99999999999999999999875 88999999 9 999999 99997 6888
Q ss_pred cchheeeeEeEeee-----------eCCee--eeech-HHHHHHHHHHHHHHhHHHHHHHHHhccccccccccCCCCCHH
Q psy14176 113 EQQFLALQKGFTHW-----------ILGLL--RYWEN-PTMLQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDER 178 (262)
Q Consensus 113 ~~~~l~l~F~v~~~-----------~~g~~--vt~eN-~eYv~~~~~~~l~~~i~~q~~afr~Gf~~vip~~~L~~fs~~ 178 (262)
.+ ++|||+++.+ |+|+. ||.|| -.||..++.+++++++..|..||-+||.++|.+.||++|+|.
T Consensus 869 ~d--L~LtfSvdedfmGkis~~eL~PgGkt~sVtneNKi~YIH~MA~~rmnrqi~eqt~Af~rG~rsii~P~WlslFs~~ 946 (1096)
T KOG4427|consen 869 KD--LCLTFSVDEDFMGKISTIELKPGGKTISVTNENKIQYIHAMAHFRMNRQIVEQTNAFYRGFRSIISPEWLSLFSPP 946 (1096)
T ss_pred hh--heeeeEechhhccceeEEEeccCCcceeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHccCcH
Confidence 89 9999998754 45543 56679 999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCC-CCchhhhccceeecccccchhhhhhccCCCCCCCHHHHHHHHHHHh-CCHHHHHhhcccccCCCCCCcc
Q psy14176 179 ELELVIGGLT-SIDIHDWKQHTRLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVES-YSEEMRARLLQFVTGSSRVPLQ 256 (262)
Q Consensus 179 EL~~licG~~-~id~~dlk~~t~y~~~~~~~~~~~~~~~g~~~~~~~i~~Fw~vl~~-~s~eer~~fL~FvTGs~rlP~g 256 (262)
||+++|.|.. +||++|||+||.|- +||..+|.+|+|||+|+++ ||+|||+.||+|||.++|.|+-
T Consensus 947 elq~LiSG~nsdiDl~DLkrnt~Y~-------------GGfh~shrvIkwlWdIl~~dFt~eERklfLKFVTSCSrpPlL 1013 (1096)
T KOG4427|consen 947 ELQRLISGDNSDIDLDDLKRNTKYY-------------GGFHDSHRVIKWLWDILAGDFTPEERKLFLKFVTSCSRPPLL 1013 (1096)
T ss_pred HHHHHhcCCCCCCCHHHHHhcCEee-------------cccCCcchhHHHHHHHHhccCChHHHHHHHHHHhhcCCCccc
Confidence 9999999995 99999999999999 4999999999999999997 9999999999999999999999
Q ss_pred cccccC
Q psy14176 257 GFKALQ 262 (262)
Q Consensus 257 Gf~~L~ 262 (262)
||+-|+
T Consensus 1014 GFayLe 1019 (1096)
T KOG4427|consen 1014 GFAYLE 1019 (1096)
T ss_pred cccccC
Confidence 999875
No 10
>KOG0940|consensus
Probab=99.96 E-value=4.6e-30 Score=237.81 Aligned_cols=196 Identities=34% Similarity=0.555 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHhhccccccccccCeeecCCCCHHHHHHhhCCCCChhhhhhccCccchhhHhhHHHHHHhcCccchhe
Q psy14176 38 DKFCQIFQAKGMILGLSDQMILALSDDLSVHGFKNKMWKFSLGQHCHQNKSKSTCYDTYNHGHRLYVNWRFMRGIEQQFL 117 (262)
Q Consensus 38 ~~~~~~f~~~G~llg~al~~~~~~~~~~l~l~f~~~f~k~Llg~~~tl~Dl~~~~~D~~~~l~~s~l~~l~~~~~~~~~l 117 (262)
+.++++|+|+|+.+|+|+ .++..++-. -.+|||.|++++++++|.+.+ | +++|++ +.+++++++..
T Consensus 100 p~~l~~~~~vg~~~~l~~-----~h~~~~~~g-~r~F~~~i~~ktt~ldd~e~~--d--~e~~~s-~~~~~en~~~~--- 165 (358)
T KOG0940|consen 100 PGHLTYFRFVGGVLALAG-----WHMRFTDTG-QRPFYKHILKKTTTLDDREAV--D--PEFYNS-LTWIRENDPTN--- 165 (358)
T ss_pred CCcccccccccccccccc-----eeeEecCCC-ceehhhhhhcCccccCchhhc--C--cccccc-ccccccCCccc---
Confidence 667899999999999999 999998877 999999999999999999999 9 999999 99999998876
Q ss_pred eeeEeEeeeeCCe-------------eeeech-HHHHHHHHHHHHHHhHHHHHHHHHhccccccccccCCCCCHHHHHHH
Q psy14176 118 ALQKGFTHWILGL-------------LRYWEN-PTMLQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELV 183 (262)
Q Consensus 118 ~l~F~v~~~~~g~-------------~vt~eN-~eYv~~~~~~~l~~~i~~q~~afr~Gf~~vip~~~L~~fs~~EL~~l 183 (262)
+++|.++...+|. .++.+| ++||.++.+ +...++..|..++.+||..++|...+++|.+.|++.+
T Consensus 166 ~~~f~~~~~~~g~~~~~~l~p~g~~~~v~~~n~~~yi~~l~~-r~~~~~~~q~~~l~~~~~~~~p~~~~~~~~e~~~e~~ 244 (358)
T KOG0940|consen 166 DLTFSVESEVLGQITTQELKPNGANIQVTEENKKEYIMLLQN-RFERGIQEQLKALLQGFNELLPQSLLRIFDEMELELA 244 (358)
T ss_pred chhhhcchhhcCCccceeecCCCcccccccccHHHHHHHHHH-HHHHHHHHHHHHHhccccccCCcccccccchhhHHHH
Confidence 6888877655443 255679 999999999 8888999999999999999999999999999999999
Q ss_pred HcCCCCCchhhhccceeecccccchhhhhhccCCCCCCCHHHHHHHHHHHhCCHHHHHhhcccccCCCCCCcccccccC
Q psy14176 184 IGGLTSIDIHDWKQHTRLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFKALQ 262 (262)
Q Consensus 184 icG~~~id~~dlk~~t~y~~~~~~~~~~~~~~~g~~~~~~~i~~Fw~vl~~~s~eer~~fL~FvTGs~rlP~gGf~~L~ 262 (262)
+||.+++|+++|++++.|. +|..++++|+|||+.+..+++++|.+.++|+||++++|.+||+.|.
T Consensus 245 ~~~~~~~~~~d~~~~t~~~--------------~~~~~~~~i~wf~~~v~~~~~~~r~r~l~~~tg~~~vp~~~~~~l~ 309 (358)
T KOG0940|consen 245 LSGDPEIDVNDWKQNTEYR--------------GYSETDRQIDWFWNNVDEMDNEERIRLLQFVTGTSRVPVEGFAILS 309 (358)
T ss_pred hcCCcccchhHHhhhcccc--------------cccCCccccHHHHHhhhhcChHHHHhhhhccCCCccccccchhhcc
Confidence 9999999999999999999 9999999999999999999999999999999999999999999874
No 11
>KOG0943|consensus
Probab=99.93 E-value=1.1e-26 Score=231.89 Aligned_cols=201 Identities=22% Similarity=0.336 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHHHhhccccccccccCeeecCCCCHHHHHHhhCCCCChhhhhhccCccchhhHhhHHHHHHhcCc----c
Q psy14176 38 DKFCQIFQAKGMILGLSDQMILALSDDLSVHGFKNKMWKFSLGQHCHQNKSKSTCYDTYNHGHRLYVNWRFMRGI----E 113 (262)
Q Consensus 38 ~~~~~~f~~~G~llg~al~~~~~~~~~~l~l~f~~~f~k~Llg~~~tl~Dl~~~~~D~~~~l~~s~l~~l~~~~~----~ 113 (262)
+..+..|+-+|||+|+|+ ..|...|++|++.++|.|+|.++.+.|+..+ | |.+|.+ |+.|..... +
T Consensus 2739 ~~RLaafRniGRIlGiCL-----~Qgdi~PirfnRHifk~iL~l~icW~Df~Ff--D--PVlfen-LRaLfkAhpsSd~D 2808 (3015)
T KOG0943|consen 2739 EARLAAFRNIGRILGICL-----LQGDICPIRFNRHIFKVILGLKICWHDFAFF--D--PVLFEN-LRALFKAHPSSDAD 2808 (3015)
T ss_pred HHHHHHHHhhhhHhhhhh-----hcCcccceeehhHHHHHHhcCceehhhhccc--c--HHHHHH-HHHHHhcCCccccc
Confidence 667889999999999999 9999999999999999999999999999999 9 999999 998864322 1
Q ss_pred chh--eeeeEe-----------EeeeeCCee--eeech-HHHHHHHHHHHHHHhHHHHHHHHHhccccccccccCCCCCH
Q psy14176 114 QQF--LALQKG-----------FTHWILGLL--RYWEN-PTMLQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDE 177 (262)
Q Consensus 114 ~~~--l~l~F~-----------v~~~~~g~~--vt~eN-~eYv~~~~~~~l~~~i~~q~~afr~Gf~~vip~~~L~~fs~ 177 (262)
..| +++.|. |+..++|.. |+.+| -|||.+|+++++.......++|+|+|+.+|||.+.|.-+|+
T Consensus 2809 adFS~md~aa~gdlckee~a~qVeL~PNGdeilVnkdNViEYV~KYAE~~llgk~~i~feAiReGiLDViPenmL~~LT~ 2888 (3015)
T KOG0943|consen 2809 ADFSAMDLAAAGDLCKEEGAGQVELIPNGDEILVNKDNVIEYVRKYAEHRLLGKAEIPFEAIREGILDVIPENMLEDLTA 2888 (3015)
T ss_pred chhhHHHHhhccchhhhcCceeEEEecCCceeeecchhHHHHHHHHHHhhhheeeeccHHHHHHhHHhhcchhhhcccCH
Confidence 111 444443 334455643 45569 99999999999987667899999999999999999999999
Q ss_pred HHHHHHHcCCCCCchhhhccceeecccccchhhhhhccCCCCCCCHHHHHHHHHHHhCCHHHHHhhcccccCCCCCCccc
Q psy14176 178 RELELVIGGLTSIDIHDWKQHTRLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQG 257 (262)
Q Consensus 178 ~EL~~licG~~~id~~dlk~~t~y~~~~~~~~~~~~~~~g~~~~~~~i~~Fw~vl~~~s~eer~~fL~FvTGs~rlP~gG 257 (262)
+++..+|||-.++++.-|...|-|.+-+++ .-..-.+..+|||+|++.||..+|+.++.|||||+.||+.|
T Consensus 2889 EDfRLiicG~eeVniqmL~e~TgFlDES~a---------naEkL~qFKqWFWqiiEkfs~qEkQdLVfFWTgSPaLPAa~ 2959 (3015)
T KOG0943|consen 2889 EDFRLIICGCEEVNIQMLIEFTGFLDESGA---------NAEKLLQFKQWFWQIIEKFSMQEKQDLVFFWTGSPALPAAE 2959 (3015)
T ss_pred hHheeeeecccceehhHhhhhccccccccc---------cHHHHHHHHHHHHHHHHHHhhhhhccEEEEecCCCCCCccc
Confidence 999999999999999999999988732110 00111356789999999999999999999999999999975
No 12
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=43.43 E-value=13 Score=27.73 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=17.5
Q ss_pred hCCHHHHHhhcccccCCCC
Q psy14176 234 SYSEEMRARLLQFVTGSSR 252 (262)
Q Consensus 234 ~~s~eer~~fL~FvTGs~r 252 (262)
+||++|-|.|=+|+|||+-
T Consensus 51 ~lTpDQVrAlHRlvTsSpe 69 (92)
T PHA02681 51 KMTDDQVRAFHALVTSSPE 69 (92)
T ss_pred cCCHHHHHHHHHHHhCCCC
Confidence 6999999999999999974
No 13
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=30.80 E-value=47 Score=24.40 Aligned_cols=51 Identities=18% Similarity=0.431 Sum_probs=41.3
Q ss_pred ccccCCCCCcchHHHHHHHhhhc-ccceecCCCCCChHHHHHHHHHHHHHhh
Q psy14176 2 RIATGASMVRDEKQIDLAEQLES-VAFVLCGEDHISLDKFCQIFQAKGMILG 52 (262)
Q Consensus 2 ~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~G~llg 52 (262)
-|++|.++.+++....+..++.. ..|.-|.-..+..+.-++++.--|+++.
T Consensus 11 ml~~~~~~t~~~L~~~i~~~FG~~arFhTCSa~~m~a~~Li~FL~~kgKfi~ 62 (77)
T TIGR03853 11 MLASGEPYTRESLKAAIEQKFGEDARFHTCSAEGMTADELLQFLLKKGKFIE 62 (77)
T ss_pred HHHcCCCcCHHHHHHHHHHHhCCCceEeecccccCCHHHHHHHHHHCCCEee
Confidence 36899999888886677776665 4699999999999988888887787764
No 14
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=27.15 E-value=63 Score=23.80 Aligned_cols=51 Identities=16% Similarity=0.432 Sum_probs=41.7
Q ss_pred ccccCCCCCcchHHHHHHHhhhcc-cceecCCCCCChHHHHHHHHHHHHHhh
Q psy14176 2 RIATGASMVRDEKQIDLAEQLESV-AFVLCGEDHISLDKFCQIFQAKGMILG 52 (262)
Q Consensus 2 ~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~~~G~llg 52 (262)
-|+.|.++..++.......++... .|.-|.-..+..+.-++++.-=|+++.
T Consensus 13 mi~~~~~~t~~~L~~ai~~~FG~~arFhTCSae~m~a~eLv~FL~~rgKfi~ 64 (78)
T PF10678_consen 13 MIESGNPYTKEELKAAIIEKFGEDARFHTCSAEGMTADELVDFLEERGKFIP 64 (78)
T ss_pred HHHcCCCcCHHHHHHHHHHHhCCCceEEecCCCCCCHHHHHHHHHHcCCEee
Confidence 367899999888877777777754 699999999999888888877787764
No 15
>PF13945 NST1: Salt tolerance down-regulator
Probab=24.28 E-value=53 Score=28.32 Aligned_cols=22 Identities=45% Similarity=0.706 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHhCCHHHHHhhcc
Q psy14176 221 DTPVVKWFWQIVESYSEEMRARLLQ 245 (262)
Q Consensus 221 ~~~~i~~Fw~vl~~~s~eer~~fL~ 245 (262)
....++-|| ++|+++||+.||+
T Consensus 103 Ere~LkeFW---~SL~eeERr~LVk 124 (190)
T PF13945_consen 103 EREKLKEFW---ESLSEEERRSLVK 124 (190)
T ss_pred HHHHHHHHH---HccCHHHHHHHHH
Confidence 355778888 5789999999986
No 16
>PF02758 PYRIN: PAAD/DAPIN/Pyrin domain; InterPro: IPR004020 Pyrin domain was identified as putative protein-protein interaction domain at the N-terminal region of several proteins thought to function in apoptotic and inflammatory signalling pathways. Using secondary structure prediction and potential-based fold recognition methods, the PYRIN domain is predicted to be a member of the six-helix bundle death domain-fold superfamily that includes death domains (DDs), death effector domains (DEDs), and caspase recruitment domains (CARDs). Members of the death domain-fold superfamily are well established mediators of protein-protein interactions found in many proteins involved in apoptosis and inflammation, indicating further that the PYRIN domains serve a similar function. Comparison of a circular dichroism spectrum of the PYRIN domain of CARD7/DEFCAP/NAC/NALP1 with spectra of several proteins known to adopt the death domain-fold provides experimental support for the structure prediction [] It is found in interferon-inducible proteins, pyrin and myeloid cell nuclear differentiation antigen.; PDB: 2DO9_A 2YU0_A 2KN6_A 1UCP_A 2L6A_A 2KM6_A 1PN5_A 2DBG_A 3QF2_B 2HM2_Q.
Probab=23.38 E-value=75 Score=23.15 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=24.8
Q ss_pred HHHHHHHhCCHHHHHhhcccc-----cCCCCCCcc
Q psy14176 227 WFWQIVESYSEEMRARLLQFV-----TGSSRVPLQ 256 (262)
Q Consensus 227 ~Fw~vl~~~s~eer~~fL~Fv-----TGs~rlP~g 256 (262)
-+..++++++.+|-++|-... .|..++|-+
T Consensus 4 ~Ll~~Le~L~~~efk~FK~~L~~~~~~~~~~Ip~~ 38 (83)
T PF02758_consen 4 LLLWYLEELSEEEFKRFKWLLKEPVKEGFPPIPRG 38 (83)
T ss_dssp HHHHHHHTS-HHHHHHHHHHHHSTSSTTTCSSSHC
T ss_pred HHHHHHHhCCHHHHHHHHHHhcchhhcCCCCCCHH
Confidence 467899999999999999999 777788755
No 17
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=22.40 E-value=74 Score=33.70 Aligned_cols=116 Identities=17% Similarity=0.261 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhccccccccccC----CCCCHHHHHHHHc------CCCCCchhhhccceeeccccc
Q psy14176 137 PTMLQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLL----RPFDERELELVIG------GLTSIDIHDWKQHTRLKQFSN 206 (262)
Q Consensus 137 ~eYv~~~~~~~l~~~i~~q~~afr~Gf~~vip~~~L----~~fs~~EL~~lic------G~~~id~~dlk~~t~y~~~~~ 206 (262)
..=++++-.||........+..+.. ..-+..-| --||+.++..-+. |....++.++..+.+=.
T Consensus 68 ~~~~~li~ayR~~Ghl~a~ldPL~~---~~~~~~~l~~~~~glt~~d~~~~~~~~~~~~~~~~~~l~e~~~~l~~~---- 140 (906)
T COG0567 68 VKVLRLINAYRSRGHLHANLDPLGL---KRPDVPELDPEFHGLTEADLDETFNIGDGFLGKETMTLRELIEILKKT---- 140 (906)
T ss_pred HHHHHHHHHHHHhchhhhcCCcccC---CCCCccccCHhhcCCCHHHHhccccccccccccccccHHHHHHHHHHH----
Confidence 3444555666766566666666662 22111223 2678999988774 44456666665544322
Q ss_pred chhhhhhccCCCCCCCHHHHHHHHHHHh----CCHHHHHhhccccc--------------CCCCCCcccccc
Q psy14176 207 IWHLFFLLSQHCTSDTPVVKWFWQIVES----YSEEMRARLLQFVT--------------GSSRVPLQGFKA 260 (262)
Q Consensus 207 ~~~~~~~~~~g~~~~~~~i~~Fw~vl~~----~s~eer~~fL~FvT--------------Gs~rlP~gGf~~ 260 (262)
++++..+.--+-.+...-.|+|+-+++ +|+|+|+.+|+=.| |..|.-+.|-.+
T Consensus 141 -Ycgsig~E~~hi~~~~~~~Wl~~riE~~~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KRFslEG~es 211 (906)
T COG0567 141 -YCGSIGVEYMHISDPEEKRWLQERIESGKPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKRFSLEGGES 211 (906)
T ss_pred -hccceeeeeeccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCccccccchhh
Confidence 111101111123455578899999997 99999999887554 666666665544
Done!